Citrus Sinensis ID: 009614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
Protein Sequence
MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccEEEEccccccccEEccccccccccccccEEEEEEccccccEEcccccccEEEEEEcccccEEEEEEEEEEEEEcccccEEEcccccccEEEEEcccccEEccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEccccccccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEccccccccccccEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEEEEEcccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHccHHHccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccEEEEEcccccEEEEEccccEEEEEEcccccEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEEEccccccEEEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
magvsneeeeEQFFDTCeeisyvsdrdsdcsegcsssvEHLADSVLcysqseiwtgypqsVNERRSKFLKLMGFILDqslmnaedledesrVRTQLDvdritensgavlrtsgfgddihfsqssissklceapevlehftlkdhaacriddwgkgadlvvsdndqdEIEIESRlqesgssqsvsfdeflgtpgssssfvqplpsrqdeesrDLVDAKRKVKRGWLKKLGAMARIIDrhgsatlkpgdheltlgqrmrrvrvhpvkkqsrelsslytgqeflahegsiltmkfsldgqylasggedgtVRVWKVIEHerldgfdvqdtdpsclYFTINHlsqlipidvdkekidktkslrkssdltcvvlppkvfrllekplhefqghssevldlswskngfllsssadKTVRLWQVGIDRClrvfshnnyvtsvafnpvddnyfisgsidgKVRIWEVrrcqvvdytdIREIVSAvcycpdgkggivgtmtgncrfydikdnqLYQQNQIClqgkkklpgkritgfqvvki
Flexible Loop (DISEMBL)
magvsneeeeeqFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTqldvdritensgavlrtsgfgdDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESrlqesgssqsVSFDEFLGTPGssssfvqplpsrqdeesrdlvdakrkvkrgwlkklGAMARIIdrhgsatlkpgdheltlgqrmrrvrvhpvkkqsrelsslYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHlsqlipidvdKEKIDKtkslrkssdltcvvLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSvafnpvddnyFISGsidgkvriwEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIclqgkkklpgkritgfqvvki
Low Complexity Region (SEG)
MAGVSNeeeeeQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI
Disordered region (IsUnstruct)
***************TCEEISYV**************VEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLM*******************I****GAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV***********************************************************VKRGWLKKLGAMARIID*************************************LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID*******SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF*****
Disordered Region (DISOPRED)
**********EQFFDTCE******************************SQSEIWTGYPQSVNERRSKFLKLMGFILDQ**************************************************************LKDHAACRIDDWGKGADL***************LQESGSSQSVSFDEFLGTPGSSSSFVQPL********************GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS**********************DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ***************RITGFQVVKI
Disordered Region (DISEMBL)
*************FDTCEEISY****************EHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIE************SFDEFLGTP**********************DAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI
Disordered Region (DISPRO)
************FFDTCEEIS***************SV*HLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQ*******************VDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	531	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.391	0.222	0.371	2e-41
Q9XSC3	912	WD repeat-containing prot	yes	no	0.440	0.256	0.354	7e-39
O60136	586	Uncharacterized WD repeat	no	no	0.393	0.356	0.352	7e-38
Q498F0	912	WD repeat-containing prot	N/A	no	0.440	0.256	0.357	2e-37
Q5JSH3	913	WD repeat-containing prot	yes	no	0.421	0.245	0.337	8e-37
Q6NVE8	915	WD repeat-containing prot	yes	no	0.421	0.244	0.337	1e-36
Q9R037	908	WD repeat-containing prot	yes	no	0.421	0.246	0.337	1e-36
Q03177	834	WD repeat-containing prot	yes	no	0.483	0.308	0.303	9e-33
P32330	852	2-deoxy-glucose resistant	no	no	0.401	0.25	0.299	1e-21
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.435	0.151	0.282	7e-15

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 37/245 (15%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLI 343
           +I  MKFS DG+YLA GG+D  +R+W V+  EH R    +   +DP              
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDP-------------- 363

Query: 344 PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLL 403
               +  K++               L   VF   E P+ E+ GH++++LDLSWS+N FLL
Sbjct: 364 ----NNPKLN---------------LKAPVFS--EAPIREYAGHTADILDLSWSRNNFLL 402

Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
           SSS DKT RLW      CL  F H+++VTS+AF+P DD +F+SGS+D K+R+W ++   V
Sbjct: 403 SSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAV 462

Query: 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523
             + ++ E+++AV + PDG   I GT  G C FYD +  +   Q  I     K   G ++
Sbjct: 463 SFWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKV 522

Query: 524 TGFQV 528
           TG Q 
Sbjct: 523 TGIQT 527

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  162 bits (410), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 148/251 (58%), Gaps = 17/251 (6%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 559

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
            P    +E ++ +KS   +   +     P  K     ++P  +++GH++++LDLSWSKN 
Sbjct: 560 SP-SPSQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 618

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
           FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W +  
Sbjct: 619 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 678

Query: 461 CQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGKK 516
            +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +   +G+ 
Sbjct: 679 KKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRN 738

Query: 517 KLPGKRITGFQ 527
           K+ G++ITG +
Sbjct: 739 KV-GRKITGIE 748

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  159 bits (401), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 38/247 (15%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC-LYFTINHLSQLIP 344
           S+   + S  G+YLA+ G+D  +RVWKVIE        +++   SC  +FT         
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFT--------- 238

Query: 345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS 404
                                    P  +F    +P+ E  GH++EVL +SWSKN FLL+
Sbjct: 239 -------------------------PSSIFE--PEPVLECVGHNAEVLSISWSKNDFLLT 271

Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
           SSAD+TVRLW     + L VF HN  VT VAF+P+DD YF+SGS+D K+++W + R +++
Sbjct: 272 SSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKIL 331

Query: 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524
            +T++  +VS +C+ PDG+  +VG   G C  Y+ K+ Q Y  + +      +    R+T
Sbjct: 332 HWTELEYVVSTICFYPDGESIVVGMFYGLCAIYETKNLQ-YVSSWLIHHSPSRNKKCRVT 390

Query: 525 GFQVVKI 531
           G Q   I
Sbjct: 391 GLQCASI 397

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 147/252 (58%), Gaps = 18/252 (7%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G++ TMKFS  G+ LAS G+D  VR+W +      + FD  +     +    N   ++
Sbjct: 512 HVGAVWTMKFSHCGRLLASAGQDNVVRIWVL-----KNAFDYFNN----MRIKYNTEGRV 562

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCV--VLPP-KVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
            P    +E ++ +KS       +    V P  K     + P  +++GH++++LDLSWSKN
Sbjct: 563 SP-SPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCKYKGHTADLLDLSWSKN 621

Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
            FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+DGK+R+W + 
Sbjct: 622 YFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIP 681

Query: 460 RCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGK 515
             +V  + +I    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +   +G+
Sbjct: 682 DKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGR 741

Query: 516 KKLPGKRITGFQ 527
            ++ G++ITG +
Sbjct: 742 NRV-GRKITGIE 752

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  155 bits (392), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 141/261 (54%), Gaps = 37/261 (14%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 567

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 568 SLSSSKSDTDTGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 609

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 610 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 669

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
           GK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q
Sbjct: 670 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQ 729

Query: 508 NQI-CLQGKKKLPGKRITGFQ 527
             +   +G+ K+ G++ITG +
Sbjct: 730 IHVRSTRGRNKV-GRKITGIE 749

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  155 bits (391), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 141/261 (54%), Gaps = 37/261 (14%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 569

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 570 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 611

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 612 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 671

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
           GK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q
Sbjct: 672 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQ 731

Query: 508 NQI-CLQGKKKLPGKRITGFQ 527
             +   +G+ K+ G++ITG +
Sbjct: 732 IHVRSTRGRNKV-GRKITGIE 751

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 141/261 (54%), Gaps = 37/261 (14%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
           H G++ TMKFS  G+ LAS G+D  VR+W +      D F+      +T+          
Sbjct: 505 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 562

Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
                  D D        ++  DK    R                  ++P  +++GH+++
Sbjct: 563 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 604

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
           +LDLSWSKN FLLSSS DKTVRLW +    CL  F H ++VT++AF+P DD YF+SGS+D
Sbjct: 605 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 664

Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
           GK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q
Sbjct: 665 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQ 724

Query: 508 NQI-CLQGKKKLPGKRITGFQ 527
             +   +G+ K+ G++ITG +
Sbjct: 725 IHVRSTRGRNKV-GRKITGIE 744

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  142 bits (357), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 147/306 (48%), Gaps = 49/306 (16%)

Query: 265 KKQSRELSSLYTGQEFLAHEG---------------SILTMKFSLDGQYLASGGEDGTVR 309
           +K  ++   L+  QE +A+EG               +I + KFS DG+++A+G +DG +R
Sbjct: 139 RKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGSKDGKIR 198

Query: 310 VWKVI----EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK------IDKTKSLR 359
           +WKVI    E   LD     + +       I    Q+  ++  KEK       +K +   
Sbjct: 199 IWKVIGSPVERAELDSSAESNKEARAKSMRIKQ--QVSSLNNPKEKQFLDSATEKYEEKE 256

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
           K  +L   V  P   RL       ++ H  +VLD++WSKN F+LS+S DKTV+LW     
Sbjct: 257 KLLNLYAPVFHPTPLRL-------YKEHVQDVLDINWSKNNFILSASMDKTVKLWHPDRK 309

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
             L+ F H ++VT V F+P DD +FISG +D K R+W +   +V    D ++++++V   
Sbjct: 310 NSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLITSVTLS 369

Query: 480 P-DGKGGIVGTMTGNCRF-----------YDIKDNQLYQQN---QICLQGKKKLPGKRIT 524
           P +GK  I+GT  G               + + D Q  +QN    +     K   G R+T
Sbjct: 370 PEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKIRHGPRVT 429

Query: 525 GFQVVK 530
           G Q  +
Sbjct: 430 GLQAFR 435

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 24/237 (10%)

Query: 272 SSLYTGQEFLAH----EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327
           S+ Y G+  +A+    + SI    FS DG+Y+  G +DG++ +WKVI +  +   ++  +
Sbjct: 157 STTYQGEPAVANSELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVI-NSPVKRSEMGRS 215

Query: 328 DPSCLYFTINHLS---QLIPIDVDKEKI--------DKTKSLRKSSDLTCVVLPPKVFRL 376
           + S      N L     L  I      I        D+ +   K   L   V    VFR+
Sbjct: 216 EKSVSASRANSLKIQRHLASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRV 275

Query: 377 LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
                  F  H+ ++LD +WSKNGFL+++S DKT +LW       L+ F H ++VTS  F
Sbjct: 276 -------FMEHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIF 328

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD-GKGGIVGTMTG 492
            P DD + I+G +D + R+W +   +V    D +++++++   P  G+  I+GT  G
Sbjct: 329 FPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNG 385

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 31/262 (11%)

Query: 274  LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
            LYT Q    H   + ++ FS DG  LASGG+D  VR+W +     L       +    L 
Sbjct: 1067 LYTLQ---GHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLV 1123

Query: 334  FTINHLS-------QLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPP-----------KVF 374
            F+ N ++       Q++ + D+  +K   T     ++ +  V   P           +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ-GHTNWVNAVAFSPDGATLASGSGDQTV 1182

Query: 375  RLLE----KPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHN 428
            RL +    K L+  QGH+S V  + ++ +G  L+S S+D+TVRLW++   +CL  F  H 
Sbjct: 1183 RLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHT 1242

Query: 429  NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIV 487
            ++V SV FNP D +   SGS D  VR+W++   + +  +      V++V + PDG     
Sbjct: 1243 SWVNSVVFNP-DGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLAS 1301

Query: 488  GTMTGNCRFYDIKDNQLYQQNQ 509
            G+     R ++I  ++     Q
Sbjct: 1302 GSGDQTVRLWEISSSKCLHTFQ 1323

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
255555687	743	WD-repeat protein, putative [Ricinus com	0.964	0.689	0.600	1e-166
449452206	743	PREDICTED: uncharacterized protein LOC10	0.969	0.693	0.559	1e-149
359473960	729	PREDICTED: uncharacterized protein LOC10	0.958	0.698	0.573	1e-144
224053745	509	predicted protein [Populus trichocarpa]	0.591	0.616	0.777	1e-142
225455320	731	PREDICTED: uncharacterized protein LOC10	0.960	0.697	0.525	1e-139
225470952	753	PREDICTED: uncharacterized protein LOC10	0.951	0.670	0.530	1e-139
297742407	665	unnamed protein product [Vitis vinifera]	0.890	0.711	0.556	1e-137
302143934	674	unnamed protein product [Vitis vinifera]	0.860	0.678	0.513	1e-137
356527704	745	PREDICTED: WD repeat-containing protein	0.951	0.677	0.539	1e-137
356513249	720	PREDICTED: WD repeat-containing protein	0.947	0.698	0.534	1e-134

>gi|255555687|ref|XP_002518879.1| WD-repeat protein, putative [Ricinus communis] gi|223541866|gb|EEF43412.1| WD-repeat protein, putative [Ricinus communis]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 317/528 (60%), Positives = 389/528 (73%), Gaps = 16/528 (3%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVN 62
           G  +EEEEE+FFD+ EE S +SD  S+  E CSSS++    S+L  SQ E+W   P+SV 
Sbjct: 2   GNYSEEEEERFFDSREETSSMSDSGSNVYEDCSSSID-FDYSLLSESQYEVWIKSPESVY 60

Query: 63  ERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQ 122
           +RR +FLK M    DQ+ ++  D  +ES  +TQL +DR+ + +GAVLRTSG GD +  ++
Sbjct: 61  DRRDRFLKWMN--SDQNTISEGDSINESFTKTQLGIDRLMDTTGAVLRTSGLGDGLLSTE 118

Query: 123 SSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQS 182
           + +SS+  E  E LE  ++ D+  C I +   G + VV + DQD +   SRL++ GS+QS
Sbjct: 119 TPVSSQSSETQESLEDGSVDDNFVCTIRNLDDGTEFVVDELDQDGML--SRLRKVGSNQS 176

Query: 183 VSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA---MARIIDRHG 239
           +SF+EF  T G SS  VQ   S+   E+RDL++ K+K K  WL++LG     AR++DRHG
Sbjct: 177 LSFEEFQRTIGVSS-LVQRFSSKYGGEARDLIEEKKKTKGSWLRRLGKSNHAARVVDRHG 235

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
           +   K  D E      M+RV+VHP KK+S+ELSSLY+GQEFLAH+GSILTMKFS DGQYL
Sbjct: 236 ATAFKNNDRE------MQRVKVHPSKKRSKELSSLYSGQEFLAHDGSILTMKFSPDGQYL 289

Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
           ASGGED  VRVWKVIE +RLD F +Q  D SC+YFT+NHLS++  ++VDK K +KTK   
Sbjct: 290 ASGGEDSVVRVWKVIEDDRLDQFHIQANDTSCVYFTMNHLSEIASLNVDKMKSEKTKK-H 348

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
            SSD TCV+ PPKVFR+LEKPLHEF GHS EVLDLSWSK  FLLSSS DKTVRLWQVG D
Sbjct: 349 ISSDSTCVIFPPKVFRVLEKPLHEFHGHSGEVLDLSWSKKRFLLSSSVDKTVRLWQVGCD 408

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
           RCLRVFSHNNYVT V FNP+DDNYFISGSIDGKVRIWEV RC VVDYT IREIV+AVCY 
Sbjct: 409 RCLRVFSHNNYVTCVDFNPMDDNYFISGSIDGKVRIWEVIRCLVVDYTVIREIVTAVCYR 468

Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           P GKGGIVGTMTGNC FYDI DN+L   +QI LQGKKKL G+RITGF+
Sbjct: 469 PGGKGGIVGTMTGNCLFYDIIDNKLQLDSQISLQGKKKLTGRRITGFE 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452206|ref|XP_004143851.1| PREDICTED: uncharacterized protein LOC101204856 [Cucumis sativus] gi|449501765|ref|XP_004161452.1| PREDICTED: uncharacterized LOC101204856 [Cucumis sativus]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 296/529 (55%), Positives = 373/529 (70%), Gaps = 14/529 (2%)

Query: 1   MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLAD--SVLCYSQSEIWTGYP 58
           M  V  EEE E+F+DT EEIS VSD  SDCSE CS+S     D    L Y     W    
Sbjct: 2   MDLVYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPENLRYVG---WIRNL 58

Query: 59  QSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDI 118
           +SV ERR+KF K MG  LDQ+  N ++ E +S    ++  DRI E+ G VLR SG   ++
Sbjct: 59  ESVYERRNKFFKWMGLDLDQNFDNTDEEEGDS---WKVYRDRIIEDCGTVLRLSGSEGEL 115

Query: 119 HFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESG 178
             S  +ISS   EAPE   +  ++++ AC I +   G + +V    QD +   + L+E G
Sbjct: 116 S-SSLTISSMSNEAPESSGNVAVEENHACTIRNLDNGTEFIVDSFRQDGML--NMLREVG 172

Query: 179 SSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH 238
           S++S SFDEF    G S   VQ L  +  E++  +V+A+++ K+GWL+KLGA+A I+D +
Sbjct: 173 SNRSFSFDEFERNIGQSP-LVQQLFRKNVEKAGVIVNARKQAKKGWLRKLGAVACIVD-N 230

Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
           G   +K G    +    +++VRVHP KKQS+ELSSL+ GQEF AH+GSI TMKFS+DG+Y
Sbjct: 231 GEGAMKTGVSNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSVDGRY 290

Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
           LA+ GEDG VRVW+V+E  R D FD+ + DPS LYF++NHLS+L P+DV KE + KTK L
Sbjct: 291 LATAGEDGVVRVWQVLEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETLGKTK-L 349

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
           ++SS   CV+ PPK+FR+LEKPLHEF GHS EVLDLSWSK G LLSSS DKTVRLWQ+G 
Sbjct: 350 KRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGC 409

Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
           D CLRV+ HNNYVT V+FNP+D+N+FISGSIDGKVRIWEV  CQV+DY DIREIVSAVCY
Sbjct: 410 DTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVIDYIDIREIVSAVCY 469

Query: 479 CPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
            PDGKGGIVG+MTGNCRFY+I DN+L    QICL GKKK PGKRI GF+
Sbjct: 470 RPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFE 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473960|ref|XP_002263491.2| PREDICTED: uncharacterized protein LOC100249640 [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 305/532 (57%), Positives = 369/532 (69%), Gaps = 23/532 (4%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
           G S+EEE ++FFDT EE S   D  SD S    SS   V+  +DS   Y    +W   PQ
Sbjct: 2   GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54

Query: 60  SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
           SVNERR KFLK M   +DQ+ + +E+ E    D    + +++ DR TENSGAVLR S   
Sbjct: 55  SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114

Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
           D +   Q S+S +     E+LE    KD+  C+I +   G + VV     + +  + R  
Sbjct: 115 DRVSSIQCSMSFR-SNGEELLEGGIRKDNLPCKIKNLDDGTEFVVDKLGGNGMHGKPR-- 171

Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
           E GS++ VS +EF  T G S   VQ    R+ EE  + VD K+KVKRGWL++LGA+A + 
Sbjct: 172 EVGSNRVVSMEEFQRTIGLSP-LVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 230

Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
           DR G A    G    T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 231 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 286

Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
           G YLASGGEDG VRVWK+IE       D+QD DPS +YFT N  S+L P+DVDKEK  K 
Sbjct: 287 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 345

Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
           K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 346 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 405

Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 406 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 465

Query: 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           VCY PDGKGGIVG+M GNC FYDI DN L    QI LQGKKKLPGKRITGFQ
Sbjct: 466 VCYRPDGKGGIVGSMVGNCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQ 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053745|ref|XP_002297958.1| predicted protein [Populus trichocarpa] gi|222845216|gb|EEE82763.1| predicted protein [Populus trichocarpa]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/315 (77%), Positives = 270/315 (85%), Gaps = 1/315 (0%)

Query: 213 LVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS 272
           +V+AKRK KR WLKKLG   RIIDR G+A  KP D E T G +M RV+VHP KK ++ELS
Sbjct: 1   MVEAKRKAKRSWLKKLGLKGRIIDRQGTAASKPCDLESTTGAKMHRVKVHPSKKHTKELS 60

Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
           SL+TGQEFLAH+GSILTMKFSLDGQYLASGGEDG VRVWKVIE +R + FD+  TDPSCL
Sbjct: 61  SLFTGQEFLAHKGSILTMKFSLDGQYLASGGEDGVVRVWKVIEDDRSNQFDISATDPSCL 120

Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           YFT+NHLS+L  +DVDK+ IDKTK L  SSD TCVV+PPKVFR+LEKPLHEFQGH+ EVL
Sbjct: 121 YFTMNHLSELASLDVDKKVIDKTKRL-GSSDSTCVVVPPKVFRVLEKPLHEFQGHNCEVL 179

Query: 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452
           DLSWSK  FLLSSS DKTVRLWQVG DRCLRVFSHNNYVTSV FNPVDDNYFISGSIDGK
Sbjct: 180 DLSWSKKRFLLSSSIDKTVRLWQVGCDRCLRVFSHNNYVTSVDFNPVDDNYFISGSIDGK 239

Query: 453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512
           VRIWEV  C+VVDYTDIREIV+A CYCP GKGG+VGTMTGNC FYDI DN+L    QICL
Sbjct: 240 VRIWEVLGCRVVDYTDIREIVTAACYCPGGKGGLVGTMTGNCLFYDIIDNRLQLDAQICL 299

Query: 513 QGKKKLPGKRITGFQ 527
           QGKKKLPG+RITGF+
Sbjct: 300 QGKKKLPGRRITGFE 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455320|ref|XP_002271917.1| PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/529 (52%), Positives = 360/529 (68%), Gaps = 19/529 (3%)

Query: 6   NEEEEEQFFDTCEEISYVSDRDSD--CSEG--CSSSVEHLADSVLCYSQSEIWTGYPQSV 61
           NE+E+ Q+FD  +++   S  DS   C++    SS   + A     Y   ++W G P SV
Sbjct: 7   NEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQY---DVWAGSPGSV 63

Query: 62  NERRSKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHF 120
            ERR+KFL  MG  LD+ S  N+ D+  +S       VDR+ E+SGAVLRT GF D+   
Sbjct: 64  KERRNKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCS 120

Query: 121 SQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSS 180
           S+SS+S    E  E      L++   CRI +   GA+  V  ++  E    S  +E G  
Sbjct: 121 SRSSMSRWSNEQDES----GLQEKFVCRIGNLDVGAEFDV--DEMGEGSEVSEFREVGLD 174

Query: 181 QSVSFDEFLGTPGSS-SSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239
           + V+ +E      S  SS VQ +  R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG
Sbjct: 175 RLVTINECQNISDSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHG 234

Query: 240 SA-TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
               L   D     G R++RVRV   +KQ +ELS+LY GQ+  AHEGSIL+MKFS DG+Y
Sbjct: 235 EIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKY 294

Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
           LAS GEDG VR+W+V+E ER +  D+ + DP C+YFT+NHLS+L P+  +KEK+ K +SL
Sbjct: 295 LASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSL 354

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
           RK+SD  CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG 
Sbjct: 355 RKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGC 414

Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
           D CL++FSHNNYVT V FNPVDDNYFISGSIDGKVRIW +  CQVVD+TDIRE+V+AVCY
Sbjct: 415 DHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCY 474

Query: 479 CPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
            PDG+GGIVG+MTG CRFY++ DN L  ++Q+CL GKKK   KRITGFQ
Sbjct: 475 RPDGQGGIVGSMTGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQ 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470952|ref|XP_002264456.1| PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/528 (53%), Positives = 354/528 (67%), Gaps = 23/528 (4%)

Query: 8   EEEEQFFDTCEEISYVSDRDSDCSEGCSS---SVEHLADSVLCYSQSEIWTGYPQSVNER 64
           EEE+QFFDT E+I+ VSD  SDC E   S   + + ++ S  C    E+W   P+S+ ER
Sbjct: 7   EEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGC----EVWIKNPESIRER 62

Query: 65  RSKFLKLMGFILDQSLMNAEDLEDESRVRTQL--DVDRITENSGAVLRTSGFGDDIHFSQ 122
           R+KFLK MG  +D  +        E  V  +L  ++DRITENSGAVL  S          
Sbjct: 63  RTKFLKWMGLGVDHVVREVP----EELVSGELKGEIDRITENSGAVLGMS----SSDDGF 114

Query: 123 SSISSKLCEAPEVLEHF--TLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSS 180
           SS  S +C   +  +    +L+++  CRI     G + +V +  Q    + SRL+E GS+
Sbjct: 115 SSSQSSMCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQ--YGMLSRLREVGSN 172

Query: 181 QSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIID-RHG 239
           + V+ +EF  T G S   VQ +  ++ E++ + V+A ++ +RGW ++LGA+A I +    
Sbjct: 173 RVVTIEEFERTLGLSP-LVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIE 231

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
               KP      LG + + V+V P +++S+ELS+LY GQ+F+AHEGSILTMKFS DGQYL
Sbjct: 232 VGKFKPNGPYPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYL 291

Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
            S GED  VRVW V E ER DGFD  D D S  YFT+NHLS+L+PI  DKEK  K K+LR
Sbjct: 292 GSAGEDRVVRVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLR 351

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
           KS D  CV+ P KVF++LEKPLHEF GH  EVLD+SWSKN +LLSSS DKTVRLWQVG +
Sbjct: 352 KSLDAACVIFPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCN 411

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
           +CL+VFSHNNYVT V FNPVDDNYFISGSIDGKVRIWE+   QVVD+TDI EIV+AVCY 
Sbjct: 412 QCLKVFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYR 471

Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           PDGKG IVG+MTGNCRFYD  D++L     ICLQGKKK   KRITGFQ
Sbjct: 472 PDGKGVIVGSMTGNCRFYDASDDRLQLHALICLQGKKKSSFKRITGFQ 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742407|emb|CBI34556.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 296/532 (55%), Positives = 354/532 (66%), Gaps = 59/532 (11%)

Query: 3   GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
           G S+EEE ++FFDT EE S   D  SD S    SS   V+  +DS   Y    +W   PQ
Sbjct: 2   GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54

Query: 60  SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
           SVNERR KFLK M   +DQ+ + +E+ E    D    + +++ DR TENSGAVLR S   
Sbjct: 55  SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114

Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
           D +   Q S+S +                          G +L               L+
Sbjct: 115 DRVSSIQCSMSFR------------------------SNGEEL---------------LE 135

Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
             GS++ VS +EF  T G  S  VQ    R+ EE  + VD K+KVKRGWL++LGA+A + 
Sbjct: 136 GVGSNRVVSMEEFQRTIG-LSPLVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 194

Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
           DR G A    G    T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 195 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 250

Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
           G YLASGGEDG VRVWK+IE       D+QD DPS +YFT N  S+L P+DVDKEK  K 
Sbjct: 251 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 309

Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
           K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 310 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 369

Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
           VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 370 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 429

Query: 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           VCY PDGKGGIVG+M GNC FYDI DN L    QI LQGKKKLPGKRITGFQ
Sbjct: 430 VCYRPDGKGGIVGSMVGNCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQ 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143934|emb|CBI23039.3| unnamed protein product [Vitis vinifera]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/524 (51%), Positives = 343/524 (65%), Gaps = 67/524 (12%)

Query: 6   NEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERR 65
           NE+E+ Q+FD  +++   S                L+DS   Y   ++W G P SV ERR
Sbjct: 8   NEDEQYQYFDAHDDMDAAS----------------LSDSTFQY---DVWAGSPGSVKERR 48

Query: 66  SKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS 124
           +KFL  MG  LD+ S  N+ D+  +S       VDR+ E+SGAVLRT GF D+   S+SS
Sbjct: 49  NKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCSSRSS 105

Query: 125 ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQSVS 184
           I  ++ E  EV                   G D +V+ N+   I                
Sbjct: 106 I--EVSEFREV-------------------GLDRLVTINECQNIS--------------- 129

Query: 185 FDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA-TL 243
            D  L      SS VQ +  R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG    L
Sbjct: 130 -DSLL------SSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNL 182

Query: 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
              D     G R++RVRV   +KQ +ELS+LY GQ+  AHEGSIL+MKFS DG+YLAS G
Sbjct: 183 TTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAG 242

Query: 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363
           EDG VR+W+V+E ER +  D+ + DP C+YFT+NHLS+L P+  +KEK+ K +SLRK+SD
Sbjct: 243 EDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSD 302

Query: 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR 423
             CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG D CL+
Sbjct: 303 SACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLK 362

Query: 424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483
           +FSHNNYVT V FNPVDDNYFISGSIDGKVRIW +  CQVVD+TDIRE+V+AVCY PDG+
Sbjct: 363 IFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQ 422

Query: 484 GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           GGIVG+MTG CRFY++ DN L  ++Q+CL GKKK   KRITGFQ
Sbjct: 423 GGIVGSMTGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQ 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527704|ref|XP_003532448.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/526 (53%), Positives = 355/526 (67%), Gaps = 21/526 (3%)

Query: 7   EEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRS 66
           EEEE+QF++T EE+  VSD  SDCSE   SS  +        ++ ++W    +SV++RR 
Sbjct: 28  EEEEDQFYETREELCSVSDGGSDCSESDESSSGNNGH----VTRYQVWAQNLESVHQRRL 83

Query: 67  KFLKLMGFILDQSL-MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS- 124
            FL+ MG   D +  M  E+L D+        +DRIT  SGAVLRTS F  +     +S 
Sbjct: 84  NFLRWMGLESDLNYSMKGEELGDQP-----CGIDRITATSGAVLRTS-FAIEEGLPSTSN 137

Query: 125 ---ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQ 181
              + S   EA    E+   +++ AC I +   G + +V    QD     S L+  GS+Q
Sbjct: 138 QIVLDSLSDEASGSQEN---RENLACMIRNLDDGTEYIVDKLGQDGAP--STLRVLGSNQ 192

Query: 182 SVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA 241
            +S +EF    G SS F++    R  E +R L   KRK+KRGWL+KL ++A  +  HG  
Sbjct: 193 LISLEEFQKNIGPSS-FIRRHLQRDTENTRLLGVGKRKMKRGWLRKLDSIACFVHNHGFD 251

Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
             K  D +      ++RVRVH  +K+ +ELSSLYT QEF AH+G ILTMKFSLDG+YLAS
Sbjct: 252 ETKCKDCDSVDRSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLAS 311

Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
           GGEDG VRVWKVIE ER    D+ D DPS +YF IN+ S + P+DVDKEK+ KT+ LR+S
Sbjct: 312 GGEDGMVRVWKVIEDERSSELDILDNDPSNIYFKINNFSCVAPLDVDKEKLVKTEKLRRS 371

Query: 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC 421
           S+ TCV++PPK FR+  KPLHEFQGHSS+++DL+WSK GFLLSSS DKTVRLW VGIDRC
Sbjct: 372 SEATCVIVPPKTFRISAKPLHEFQGHSSDIIDLAWSKRGFLLSSSVDKTVRLWHVGIDRC 431

Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
           LRVF HNNYVT V FNPV+DN+FISGSIDGKVRIWEV  C+V DY DIREIV+AVC+ PD
Sbjct: 432 LRVFYHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFRPD 491

Query: 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           GKG IVGTM GNCRFYDI DN L    Q+CL+GKKK  GK+ITGFQ
Sbjct: 492 GKGTIVGTMAGNCRFYDIVDNHLQLDAQLCLRGKKKTSGKKITGFQ 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513249|ref|XP_003525326.1| PREDICTED: WD repeat-containing protein YMR102C-like [Glycine max]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/528 (53%), Positives = 350/528 (66%), Gaps = 25/528 (4%)

Query: 7   EEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRS 66
           EEEE+QF++T EE+  VSD  SDCSE   SS  +        ++ ++W    +SV++RR 
Sbjct: 2   EEEEDQFYETREELCSVSDVGSDCSESDESSSGNNGH----VTRYQVWAKKLESVHQRRL 57

Query: 67  KFLKLMGFILDQSL-MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQS-- 123
            FL+ M    D +  M  E+L D+        +DRIT  SGAVLRTS   ++   S S  
Sbjct: 58  NFLRWMDLESDLNYSMKGEELGDQP-----CGIDRITATSGAVLRTSFAVEEGLPSTSNQ 112

Query: 124 ----SISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS 179
               S+S +   + E  E+       AC I +   G   +V    QD     S L+  GS
Sbjct: 113 IVLDSLSDEASGSQENCENL------ACMIRNLDDGTQYIVDKLGQDGAP--STLRVLGS 164

Query: 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239
           +Q +S +EF    G SS FV+    R  E +R L   KRK+KRGWL+KL ++A  +  HG
Sbjct: 165 NQLISLEEFQRNIGPSS-FVRRHLQRDTENTRLLRVGKRKMKRGWLRKLDSIACFVHNHG 223

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
               K  D +      ++RVRVH  +K+ +ELSSLYT QEF AH+G ILTMKFSLDG+YL
Sbjct: 224 LDETKYKDCDSVDRSGVQRVRVHSYRKRVKELSSLYTEQEFKAHKGVILTMKFSLDGKYL 283

Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
           ASGGEDG VRVWKV+E ER    D+ D D S +YF IN+ S + P+DVDKEK+ KT+ LR
Sbjct: 284 ASGGEDGMVRVWKVVEDERSSELDILDDDASNIYFKINNFSCVAPLDVDKEKLVKTEKLR 343

Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
           +SS+ TCV++PPK FR+  KPLHEFQGHS ++LDL+WSK GFLLSSS DKTVRLW VGID
Sbjct: 344 RSSEATCVIVPPKTFRISSKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGID 403

Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
           RCLRVFSHNNYVT V FNPV+DN+FISGSIDGKVRIWEV  C+V DY DIREIV+AVC+ 
Sbjct: 404 RCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFR 463

Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
           PDGKG IVGTM  NCRFYDI DN L    Q+CL+GKKK  GK+ITGFQ
Sbjct: 464 PDGKGTIVGTMASNCRFYDIVDNHLQLDVQLCLRGKKKTSGKKITGFQ 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.772	0.587	0.460	1.8e-99
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.674	0.504	0.551	2.8e-98
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.668	0.548	0.528	6.6e-97
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.617	0.501	0.525	7.7e-97
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.508	0.327	0.5	5e-79
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.504	0.303	0.501	4.1e-73
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.519	0.305	0.442	9.1e-67
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.549	0.322	0.449	2.7e-65
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.286	0.256	0.532	7.7e-50
POMBASE|SPAC3H5.08c	933	SPAC3H5.08c "WD repeat protein	0.340	0.193	0.408	1.2e-38

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 196/426 (46%), Positives = 272/426 (63%)

Query:   104 NSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSD- 162
             N  AVL +    DD  FS S   S      E ++     + + C+ ++    + +V+ + 
Sbjct:    84 NESAVLMSLKSDDD-EFSSSRCDS--FSPSESVDRVV--NESLCK-EEGEVDSGMVLRNL 137

Query:   163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR 222
                D+ +I S L  S SS  VS D+ +   G       P+ +   EE R++    ++VK 
Sbjct:   138 GFVDDGDISSSLC-SLSSSPVS-DKIVKEHGEPKLLPDPMVA---EEEREVSGIMKRVKE 192

Query:   223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA 282
              WL +L    ++ ++  +     G      G R+ RV+V   KK+++ELS+L+ GQE  A
Sbjct:   193 KWLSRL---YKVRNKRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSALFKGQEIQA 249

Query:   283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
             HEG+IL MKFS DG+YLAS GEDG +RVW V+E ER +  DV   DPSC+YF ++ LS+L
Sbjct:   250 HEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSEL 309

Query:   343 IPIDVDKEKIDKT-KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
              P+ V+K+ I  +  S RK+++  CV++PPK+FR+L+KPLHEF GHS ++LD+SWSKN  
Sbjct:   310 RPVAVEKDGITGSLMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNR 369

Query:   402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
             LLS+S D +VRLWQ+G + CL +FSHNNYVTSV FNPVDD++FISGSIDGKVRIW   +C
Sbjct:   370 LLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQC 429

Query:   462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521
             QVVD+ D R IV+AVCY PDG+  I+GT+T +CRFY++  + L     ICL  KKK   K
Sbjct:   430 QVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNK 489

Query:   522 RITGFQ 527
             RI GFQ
Sbjct:   490 RIIGFQ 495

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 204/370 (55%), Positives = 253/370 (68%)

Query:   163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSS-SFVQPLPSRQDEESRDLVDAKRKVK 221
             N    I+ +  L    SS S S  E L    SS       LP+     SR   ++ +K  
Sbjct:   141 NRAKNIDDQILLTRDYSSNSSSIAEGLSESDSSRFDSYGDLPN--SPMSR-YEESPKKGA 197

Query:   222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV-RVHPVKKQSRELSSLYTGQEF 280
             +GWLKKLG +  ++D+    T    D E T     R++ RV   KKQ +ELSSL  GQEF
Sbjct:   198 KGWLKKLGVLTHVLDKTEECT----DGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEF 253

Query:   281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHL 339
              AH+GSI+ MKFS DG+YLAS GED  VRVW +IE ER D  F+V ++D SC+YF +N  
Sbjct:   254 SAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYFGMNDK 313

Query:   340 SQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
             SQ+ P+  + EKI+K++ L RK S+ TC VLP KVF + E P HEF+GH+ E+LDLSWS+
Sbjct:   314 SQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSE 373

Query:   399 NGFLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
              GFLLSSS D+TVRLW+VG  D C+RVFSH ++VT VAFNPVDDNYFISGSIDGKVRIW+
Sbjct:   374 KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433

Query:   458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517
             V + +VVDYTDIR+IV+A+CY PDGKG +VG+MTG CRFY   DNQL     I L GKKK
Sbjct:   434 VSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHTTDNQLQLDRDISLHGKKK 493

Query:   518 LPGKRITGFQ 527
             +P KRITGFQ
Sbjct:   494 VPNKRITGFQ 503

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 195/369 (52%), Positives = 254/369 (68%)

Query:   160 VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219
             VS +D D+  + +R   S S+ ++       +   S SF     S   +  RD  D  +K
Sbjct:   106 VSSSDTDDQTLLARNDASSSTSTMPGGLSESSSSKSGSFGDFHNSPFSQ--RD--DLLKK 161

Query:   220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE 279
               + WLKKLG +  +++     +++   H++       RV+ H  KKQ +ELSS+   QE
Sbjct:   162 GAKSWLKKLGVLTHVLESMDCESVRTQLHQVA------RVQTH--KKQFKELSSMCIDQE 213

Query:   280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
             F AH+GSIL MKFS DG+Y+AS GED  VRVW + E ER D ++V + D S +YF +N  
Sbjct:   214 FSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVD-SGVYFGMNQR 272

Query:   340 SQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
             SQ+ P+ ++ EK +K  S LRKSSD TCVVLPP +F + EKPLHEF+GH  E+LDLSWS+
Sbjct:   273 SQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSE 332

Query:   399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
              G+LLSSS D+TVRLW+VG D CLR F+HNN+VT VAFNPVDDNYFISGSIDGKVRIW+V
Sbjct:   333 KGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392

Query:   459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518
              RC+VVDYTDIR+IV+AVCY PD KG ++G+MTGNCRFY I +NQL    +I + GKKK+
Sbjct:   393 TRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKV 452

Query:   519 PGKRITGFQ 527
               KRI+G Q
Sbjct:   453 ASKRISGLQ 461

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
 Identities = 178/339 (52%), Positives = 242/339 (71%)

Query:   194 SSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH--GSATLKPGDHELT 251
             SSS + Q    ++ E+ R++       K+GWL +L +M    D +      ++       
Sbjct:   135 SSSRYCQV---KETEKQRNIAGLVTSFKKGWLSRLRSMGCTADTNIESGGRMRASSG--- 188

Query:   252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
              G  + RV+V   KKQ++ELS+LY  Q+  AH+G+IL MKFS DG++LAS GEDG VRVW
Sbjct:   189 YGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248

Query:   312 KVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-KSLRKSSDLTCVV 368
             KV+E +  RL    + + DPSC+YF +N LSQL P+ V++EK  KT +S RK+SD  CVV
Sbjct:   249 KVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSACVV 308

Query:   369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN 428
              PPKVFR++EKPL+EF+GH+ EVLD+SWSK+ +LLS+S DKTVRLW+VG + CL VF+HN
Sbjct:   309 FPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHN 368

Query:   429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
             +YVTSV FNPV++NYF+SGSIDGKVRIW +  C VVD+ D+++I+SAVCY PDG+GGI+G
Sbjct:   369 SYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIG 428

Query:   489 TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
             ++ G+CRF+++    L   +QI L  KKK   KRITGFQ
Sbjct:   429 SLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQ 467

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.0e-79, Sum P(3) = 5.0e-79
 Identities = 138/276 (50%), Positives = 184/276 (66%)

Query:   258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
             RV+V    K  +EL++L+  QE  AH+GSI ++KFSLDG+YLAS GED  +++WKV+E E
Sbjct:   337 RVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESE 396

Query:   318 R---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374
             R   L   D Q+     L+   N   +  P+ +  ++  +T   RKS  L  V++P  VF
Sbjct:   397 RKGELLSMDKQEDGSINLFLLANGSPE--PVSMSPKRRGRTSFSRKSVSLDNVLVPEAVF 454

Query:   375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
              L EKP+  F GH  +VLDLSWSK+  LLSSS DKTVRLW +    CL+VFSH++YVT +
Sbjct:   455 GLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCI 514

Query:   435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
              FNPVDDNYFISGS+D KVRIW +   QVVD+ D+ E+V+A CY PDG+G +VG+  G C
Sbjct:   515 QFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGTC 574

Query:   495 RFYDIKDNQLYQQNQICLQG-KKKLPGKRITGFQVV 529
               Y+  DN+L Q+ +I L+  KKK   K+ITGFQ V
Sbjct:   575 CLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFV 610

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 137/273 (50%), Positives = 180/273 (65%)

Query:   258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
             RVRV    K S+EL++LY  QE  AH GSI ++KFSLDG+YLAS GED  + +W+V+E E
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377
             +  G  + D  P  L    N   +  P  +   +  +T   RKS  L  + +P  +F L 
Sbjct:   447 K-KGELLLDR-PELLLLATNGSPE--PTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLS 502

Query:   378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
             EKP   FQGH  +VLDL+WSK+  LLSSS DKTVRLW +    CL+VFSH++YVT + FN
Sbjct:   503 EKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFN 562

Query:   438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
             PVDD YFISGS+D KVR+W +   QVVD+ D+ E+V++ CY PDG+G +VG+  G+CR Y
Sbjct:   563 PVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMY 622

Query:   498 DIKDNQLYQQNQICLQGKKKLPG-KRITGFQVV 529
                DN+L Q++QI LQ KKK    K+ITGFQ V
Sbjct:   623 SASDNKLQQKSQINLQNKKKKAHQKKITGFQFV 655

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 9.1e-67, Sum P(3) = 9.1e-67
 Identities = 128/289 (44%), Positives = 182/289 (62%)

Query:   244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
             K  DH+   G+    V+V P  K  +ELS+L+  QE  AHEG++ T+KFS D  YLASGG
Sbjct:   366 KGKDHKH--GKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGG 423

Query:   304 EDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360
              D  + VW+V E E +   +G  +    PS    + N ++      V+K+K  K  S R+
Sbjct:   424 ADRVIHVWEVQECELMSMNEG-SLTPIHPSLCDSSGNEITV-----VEKKKKGKGSSGRR 477

Query:   361 SSDLTCVV-LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
              + +   V +P  VF   +KP+   +GH   +LDLSWSK+  LLSSS DKTVRLW +   
Sbjct:   478 HNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETK 537

Query:   420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
              CL++F+HN+YVT + F+PVD+NYF+SGS+D K+RIW ++   VV+++D+ E+V+A CY 
Sbjct:   538 TCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYT 597

Query:   480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR-ITGFQ 527
             PDG+G ++G+  G CR YD +D +L Q NQI +Q  KK   KR IT FQ
Sbjct:   598 PDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQ 646

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
 Identities = 133/296 (44%), Positives = 180/296 (60%)

Query:   236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
             D  GS T  P   E    Q  + V+V    K  ++LS+L+  QE  AH+G I TMKFS D
Sbjct:   363 DSTGSGTSSPKVAEKNNEQANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPD 422

Query:   296 GQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLS-QLIPIDVDKEKI 352
                LAS GED  + VW+V E E   ++   +    PS    T          +  DK+K 
Sbjct:   423 SHLLASAGEDCAIHVWEVQECEIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKK 482

Query:   353 DKTKSLRKSSDLTCVVLPPK-VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
              KT   +K + +   V  P+ VF L +KP+  F GH  +VLDLSWS++  LLSSS DKTV
Sbjct:   483 GKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTV 542

Query:   412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471
             RLW +    CL++F+HN+YVT V FNP+D++YFISGS+D K+RIW +   QVV++ D++E
Sbjct:   543 RLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKE 602

Query:   472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527
             +V+AVCY PDG+   VG++ G+CR Y  +D +L Q NQI LQ KKK   K+IT FQ
Sbjct:   603 MVTAVCYTPDGQAAFVGSINGHCRLYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQ 658

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 81/152 (53%), Positives = 107/152 (70%)

Query:   367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426
             V+ P K F + E P  E  GH+ +VLDL+WS +  LLS+S DKTVRLW+ G D+CL VF 
Sbjct:   251 VLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFH 310

Query:   427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486
             HNNYVT V FNPV+ N F SGSIDGK RIW +   +VV +TD+R+ +SA+ Y P+G G +
Sbjct:   311 HNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFV 370

Query:   487 VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518
             VG +TGNCRFY I DN +    QI ++G+ ++
Sbjct:   371 VGCITGNCRFYQILDNDVIMDEQILIRGRNRI 402

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

POMBASE|SPAC3H5.08c SPAC3H5.08c "WD repeat protein, human WDR44 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 366 (133.9 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
 Identities = 74/181 (40%), Positives = 105/181 (58%)

Query:   347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS 406
             +D E      S   SSD     L  K     E P+ E+ GH++++LDLSWS+N FLLSSS
Sbjct:   346 LDSEHARSVASETCSSDPNNPKLNLKAPVFSEAPIREYAGHTADILDLSWSRNNFLLSSS 405

Query:   407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466
              DKT RLW      CL  F H+++VTS+AF+P DD +F+SGS+D K+R+W ++   V  +
Sbjct:   406 MDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFW 465

Query:   467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526
              ++ E+++AV + PDG   I GT  G C FYD +  +   Q  I     K   G ++TG 
Sbjct:   466 NELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGI 525

Query:   527 Q 527
             Q
Sbjct:   526 Q 526

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0044732 "mitotic spindle pole body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037226001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (732 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	531
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	7e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (309), Expect = 2e-31
 Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           +    H G +  + FS DG+ LA+G  DGT++VW +                  L     
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-------------ETGELLRTLKG 49

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
           H   +  +       D T     SSD T      +++ L   + +    GH+S V  +++
Sbjct: 50  HTGPVRDVAASA---DGTYLASGSSDKTI-----RLWDLETGECVRTLTGHTSYVSSVAF 101

Query: 397 SKNGFLL-SSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
           S +G +L SSS DKT+++W V   +CL     H ++V SVAF+P D  +  S S DG ++
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160

Query: 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
           +W++R  + V   T     V++V + PDG+  +  +  G  + +D+   +    
Sbjct: 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  109 bits (274), Expect = 1e-26
 Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 30/212 (14%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           +    H   + ++ FS DG+ L+S   D T++VW V                 CL     
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-------------TGKCLTTLRG 133

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
           H        V+        +   SS     +   K++ L   K +    GH+ EV  +++
Sbjct: 134 HTD-----WVNSVAFSPDGTFVASSSQDGTI---KLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 397 SKNGF-LLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
           S +G  LLSSS+D T++LW +   +CL     H N V SVAF+P D     SGS DG +R
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIR 244

Query: 455 IWEVRRCQVVDYTDIR---EIVSAVCYCPDGK 483
           +W++R  + V    +      V+++ + PDGK
Sbjct: 245 VWDLRTGECV--QTLSGHTNSVTSLAWSPDGK 274

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (271), Expect = 3e-26
 Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 30/236 (12%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H G +  +  S DG YLASG  D T+R+W +   E +       +  S +    +   ++
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV--AFSPDGRI 107

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDLSWSKNG- 400
           +                 S D T      KV+ +   K L   +GH+  V  +++S +G 
Sbjct: 108 L--------------SSSSRDKTI-----KVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
           F+ SSS D T++LW +   +C+   + H   V SVAF+P D    +S S DG +++W++ 
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLS 207

Query: 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514
             + +         V++V + PDG     G+  G  R +D++  +  Q     L G
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ----TLSG 259

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.7 bits (223), Expect = 6e-20
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 29/185 (15%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                H   + ++ FS DG ++AS  +DGT+++W +                 C+     
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL-------------RTGKCVATLTG 175

Query: 338 HLSQL--IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDL 394
           H  ++  +    D EK+  +     SSD T      K++ L   K L   +GH + V  +
Sbjct: 176 HTGEVNSVAFSPDGEKLLSS-----SSDGTI-----KLWDLSTGKCLGTLRGHENGVNSV 225

Query: 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452
           ++S +G  L S S D T+R+W +    C++  S H N VTS+A++P D     SGS DG 
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284

Query: 453 VRIWE 457
           +RIW+
Sbjct: 285 IRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.5 bits (197), Expect = 4e-16
 Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 29/251 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336
           +    H  S+ ++ FS DG+ LASG   DGT+++W +   + L          S L F+ 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 337 NHLSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPP--------------KVF 374
           +    +     D                +L   SD       P              +++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268

Query: 375 RL--LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HN 428
            L      L    GHSS VL +++S +G  L S S+D TVRLW +   + L   +   H 
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
             V+S++F+P        GS DG +R+W++R  + +   +    V +V + PDG+    G
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388

Query: 489 TMTGNCRFYDI 499
           +  G  R +D+
Sbjct: 389 STDGTVRLWDL 399

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 4e-15
 Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 33/277 (11%)

Query: 264 VKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER-LDGF 322
           +   S       +      HE SI ++ FS DG+ L SG  DGT+++W +   E+ +   
Sbjct: 45  LLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL 104

Query: 323 DVQDTDPSCLYFTINHLSQLIPI------------DVDKEKIDKTKSLRKSSDLTCVVLP 370
           +             +     I +            D+             S  +T +   
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 371 P---------------KVFRLLE-KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVR 412
           P               K++ L   KPL    GH+  V  L++S +G   + S S+D T+R
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-- 470
           LW +   + LR     +  + V+    D +   SGS DG +R+W++R    +  T     
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
             V +V + PDGK    G+  G  R +D++  +L   
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
                +GH+  V  +++S +G  L + S D T+++W +     LR    H   V  VA +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMT-GNCR 495
             D  Y  SGS D  +R+W++   + V   T     VS+V + PDG+  +  +      +
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIK 118

Query: 496 FYDIKDNQL 504
            +D++  + 
Sbjct: 119 VWDVETGKC 127

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
           +L +         H G + ++ FS DG+ L S   DGT+++W           D+     
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----------DLSTGKC 211

Query: 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHS 388
                   H + +  +            L  S      +   +V+ L   + +    GH+
Sbjct: 212 LGTL--RGHENGVNSVAFSP-----DGYLLASGSEDGTI---RVWDLRTGECVQTLSGHT 261

Query: 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQ 415
           + V  L+WS +G  L S SAD T+R+W 
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 27/219 (12%)

Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
           P    L  G     +R+  ++  S  L +L        H  S+L++ FS DG+ LASG  
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS------GHSSSVLSVAFSPDGKLLASGSS 304

Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
           DGTVR+W           D++            H   +  +    +          S D 
Sbjct: 305 DGTVRLW-----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG--SDDG 351

Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR 423
           T      +++ L      +     S VL +S+S +G ++SS S D TVRLW +     LR
Sbjct: 352 TI-----RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 424 VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
               H + VTS+ F+P D     SGS D  +R+W+++  
Sbjct: 407 NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
            K L   +GH+  V  +++S +G  L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           +    H G + ++ FS DG  LASG +DGTVRVW 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
           + L   +GH+  V  +++S +G +L S S D T++LW
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           +    H G + ++ FS DG+YLASG +DGT+++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
             L+    H   VTSVAF+P D  Y  SGS DG +++W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           + LR    H   VTSVAF+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 380 PLHEFQGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
           P+   QGH+ +V  +S+  S    L S+ AD  V +W V   + + V   H++ +TS+ +
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV 464
           N +D +   + S D K+ I + R   +V
Sbjct: 177 N-LDGSLLCTTSKDKKLNIIDPRDGTIV 203

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 280 FLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
              HEG + ++ FS DG  L SGG +DGT+R+W              D        T+  
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW--------------DLRTGKPLKTLEG 369

Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
            S ++ +       D       S+D T  +            L    GH+S V  L +S 
Sbjct: 370 HSNVLSVSF---SPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGHTSRVTSLDFSP 422

Query: 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
           +G  L S S+D T+RLW +        FS +  V +   + 
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 17/93 (18%)

Query: 380 PLHEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQVGID----------RCLRVFSH 427
           P+ + +GH+S +LDL ++   +  L S S D T+R+W++  +          +C+ +  H
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGH 124

Query: 428 NNYVTSVAFNPVDDNYFI--SGSIDGKVRIWEV 458
              ++ + +NP+  NY+I  S   D  V IW++
Sbjct: 125 KKKISIIDWNPM--NYYIMCSSGFDSFVNIWDI 155

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	531
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.91
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.88
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.88
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0289	506	consensus mRNA splicing factor [General function p	99.86
KOG0643	327	consensus Translation initiation factor 3, subunit	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.86
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.85
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG1539	910	consensus WD repeat protein [General function pred	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG2055	514	consensus WD40 repeat protein [General function pr	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.81
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.79
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG2048	691	consensus WD40 repeat protein [General function pr	99.78
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.78
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.77
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG1539	910	consensus WD repeat protein [General function pred	99.76
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.76
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.76
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.76
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.74
KOG0639	705	consensus Transducin-like enhancer of split protei	99.74
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.73
KOG2055	514	consensus WD40 repeat protein [General function pr	99.72
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG1273	405	consensus WD40 repeat protein [General function pr	99.71
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.68
KOG0646	476	consensus WD40 repeat protein [General function pr	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.67
KOG4328	498	consensus WD40 protein [Function unknown]	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.64
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.63
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG2048	691	consensus WD40 repeat protein [General function pr	99.61
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.61
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.6
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.59
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.58
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.57
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.56
KOG4227	609	consensus WD40 repeat protein [General function pr	99.56
COG2319	466	FOG: WD40 repeat [General function prediction only	99.55
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.55
PRK01742	429	tolB translocation protein TolB; Provisional	99.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.52
KOG1188	376	consensus WD40 repeat protein [General function pr	99.51
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.5
KOG1310	758	consensus WD40 repeat protein [General function pr	99.49
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.49
KOG1963	792	consensus WD40 repeat protein [General function pr	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
PRK03629	429	tolB translocation protein TolB; Provisional	99.47
PRK11028	330	6-phosphogluconolactonase; Provisional	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
KOG0649	325	consensus WD40 repeat protein [General function pr	99.41
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.41
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.4
PRK11028	330	6-phosphogluconolactonase; Provisional	99.4
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.39
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.38
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.37
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.37
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.36
KOG1963	792	consensus WD40 repeat protein [General function pr	99.35
PRK01742	429	tolB translocation protein TolB; Provisional	99.34
PRK05137	435	tolB translocation protein TolB; Provisional	99.33
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.32
KOG1334	559	consensus WD40 repeat protein [General function pr	99.31
KOG2321	703	consensus WD40 repeat protein [General function pr	99.31
PRK04922	433	tolB translocation protein TolB; Provisional	99.31
PRK03629	429	tolB translocation protein TolB; Provisional	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.25
PRK02889	427	tolB translocation protein TolB; Provisional	99.24
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.21
KOG2139	445	consensus WD40 repeat protein [General function pr	99.2
PRK04792	448	tolB translocation protein TolB; Provisional	99.2
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.19
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.18
KOG2321	703	consensus WD40 repeat protein [General function pr	99.18
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.17
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.16
KOG1334	559	consensus WD40 repeat protein [General function pr	99.16
PRK01029	428	tolB translocation protein TolB; Provisional	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.13
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.1
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.06
PRK04792	448	tolB translocation protein TolB; Provisional	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.04
KOG2315	566	consensus Predicted translation initiation factor	99.02
KOG4547	541	consensus WD40 repeat-containing protein [General	99.01
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.94
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.92
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.91
KOG2315	566	consensus Predicted translation initiation factor	98.88
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.81
PRK01029	428	tolB translocation protein TolB; Provisional	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.78
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.74
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.7
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.66
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.65
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.63
KOG2314	698	consensus Translation initiation factor 3, subunit	98.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.58
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.58
COG4946	668	Uncharacterized protein related to the periplasmic	98.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.56
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.56
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.54
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
COG4946	668	Uncharacterized protein related to the periplasmic	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.42
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.42
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.39
PRK04043	419	tolB translocation protein TolB; Provisional	98.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.31
KOG2695	425	consensus WD40 repeat protein [General function pr	98.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.27
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.27
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.12
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.03
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.99
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.94
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.93
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.86
KOG2314	698	consensus Translation initiation factor 3, subunit	97.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.79
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.68
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.67
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.62
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.59
KOG3621	726	consensus WD40 repeat-containing protein [General	97.58
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.57
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.57
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.44
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.42
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.37
PRK02888	635	nitrous-oxide reductase; Validated	97.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.36
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.33
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.3
KOG3621	726	consensus WD40 repeat-containing protein [General	97.29
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.22
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.16
PRK02888	635	nitrous-oxide reductase; Validated	97.14
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.14
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.11
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.98
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.93
COG3391	381	Uncharacterized conserved protein [Function unknow	96.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.88
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.88
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.81
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.6
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.49
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.36
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.32
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.97
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.95
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.85
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.76
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.68
COG3391	381	Uncharacterized conserved protein [Function unknow	95.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.66
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.34
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.27
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.24
PRK13616	591	lipoprotein LpqB; Provisional	95.11
KOG2395	644	consensus Protein involved in vacuole import and d	94.9
KOG2444	238	consensus WD40 repeat protein [General function pr	94.79
KOG2395	644	consensus Protein involved in vacuole import and d	94.75
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.62
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.04
PRK13616	591	lipoprotein LpqB; Provisional	93.96
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.87
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.84
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.58
PHA02713	557	hypothetical protein; Provisional	93.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.17
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.05
KOG2444	238	consensus WD40 repeat protein [General function pr	92.96
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.92
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.64
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.43
PHA03098	534	kelch-like protein; Provisional	91.99
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.96
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.91
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.66
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.5
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.12
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.67
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.65
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.58
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.28
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.22
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.04
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	88.75
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.6
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.09
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.35
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.31
PRK13684	334	Ycf48-like protein; Provisional	86.95
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	86.61
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.74
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.68
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.67
COG5167	776	VID27 Protein involved in vacuole import and degra	84.98
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.6
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.46
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	83.29
PHA02790	480	Kelch-like protein; Provisional	82.96
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.02
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.66
KOG2247	615	consensus WD40 repeat-containing protein [General	80.49
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.19
PF14727	418	PHTB1_N: PTHB1 N-terminus	80.04

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-58  Score=476.41  Aligned_cols=477  Identities=43%  Similarity=0.721  Sum_probs=348.0

Q ss_pred             CCCCCcccccccccccccccccCCCCCCCCCCCCCCccccccccccCCCccccccCCCCChHHHHHHHHHHhccccccc-
Q 009614            1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQS-   79 (531)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-   79 (531)
                      |+.+.+||| |+|||+.|+++.                           .|+||+..|+||.|||+|||++||  |+.. 
T Consensus         1 ~~~~~~ee~-~~f~~~~~~~~~---------------------------~~~~w~~~p~sv~err~~~l~~mg--ls~~~   50 (712)
T KOG0283|consen    1 MGAPGEEEE-DRFFDASERVSP---------------------------DYDLWTSSPGSVSERRRKFLNGMG--LSSKK   50 (712)
T ss_pred             CCCcccccc-ccccccccccCc---------------------------chhhhhcCccchhHHHHHHhhhhc--ccccc
Confidence            566666444 999999999961                           099999999999999999999999  6643 


Q ss_pred             cccccCC-CcccccccccccccccccCCceeccCCCCCCcccccCCCCcccCCCccccccccccCCcceeeeecCCCcee
Q 009614           80 LMNAEDL-EDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADL  158 (531)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~  158 (531)
                      ......+ ..........++.-...  ..|......+.+-.+ .+|....             .....+..  ++.|.++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~s~~~~-------------~~~~~~~~--~~~~~e~  112 (712)
T KOG0283|consen   51 TLSRSETVDRLSSSSVESNVDESNH--NSVEDTDSEQCRPSS-SSSKSRV-------------SQSSSSIE--LDTGDEF  112 (712)
T ss_pred             ccccccccccccccccccccccccc--ccccccccccCCccc-ccccccc-------------ccccccee--eccccee
Confidence            2221111 11111110111100000  000000000000000 1111100             01111111  6899999


Q ss_pred             EEccCCCchhhhhhcccccCCCCcccccccccCCCCCccccccCCccccccc-----------hhh--HHhhhhhccccc
Q 009614          159 VVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEES-----------RDL--VDAKRKVKRGWL  225 (531)
Q Consensus       159 ~~~~~~~~~~~~~~~lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~-----------~~~--~~~~k~~~~~w~  225 (531)
                      ++++...++.++.  +.+++.+...++++|+.+.+.++. +.++++++..+.           ...  ....++....|+
T Consensus       113 ~v~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l  189 (712)
T KOG0283|consen  113 SVSENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWL  189 (712)
T ss_pred             eEeeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhh
Confidence            9999999999987  999999999999999999988888 888888665430           111  111333445588


Q ss_pred             cccccceeeeccccc---eeeeCCCCe-----E--EeeecC--------CeEEEEeCCCCcccccccccceEEc-ccCCC
Q 009614          226 KKLGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGS  286 (531)
Q Consensus       226 ~~~~~~~~~~~~~~s---~~fspdg~~-----l--asgs~d--------g~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~  286 (531)
                      +.++.+++.......   ..+..+..-     +  .++..+        ..+++-...+...++..++..|++. +|.++
T Consensus       190 ~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~ga  269 (712)
T KOG0283|consen  190 KSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGA  269 (712)
T ss_pred             hhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCc
Confidence            888877766554311   111122111     1  111111        5788888888899999999999999 99999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc-cccccccccCCCce
Q 009614          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-IDKTKSLRKSSDLT  365 (531)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  365 (531)
                      |++|+||+||+|||+||.||.|+||.+...+.   +........++.+..+....+-+....... ..............
T Consensus       270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             EEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            99999999999999999999999999977554   223333444444444433333333222211 11222233344444


Q ss_pred             EEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                      ..+.+...+.+..+|++.+.||.+.|++|.|+.+++|+++++|++||||++....|+++|.|++.||||+|+|.|.+||+
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence            48889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG  525 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~  525 (531)
                      +|+.||+||||++...+++.|.+....|+++||+|||++.++|+.+|.|++|++...++++..++.++.+||.++++|||
T Consensus       427 SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG  506 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG  506 (712)
T ss_pred             ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 009614          526 FQVVKI  531 (531)
Q Consensus       526 l~f~p~  531 (531)
                      |||.|.
T Consensus       507 ~Q~~p~  512 (712)
T KOG0283|consen  507 LQFFPG  512 (712)
T ss_pred             eEecCC
Confidence            999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-36  Score=282.59  Aligned_cols=274  Identities=21%  Similarity=0.369  Sum_probs=229.7

Q ss_pred             cccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC
Q 009614          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       226 ~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      +....+.+|.+.|-|+.|+|+|..||+|+.|.++++||+.+..       +..+.++|...|.||+|+|||+.||+|+.|
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhccccC
Confidence            3445788999999999999999999999999999999998543       334689999999999999999999999999


Q ss_pred             CcEEEEEcccCccc-cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          306 GTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       306 g~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      |+|++||..+++++ ..+..+...+.++.|.+.+...           ......+.+.|+.+.+|+...    .+.+..+
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-----------~~r~las~skDg~vrIWd~~~----~~~~~~l  243 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-----------PCRRLASSSKDGSVRIWDTKL----GTCVRTL  243 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCC-----------CccceecccCCCCEEEEEccC----ceEEEEe
Confidence            99999999998765 4577888888888887766332           122456778899999999876    3457888


Q ss_pred             ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEE-----------------------------------------
Q 009614          385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR-----------------------------------------  423 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~-----------------------------------------  423 (531)
                      .+|+.+|+|+.|-.+|+|++|+.|++|++|+...|.+++                                         
T Consensus       244 sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            999999999999988899999999999999874331110                                         


Q ss_pred             ---------------------------------------EeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          424 ---------------------------------------VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       424 ---------------------------------------~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                                                             ...|..-|+.+.|+| |+.|+|+++.|..|++||.++++.+
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFL  402 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchh
Confidence                                                   012677799999999 9999999999999999999999988


Q ss_pred             -EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       465 -~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                       .+.+|-..|+.++|+.|.++|++|+.|.++++|++++.++.+..+    |    +...+.++.++|
T Consensus       403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp----G----h~DEVf~vDwsp  461 (480)
T KOG0271|consen  403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP----G----HADEVFAVDWSP  461 (480)
T ss_pred             hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC----C----CCceEEEEEecC
Confidence             588899999999999999999999999999999999998877544    2    234566666655

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-34  Score=270.57  Aligned_cols=262  Identities=23%  Similarity=0.364  Sum_probs=222.8

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-----CCCEEEE
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-----DGQYLAS  301 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-----dg~~Las  301 (531)
                      ++.++.+|..-|.|++|+|||+.||+|+.||.|++||.+++...      +..+.+|+..|++++|.|     ..++||+
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las  222 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLAS  222 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceec
Confidence            34467778888999999999999999999999999998876653      345889999999999976     6679999


Q ss_pred             EeCCCcEEEEEcccCccccceecCCCCCeeEEEeec-------CCcceeeeecccccc----------------------
Q 009614          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN-------HLSQLIPIDVDKEKI----------------------  352 (531)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----------------------  352 (531)
                      ++.||.|+|||+..+.++..+..+...+.|+.|-..       ....+..+....+..                      
T Consensus       223 ~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L  302 (480)
T KOG0271|consen  223 SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL  302 (480)
T ss_pred             ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence            999999999999999999999999999999876421       111111111111000                      


Q ss_pred             --------------------------------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614          353 --------------------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (531)
Q Consensus       353 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~  400 (531)
                                                      ..-..++++.+..+++|.+...   .+|+....+|..-|+.+.|+|++
T Consensus       303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~---kkpi~rmtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS---KKPITRMTGHQALVNHVSFSPDG  379 (480)
T ss_pred             hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc---ccchhhhhchhhheeeEEECCCc
Confidence                                            0012467888999999988653   35778889999999999999999


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEE
Q 009614          401 -FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC  477 (531)
Q Consensus       401 -~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~  477 (531)
                       ++++++.|+.|++||.++|+.+.+|+ |-..|+.|+|+. |.++|++|+.|.++++|++++.++. .+.+|.+.|.++.
T Consensus       380 r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD  458 (480)
T KOG0271|consen  380 RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD  458 (480)
T ss_pred             cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence             99999999999999999999999998 999999999999 9999999999999999999999887 5899999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEe
Q 009614          478 YCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       478 ~spdg~~l~sgs~dg~I~iwd  498 (531)
                      |+|||..+++|+.|..+++|.
T Consensus       459 wspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  459 WSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceeecCCCceEEEeec
Confidence            999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-34  Score=274.76  Aligned_cols=258  Identities=20%  Similarity=0.312  Sum_probs=225.2

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcc
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~~  314 (531)
                      ++..+.|++|+..||+|+.+|.++||+...       ....++|.||++.|.++.|+|.  +..||||+.||+|++|++.
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            445578999999999999999999999884       3455789999999999999996  6689999999999999999


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      +...+..+..+...+..+.|.++...                +.+++.|..-.+|+....    ..+....||...|.++
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPsG~~----------------L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPSGKF----------------LGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSI  309 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCCCce----------------eeecccccchhhcccccc----hhhHhhccccccccee
Confidence            99999999999888888888776642                345666777788887663    3456678999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCC
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE  471 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~  471 (531)
                      +|+|+| ++++|+.|..-+|||++++.++..+. |..+|.+|.|+| +|..||+|+.|++++|||++..+.+ .+.+|.+
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n  388 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN  388 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccc
Confidence            999999 99999999999999999999999986 999999999999 9999999999999999999988766 5889999


Q ss_pred             ceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       472 ~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .|+.|+|+| .|.+|++++.|++++||...+..+++...    |    |..+|.++..+|
T Consensus       389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa----G----He~kV~s~Dis~  440 (459)
T KOG0272|consen  389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA----G----HEGKVISLDISP  440 (459)
T ss_pred             hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc----C----CccceEEEEecc
Confidence            999999999 78999999999999999999999887543    2    346777776654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.5e-34  Score=272.79  Aligned_cols=245  Identities=20%  Similarity=0.334  Sum_probs=220.5

Q ss_pred             ccccceeeeccccceeeeCC--CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          227 KLGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspd--g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      .+.++.+|...++++.|+|.  +..+|+|+.||++++|++...       ...+.+.+|...|..++|+|+|++|+|++.
T Consensus       209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l~~l~gH~~RVs~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPLQDLEGHLARVSRVAFHPSGKFLGTASF  281 (459)
T ss_pred             eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cchhhhhcchhhheeeeecCCCceeeeccc
Confidence            34467889999999999998  568999999999999999843       344578999999999999999999999999


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      |.+-++||+.++..+.....+...+.++.|.++..                ...+++-|..-.+|+.+..    ..+..+
T Consensus       282 D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS----------------L~~tGGlD~~~RvWDlRtg----r~im~L  341 (459)
T KOG0272|consen  282 DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS----------------LAATGGLDSLGRVWDLRTG----RCIMFL  341 (459)
T ss_pred             ccchhhcccccchhhHhhcccccccceeEecCCCc----------------eeeccCccchhheeecccC----cEEEEe
Confidence            99999999999998888888888888888876652                2356677888889998874    567889


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      .+|...|.+++|+|+| .|+||+.|++++|||++...++.++. |.+-|+.|+|.|..+.+|++++.|++++||...+.+
T Consensus       342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~  421 (459)
T KOG0272|consen  342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS  421 (459)
T ss_pred             cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence            9999999999999999 99999999999999999999988885 999999999999888999999999999999999999


Q ss_pred             EEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          463 VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       463 ~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      +++ +.+|.+.|.++.++||++++++++.|.+|++|.
T Consensus       422 ~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  422 PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            985 899999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.9e-33  Score=287.76  Aligned_cols=246  Identities=27%  Similarity=0.419  Sum_probs=217.4

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCc-------cccc-----------------ccccceEEcccCCCEEEEE
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILTMK  291 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~-------~~~~-----------------~~~~~~~l~~H~~~I~~l~  291 (531)
                      ..+.|..|++|+.++|.|..|..|++|.+...+       ..+.                 ......++.||.++|..+.
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s  458 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS  458 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence            455678999999999999999999999998422       0111                 1112245889999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC
Q 009614          292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP  371 (531)
Q Consensus       292 fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (531)
                      |+|+.++|+++++|++||+|.+.+..++..+..+..++..+.|.|..                .+..+++.|.+..+|..
T Consensus       459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G----------------yYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG----------------YYFATASHDQTARLWST  522 (707)
T ss_pred             ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc----------------eEEEecCCCceeeeeec
Confidence            99999999999999999999999999999999998888888887543                23456678888888887


Q ss_pred             ccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC
Q 009614          372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       372 ~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      ..    .+|++.+.+|.+.|.|+.|+|+. ++++||.|.+||+||+.+|..++.|. |.++|++|+|+| +|.+|++|+.
T Consensus       523 d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~e  597 (707)
T KOG0263|consen  523 DH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDE  597 (707)
T ss_pred             cc----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeeccc
Confidence            66    56889999999999999999999 99999999999999999999999996 999999999999 9999999999


Q ss_pred             CCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      ||.|.|||+.+++++ .+.+|.+.|+++.|+.||..||+|+.|.+|++||+..-
T Consensus       598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999998877 58999999999999999999999999999999998643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.3e-32  Score=262.39  Aligned_cols=245  Identities=23%  Similarity=0.412  Sum_probs=208.9

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ..+.+++|+.+|.+||+|+.+|.++||+.....        ..++..|+++|.+|+|+.+|+||++++.||++.+||..+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            456679999999999999999999999986432        235778999999999999999999999999999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      +...+.+..+..+..-+.|..+.                 ...+.+.++.+.++....    ..|+.++.+|.+.|.+|.
T Consensus       308 g~~~q~f~~~s~~~lDVdW~~~~-----------------~F~ts~td~~i~V~kv~~----~~P~~t~~GH~g~V~alk  366 (524)
T KOG0273|consen  308 GTVKQQFEFHSAPALDVDWQSND-----------------EFATSSTDGCIHVCKVGE----DRPVKTFIGHHGEVNALK  366 (524)
T ss_pred             ceEEEeeeeccCCccceEEecCc-----------------eEeecCCCceEEEEEecC----CCcceeeecccCceEEEE
Confidence            99888887776654434443222                 123445565666654443    468999999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC--------CCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------DDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~--------d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      |+|.+ +|++++.|++++||......+...+. |...|..+.|+|+        .+..+++++.|++|++||+..+.++.
T Consensus       367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~  446 (524)
T KOG0273|consen  367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH  446 (524)
T ss_pred             ECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence            99999 99999999999999998888887775 9999999999984        34579999999999999999998885


Q ss_pred             -ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          466 -YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       466 -~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                       +..|..+|++++|+|+|+++++|+.||.|+||+++++++++.++
T Consensus       447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence             77999999999999999999999999999999999999998765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.2e-31  Score=241.73  Aligned_cols=266  Identities=19%  Similarity=0.327  Sum_probs=226.0

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      -+++.+|..++.++.|++|.+++++++.||.+.|||.-+..++       +.+.-....|..++|+|.|+++|.|+-|+.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~  120 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNK  120 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCce
Confidence            3578899999999999999999999999999999998865543       235556788999999999999999999999


Q ss_pred             EEEEEcccC------ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          308 VRVWKVIEH------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       308 I~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      ..||++.+.      ...+.+..+.....|..|..+                 ..++++++|.++.+|+...    .+.+
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-----------------~~ilT~SGD~TCalWDie~----g~~~  179 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-----------------NHILTGSGDMTCALWDIET----GQQT  179 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCC-----------------CceEecCCCceEEEEEccc----ceEE
Confidence            999999855      223445566666666655442                 2347889999999999987    4557


Q ss_pred             eEeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          382 HEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ..|.+|.+.|.+|+++| ++ .+++|+-|++.+|||++.+.++++|. |...|++|+|.| ++.-|++|+.|++.|+||+
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEee
Confidence            88999999999999999 56 99999999999999999999999996 999999999999 9999999999999999999


Q ss_pred             CCCeEEEecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          459 RRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       459 ~~~~~~~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +..+.+....+   ..+|++++|+..|++|.+|..|.++.+||.-.++......        .|.++|+.|..+|
T Consensus       259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~  325 (343)
T KOG0286|consen  259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSP  325 (343)
T ss_pred             cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--------ccCCeeEEEEECC
Confidence            99876654333   4579999999999999999999999999987777665332        3568999998876

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-31  Score=241.33  Aligned_cols=277  Identities=19%  Similarity=0.280  Sum_probs=233.6

Q ss_pred             cccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      .+++.+|.+-|.+++..+.+ ..+++++.|..+.+|++......  .....+.+.||...|..+..++||++.++++.|+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~--~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK--YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc--cCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            34677788888888888874 56778999999999999866433  3344567999999999999999999999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      ++++||+.+++..+.+..|...+.++.+.++..                ..++++.|.++.+|+...     ....+...
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~----------------qivSGSrDkTiklwnt~g-----~ck~t~~~  144 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR----------------QIVSGSRDKTIKLWNTLG-----VCKYTIHE  144 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCc----------------eeecCCCcceeeeeeecc-----cEEEEEec
Confidence            999999999999999999999998888877653                346788888898887654     22333333


Q ss_pred             --CCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          387 --HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       387 --h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                        |.+.|.|+.|+|+  . +|++++.|++|++||+++-+....+. |.++++.++++| ||.+.++|+.||.+.+||++.
T Consensus       145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC
Confidence              3789999999998  4 99999999999999999988888774 999999999999 999999999999999999999


Q ss_pred             CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc-ccCCCceeeeEEEe
Q 009614          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGFQVV  529 (531)
Q Consensus       461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~-kk~~~~~It~l~f~  529 (531)
                      ++.+...++...|.+++|+|+.-.|+.+. +..|+|||+.++.++.+++....+. .+.....-++++|+
T Consensus       224 ~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws  292 (315)
T KOG0279|consen  224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS  292 (315)
T ss_pred             CceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence            99999999999999999999976666655 4559999999999999988877665 44445566777776

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.98  E-value=1.6e-30  Score=236.69  Aligned_cols=247  Identities=19%  Similarity=0.312  Sum_probs=207.0

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      ..+.+.+|...+..+..++||++.++++.|+.+++||+..+       ...+.|.||...|.+++|++|.+.++||+.|.
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------cEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence            34457788888999999999999999999999999999854       34456899999999999999999999999999


Q ss_pred             cEEEEEcccCccccceecC-CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          307 TVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +|++|++............ ..-+.|+.|.|+....+              ++.++.|..+.+|+....++    ...+.
T Consensus       128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~--------------Ivs~s~DktvKvWnl~~~~l----~~~~~  189 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI--------------IVSASWDKTVKVWNLRNCQL----RTTFI  189 (315)
T ss_pred             eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE--------------EEEccCCceEEEEccCCcch----hhccc
Confidence            9999998665443333332 56688999988874433              36778899999999988665    56788


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      +|++.++.++++|+| ++++|+.||.+.+||++.++.+..+.|...|.+++|+| +...|+ ...+..|+|||+.++.++
T Consensus       190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-nrywL~-~at~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-NRYWLC-AATATSIKIWDLESKAVV  267 (315)
T ss_pred             cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-CceeEe-eccCCceEEEeccchhhh
Confidence            999999999999999 99999999999999999999999999999999999999 554444 455667999999998876


Q ss_pred             E-----ecCC-----CCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          465 D-----YTDI-----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       465 ~-----~~~~-----~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .     ..+.     .....+++|++||..|++|-.|+.|++|.+.
T Consensus       268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            2     2222     2345788999999999999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.2e-30  Score=260.10  Aligned_cols=254  Identities=23%  Similarity=0.396  Sum_probs=211.8

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      ..+|...+.+++++|||+++|+|+.||.|+|||..       ..++..++..|+..|+.+.|+..|+.|++++-||+|+.
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEecc-------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence            56678899999999999999999999999999987       45566789999999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+...+..+++..+.. ....+...+..+.+++..             .-..-.+.+|+.++.    +.+-.+.||.++
T Consensus       419 wDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG-------------~~d~F~IfvWS~qTG----qllDiLsGHEgP  480 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAG-------------AQDSFEIFVWSVQTG----QLLDILSGHEGP  480 (893)
T ss_pred             eeecccceeeeecCCCc-eeeeEEEEcCCCCEEEee-------------ccceEEEEEEEeecC----eeeehhcCCCCc
Confidence            99999988888766543 333344444444444322             122335788888774    457788999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---  465 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---  465 (531)
                      |.+++|+|.+ .|++++.|++||+||+-. ...+.++.+...++.++|.| +++-++++..||.|.+||+..+..+.   
T Consensus       481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeecccc
Confidence            9999999999 999999999999999854 45677888899999999999 99999999999999999987654331   


Q ss_pred             ------------------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          466 ------------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       466 ------------------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                                        -......++.++|++||..|++|+..+.|+||++.++-+++++++
T Consensus       560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             chhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence                              111235689999999999999999999999999999999998886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=2.9e-29  Score=229.75  Aligned_cols=231  Identities=22%  Similarity=0.386  Sum_probs=200.7

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      ++++||.+.|+++.|++|.++|++++.||.+.|||.-+......++.+..-+...+++|....                .
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~----------------V  112 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNF----------------V  112 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCe----------------E
Confidence            579999999999999999999999999999999999998888888777766666666655421                2


Q ss_pred             cccCCCceEEEeCCccccc--cCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEE
Q 009614          358 LRKSSDLTCVVLPPKVFRL--LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV  434 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv  434 (531)
                      ..++-+..+.+|+....+.  ..+....+.+|.+.+.|..|-++++|++++.|.+..+||+++++.+..|. |.+.|.++
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl  192 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL  192 (343)
T ss_pred             EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence            3566677788888775422  23446678999999999999998899999999999999999999999996 99999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ  513 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~  513 (531)
                      .++|.+++.|++|+-|+..+|||++.+.+++ +.+|...|++|+|.|+|.-+++|+.|+++++||++..+.+..++    
T Consensus       193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys----  268 (343)
T KOG0286|consen  193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS----  268 (343)
T ss_pred             ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec----
Confidence            9999899999999999999999999998874 89999999999999999999999999999999999998888777    


Q ss_pred             ccccCCCceeeeEEEee
Q 009614          514 GKKKLPGKRITGFQVVK  530 (531)
Q Consensus       514 ~~kk~~~~~It~l~f~p  530 (531)
                        +......|++++|+.
T Consensus       269 --~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  269 --HDSIICGITSVAFSK  283 (343)
T ss_pred             --cCcccCCceeEEEcc
Confidence              223346899999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=223.55  Aligned_cols=254  Identities=17%  Similarity=0.305  Sum_probs=207.8

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +......|+.+.+.|+++.||+++. ..|++||++.....     +..++.+|+..|++|.|..+|+.++|||+||+++|
T Consensus        36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI  109 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI  109 (311)
T ss_pred             EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----ceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence            4444456778999999999999865 78999999965532     34578999999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||++...+.+.+... .++.++...++..                .++.+..++.+.+|+.........++..   ....
T Consensus       110 WdlR~~~~qR~~~~~-spVn~vvlhpnQt----------------eLis~dqsg~irvWDl~~~~c~~~liPe---~~~~  169 (311)
T KOG0315|consen  110 WDLRSLSCQRNYQHN-SPVNTVVLHPNQT----------------ELISGDQSGNIRVWDLGENSCTHELIPE---DDTS  169 (311)
T ss_pred             EeccCcccchhccCC-CCcceEEecCCcc----------------eEEeecCCCcEEEEEccCCccccccCCC---CCcc
Confidence            999997766666554 5566666655543                3356788889999998765433333222   3367


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE------EEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-  461 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~------l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-  461 (531)
                      |.++.+.|+| +|+.+...|...+|++-+.+.      +..|. |+..+..+.++| +.++|++++.|.+++||+..+. 
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCce
Confidence            9999999999 999999999999999976543      33333 999999999999 9999999999999999999987 


Q ss_pred             eE-EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          462 QV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       462 ~~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +. ..+.+|...+...+|+.||.||++|+.|+.+++|++..++.+.+++.+
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            22 257889999999999999999999999999999999999998877644

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=2.2e-29  Score=235.94  Aligned_cols=280  Identities=20%  Similarity=0.339  Sum_probs=237.2

Q ss_pred             hcccccccc---ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC
Q 009614          220 VKRGWLKKL---GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG  296 (531)
Q Consensus       220 ~~~~w~~~~---~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg  296 (531)
                      .++.|..+.   +.+.+|.+-|.|+++.|.+.++++|+.|++|+|||+..+...+       ++.||...|..+++|+-.
T Consensus       133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------tltGhi~~vr~vavS~rH  205 (460)
T KOG0285|consen  133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------TLTGHIETVRGVAVSKRH  205 (460)
T ss_pred             CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------eecchhheeeeeeecccC
Confidence            566776554   4578888999999999999999999999999999999665443       588999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       297 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      .||++++.|+.|+.||+...+.++.+..+-..+.|+...+.-                ..+++++.|..+.+|+.+.   
T Consensus       206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----------------dvl~t~grDst~RvWDiRt---  266 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----------------DVLVTGGRDSTIRVWDIRT---  266 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc----------------eeEEecCCcceEEEeeecc---
Confidence            999999999999999999999999998888877777665432                2346788899999999987   


Q ss_pred             cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                       ...++.+.||..+|..+.+.|.. .+++|+.|++|++||++.++...++. |+..|.+++.+| ....||+++.| .|+
T Consensus       267 -r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik  343 (460)
T KOG0285|consen  267 -RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIK  343 (460)
T ss_pred             -cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cce
Confidence             34689999999999999999877 99999999999999999998887775 889999999999 89999999987 699


Q ss_pred             EEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       455 Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      -|++..+..+ .+.+|+..|++++...|| ++++|+.+|.+.+||.++|...|..+...+.-.-....-|+.-+|-
T Consensus       344 ~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD  418 (460)
T KOG0285|consen  344 QWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD  418 (460)
T ss_pred             eccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence            9999999877 588999999999999887 6889999999999999999988877644433232333445555543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-29  Score=235.56  Aligned_cols=252  Identities=21%  Similarity=0.333  Sum_probs=222.1

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      ++++...+..+-|+|+-..+++++.|++|++||+.++..+       ..++||+.+|.+|+|+..|++||+++.|-.+++
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-------RSLRGHTDSVFDISFDASGKYLATCSSDLSAKL  176 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-------hhhhccccceeEEEEecCccEEEecCCccchhh
Confidence            5567777778899999999999999999999999976653       358999999999999999999999999999999


Q ss_pred             EEccc-CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          311 WKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       311 Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      ||..+ .++++.+..+...+.++.+.+..                ...++.+.|..+..|+...    +-.+.++.+|..
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~g----------------d~ilS~srD~tik~We~~t----g~cv~t~~~h~e  236 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLG----------------DHILSCSRDNTIKAWECDT----GYCVKTFPGHSE  236 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecC----------------CeeeecccccceeEEeccc----ceeEEeccCchH
Confidence            99987 56777778888888888887764                2335667778888888776    345889999999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC--------------CCCEEEEEeCCCeE
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV--------------DDNYFISGSIDGKV  453 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~--------------d~~~l~sgs~Dg~I  453 (531)
                      .|..+..+.+| ++++++.|.+|++|-+.+++|...+. |..+|-|++|-|.              .+.++.+++.|++|
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            99999999999 99999999999999999999998886 9999999999773              23599999999999


Q ss_pred             EEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       454 ~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ++||+.++.++ .+.+|.+.|..++|+|.|+||+++..|+++++||++++++...+.
T Consensus       317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            99999999987 799999999999999999999999999999999999998876554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=4e-30  Score=244.75  Aligned_cols=260  Identities=20%  Similarity=0.325  Sum_probs=215.1

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ..|..+.|.|+|+.|++|+..|.+.+|+.....-       ...+++|..+|++|.|+++|.+++||+.+|.|++|+..-
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeH-------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence            3455689999999999999999999999853222       224789999999999999999999999999999999754


Q ss_pred             Cccccceec-CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          316 HERLDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      .. ++.+.. +...+.++.|+++..                +.++.+.|+.+.+|+....    ++-..+.+|.-.|.++
T Consensus       170 nn-Vk~~~ahh~eaIRdlafSpnDs----------------kF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  170 NN-VKIIQAHHAEAIRDLAFSPNDS----------------KFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSV  228 (464)
T ss_pred             hh-hHHhhHhhhhhhheeccCCCCc----------------eeEEecCCCeEEEEeccCC----chhheeccCCCCccee
Confidence            43 333433 336778888877442                3356788899999987653    4456679999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-EEEecCCCC
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIRE  471 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-~~~~~~~~~  471 (531)
                      .|+|.. ++++++.|..|++||.+++.|+.++. |+..|..+.|+| ++++|+++|.|..++++|+++.+ +..+.+|..
T Consensus       229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk  307 (464)
T KOG0284|consen  229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK  307 (464)
T ss_pred             ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchh
Confidence            999987 99999999999999999999999886 999999999999 88999999999999999999654 446889999


Q ss_pred             ceEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614          472 IVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       472 ~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~  531 (531)
                      .|+++.|+|- ..+|++|+.||.|..|.+...+.+..+       ...|-..|.++++.|+
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-------~~AHd~~iwsl~~hPl  361 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-------PPAHDGEIWSLAYHPL  361 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEeccccccccCC-------Ccccccceeeeecccc
Confidence            9999999994 567889999999999999844443322       2345678999999885

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=3.7e-29  Score=238.17  Aligned_cols=241  Identities=19%  Similarity=0.288  Sum_probs=211.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      +..|...|.++.|+++|.++++|+.+|.|++|+..-.        ..+.+++|. .+|++++|+|+...+++|++||+|+
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik  205 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK  205 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence            3457788889999999999999999999999987632        223455555 8999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      |||....+.-..+..+.-.+.++.|.+...                ..++++.|..+.+|+++.    +..+.++.+|..
T Consensus       206 iWdf~~~kee~vL~GHgwdVksvdWHP~kg----------------LiasgskDnlVKlWDprS----g~cl~tlh~HKn  265 (464)
T KOG0284|consen  206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKG----------------LIASGSKDNLVKLWDPRS----GSCLATLHGHKN  265 (464)
T ss_pred             EEeccCCchhheeccCCCCcceeccCCccc----------------eeEEccCCceeEeecCCC----cchhhhhhhccc
Confidence            999998888888888888888888876542                235667778999999988    456889999999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--  465 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--  465 (531)
                      .|+.+.|+|++ +|++++.|..++++|+++.+.+.++. |...|+++.|+|....+|.+|+.||.|..|.+...+.+.  
T Consensus       266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i  345 (464)
T KOG0284|consen  266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI  345 (464)
T ss_pred             eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence            99999999999 99999999999999999888888887 999999999999999999999999999999999655553  


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      -.+|...|++++|+|-|.+|++|+.|.++++|.-
T Consensus       346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             CcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            4678899999999999999999999999999964

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=2.5e-29  Score=234.59  Aligned_cols=253  Identities=21%  Similarity=0.366  Sum_probs=206.8

Q ss_pred             eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccc
Q 009614          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG  321 (531)
Q Consensus       242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~  321 (531)
                      ++--|+..+++|..|.+|+|||.+       ...+...+.||++.|.|+.|.  .+.|++|+.|.+|+|||+++++.+..
T Consensus       202 ClQYDD~kiVSGlrDnTikiWD~n-------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  202 CLQYDDEKIVSGLRDNTIKIWDKN-------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             EEEecchhhhcccccCceEEeccc-------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence            344578889999999999999988       444556789999999999995  66999999999999999999999988


Q ss_pred             eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCe
Q 009614          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF  401 (531)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~  401 (531)
                      +-.+...+..+.+..                  ...++.+.|..+.+|+..... .....+.+.||...|+.+.|+.. +
T Consensus       273 lihHceaVLhlrf~n------------------g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~k-y  332 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFSN------------------GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDDK-Y  332 (499)
T ss_pred             HhhhcceeEEEEEeC------------------CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccccc-e
Confidence            877766555544432                  233567788888899876544 33456778999999999999755 9


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEc
Q 009614          402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC  479 (531)
Q Consensus       402 l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~s  479 (531)
                      +++++.|.+|++|++.+..+++++. |.-.|.|+++   .++++++|+.|.+|++||+..|.++. +.+|.+-|.++.| 
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-  408 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-  408 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-
Confidence            9999999999999999999999996 9999999998   67999999999999999999999985 8899999999999 


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEEEE--eeeeecccccCCCceeeeEEEe
Q 009614          480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQ--NQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       480 pdg~~l~sgs~dg~I~iwd~~~~~l~~~--~~~~~~~~kk~~~~~It~l~f~  529 (531)
                       |.+.+++|+.||+|++||+..+.--.-  ..+++.. .-.+.+++.++||-
T Consensus       409 -d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~-lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  409 -DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT-LVEHSGRVFRLQFD  458 (499)
T ss_pred             -cCceeeeccccceEEEEecccccCCcccccchHHHh-hhhccceeEEEeec
Confidence             567899999999999999987643211  1223222 22345789999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.1e-26  Score=223.79  Aligned_cols=265  Identities=25%  Similarity=0.414  Sum_probs=216.2

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+..|...+.+++|+|+++++++++.+|.|++|++....       ....+.+|...+..+.|+|++++|++++.||.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence            455778889999999999999999999999999998543       2335678999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +|++.+++....+..+...+.++.+.+.  ..+              .+.+..++.+.+|+...    .++...+..|..
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--------------~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~  136 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPD--GRI--------------LSSSSRDKTIKVWDVET----GKCLTTLRGHTD  136 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCC--CCE--------------EEEecCCCeEEEEECCC----cEEEEEeccCCC
Confidence            9999987776666655555555555543  111              12233467788887763    344666778999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      .|.++.|+|++ ++++++.|+.|++||+++++.+..+. |...+.+++|+| +++.+++++.|+.|++||+.+++.+...
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch
Confidence            99999999988 77777779999999999888888776 777999999999 8889999999999999999988877544


Q ss_pred             -CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          468 -DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       468 -~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                       .+...+.+++|+|++.++++++.+|.|++|++.+++....++        .+...|++++|+|
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~  271 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSP  271 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--------ccCCcEEEEEECC
Confidence             788899999999999988888889999999999887776554        2235788888876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=7.3e-28  Score=221.40  Aligned_cols=210  Identities=21%  Similarity=0.385  Sum_probs=185.9

Q ss_pred             ccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       225 ~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      ..+...+.+|...+..+.|+|+|.++|+|+.|..|.+|++......+.      .+++|.++|..+.|.+|++.|++++.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecC
Confidence            344556778888899999999999999999999999999765444332      47799999999999999999999999


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      |++|+.||+++|++.                                                              ..+
T Consensus       111 Dk~v~~wD~~tG~~~--------------------------------------------------------------rk~  128 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRI--------------------------------------------------------------RKH  128 (338)
T ss_pred             CceEEEEecccceee--------------------------------------------------------------ehh
Confidence            999999999998754                                                              345


Q ss_pred             ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ++|..-|+.+.-+.-|  ++.+++.|++++|||+++..+++++..+.+++++.|.. .+..+++|+.|+.|++||++.+.
T Consensus       129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d  207 (338)
T KOG0265|consen  129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKND  207 (338)
T ss_pred             ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCc
Confidence            6688888888855556  88899999999999999999999999999999999998 88999999999999999999988


Q ss_pred             EE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       463 ~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      .. .+.+|.+.|+.+..+|+|.++.+-+.|.++++||++.-.
T Consensus       208 ~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  208 GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence            76 589999999999999999999999999999999997543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=1.5e-26  Score=226.78  Aligned_cols=269  Identities=19%  Similarity=0.260  Sum_probs=206.6

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      +...|..-|+++.|+|||.++|+.+.||+|.+||-.++.+.-.    ...-.+|++.|.+|+|+||++.|+|++.|.+++
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~----l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE----LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK  260 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE----ecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence            4566777888999999999999999999999999887664311    001238999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCC-eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          310 VWKVIEHERLDGFDVQDTDP-SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      |||+.+.++++++....... ..+-..+. ...               +++.+.++.+-.+++...    .+++.+.||.
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~---------------lItVSl~G~in~ln~~d~----~~~~~i~GHn  320 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDH---------------LITVSLSGTINYLNPSDP----SVLKVISGHN  320 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEe-CCe---------------EEEEEcCcEEEEecccCC----Chhheecccc
Confidence            99999999888876544310 11111111 111               233444555555555442    3678899999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-------------------------------e-----------
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-------------------------------F-----------  425 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-------------------------------~-----------  425 (531)
                      ..|++++.+|++ +|++|+.||.|.-|+..++..-+.                               +           
T Consensus       321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~  400 (603)
T KOG0318|consen  321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE  400 (603)
T ss_pred             cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence            999999999999 999999999999999864421100                               0           


Q ss_pred             -------------------------------e---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614          426 -------------------------------S---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (531)
Q Consensus       426 -------------------------------~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-  464 (531)
                                                     .         ......+++++| ++..++.|+.|++|+||.+...... 
T Consensus       401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~e  479 (603)
T KOG0318|consen  401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKE  479 (603)
T ss_pred             eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccc
Confidence                                           0         011345788888 9999999999999999999986533 


Q ss_pred             --EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          465 --DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       465 --~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                        ....|..+|+.++|+||+.+||+|...+.+.+||+.+.+.. ...      .--|..+|.+++++|
T Consensus       480 e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~~------w~FHtakI~~~aWsP  540 (603)
T KOG0318|consen  480 EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TNR------WAFHTAKINCVAWSP  540 (603)
T ss_pred             eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-cce------eeeeeeeEEEEEeCC
Confidence              57889999999999999999999999999999999988772 211      233568999999988

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-27  Score=209.75  Aligned_cols=269  Identities=16%  Similarity=0.218  Sum_probs=226.5

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      +...+.|+.+.+..+.|+-+|++.++++.|.+|++|+...+       ...+++.+|...|..++.+.|...|++|+.|+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCc
Confidence            34567888999999999999999999999999999998733       34567999999999999999999999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|.+||+.+|+..+.+..+...+..+.|....                ...++++-|..+.+|+.+...  .+|++.+..
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees----------------SVv~SgsfD~s~r~wDCRS~s--~ePiQilde  143 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES----------------SVVASGSFDSSVRLWDCRSRS--FEPIQILDE  143 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcc----------------eEEEeccccceeEEEEcccCC--CCccchhhh
Confidence            99999999999999999998888877765432                233567888899999988755  468888988


Q ss_pred             CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (531)
Q Consensus       387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-  465 (531)
                      ....|.++..... .+++|+.||++|.||++.|+...-+ ...+|+|++|++ +++..++++.|+++++.|-.+++++. 
T Consensus       144 a~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s  220 (307)
T KOG0316|consen  144 AKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS  220 (307)
T ss_pred             hcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH
Confidence            8999999988644 8999999999999999998765433 467899999999 99999999999999999999999884 


Q ss_pred             ecCCCCceEE--EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          466 YTDIREIVSA--VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       466 ~~~~~~~v~~--v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +.+|...-+.  .++......+++|+.||.|++||+.+..++.++...       ....|+.+.+.|
T Consensus       221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-------~~v~v~dl~~hp  280 (307)
T KOG0316|consen  221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-------STVIVTDLSCHP  280 (307)
T ss_pred             hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-------CceeEEeeeccc
Confidence            7888776544  466667788999999999999999999888765532       112367777776

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.4e-26  Score=235.30  Aligned_cols=267  Identities=25%  Similarity=0.386  Sum_probs=215.9

Q ss_pred             ccccceeeeCCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      .++..++|+..|.++|.|+. -|.+.||++....-.+       ..++|...|++++++|||+++|||++||.|+|||..
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence            34456789999999999765 4899999998544333       257999999999999999999999999999999999


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC-CCCeeE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLD  393 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~  393 (531)
                      .+-|..++..|...+..+.|......                .++.+-|+++..|+...++.    .+++... .-...|
T Consensus       381 SgfC~vTFteHts~Vt~v~f~~~g~~----------------llssSLDGtVRAwDlkRYrN----fRTft~P~p~Qfsc  440 (893)
T KOG0291|consen  381 SGFCFVTFTEHTSGVTAVQFTARGNV----------------LLSSSLDGTVRAWDLKRYRN----FRTFTSPEPIQFSC  440 (893)
T ss_pred             CceEEEEeccCCCceEEEEEEecCCE----------------EEEeecCCeEEeeeecccce----eeeecCCCceeeeE
Confidence            99999999999998888888765532                35667889999999876543    4455443 235679


Q ss_pred             EEEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCC
Q 009614          394 LSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI  469 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg-~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~~~~~  469 (531)
                      ++..|.| .+.+|+.|. .|.+|++++|+.+-.+. |.++|.+++|+| ++..|+++|.|.+||+||+-.. ..+....+
T Consensus       441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i  519 (893)
T KOG0291|consen  441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEI  519 (893)
T ss_pred             EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence            9999999 666777665 49999999999999996 999999999999 9999999999999999999765 34456667


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee---ecc---------cccCCCceeeeEEEee
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC---LQG---------KKKLPGKRITGFQVVK  530 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~---~~~---------~kk~~~~~It~l~f~p  530 (531)
                      ...+++++|+|||+.|++++.||.|.+||++.+.....+...   ..|         ++...+|.+|.|.|++
T Consensus       520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa  592 (893)
T KOG0291|consen  520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA  592 (893)
T ss_pred             ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence            788999999999999999999999999999987766433210   111         1234568889998874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.2e-26  Score=224.81  Aligned_cols=209  Identities=25%  Similarity=0.426  Sum_probs=182.4

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----------------------------------cc
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SL  274 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----------------------------------~~  274 (531)
                      .++.+|+.++.++.|+..|.+|++++.|+++.+||..++.....                                  .-
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence            35788899999999999999999999999999999965432110                                  11


Q ss_pred             ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614          275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (531)
Q Consensus       275 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (531)
                      .+..++.+|.++|.+|.|+|.|.+|+|++.|++++||+......                                    
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~------------------------------------  393 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS------------------------------------  393 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc------------------------------------
Confidence            12346889999999999999999999999999999999865543                                    


Q ss_pred             ccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC----------eEEEEeCCCcEEEEECCCCeEEEE
Q 009614          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----------FLLSSSADKTVRLWQVGIDRCLRV  424 (531)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~----------~l~s~s~Dg~V~lwdl~~~~~l~~  424 (531)
                                                .+.+++|...|..+.|+|.|          .|++++.|++|++||+..+.++..
T Consensus       394 --------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  394 --------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             --------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence                                      34456677778788877732          799999999999999999999999


Q ss_pred             e-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          425 F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       425 ~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      | .|..+|.+++|+| ++.|+|+|+.||.|.||+++++++++.....+.|..++|+.+|.+|..+-.||.+++.|++
T Consensus       448 f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  448 LMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9 6999999999999 9999999999999999999999999888888889999999999999999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=241.29  Aligned_cols=251  Identities=24%  Similarity=0.433  Sum_probs=213.6

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc-
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV-  313 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~-  313 (531)
                      ...+.++.|+++|.++++++.++.+++|+......     ...+++.+|...|.+++|+|+++++++|+.|++|+|||+ 
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            45666789999999999999999999999954432     133456899999999999999999999999999999999 


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      ..+..++.+..|...+.++.|.+.. ..               .+.++.|..+.+|+.+.    .+++..+.+|.+.|++
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~---------------i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDG-NL---------------LVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISG  293 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCC-CE---------------EEEecCCCcEEEEeccC----CeEEEeeeccCCceEE
Confidence            5557888999999988888887766 32               35678899999999988    5678999999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEee-cCC--ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-HNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~-h~~--~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~  466 (531)
                      ++|++++ +|++++.|+.|++||+.++.  ++..+. +..  ++++++|+| ++.++++++.|+.+++||+..+.++ .+
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee
Confidence            9999999 99999999999999999999  556654 333  699999999 9999999999999999999988776 46


Q ss_pred             cCCCCc---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          467 TDIREI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       467 ~~~~~~---v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ..|...   +.+...++.+.++++|+.|+.|++||+.++..++..+.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            666654   445566789999999999999999999998877765543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.3e-27  Score=220.22  Aligned_cols=243  Identities=19%  Similarity=0.311  Sum_probs=207.3

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|.+.+..++|+..|.++|+++.|-.+++||..+.      ..+.+.+.+|...|.+++|-|.|.++++++.|.+|+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik  218 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK  218 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence            46778888889999999999999999999999998742      334456789999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      .|++.++-++..+..+..-+..+  .++..+.              ...+++.+..+.+|.....    .....+..|..
T Consensus       219 ~We~~tg~cv~t~~~h~ewvr~v--~v~~DGt--------------i~As~s~dqtl~vW~~~t~----~~k~~lR~hEh  278 (406)
T KOG0295|consen  219 AWECDTGYCVKTFPGHSEWVRMV--RVNQDGT--------------IIASCSNDQTLRVWVVATK----QCKAELREHEH  278 (406)
T ss_pred             EEecccceeEEeccCchHhEEEE--EecCCee--------------EEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence            99999999999998777633332  2222222              2345667778888876653    23466788999


Q ss_pred             CeeEEEEcC--------------CC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          390 EVLDLSWSK--------------NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       390 ~I~~l~~sp--------------~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      +|.+++|.|              ++  ++.+++.|++|++||+.++.|+.++. |...|..++|+| .|+||+++..|++
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKT  357 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCc
Confidence            999999976              22  88999999999999999999999885 999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          453 VRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       453 I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      +++||+.+++++. +..|..-++++.|+.+..++++|+-|.++++|.-
T Consensus       358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999885 7788999999999999999999999999999964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.7e-27  Score=233.56  Aligned_cols=250  Identities=21%  Similarity=0.292  Sum_probs=218.7

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +.++|.++.|||...+++++-.+|.|.||++.++.       +.+.+.-..-+|++.+|-+..+++++|++|..|+||+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            56889999999999999999999999999998544       33456667789999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++.+..+..|..-+.++...|..+                ..++.+.|..+.+|+-...   -...+++.||...|.+
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P----------------~vLtsSDDm~iKlW~we~~---wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLP----------------YVLTSSDDMTIKLWDWENE---WACEQTFEGHEHYVMQ  145 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCC----------------eEEecCCccEEEEeeccCc---eeeeeEEcCcceEEEE
Confidence            99999999999999999888776543                2356677778888865432   2457889999999999


Q ss_pred             EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC-CCCEEEEEeCCCeEEEEeCCCCeEEE-ecC
Q 009614          394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVD-YTD  468 (531)
Q Consensus       394 l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~  468 (531)
                      ++|+|..  .+++++-|++|++|.+.+..+..++. |...|+||.|-|. |..||++|+.|.+|+|||..+..++. +.+
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence            9999976  99999999999999999999988886 9999999999872 23599999999999999999999884 888


Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      |...|..++|+|.-..+++|+.||+++||+..+-++.....
T Consensus       226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence            99999999999999999999999999999998877765544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=1.3e-27  Score=232.24  Aligned_cols=268  Identities=19%  Similarity=0.300  Sum_probs=223.2

Q ss_pred             cccceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          228 LGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      +-++.+|...++++.|.| .+.+|++|+.|+.|+||++...      ..+.+++.+|..+|.+++|+++|..++|++.|+
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            345778889999999999 9999999999999999998752      334567999999999999999999999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|++||+++|+++..+... ..+.|+.+.++..+               ..+.+..++.++.|+.+...    .++++..
T Consensus       281 ~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n---------------~fl~G~sd~ki~~wDiRs~k----vvqeYd~  340 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQN---------------IFLVGGSDKKIRQWDIRSGK----VVQEYDR  340 (503)
T ss_pred             eeeeeccccceEEEEEecC-CCceeeecCCCCCc---------------EEEEecCCCcEEEEeccchH----HHHHHHh
Confidence            9999999999998887653 34667777666533               23567888899999998854    5788889


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      |.+.|..+.|-++| ++++++.|++++||+.+..-.++...  +.....||..+| .++++++-+.|+.|.||.+...-.
T Consensus       341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccc
Confidence            99999999999999 99999999999999999888777664  445667899999 999999999999999999765432


Q ss_pred             E----EecCCC--CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          464 V----DYTDIR--EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       464 ~----~~~~~~--~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .    .+.+|.  +--..+.|||||.+|++|..||.+.+||.++-+++.+++        .+.+.++++.|.|
T Consensus       420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--------ah~~~ci~v~wHP  484 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--------AHDQPCIGVDWHP  484 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--------cCCcceEEEEecC
Confidence            2    245554  345678999999999999999999999999988876543        4456788888876

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=9.5e-26  Score=235.45  Aligned_cols=216  Identities=15%  Similarity=0.232  Sum_probs=172.3

Q ss_pred             cceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCc
Q 009614          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT  307 (531)
Q Consensus       230 ~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~  307 (531)
                      .+.+|.+.|.+++|+| ++.+|++|+.|++|+||++...............+.+|...|.+++|+|++ ++|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3567888899999999 889999999999999999975432111122345688999999999999975 69999999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |+|||+.+++.                                                              +..+.+|
T Consensus       150 VrIWDl~tg~~--------------------------------------------------------------~~~l~~h  167 (493)
T PTZ00421        150 VNVWDVERGKA--------------------------------------------------------------VEVIKCH  167 (493)
T ss_pred             EEEEECCCCeE--------------------------------------------------------------EEEEcCC
Confidence            99999976542                                                              3345678


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCc-eEEEEEeeCCCCEEEEEe----CCCeEEEEeCCC
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGS----IDGKVRIWEVRR  460 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~-V~sv~fsp~d~~~l~sgs----~Dg~I~Iwd~~~  460 (531)
                      ...|.+++|+|++ +|++++.|++|++||+++++.+..+. |.+. +..+.|.| ++..+++++    .|+.|++||+++
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCC
Confidence            8999999999999 99999999999999999999887775 6544 45778998 666666654    478999999987


Q ss_pred             Ce-EEEec--CCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEe
Q 009614          461 CQ-VVDYT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       461 ~~-~~~~~--~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~~~~  508 (531)
                      .. .+...  .....+....|++++++|++|+. ||.|++||+.+++++...
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            53 33322  23345666789999999999884 999999999998876543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=1.1e-26  Score=238.15  Aligned_cols=204  Identities=23%  Similarity=0.378  Sum_probs=186.1

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|.++|....|+|+.++|++++.|++|++|.+.+..       ..-.++||..+|+++.|+|.|-|+|||+.|++.+
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            478899999999999999999999999999999998443       3345889999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +|........+.+..+...+.|+.|.|+..                +..+++.|.++.+|+...    +..++.|.||.+
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~----------------Y~aTGSsD~tVRlWDv~~----G~~VRiF~GH~~  578 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSN----------------YVATGSSDRTVRLWDVST----GNSVRIFTGHKG  578 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCccc----------------ccccCCCCceEEEEEcCC----CcEEEEecCCCC
Confidence            999999999999999999999999988763                446788999999999876    345889999999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      +|.+|+|+|+| +|++|+.|+.|++||+.++..+..+. |.+.|.+|.|+. ++..||+|+.|.+|++||+..-
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhh
Confidence            99999999999 99999999999999999999888774 999999999999 9999999999999999998753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=214.21  Aligned_cols=256  Identities=24%  Similarity=0.364  Sum_probs=211.5

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccccccc-ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYT-GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~-~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      ..+.|..|+|||+++++|+.||.|.||++.+++....-.+. ...+.-|..+|.|+.|+.|...||+|+.||.|++|.+.
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            34456889999999999999999999999876543211111 12355688999999999999999999999999999999


Q ss_pred             cCcccccee-cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          315 EHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      +|.++..+. .+...+.|+.|+.+...                .++++-|..+.+...+.    ++.++++.||...|+.
T Consensus       294 tG~ClRrFdrAHtkGvt~l~FSrD~Sq----------------iLS~sfD~tvRiHGlKS----GK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTCLSFSRDNSQ----------------ILSASFDQTVRIHGLKS----GKCLKEFRGHSSYVNE  353 (508)
T ss_pred             cchHHHHhhhhhccCeeEEEEccCcch----------------hhcccccceEEEecccc----chhHHHhcCccccccc
Confidence            999999997 77788888888766543                24455555666655554    5668899999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-  468 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~-  468 (531)
                      ..|.++| ++++++.||+|++|+..+..|+.+|.   ...+|+++..-|.+...+++|...++|+|.++...-+..+.. 
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG  433 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG  433 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence            9999999 99999999999999999999999996   557899999999888999999999999999998544433322 


Q ss_pred             --CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          469 --IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       469 --~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                        ..+...+.+.+|.|.++.+.+.|+.++.|.+.+|++.....++
T Consensus       434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence              2345677889999999999999999999999999998877654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-25  Score=204.59  Aligned_cols=208  Identities=24%  Similarity=0.399  Sum_probs=175.1

Q ss_pred             cccceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeCC
Q 009614          228 LGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      .+.+.+|.+++-.++|+|. |..||+|+.|+.|+||+..... .   ..+...+ .+|+..|+.++|+|.|++||+|+.|
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s---~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-S---WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-c---EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence            3456677788888999999 9999999999999999988421 1   1111122 3799999999999999999999999


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      .++.||.-..++.                                                            +.+.++.
T Consensus        83 ~t~~Iw~k~~~ef------------------------------------------------------------ecv~~lE  102 (312)
T KOG0645|consen   83 ATVVIWKKEDGEF------------------------------------------------------------ECVATLE  102 (312)
T ss_pred             ceEEEeecCCCce------------------------------------------------------------eEEeeee
Confidence            9999997543321                                                            2366789


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC---eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~---~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ||...|.+++|+++| +|++|+.|+.|-||.+..+   .++..+. |...|..+.|+| ...+|++++.|.+|++|.-..
T Consensus       103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence            999999999999999 9999999999999999754   4555564 999999999999 899999999999999998773


Q ss_pred             -C--eEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          461 -C--QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       461 -~--~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                       .  .++ .+.+|...|.+++|+|.|..|++++.|++++||-+.
T Consensus       182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence             2  333 688899999999999999999999999999999854

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=211.12  Aligned_cols=255  Identities=19%  Similarity=0.219  Sum_probs=205.9

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      ....+..|.+.+-+++.+|+.+++|+|+.|..-.||+..++...       -++.+|+..|+++.|+.+|.+||||+.+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------~eltgHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------GELTGHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-------eEecCCCCceEEEEEccCceEEEecCCCc
Confidence            34467778899999999999999999999999999999976632       35889999999999999999999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|+||+..++.....+...-..+.-+.|.+.  .              ...+.++.++.++.|....-    ...+.+.|
T Consensus       129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~--a--------------~illAG~~DGsvWmw~ip~~----~~~kv~~G  188 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR--A--------------HILLAGSTDGSVWMWQIPSQ----ALCKVMSG  188 (399)
T ss_pred             cEEEEEcccCceEEEeecccCceEEEEeccc--c--------------cEEEeecCCCcEEEEECCCc----ceeeEecC
Confidence            9999999999877666533333333333331  1              12356778888888876542    45778899


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---------------------------------------
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------------------------------  426 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------------------------------------  426 (531)
                      |+.++++=.|.|+| +++++..||+|++|++.+++++..+.                                       
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV  268 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence            99999999999999 99999999999999999988776543                                       


Q ss_pred             -------------cCCceEEEEEeeC--CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614          427 -------------HNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (531)
Q Consensus       427 -------------h~~~V~sv~fsp~--d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d  491 (531)
                                   +...+.||.+.|.  .-.++|+|+.||+|.|||+...++.....|...|+.+.|-+ ..+|++++.+
T Consensus       269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~  347 (399)
T KOG0296|consen  269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN  347 (399)
T ss_pred             EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC
Confidence                         0011122222221  33578899999999999999999999999999999999999 7899999999


Q ss_pred             CcEEEEeCCCCeEEEEee
Q 009614          492 GNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       492 g~I~iwd~~~~~l~~~~~  509 (531)
                      |+|++||.++|+++..+.
T Consensus       348 g~v~~wDaRtG~l~~~y~  365 (399)
T KOG0296|consen  348 GKVRQWDARTGQLKFTYT  365 (399)
T ss_pred             ceEEeeeccccceEEEEe
Confidence            999999999999987665

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=215.61  Aligned_cols=292  Identities=19%  Similarity=0.245  Sum_probs=219.6

Q ss_pred             cCCcceeeeecCCCceeE-EccCCCchhhhhhcccccCCCCcccccccccCCCCCccccccCCccccccchhhHHhhhhh
Q 009614          142 KDHAACRIDDWGKGADLV-VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKV  220 (531)
Q Consensus       142 ~~~~~~~~~~~d~g~~~~-~~~~~~~~~~~~~~lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~k~~  220 (531)
                      .+...|.++|+..|...+ ++.-...++...   .-+. +..+....+.+-.-    .+|+..+.+...           
T Consensus        15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl---~~l~-~~yllsaq~~rp~l----~vw~i~k~~~~~-----------   75 (476)
T KOG0646|consen   15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASL---TALN-NEYLLSAQLKRPLL----HVWEILKKDQVV-----------   75 (476)
T ss_pred             CCCcceeEEecCCCceeEEecCcccccchhh---hhhc-hhheeeecccCccc----cccccCchhhhh-----------
Confidence            355669999999999977 444423222221   1111 23343444433211    134333322111           


Q ss_pred             ccccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE
Q 009614          221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA  300 (531)
Q Consensus       221 ~~~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La  300 (531)
                               ......+.+.+++-+|+|.+++.|+..|.|++|.+..+..       ...+.+|-.+|+|+.|+-||.+|+
T Consensus        76 ---------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-------L~v~~aHYQ~ITcL~fs~dgs~ii  139 (476)
T KOG0646|consen   76 ---------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-------LNVLSAHYQSITCLKFSDDGSHII  139 (476)
T ss_pred             ---------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH-------HHHHHhhccceeEEEEeCCCcEEE
Confidence                     0011235677899999999999999999999999986553       334788999999999999999999


Q ss_pred             EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      |||.||.|.+|.+...-.                 .+                        .+.            ..+|
T Consensus       140 TgskDg~V~vW~l~~lv~-----------------a~------------------------~~~------------~~~p  166 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVS-----------------AD------------------------NDH------------SVKP  166 (476)
T ss_pred             ecCCCccEEEEEEEeecc-----------------cc------------------------cCC------------Cccc
Confidence            999999999999743210                 00                        000            1367


Q ss_pred             eeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          381 LHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      ++.+..|+-+|+++...+.|   +|+|++.|.++++||+..+..+.++..+..+.+++.+| .+..++.|+.+|+|.+.+
T Consensus       167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeee
Confidence            88999999999999998875   99999999999999999999999999999999999999 899999999999999988


Q ss_pred             CCCCe-----------------EEEecCCCC--ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          458 VRRCQ-----------------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       458 ~~~~~-----------------~~~~~~~~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                      +.+..                 ...+.+|.+  .|++++++-||.+|++|+.||+|+|||+.+.+++.....        
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~--------  317 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT--------  317 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh--------
Confidence            75422                 223677877  999999999999999999999999999999988865542        


Q ss_pred             CCceeeeEEEee
Q 009614          519 PGKRITGFQVVK  530 (531)
Q Consensus       519 ~~~~It~l~f~p  530 (531)
                      ....||.+++.|
T Consensus       318 ~kgpVtnL~i~~  329 (476)
T KOG0646|consen  318 SKGPVTNLQINP  329 (476)
T ss_pred             hccccceeEeec
Confidence            125778888765

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.2e-25  Score=202.44  Aligned_cols=260  Identities=16%  Similarity=0.199  Sum_probs=213.2

Q ss_pred             eeeeecCCCceeEEccCCCchhhhhhcccccCC---CCcccccccccCCCCCccccccCCccccccchhhHHhhhhhccc
Q 009614          147 CRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRG  223 (531)
Q Consensus       147 ~~~~~~d~g~~~~~~~~~~~~~~~~~~lr~v~~---~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~k~~~~~  223 (531)
                      -+|+++-.+..|.|+....++|.++  +|.|++   ++.|+.+.|+.+..     +++....+++...            
T Consensus        39 vriw~~~~~~s~~ck~vld~~hkrs--VRsvAwsp~g~~La~aSFD~t~~-----Iw~k~~~efecv~------------   99 (312)
T KOG0645|consen   39 VRIWSTSSGDSWTCKTVLDDGHKRS--VRSVAWSPHGRYLASASFDATVV-----IWKKEDGEFECVA------------   99 (312)
T ss_pred             EEEEecCCCCcEEEEEeccccchhe--eeeeeecCCCcEEEEeeccceEE-----EeecCCCceeEEe------------
Confidence            4677777788899999999999999  999999   99999999999888     6665555544433            


Q ss_pred             cccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe
Q 009614          224 WLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG  303 (531)
Q Consensus       224 w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs  303 (531)
                            .+.+|...|.+++|+++|.+||++++|+.|-||.+....    .+.+...++.|+..|..+.|+|...+|++++
T Consensus       100 ------~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd----Efec~aVL~~HtqDVK~V~WHPt~dlL~S~S  169 (312)
T KOG0645|consen  100 ------TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD----EFECIAVLQEHTQDVKHVIWHPTEDLLFSCS  169 (312)
T ss_pred             ------eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC----cEEEEeeeccccccccEEEEcCCcceeEEec
Confidence                  456677777789999999999999999999999988322    3445567899999999999999999999999


Q ss_pred             CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      .|.+|++|+-..+..                                                           -..+++
T Consensus       170 YDnTIk~~~~~~ddd-----------------------------------------------------------W~c~~t  190 (312)
T KOG0645|consen  170 YDNTIKVYRDEDDDD-----------------------------------------------------------WECVQT  190 (312)
T ss_pred             cCCeEEEEeecCCCC-----------------------------------------------------------eeEEEE
Confidence            999999998542110                                                           012677


Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      +.+|...|.+++|+|.| .|++++.|++|+||-..+.   -...|+..+..+.|.   ...|++++.|+.|++|.-....
T Consensus       191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~  264 (312)
T KOG0645|consen  191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSP  264 (312)
T ss_pred             ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec---ccceEeccCCCEEEEEEecCCC
Confidence            89999999999999999 9999999999999986622   122378899999996   4689999999999999876531


Q ss_pred             ------EE--EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 009614          463 ------VV--DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       463 ------~~--~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~  500 (531)
                            ++  .-..|...|+++.|.|. .+.|++|+.||.|++|.+.
T Consensus       265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                  11  23567789999999995 6789999999999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=2.7e-24  Score=240.97  Aligned_cols=277  Identities=12%  Similarity=0.130  Sum_probs=208.9

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc-cccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I  308 (531)
                      +..|...+.+++|+|+|.++|+|+.|+.|+||+.......... ......+. +...|.+++|++ ++.+||+++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4456677888999999999999999999999997642111100 01112233 456899999987 57899999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+.+++.+..+..+...+.++.|.+....               ..++++.++.+.+|+....    ..+..+..+ 
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---------------~L~Sgs~Dg~v~iWd~~~~----~~~~~~~~~-  617 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---------------LLASGSDDGSVKLWSINQG----VSIGTIKTK-  617 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---------------EEEEEcCCCEEEEEECCCC----cEEEEEecC-
Confidence            99999998888878777777777777643322               2356778889999998653    334555544 


Q ss_pred             CCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCe-EEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC---
Q 009614          389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---  461 (531)
Q Consensus       389 ~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~-~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~---  461 (531)
                      ..|.++.|++ ++ +|++|+.|+.|++||+++.. .+..+ .|...|+++.|.  ++.+|++++.|++|+|||++..   
T Consensus       618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccc
Confidence            6799999965 56 99999999999999998765 34444 599999999996  5789999999999999999753   


Q ss_pred             ---eE-EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec----cc-ccCCCceeeeEEEee
Q 009614          462 ---QV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ----GK-KKLPGKRITGFQVVK  530 (531)
Q Consensus       462 ---~~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~----~~-kk~~~~~It~l~f~p  530 (531)
                         .. ..+.+|...+..++|+|++.+|++|+.||.|++|+......+..+.....    +. ...+...|.+++|+|
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence               23 35788999999999999999999999999999999887665543332111    10 122345688888875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=218.91  Aligned_cols=220  Identities=20%  Similarity=0.313  Sum_probs=186.0

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~  309 (531)
                      +....+.+.++.|..||.++|+|...|.|+|+|++...       ....+.+|+.+|..+.|+| ++..|++|++|+.++
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK  136 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence            33445677789999999999999999999999965321       2235789999999999999 556788999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +||+.+...                                                              ...+.+|+.
T Consensus       137 ~~d~s~a~v--------------------------------------------------------------~~~l~~htD  154 (487)
T KOG0310|consen  137 YWDLSTAYV--------------------------------------------------------------QAELSGHTD  154 (487)
T ss_pred             EEEcCCcEE--------------------------------------------------------------EEEecCCcc
Confidence            999876531                                                              235678999


Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEE
Q 009614          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD  465 (531)
Q Consensus       390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~  465 (531)
                      .|.|.+|+|..  .++||+.||+|++||++.. ..+..+.|..+|..|.+-| .+..|++++. ..|+|||+.+| +.+.
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehh
Confidence            99999999976  8999999999999999987 8888999999999999999 8899998875 58999999965 4443


Q ss_pred             -ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          466 -YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       466 -~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                       ...|...|||+++..++..|++|+.|+.|++||+.+-+.+..+..+         ..|.+++.+|
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~pvLsiavs~  289 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GPVLSIAVSP  289 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cceeeEEecC
Confidence             5559999999999999999999999999999999998888877654         5667766665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=231.35  Aligned_cols=246  Identities=20%  Similarity=0.279  Sum_probs=212.0

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      .++..++|+|...+++++-..|.|++||++-       ......|..|.++|..|.|+|++.+++|||+|-.|+||+..+
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM-------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhh-------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            5666799999999999999999999999982       223446889999999999999999999999999999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .+++.++..|...+..+.|...-                -.+++.+.|.++.+|+...    .+.+..+.||...|.|..
T Consensus        83 rrclftL~GHlDYVRt~~FHhey----------------PWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEY----------------PWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCC----------------ceEEEccCCCeEEEEeccC----CceEEEEecCceEEEeec
Confidence            99999998888877777665432                3457788999999998776    466899999999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCe---------------------------EE--EEe-ecCCceEEEEEeeCCCCEE
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGIDR---------------------------CL--RVF-SHNNYVTSVAFNPVDDNYF  444 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~---------------------------~l--~~~-~h~~~V~sv~fsp~d~~~l  444 (531)
                      |+|.. .++++|-|.+||+||+..-+                           .+  ..+ +|.-.|+-++|+| .-.+|
T Consensus       143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli  221 (1202)
T KOG0292|consen  143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI  221 (1202)
T ss_pred             cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence            99977 99999999999999985210                           11  111 3888999999999 88999


Q ss_pred             EEEeCCCeEEEEeCCCCeEE---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          445 ISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ++|+.|..|++|.+...+..   ...+|.+.|+++-|+|...+|++.+.|++|++||+...+.++++.
T Consensus       222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence            99999999999999876544   578999999999999999999999999999999999988888774

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=2.9e-25  Score=199.28  Aligned_cols=212  Identities=19%  Similarity=0.380  Sum_probs=182.5

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (531)
                      -+|++++.|.+|++|+..++.       +..+++...+.|+.+...|+++.||+|+. ..||+||+.++..         
T Consensus        11 viLvsA~YDhTIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---------   73 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---------   73 (311)
T ss_pred             eEEEeccCcceeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---------
Confidence            368899999999999988544       44567777889999999999999998875 5799999987652         


Q ss_pred             CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe
Q 009614          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (531)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s  406 (531)
                                                                         .|+.++.+|++.|+.+.|..+| .+++|+
T Consensus        74 ---------------------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs  102 (311)
T KOG0315|consen   74 ---------------------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGS  102 (311)
T ss_pred             ---------------------------------------------------CceeEEeccCCceEEEEEeecCeEEEecC
Confidence                                                               3578899999999999999999 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCE
Q 009614          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKG  484 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~  484 (531)
                      .||+++|||++...+.+.|.|..+|++|..+| +..-|++|..+|.|+|||+....+..  .......|.++...|||.+
T Consensus       103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm  181 (311)
T KOG0315|consen  103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM  181 (311)
T ss_pred             CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence            99999999999999999999999999999999 88899999999999999999876553  4455678999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       485 l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |+.+...|++++|++-+.+....  +.+..|.+.+...|+...|+|
T Consensus       182 l~a~nnkG~cyvW~l~~~~~~s~--l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  182 LAAANNKGNCYVWRLLNHQTASE--LEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             EEEecCCccEEEEEccCCCcccc--ceEhhheecccceEEEEEECC
Confidence            99999999999999987543332  334445677888999988887

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.4e-25  Score=228.05  Aligned_cols=247  Identities=21%  Similarity=0.293  Sum_probs=206.0

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~  309 (531)
                      +.+|.+.+.++....+|-+|++|++|.++++|.+++...   ...+.+...+|+..|.+|+++..+ .+|+++|.|++|+
T Consensus       361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence            566777777877667888999999999999998844332   223344567999999999998754 4899999999999


Q ss_pred             EEEcccCccc---------cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          310 VWKVIEHERL---------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       310 iWd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      +|++...+..         .....|...+.++...++..                ...+++.|.+..+|....    ...
T Consensus       438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk----------------LiAT~SqDktaKiW~le~----~~l  497 (775)
T KOG0319|consen  438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK----------------LIATGSQDKTAKIWDLEQ----LRL  497 (775)
T ss_pred             EecCCCcccccccceehhhHHHHhhcccccceEecCCCc----------------eEEecccccceeeecccC----ceE
Confidence            9999762211         12234555666666665542                235678888999998874    345


Q ss_pred             eeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ..++.||...|.++.|+|.. .++|+|.|++|+||.+.+..|+++|. |...|..+.|-. ++..|++++.||-|+||++
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEec
Confidence            78999999999999999988 99999999999999999999999997 999999999998 9999999999999999999


Q ss_pred             CCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       459 ~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      .++.++ .+..|.+.|++++.+|....+++|+.||.|.+|.=.+
T Consensus       577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            999988 5899999999999999999999999999999996443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=3.9e-25  Score=231.27  Aligned_cols=248  Identities=24%  Similarity=0.354  Sum_probs=209.1

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ...+.+|...+..++|+|++.++++|+.|++|+||++..      .....+++++|...|++++|+|+|+++++|+.|++
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t  269 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT  269 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccC------CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence            334567888889999999999999999999999999943      22344578999999999999999999999999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |+|||+.++++...+..+...+..+.+..+..                ..+.++.++.+.+|+.......  .+..+.++
T Consensus       270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~----------------~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~  331 (456)
T KOG0266|consen  270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGN----------------LLVSASYDGTIRVWDLETGSKL--CLKLLSGA  331 (456)
T ss_pred             EEEEeccCCeEEEeeeccCCceEEEEECCCCC----------------EEEEcCCCccEEEEECCCCcee--eeecccCC
Confidence            99999999999999999999888887766553                2244577899999999886643  34555665


Q ss_pred             CCC--eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCc---eEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          388 SSE--VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY---VTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       388 ~~~--I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~---V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ...  ++++.|+|++ +|++++.|+++++||+..+.++..+. |...   +.+...++ .+.++++|+.|+.|++||+.+
T Consensus       332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCc
Confidence            555  9999999999 99999999999999999999988886 5553   34445566 899999999999999999998


Q ss_pred             CeEE-EecCC-CCceEEEEEccCCCEEEEEe--CCCcEEEEeCC
Q 009614          461 CQVV-DYTDI-REIVSAVCYCPDGKGGIVGT--MTGNCRFYDIK  500 (531)
Q Consensus       461 ~~~~-~~~~~-~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~  500 (531)
                      +..+ .+.+| ...+..+.|+|..+++++++  .|+.+++|...
T Consensus       411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            7666 57788 88999999999999999998  68889999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=212.36  Aligned_cols=269  Identities=19%  Similarity=0.266  Sum_probs=192.1

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+..|.+.|--+.|+++|++||++++|.+..||++.....    +...+++.+|..+|.-+.||||.++|++|+.|..+.
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            4555666777789999999999999999999998874332    445567899999999999999999999999999999


Q ss_pred             EEEcccCccccceecC-CCCCeeEEEeecCCccee--------eeeccccccc--------cccccccCCCceEEEeCC-
Q 009614          310 VWKVIEHERLDGFDVQ-DTDPSCLYFTINHLSQLI--------PIDVDKEKID--------KTKSLRKSSDLTCVVLPP-  371 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-  371 (531)
                      +||+.+|.....+... ...+.+..|.++....+.        .++.++....        +...+..+.|+..++.-. 
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999999988777654 455666777666544222        2222222111        111222223332221111 


Q ss_pred             -ccccc---cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cC--CceEEEEEeeCCCCE
Q 009614          372 -KVFRL---LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAFNPVDDNY  443 (531)
Q Consensus       372 -~~~~~---~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~--~~V~sv~fsp~d~~~  443 (531)
                       +...+   ..+.-..+.....+|++++.+.++ ++++.-.+..|.+||+.....++.+. |.  ..+-.-||--.+..+
T Consensus       375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f  454 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF  454 (519)
T ss_pred             ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence             00000   011111133445678888888888 66677778888888888766665553 43  445555676556789


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 009614          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~  502 (531)
                      +++||.|++|+||+..+++++ .+.+|...|++|+|+|. ..++|+|+.||+||||.....
T Consensus       455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            999999999999999999988 59999999999999994 568899999999999987643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=7.1e-25  Score=222.85  Aligned_cols=250  Identities=19%  Similarity=0.275  Sum_probs=202.8

Q ss_pred             cccccee-eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          236 DRHGSAT-LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       236 ~~~~s~~-fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      +.+..++ +-|+.+++|+++..+.+++|+..+...        +.+.||+..|.++....+|.+|+||+.|+++++|.+.
T Consensus       324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             hhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence            3344443 568889999999999999997764332        3689999999999966688899999999999999884


Q ss_pred             cCc----cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc-ee----Eee
Q 009614          315 EHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-LH----EFQ  385 (531)
Q Consensus       315 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~  385 (531)
                      ++.    ++.....+...+.++.+...               .....++++.|..+.+|+...-.....+ +.    +..
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~---------------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~  460 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKL---------------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER  460 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeeccc---------------CccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence            433    23333444454554444222               2334467788899999987662222111 11    345


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      .|...|++++++|+. +++|||.|++.+||++.....+.++. |...|+||.|+| .++.++++|.|++|+||.+.+..+
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSC  539 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSC  539 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecccee
Confidence            699999999999999 99999999999999999989999986 999999999999 889999999999999999999999


Q ss_pred             EE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          464 VD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       464 ~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ++ +.+|...|..+.|-.+|+.|++++.||.++||+++++.++..+.
T Consensus       540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence            95 77899999999999999999999999999999999999887654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=186.21  Aligned_cols=259  Identities=19%  Similarity=0.310  Sum_probs=198.1

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc--------ccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--------LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~--------~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ..+.+++|+|.|.+.|+|+...+.+|-.+......        .......+.-+.|.+.|+|.+|+|+|.+||+|+.|++
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence            35667999999999999999999999866532211        0011122334679999999999999999999999999


Q ss_pred             EEEEEcccCccc-----cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          308 VRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       308 I~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      |++.......+.     .++..+...+.-+.|.......-.           .....+..+-.+++-+...    +++++
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-----------il~s~gagdc~iy~tdc~~----g~~~~  177 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-----------ILASAGAGDCKIYITDCGR----GQGFH  177 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-----------EEEecCCCcceEEEeecCC----CCcce
Confidence            999876543322     234555666666666544332211           1112334455555555544    56789


Q ss_pred             EeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---c-----CCceEEEEEeeCCCCEEEEEeCCCeE
Q 009614          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---H-----NNYVTSVAFNPVDDNYFISGSIDGKV  453 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h-----~~~V~sv~fsp~d~~~l~sgs~Dg~I  453 (531)
                      .+.+|++.|..+- +=++ ++++|+.|++|++||++-..++.++.   |     ...|.+++..| .+++|++|-.|...
T Consensus       178 a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc  255 (350)
T KOG0641|consen  178 ALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC  255 (350)
T ss_pred             eecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence            9999999999884 2245 99999999999999999999998885   2     36799999999 99999999999999


Q ss_pred             EEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeee
Q 009614          454 RIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL  512 (531)
Q Consensus       454 ~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~  512 (531)
                      .+||++.++.++ +..|...|.++.|+|...|+++++.|..|++=|++ |.+..+..+-+
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~v  314 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMV  314 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEE
Confidence            999999999884 88999999999999999999999999999999998 44555554433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.93  E-value=2.5e-24  Score=211.23  Aligned_cols=248  Identities=19%  Similarity=0.328  Sum_probs=202.2

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC----C
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----G  306 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g  306 (531)
                      ++.|...+.-..++|.|.++|+|...|+|+||+.......++     .+++.-.++|..|+|+.+++.|+..++.    |
T Consensus        55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-----nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-----NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-----eeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            444544555578999999999999999999999886544333     4567778999999999999999887753    3


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .+.+||  +|..+.++..+...+..+.+.+..               ....++++.|..+.+|.-..|+.    ..++..
T Consensus       130 ~~F~~D--SG~SvGei~GhSr~ins~~~KpsR---------------PfRi~T~sdDn~v~ffeGPPFKF----k~s~r~  188 (603)
T KOG0318|consen  130 HVFLWD--SGNSVGEITGHSRRINSVDFKPSR---------------PFRIATGSDDNTVAFFEGPPFKF----KSSFRE  188 (603)
T ss_pred             EEEEec--CCCccceeeccceeEeeeeccCCC---------------ceEEEeccCCCeEEEeeCCCeee----eecccc
Confidence            455555  677777777777666665555443               34456778888888887666543    456778


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      |...|.|+.|+|+| ++++.+.||+|.+||=.+++.+..+.    |.+.|.+|+|+| |+..|++++.|.+++|||+.+.
T Consensus       189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeecc
Confidence            99999999999999 99999999999999999999999985    999999999999 9999999999999999999765


Q ss_pred             eEE--------------------------------------------EecCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          462 QVV--------------------------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       462 ~~~--------------------------------------------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw  497 (531)
                      +++                                            ...+|...|+++..+||+++|++|+.||.|.-|
T Consensus       268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            421                                            135688899999999999999999999999999


Q ss_pred             eCCCCeEE
Q 009614          498 DIKDNQLY  505 (531)
Q Consensus       498 d~~~~~l~  505 (531)
                      +..++..-
T Consensus       348 ~~~~g~~~  355 (603)
T KOG0318|consen  348 DSGSGTSD  355 (603)
T ss_pred             ecCCcccc
Confidence            99887643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-24  Score=196.62  Aligned_cols=253  Identities=18%  Similarity=0.252  Sum_probs=197.8

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|..++..+.++.+|.+|.++++|..+.||-..+++       ..-++.||+++|+|+..+-+.++|+||+.|.+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------eeeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence            356677778889999999999999999999999765433       3347899999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc---cccCcceeEeec
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF---RLLEKPLHEFQG  386 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  386 (531)
                      +||+.+|+++..++.... +..+.|.......++..+  .         .-+....+.+++.+.-   ...+.|+..+..
T Consensus        78 LWDv~tGk~la~~k~~~~-Vk~~~F~~~gn~~l~~tD--~---------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSP-VKRVDFSFGGNLILASTD--K---------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             EEEcCCCcEEEEeecCCe-eEEEeeccCCcEEEEEeh--h---------hcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            999999998887765432 334444443332222221  1         1122333444444321   123567888888


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      +...++.+-|.|-+ .|++|..||.|.+||+++++.+..-.  |...|+.|+++| +..+|++++.|.+-++||+.+.++
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceee
Confidence            99999999999998 99999999999999999986655442  999999999999 999999999999999999876432


Q ss_pred             E--------------------------------------------------------EecCCCCceEEEEEccCCCEEEE
Q 009614          464 V--------------------------------------------------------DYTDIREIVSAVCYCPDGKGGIV  487 (531)
Q Consensus       464 ~--------------------------------------------------------~~~~~~~~v~~v~~spdg~~l~s  487 (531)
                      +                                                        ...+|-++|++|+|+|+|+..++
T Consensus       225 ~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS  304 (327)
T KOG0643|consen  225 LKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS  304 (327)
T ss_pred             EEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence            1                                                        12457788999999999999999


Q ss_pred             EeCCCcEEEEeCCCC
Q 009614          488 GTMTGNCRFYDIKDN  502 (531)
Q Consensus       488 gs~dg~I~iwd~~~~  502 (531)
                      |+.||.|++......
T Consensus       305 GGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  305 GGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCCceEEEEEeccc
Confidence            999999999876543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=1.8e-24  Score=204.74  Aligned_cols=248  Identities=19%  Similarity=0.295  Sum_probs=195.8

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC---CEEEEEeCCCcEEE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRV  310 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~i  310 (531)
                      |.+-|.++...  +.++++|+.||.++||+.....        ...+.||.++|.+++|....   ..|++++.|.++++
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L  173 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL  173 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence            34555555554  7799999999999999987433        34578999999998885433   36999999999999


Q ss_pred             EEcccCccccc----eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc-------------
Q 009614          311 WKVIEHERLDG----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-------------  373 (531)
Q Consensus       311 Wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  373 (531)
                      |.+..+.....    ...|...+.++......                ...++++.|..+.+|+...             
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg----------------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSG----------------TRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCC----------------CeEEeecccceeeecccCCCccccccccchhh
Confidence            99987764322    23444444444332222                2335667777777777110             


Q ss_pred             --------ccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          374 --------FRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       374 --------~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                              ......|+..+.||..+|.++.|++.+.+++++.|.+|+.||+.++.++..+..+..++||.++| ..++|+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~  316 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLA  316 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceee
Confidence                    01124688899999999999999997799999999999999999999999999999999999999 999999


Q ss_pred             EEeCCCeEEEEeCCCC--eEE--EecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe-EEEEe
Q 009614          446 SGSIDGKVRIWEVRRC--QVV--DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQ-LYQQN  508 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~--~~~--~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~-l~~~~  508 (531)
                      +|+.|..|++||.+++  .++  .+.+|...|.++.|+|.. ..|++|+.||++++||+++.+ .+..+
T Consensus       317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI  385 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI  385 (423)
T ss_pred             ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence            9999999999999985  344  589999999999999965 568899999999999999877 55544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=7.5e-24  Score=205.75  Aligned_cols=237  Identities=27%  Similarity=0.466  Sum_probs=195.6

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +...+..+.|+|+++++++++.+|.|++|++....       ....+..|...|.++.|+++++++++++.||.|++||+
T Consensus        50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            33445578999999999999999999999998542       23356789999999999999999999988999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++....+..+...+.++.+.+..  .+              .+.+..++.+.+|+...    .+++..+..|...|.+
T Consensus       123 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~--------------l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~  182 (289)
T cd00200         123 ETGKCLTTLRGHTDWVNSVAFSPDG--TF--------------VASSSQDGTIKLWDLRT----GKCVATLTGHTGEVNS  182 (289)
T ss_pred             CCcEEEEEeccCCCcEEEEEEcCcC--CE--------------EEEEcCCCcEEEEEccc----cccceeEecCccccce
Confidence            9887777766555555565555441  11              12233466788887764    3446677789999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCC
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR  470 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~  470 (531)
                      +.|+|++ .+++++.|+.|++||++.++.+..+ .|...+.+++|+| ++.++++++.||.|++||+.+++.. .+..|.
T Consensus       183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence            9999999 8999999999999999999999888 6888999999999 7888888888999999999987766 466788


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      ..|.+++|+|++++|++++.||.|++|+
T Consensus       262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         262 NSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8999999999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=7.6e-24  Score=237.28  Aligned_cols=237  Identities=22%  Similarity=0.347  Sum_probs=187.6

Q ss_pred             ccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 009614          236 DRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       236 ~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~  313 (531)
                      ..+.+++|+| ++.+||+++.||.|+|||+....       ....+.+|.+.|++++|+| ++.+|++|+.||+|++||+
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            3455688887 47899999999999999987533       2345789999999999997 7899999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .++..+..+..+ ..+.++.+.....               ...+.++.++.+.+|+.+...   .++..+.+|...|.+
T Consensus       606 ~~~~~~~~~~~~-~~v~~v~~~~~~g---------------~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~  666 (793)
T PLN00181        606 NQGVSIGTIKTK-ANICCVQFPSESG---------------RSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSY  666 (793)
T ss_pred             CCCcEEEEEecC-CCeEEEEEeCCCC---------------CEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEE
Confidence            988776666532 2333444322211               223567788899999886532   246677899999999


Q ss_pred             EEEcCCCeEEEEeCCCcEEEEECCCC------eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614          394 LSWSKNGFLLSSSADKTVRLWQVGID------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (531)
Q Consensus       394 l~~sp~~~l~s~s~Dg~V~lwdl~~~------~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-  465 (531)
                      +.|.+..+|++++.|++|++||+..+      .++..+. |...+++++|+| ++.+|++|+.|+.|+||+......+. 
T Consensus       667 v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s  745 (793)
T PLN00181        667 VRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLS  745 (793)
T ss_pred             EEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEE
Confidence            99985459999999999999999743      4566664 889999999999 89999999999999999987653321 


Q ss_pred             -------------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          466 -------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       466 -------------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                                   ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus       746 ~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        746 YKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence                         1234567999999999999999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=3.4e-25  Score=207.94  Aligned_cols=209  Identities=21%  Similarity=0.351  Sum_probs=185.6

Q ss_pred             ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (531)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (531)
                      .+.+++|.+.|.|+++.|.+.+|+||+.|++|+|||+.+++...++..+...+..+.++..+.                +
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp----------------Y  207 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP----------------Y  207 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc----------------e
Confidence            346889999999999999999999999999999999999999888887777777766665543                4


Q ss_pred             ccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEE
Q 009614          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSV  434 (531)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv  434 (531)
                      .++.+.+..+..|+...    .+.+..+.||-..|.|++.+|.- .|++|+.|.++|+||+++...+.++. |..+|.++
T Consensus       208 lFs~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V  283 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV  283 (460)
T ss_pred             EEEecCCCeeEEEechh----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence            46677888899998876    34578899999999999999987 99999999999999999999999996 99999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      .+.| ....+++|+.|++|++||++.++.. .+..|...|.+++.+|.-..+++++.|. |+-|++..|..++.
T Consensus       284 ~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  284 MCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN  355 (460)
T ss_pred             Eeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence            9999 5667999999999999999998766 6888999999999999999999999775 99999999988876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=201.11  Aligned_cols=221  Identities=16%  Similarity=0.314  Sum_probs=183.8

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCC------cc-----cccccccceEEcccCCCEEEEEEccCCCE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ------SR-----ELSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~------~~-----~~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (531)
                      -++.|+....+.+|+|||.++|+|+.|-.|+|.|+...      ..     ........+++..|...|+++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            35667777888999999999999999999999999721      11     11122345678899999999999999999


Q ss_pred             EEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       299 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      |++|+.|++|+++|+......+.++                                                       
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K-------------------------------------------------------  211 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFK-------------------------------------------------------  211 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHH-------------------------------------------------------
Confidence            9999999999999986543222111                                                       


Q ss_pred             cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeE
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I  453 (531)
                          . .....+|.+|.|+|.| +|+.|....++++||+.+.+|...-.    |.+.|+++.+++ .+++.++|+.||.|
T Consensus       212 ----~-~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~I  285 (430)
T KOG0640|consen  212 ----V-FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAI  285 (430)
T ss_pred             ----H-hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcE
Confidence                1 1134579999999999 99999999999999999999876653    899999999999 99999999999999


Q ss_pred             EEEeCCCCeEEEe--cCC-CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          454 RIWEVRRCQVVDY--TDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       454 ~Iwd~~~~~~~~~--~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +|||--+++++..  ..| ...|.+..|..+|+||++.+.|..+++|.+.+++.+..+...
T Consensus       286 klwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  286 KLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             EeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence            9999999888853  223 457999999999999999999999999999999999887644

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=203.10  Aligned_cols=262  Identities=13%  Similarity=0.186  Sum_probs=195.1

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+++|++.|.++.|+.+|.+||+|.-+|.|+||+..++.....       +..--..|.-|.|+|.+..|+.|+.||.|-
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~-------~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK-------LDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE-------eecccCceEEEEecccccEEEeecCCCcEE
Confidence            5788999999999999999999999999999999987665433       333456788999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCccee--------eeecccccc-------------------ccccccccCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--------PIDVDKEKI-------------------DKTKSLRKSS  362 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-------------------~~~~~~~~~~  362 (531)
                      +|.+.+....+.+..+.....+-.+.+.....+.        .+.......                   .....+.++.
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            9999998777778877777766666655322211        111111000                   0001122222


Q ss_pred             CceEEEeCCcccccc---C-cceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEE
Q 009614          363 DLTCVVLPPKVFRLL---E-KPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV  434 (531)
Q Consensus       363 ~~~~~~~~~~~~~~~---~-~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv  434 (531)
                      ++..++......+..   . ........+...+.++.+.|..    +.++|+.||+|.|||+...+..+.+.|...|+.+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL  333 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence            222222222111110   0 0111112345556667666644    7889999999999999999998899999999999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .|-+  ..+|++++.+|+|++||.++++++ .+.+|...|.+++++|+++++++++.|++.+||++.
T Consensus       334 ~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  334 KWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9987  578999999999999999999987 699999999999999999999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2e-23  Score=219.17  Aligned_cols=231  Identities=15%  Similarity=0.276  Sum_probs=170.6

Q ss_pred             ccceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccc-cccceEEcccCCCEEEEEEccCCCE-EEEEeCC
Q 009614          229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQY-LASGGED  305 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~-~~~~~~l~~H~~~I~~l~fspdg~~-Lasgs~D  305 (531)
                      ..+.+|...|.+++|+|+ +.+||+|+.|+.|+||++......... ......+.+|...|.+++|+|++.. |++|+.|
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            346678888999999997 789999999999999999754321111 1123357899999999999998875 5799999


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ++|+|||+.+++..                                                              ..+.
T Consensus       148 gtIrIWDl~tg~~~--------------------------------------------------------------~~i~  165 (568)
T PTZ00420        148 SFVNIWDIENEKRA--------------------------------------------------------------FQIN  165 (568)
T ss_pred             CeEEEEECCCCcEE--------------------------------------------------------------EEEe
Confidence            99999999776421                                                              1122


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEE-----EEEeeCCCCEEEEEeCCC----eEE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-----VAFNPVDDNYFISGSIDG----KVR  454 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~s-----v~fsp~d~~~l~sgs~Dg----~I~  454 (531)
                       |...|.+++|+|+| +|++++.|+.|+|||+++++.+..+. |.+.+.+     ..|++ ++.+|++++.|+    .|+
T Consensus       166 -~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        166 -MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             -cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEE
Confidence             44679999999999 88999999999999999999988875 7765433     33457 788999988774    799


Q ss_pred             EEeCCC-CeEEEecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          455 IWEVRR-CQVVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       455 Iwd~~~-~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |||+++ .+++....   +...+......++|.++++|+.|++|++|++..+.+.. ..      .......+.+++|.|
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~-l~------~~~s~~p~~g~~f~P  316 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRK-VN------EYKSCSPFRSFGFLP  316 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEe-ec------ccccCCCccceEEcc
Confidence            999995 45554323   23333444445568999999999999999998775322 11      111335566777776

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.8e-24  Score=215.79  Aligned_cols=234  Identities=21%  Similarity=0.311  Sum_probs=201.1

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      .++.+..|-+-.+++++|+.|..|+|+++++..       ....+.+|.+-|++++.+|...+++|+++|-+|++||...
T Consensus        56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~  128 (794)
T KOG0276|consen   56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN  128 (794)
T ss_pred             cchhhheeeeccceEEEecCCceEEEEecccce-------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence            455667788888999999999999999999544       4467999999999999999999999999999999999976


Q ss_pred             C-ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          316 H-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       316 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      + .+.+.+..|..-+.++.+.|...+..               .+++-|.++.+|....    ..|..++.+|...|+|+
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntF---------------aS~sLDrTVKVWslgs----~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKDPNTF---------------ASASLDRTVKVWSLGS----PHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCCccce---------------eeeeccccEEEEEcCC----CCCceeeeccccCcceE
Confidence            4 56677888887777777777665544               4556677888887765    35678999999999999


Q ss_pred             EEcCCC---eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC
Q 009614          395 SWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI  469 (531)
Q Consensus       395 ~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~  469 (531)
                      .+-+.|   +|++|+.|.+|+|||.++..|++++. |...|..+.|+| .-.+|++|+.||+||||+..+-++.+ +.-.
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g  268 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYG  268 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence            999977   99999999999999999999999997 999999999999 88999999999999999999987764 4455


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEE
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRF  496 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~i  496 (531)
                      -+.+++|+-.+.+..+++|...|.|.+
T Consensus       269 leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  269 LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            678999999998888999988876643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=4.5e-24  Score=192.92  Aligned_cols=259  Identities=17%  Similarity=0.230  Sum_probs=198.9

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~  309 (531)
                      ...|..++.+++|+.+|..+++|+.|++++||++.....     .......+|.+.|-.++|+| +..+|++++.|.+|+
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            445667778899999999999999999999999986532     22235789999999999998 567899999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCC--------cceeeeeccccccccc-----------------cccccCCCc
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL--------SQLIPIDVDKEKIDKT-----------------KSLRKSSDL  364 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----------------~~~~~~~~~  364 (531)
                      +||++.+++...+......+ .+.|.+...        ..+..++....+....                 ..+..++.+
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            99999999887776544433 333333322        2222222221111100                 011122222


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCC
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN  442 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~  442 (531)
                      .+-+....    .-+|+..++.|+....||.|+|+| +|++|+.|..+.+||+..--|++.+. +.-+|..|.|+. +++
T Consensus       170 ~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~  244 (313)
T KOG1407|consen  170 CVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR  244 (313)
T ss_pred             eEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence            22222111    247889999999999999999999 99999999999999999999999996 899999999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC---------CcEEEEeCC
Q 009614          443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIK  500 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~  500 (531)
                      +||+||.|..|-|=++.+|..+.-..+.++-..|+|+|...+||.++.|         |.++||-+.
T Consensus       245 ~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  245 MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            9999999999999999999999888899999999999999999988775         456666543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.2e-24  Score=219.72  Aligned_cols=256  Identities=18%  Similarity=0.284  Sum_probs=205.8

Q ss_pred             hcccccccccc----ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC
Q 009614          220 VKRGWLKKLGA----MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD  295 (531)
Q Consensus       220 ~~~~w~~~~~~----~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd  295 (531)
                      ....|.-+.++    +..|.++|..+.|+|++.++++|+.|-.|+||+++.....       -++.||-+-|..+.|++.
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHhe  104 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHE  104 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-------hhhccccceeEEeeccCC
Confidence            34556655554    5678889999999999999999999999999999965543       358899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc
Q 009614          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (531)
Q Consensus       296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (531)
                      -.+++|+++|.+|+||++++.+++..+..|...+.|..|.+....                .++++-|.++.+|+....+
T Consensus       105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl----------------IVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL----------------IVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce----------------EEEecccceEEEEeecchh
Confidence            999999999999999999999999999888888888877765432                2344556666666653322


Q ss_pred             ccC-------------------------cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Ee-e
Q 009614          376 LLE-------------------------KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF-S  426 (531)
Q Consensus       376 ~~~-------------------------~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~-~  426 (531)
                      ...                         -..+.+.||...|+-++|+|.- ++++|+.|..|++|.+...+.-.  +. +
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence            110                         1235678999999999999988 99999999999999987544322  22 4


Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      |.+.|.++-|+| ..+++++.+.|+.|+|||+...+.+. +...++..+.++-+|..++++.|.. +-+.+|.++
T Consensus       249 H~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD-sGm~VFkle  321 (1202)
T KOG0292|consen  249 HYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD-SGMIVFKLE  321 (1202)
T ss_pred             ccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC-CceEEEEEc
Confidence            999999999999 89999999999999999999988875 5556778899999999997777664 445566655

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.5e-24  Score=224.44  Aligned_cols=216  Identities=22%  Similarity=0.331  Sum_probs=177.0

Q ss_pred             ce-eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc------c------------------cc-------------
Q 009614          231 MA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR------E------------------LS-------------  272 (531)
Q Consensus       231 ~~-~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~------~------------------~~-------------  272 (531)
                      +. .|.+.|-++.|++||+|||+|+.|+.|+||.+...+.      .                  ..             
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 6778888899999999999999999999998876000      0                  00             


Q ss_pred             ----------------ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEee
Q 009614          273 ----------------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI  336 (531)
Q Consensus       273 ----------------~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~  336 (531)
                                      .-.+..++.||.+.|.+|.||.++ +|++++.|++||+|++....++..|              
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F--------------  406 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF--------------  406 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE--------------
Confidence                            001123588999999999999765 8999999999999999776654332              


Q ss_pred             cCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEE
Q 009614          337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLW  414 (531)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lw  414 (531)
                                                                       .|...|+|++|+|..  ++++|+-|+.||||
T Consensus       407 -------------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  407 -------------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             -------------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEe
Confidence                                                             389999999999965  99999999999999


Q ss_pred             ECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---ecCC------CCceEEEEEccCC-CE
Q 009614          415 QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDI------REIVSAVCYCPDG-KG  484 (531)
Q Consensus       415 dl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~------~~~v~~v~~spdg-~~  484 (531)
                      ++...+.+.-.....-|++++|.| +|++.+.|+.+|.+++|++...+++.   ...+      ...|+.+.|.|.. ..
T Consensus       438 sI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~  516 (712)
T KOG0283|consen  438 SISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE  516 (712)
T ss_pred             ecCcCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence            999888877777779999999999 89999999999999999999887662   1111      2379999999844 45


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          485 GIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       485 l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +++.+.|..|||||+++..++.+++..
T Consensus       517 vLVTSnDSrIRI~d~~~~~lv~KfKG~  543 (712)
T KOG0283|consen  517 VLVTSNDSRIRIYDGRDKDLVHKFKGF  543 (712)
T ss_pred             EEEecCCCceEEEeccchhhhhhhccc
Confidence            888889999999999988888877643

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=3e-23  Score=216.78  Aligned_cols=210  Identities=20%  Similarity=0.249  Sum_probs=161.0

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc------cccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS------LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV  310 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~------~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~i  310 (531)
                      +.....++++..+++++.+.....|+...+...+..      ......+.+|.+.|++++|+| ++++|++|+.|++|+|
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI  102 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG  102 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            333455566666666666666666654432211100      001124789999999999999 8899999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.++.....                                                       ...++..+.+|...
T Consensus       103 Wdi~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~  127 (493)
T PTZ00421        103 WGIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKK  127 (493)
T ss_pred             EecCCCccccc-------------------------------------------------------cCcceEEecCCCCc
Confidence            99865431100                                                       01235667899999


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 009614          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (531)
Q Consensus       391 I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~  466 (531)
                      |.+++|+|.+  +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|++|+|||+++++.+ .+
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            9999999975  89999999999999999999888886 899999999999 9999999999999999999998876 45


Q ss_pred             cCCCCc-eEEEEEccCCCEEEEEe----CCCcEEEEeCCCCe
Q 009614          467 TDIREI-VSAVCYCPDGKGGIVGT----MTGNCRFYDIKDNQ  503 (531)
Q Consensus       467 ~~~~~~-v~~v~~spdg~~l~sgs----~dg~I~iwd~~~~~  503 (531)
                      ..|... +..+.|.+++..|++++    .|+.|++||+++..
T Consensus       207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            666654 45788999888887754    47899999998643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=1.9e-24  Score=194.01  Aligned_cols=202  Identities=20%  Similarity=0.348  Sum_probs=179.7

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      |+.-|.+++|+.|.++|++|+.+..++|++++......      .++.+|++.|..+-|....+.+++++.|++||+||.
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~  172 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH  172 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence            44556679999999999999999999999998765543      368899999999999998889999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .++..++.+.                                                               .+.+|++
T Consensus       173 rTgt~v~sL~---------------------------------------------------------------~~s~VtS  189 (334)
T KOG0278|consen  173 RTGTEVQSLE---------------------------------------------------------------FNSPVTS  189 (334)
T ss_pred             ccCcEEEEEe---------------------------------------------------------------cCCCCcc
Confidence            9988655442                                                               2456889


Q ss_pred             EEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCC
Q 009614          394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE  471 (531)
Q Consensus       394 l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~  471 (531)
                      +.++++|.+++....+.|++||..+-..++.+..+..|.+..++| +..+|++|+.|..++.||..++.-+.  ..+|.+
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g  268 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG  268 (334)
T ss_pred             eeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence            999999988888888999999999999999999999999999999 78999999999999999999998764  389999


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      +|.++.|+|||...++|+.||+|+||.+..++..
T Consensus       269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999999999877654

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.3e-22  Score=212.98  Aligned_cols=193  Identities=18%  Similarity=0.316  Sum_probs=155.9

Q ss_pred             eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccc-cceecCCCCCe
Q 009614          253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPS  330 (531)
Q Consensus       253 gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~-~~~~~~~~~~~  330 (531)
                      |+.++.|++|+.....       ....+.+|.++|++++|+|+ +.+||||+.||+|+|||+.++... ..+        
T Consensus        50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------  114 (568)
T ss_pred             CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------
Confidence            6678899999876432       23468899999999999996 789999999999999999754310 000        


Q ss_pred             eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCC
Q 009614          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD  408 (531)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~D  408 (531)
                                                                     ..++..+.+|...|.+++|+|++  .|++++.|
T Consensus       115 -----------------------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420        115 -----------------------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             -----------------------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence                                                           01345567899999999999988  56799999


Q ss_pred             CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEE-----EEEccCC
Q 009614          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDG  482 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~-----v~~spdg  482 (531)
                      ++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+ .+.+|.+.+..     ..|++++
T Consensus       148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            999999999999888888888999999999 9999999999999999999999876 46777765433     3456899


Q ss_pred             CEEEEEeCCC----cEEEEeCCC-CeEEEEe
Q 009614          483 KGGIVGTMTG----NCRFYDIKD-NQLYQQN  508 (531)
Q Consensus       483 ~~l~sgs~dg----~I~iwd~~~-~~l~~~~  508 (531)
                      .+|++++.++    .|+|||++. ++.+...
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            9999988774    799999985 5555443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.8e-23  Score=201.16  Aligned_cols=272  Identities=21%  Similarity=0.294  Sum_probs=214.9

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----------ccccceEE-cccCCCEEEEEEccCC
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------SLYTGQEF-LAHEGSILTMKFSLDG  296 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----------~~~~~~~l-~~H~~~I~~l~fspdg  296 (531)
                      +..+..|...+.+++++|++.+..+++.+++|.=|++..+...-.          .....+.- ++|...|.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            445666777888999999999999999999999999987664310          11111112 3899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       297 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      +|||+|+.|..|.||+..+.+.++.+..+...+.++.|......                .+.++.|..+.+|......+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~----------------lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE----------------LYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc----------------eeeeecCCceEEEehhHhHH
Confidence            99999999999999999999999998888888888877655432                34567778888888776544


Q ss_pred             cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                          +.++.+|+..|..|....-+ .+-.|+.|.++++|++.....+.-..+.+.+-|++|-  +...|++|+.+|.|.+
T Consensus       279 ----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  279 ----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             ----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence                66789999999999988777 4455569999999999666655555688899999997  5788999999999999


Q ss_pred             EeCCCCeEEEe--cCC-----------CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe----EEEEeeeeecccccC
Q 009614          456 WEVRRCQVVDY--TDI-----------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ----LYQQNQICLQGKKKL  518 (531)
Q Consensus       456 wd~~~~~~~~~--~~~-----------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~----l~~~~~~~~~~~kk~  518 (531)
                      |++.+.+++..  ..|           +.+|++++..|...++++|+.+|.|++|-+.+|-    ++..+.  +      
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~------  424 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--L------  424 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--c------
Confidence            99998877621  111           2279999999999999999999999999999883    233222  1      


Q ss_pred             CCceeeeEEEee
Q 009614          519 PGKRITGFQVVK  530 (531)
Q Consensus       519 ~~~~It~l~f~p  530 (531)
                       ..-|++|+|++
T Consensus       425 -~GfVNsl~f~~  435 (479)
T KOG0299|consen  425 -VGFVNSLAFSN  435 (479)
T ss_pred             -ccEEEEEEEcc
Confidence             24677777764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.5e-24  Score=191.63  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=193.3

Q ss_pred             ccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEccc
Q 009614          238 HGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      .-.++|+++. ..+++++.||.+++||......      +.+.++.|...|.++.|++ +++.+++++-|++|++|+...
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            3347888865 4667889999999999664333      3456889999999999999 566788889999999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .+.+.++..+...+....|.+...+.+               ...+.++.+.+|+.+..   ++++. +..|...|+++.
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf---------------as~Sgd~~l~lwdvr~~---gk~~~-i~ah~~Eil~cd  197 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLF---------------ASASGDGTLRLWDVRSP---GKFMS-IEAHNSEILCCD  197 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeE---------------EEccCCceEEEEEecCC---CceeE-EEeccceeEeec
Confidence            988888887777666666666554433               45678889999995543   55555 888999999999


Q ss_pred             EcCCC--eEEEEeCCCcEEEEECCCC-eEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCC
Q 009614          396 WSKNG--FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDI  469 (531)
Q Consensus       396 ~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~  469 (531)
                      |+.-.  .|+||+.|+.|++||++.- .++..+ .|.-.|..|.|+|....+|++++.|-++||||...+.-.  ....|
T Consensus       198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H  277 (311)
T KOG0277|consen  198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH  277 (311)
T ss_pred             ccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence            99866  9999999999999999864 344444 499999999999988889999999999999999865433  46678


Q ss_pred             CCceEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 009614          470 REIVSAVCYCP-DGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       470 ~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~  499 (531)
                      .+-+..+.|++ ++.++|+.+.|+.++||+.
T Consensus       278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceEEeccccccccCceeeecccccceeeecc
Confidence            88899999998 6678999999999999984

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=1.7e-23  Score=212.94  Aligned_cols=242  Identities=23%  Similarity=0.408  Sum_probs=191.6

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      +.+..|-|.+.++++|.+.|.+.|+|+..       .....++++|.++|+.|+.+||+..+++||.|.+|++|+..-..
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-------~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~  487 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLAS-------ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV  487 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeeh-------hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe
Confidence            34568999999999999999999999873       33445678999999999999999999999999999999974211


Q ss_pred             -----cccceec-------CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          318 -----RLDGFDV-------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       318 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                           ..+.+..       ....+.|+.++|+..  +.++.              --+.++.+|-...+    +....+.
T Consensus       488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk--~LaVs--------------LLdnTVkVyflDtl----KFflsLY  547 (888)
T KOG0306|consen  488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK--LLAVS--------------LLDNTVKVYFLDTL----KFFLSLY  547 (888)
T ss_pred             ccCcccceeeeeccceEEeccccEEEEEEcCCCc--EEEEE--------------eccCeEEEEEecce----eeeeeec
Confidence                 1111111       122344444444432  22221              11333444433332    3366789


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      ||.-+|.||..+|++ +++||+.|+.|++|-+.-|.|-+.+ .|.+.|+++.|-| ....|.+++.|+.|+-||-.....
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~  626 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEE  626 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhh
Confidence            999999999999999 9999999999999999999998876 5999999999999 889999999999999999998776


Q ss_pred             E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      + .+.+|...|++++.+|+|.++++++.|.+|++|......++.+
T Consensus       627 iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  627 IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence            6 6899999999999999999999999999999999876555443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=4.4e-23  Score=215.88  Aligned_cols=251  Identities=20%  Similarity=0.327  Sum_probs=206.0

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ..+.+..|+  +.++++++.+++|++|+..+.....      ..+.||.+.|+++++..-+.+|++|+.|.++++||..+
T Consensus       209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~------~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL------TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             chhhhheee--cCeEEecCCCceeEEeecccceEEE------eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            344455666  6789999999999999988544332      23889999999999988788999999999999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      +++...+..+...+.++....                  ...+.++.|.++.+|+...    .+.++.+.+|.++|.++.
T Consensus       281 g~C~~~l~gh~stv~~~~~~~------------------~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDP------------------FLLVSGSRDNTVKVWDVTN----GACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             CcEEEEecCCCceEEEEEccC------------------ceEeeccCCceEEEEeccC----cceEEEeccccccEEEEE
Confidence            999998887777666654322                  2334578899999999874    456788888999999999


Q ss_pred             EcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEE-ecCCCCc
Q 009614          396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD-YTDIREI  472 (531)
Q Consensus       396 ~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~-~~~~~~~  472 (531)
                      .+ ..++++|+.|++|++||+.++++++.+. |...|+++.+.+ . .++++|+.|++|++||+.+. +++. +.+|...
T Consensus       339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~  415 (537)
T KOG0274|consen  339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL  415 (537)
T ss_pred             ec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence            98 4499999999999999999999999996 999999998865 3 99999999999999999999 7764 7777777


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEE
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQV  528 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f  528 (531)
                      +..+.+  .++.|++++.||+|++||..++++++..+..       +...|+.+++
T Consensus       416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------~~~~v~~l~~  462 (537)
T KOG0274|consen  416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-------HVGGVSALAL  462 (537)
T ss_pred             cccccc--ccceeEeccccccEEEeecccCceeeeeccC-------CcccEEEeec
Confidence            755544  6789999999999999999999998876643       2345555554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=5.9e-24  Score=208.02  Aligned_cols=248  Identities=16%  Similarity=0.196  Sum_probs=184.1

Q ss_pred             ccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       225 ~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      ..+-..+.++...|.++++.|.|-.+++|+.|-.|++||+......+..+...+-  .....|+++.|++.|..|++.+.
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEec
Confidence            3344456667777888999999999999999999999999987766555443332  33457999999999999999998


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      ...++|+|-...+........                                        .++          .-+..-
T Consensus       235 ~aqakl~DRdG~~~~e~~KGD----------------------------------------QYI----------~Dm~nT  264 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGD----------------------------------------QYI----------RDMYNT  264 (641)
T ss_pred             CcceeEEccCCceeeeeeccc----------------------------------------hhh----------hhhhcc
Confidence            899999996443322111110                                        000          113445


Q ss_pred             ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee------cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      +||...++|.+|+|..  .+++++.||++||||+... ..+.++.      ..-++++++|+| ++++||+|+.||.|.+
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQI  343 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceee
Confidence            7899999999999987  9999999999999999753 4455554      335789999999 9999999999999999


Q ss_pred             EeCCCCeEE----EecCCCC--ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          456 WEVRRCQVV----DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       456 wd~~~~~~~----~~~~~~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      |+.....+.    .-..|..  .|++|.|++||++|++-+.|+++++||++.-+.-......+...     .+-|...|+
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-----~~~tdc~FS  418 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-----FPGTDCCFS  418 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-----CCCCccccC
Confidence            998654322    2344554  89999999999999999999999999998654332222222222     344666666


Q ss_pred             e
Q 009614          530 K  530 (531)
Q Consensus       530 p  530 (531)
                      |
T Consensus       419 P  419 (641)
T KOG0772|consen  419 P  419 (641)
T ss_pred             C
Confidence            5

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=1.3e-23  Score=200.92  Aligned_cols=268  Identities=17%  Similarity=0.220  Sum_probs=214.9

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...++.+.|-++...|++|+.|..|++|++.....+     ...++.|..++|+.+.|.+++.++++++.|+.++
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-----~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-----LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-----hhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            46677788888999999999999999999999999865533     2346778889999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +|++...+...++..|...+.++.+...+..                .+.++.+..+..|+.....-...++     ...
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------vVsgs~DRtiK~WDl~k~~C~kt~l-----~~S  303 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------VVSGSADRTIKLWDLQKAYCSKTVL-----PGS  303 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccc----------------eeeccccchhhhhhhhhhheecccc-----ccc
Confidence            9999999999999988887777666544322                3566777777777765532221111     233


Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe-c-
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-T-  467 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~-~-  467 (531)
                      .+.+|...+ ..+++|..|++||+||+++..+.......+.|+++..++ ++..+.+++.|.++.+.|+++..+... . 
T Consensus       304 ~cnDI~~~~-~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  304 QCNDIVCSI-SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             cccceEecc-eeeeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence            455665552 288999999999999999999999998788999999999 999999999999999999999877632 1 


Q ss_pred             ---CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614          468 ---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       468 ---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~  531 (531)
                         ......+.++|+|++.|+++|+.||.|+||++.++++....+..  +    ....|+++.|+|+
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s--~----s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS--T----SNAAITSLSWNPS  442 (459)
T ss_pred             cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--C----CCcceEEEEEcCC
Confidence               12234889999999999999999999999999999987654422  1    1127999999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.6e-23  Score=185.32  Aligned_cols=209  Identities=20%  Similarity=0.402  Sum_probs=180.4

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      ..+.+|+++|.++.|+-||+|.++|+.|.+|++|+...+.+++++..+...+.-+....+                ....
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------nskf   74 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------NSKF   74 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc----------------cccc
Confidence            467889999999999999999999999999999999999999998887766554443322                2344


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEee-cCCceEE
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTS  433 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~~~-h~~~V~s  433 (531)
                      .+++.|..+.+|+..+    ++.+..+.+|.+.|+.+.|+... .+++|+.|.++++||.++.  ++++.+. ..+.|.+
T Consensus        75 ~s~GgDk~v~vwDV~T----Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNT----GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             ccCCCCceEEEEEccc----CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            6788899999999987    45688899999999999999988 9999999999999999864  5677775 6788999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |..+   +..|++|+.||++|.||++.++... +.  ..+|++++|++||+..++++.|+++++.|-.+|++++.++-+
T Consensus       151 i~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  151 IDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             EEec---ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence            9984   5789999999999999999998763 44  458999999999999999999999999999999999876644

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.91  E-value=9.1e-23  Score=187.96  Aligned_cols=240  Identities=21%  Similarity=0.330  Sum_probs=193.4

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV  308 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I  308 (531)
                      .+.+|...|..+.|.+|+..+++++.|.+|+.||..+++..       ..+++|.+-|+.+.-+.-| .++.||+.||++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~-------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~  157 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI-------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL  157 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee-------ehhccccceeeecCccccCCeEEEecCCCceE
Confidence            34478888989999999999999999999999999976654       3478899999999855444 467888999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+++...++.+.... +...+.|...                ....+++.-+..+.+|+++..    ...+.+.||.
T Consensus       158 kl~D~R~k~~~~t~~~ky-qltAv~f~d~----------------s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~  216 (338)
T KOG0265|consen  158 KLWDIRKKEAIKTFENKY-QLTAVGFKDT----------------SDQVISGGIDNDIKVWDLRKN----DGLYTLSGHA  216 (338)
T ss_pred             EEEeecccchhhccccce-eEEEEEeccc----------------ccceeeccccCceeeeccccC----cceEEeeccc
Confidence            999999887766653211 1112222111                123356777888999998663    4478999999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCC----CeEEEEee---cC--CceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVFS---HN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~----~~~l~~~~---h~--~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ..|+.|..+|+| ++++-++|.++++||++.    .+++..|.   |+  .....++|+| ++.++.+|+.|..+++||.
T Consensus       217 DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  217 DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEeec
Confidence            999999999999 999999999999999973    45677774   33  3456778999 9999999999999999999


Q ss_pred             CCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       459 ~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .....+ .+.+|...|.++.|+|....|.+++.|.+|++=.
T Consensus       296 ~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  296 TSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            986554 7999999999999999999999999999988743

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.4e-22  Score=205.01  Aligned_cols=238  Identities=17%  Similarity=0.331  Sum_probs=199.8

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcc-cCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      .+.+.++.|+++|.+||+|..+|.|.|||......       ...+.+ |...|-+++|+  +..+.+|+.|+.|..+|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence            35677899999999999999999999999885443       334666 99999999998  668999999999999999


Q ss_pred             ccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          314 IEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      ...+.... +..+...+..+.|..+.                .....++.|..+.+|+...    ..++..+..|.+.|.
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~----------------~~lASGgnDN~~~Iwd~~~----~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDG----------------NQLASGGNDNVVFIWDGLS----PEPKFTFTEHTAAVK  347 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCC----------------CeeccCCCccceEeccCCC----ccccEEEeccceeee
Confidence            98876555 55555555555554433                3446788899999999833    567888999999999


Q ss_pred             EEEEcCCC--eEEEEe--CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE--EeCCCeEEEEeCCCCeEE-E
Q 009614          393 DLSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVV-D  465 (531)
Q Consensus       393 ~l~~sp~~--~l~s~s--~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s--gs~Dg~I~Iwd~~~~~~~-~  465 (531)
                      .++|+|-.  +||+|+  .|++|++||..++..+.......+|.+|.|++ ..+-|++  |..++.|.||+..+.+.+ .
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeee
Confidence            99999965  888875  79999999999999999999999999999999 5554554  345778999999997766 6


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      +.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999999775

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=3.7e-23  Score=198.75  Aligned_cols=201  Identities=23%  Similarity=0.344  Sum_probs=175.2

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      +...|....+++|+.|..+.++|.....       ....+.||...|+.+.|+|+...+++++.|..|+||.......  
T Consensus       225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--  295 (506)
T KOG0289|consen  225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--  295 (506)
T ss_pred             EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence            4455556899999999999999987544       3346899999999999999999999999999999998744321  


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~  400 (531)
                                                                                  ......|..+|+.+..+|+|
T Consensus       296 ------------------------------------------------------------~~~~~~h~~~V~~ls~h~tg  315 (506)
T KOG0289|consen  296 ------------------------------------------------------------PTSSRPHEEPVTGLSLHPTG  315 (506)
T ss_pred             ------------------------------------------------------------ccccccccccceeeeeccCC
Confidence                                                                        12245689999999999999


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEeecC---CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEE
Q 009614          401 -FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA  475 (531)
Q Consensus       401 -~l~s~s~Dg~V~lwdl~~~~~l~~~~h~---~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~  475 (531)
                       ||++++.|++..+.|++++.++....+.   -.+++.+||| ||.+|.+|..||.|+|||+..+..+ .+.+|.++|.+
T Consensus       316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA  394 (506)
T ss_pred             cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence             9999999999999999999999888764   3489999999 9999999999999999999998766 68999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       476 v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |+|+.+|-+|++++.|+.|++||++.-+.+.++++.
T Consensus       395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             EEeccCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence            999999999999999999999999988877766643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.91  E-value=3.5e-24  Score=200.33  Aligned_cols=250  Identities=20%  Similarity=0.359  Sum_probs=194.8

Q ss_pred             hhhhcccccccc----ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE
Q 009614          217 KRKVKRGWLKKL----GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF  292 (531)
Q Consensus       217 ~k~~~~~w~~~~----~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f  292 (531)
                      +-...+.|.+..    ..+.+|.+.|-|+.|  +.+.+++|+.|.+|+|||++++.       +.+++.+|..+|..+.|
T Consensus       215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge-------~l~tlihHceaVLhlrf  285 (499)
T KOG0281|consen  215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHCEAVLHLRF  285 (499)
T ss_pred             ccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc-------hhhHHhhhcceeEEEEE
Confidence            334456676643    346666666665554  66799999999999999999655       33467889999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcccCcccc---ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEe
Q 009614          293 SLDGQYLASGGEDGTVRVWKVIEHERLD---GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL  369 (531)
Q Consensus       293 spdg~~Lasgs~Dg~I~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (531)
                      +  ..+++|++.|.+|.+||+.....+.   .+..+...+.             .++++.     .+.+++++|.++.+|
T Consensus       286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN-------------vVdfd~-----kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-------------VVDFDD-----KYIVSASGDRTIKVW  345 (499)
T ss_pred             e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-------------eecccc-----ceEEEecCCceEEEE
Confidence            7  4589999999999999997654221   1222222222             222222     256788999999999


Q ss_pred             CCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe
Q 009614          370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       370 ~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      +..+.    ..+.++.+|...|-|+.+.. .++++|+.|.+|++||+..|.+++.+. |..-|.||.|   +.+.+++|+
T Consensus       346 ~~st~----efvRtl~gHkRGIAClQYr~-rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGa  417 (499)
T KOG0281|consen  346 STSTC----EFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA  417 (499)
T ss_pred             eccce----eeehhhhcccccceehhccC-eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeecc
Confidence            98774    45788999999999998742 299999999999999999999999996 9999999999   568999999


Q ss_pred             CCCeEEEEeCCCCeE----------EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          449 IDGKVRIWEVRRCQV----------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~----------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      .||+|+|||+.++.-          ..+..|.+.|..+.|  |...+++++.|.+|.|||..++-.-
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            999999999987531          146678889999988  5678999999999999999876554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=4.1e-23  Score=197.40  Aligned_cols=239  Identities=19%  Similarity=0.283  Sum_probs=192.8

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      ..+++.+....+.++.|.+++.++++++.|+.+++|++..       .....++.||++.|+++.|......+++|+.|.
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DR  283 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADR  283 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-------hhhhhhhcccccceeeehhhccccceeeccccc
Confidence            3456777778888999999999999999999999999984       334456899999999999998777799999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      +|++||+....+.+++.........+.                   .....+++..+.++..|+.+...    +......
T Consensus       284 tiK~WDl~k~~C~kt~l~~S~cnDI~~-------------------~~~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~  340 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGSQCNDIVC-------------------SISDVISGHFDKKVRFWDIRSAD----KTRSVPL  340 (459)
T ss_pred             hhhhhhhhhhheeccccccccccceEe-------------------cceeeeecccccceEEEeccCCc----eeeEeec
Confidence            999999998877666533222111000                   01223556667778888876633    3444554


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      +. .|+++..++++ .|++++.|.++.+.|+++.....++.     .....+.++|+| ++.|+++||.||.|+||++.+
T Consensus       341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccC
Confidence            44 89999999999 89999999999999999999988885     344589999999 999999999999999999999


Q ss_pred             CeEEE-e--cCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          461 CQVVD-Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       461 ~~~~~-~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw  497 (531)
                      +++.. +  ......|++++|+|.|.+|++++.++.+.+|
T Consensus       419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99874 2  2233369999999999999999999999999

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=9.7e-23  Score=182.68  Aligned_cols=251  Identities=20%  Similarity=0.245  Sum_probs=194.3

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I  308 (531)
                      .+.|.+.+..+...-.|+.||+++.|++|+|+.......    .+...+|.||.++|+.++|..  .|.+||+++.||.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            455777777777778899999999999999999986553    234568999999999999965  89999999999999


Q ss_pred             EEEEcccCcc--ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          309 RVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       309 ~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .||.-.+++-  ......+...+.++.+.+...+.+++.              ++.|+.+.+...+.-.. .........
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac--------------asSDG~vsvl~~~~~g~-w~t~ki~~a  147 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC--------------ASSDGKVSVLTYDSSGG-WTTSKIVFA  147 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEE--------------eeCCCcEEEEEEcCCCC-ccchhhhhc
Confidence            9999888753  344567777888899988887666544              34444444433322100 112344577


Q ss_pred             CCCCeeEEEEcCCC---------------eEEEEeCCCcEEEEECCCCeEE--EEe-ecCCceEEEEEeeCCC---CEEE
Q 009614          387 HSSEVLDLSWSKNG---------------FLLSSSADKTVRLWQVGIDRCL--RVF-SHNNYVTSVAFNPVDD---NYFI  445 (531)
Q Consensus       387 h~~~I~~l~~sp~~---------------~l~s~s~Dg~V~lwdl~~~~~l--~~~-~h~~~V~sv~fsp~d~---~~l~  445 (531)
                      |.-.|++++|.|..               .|++|+.|..|+||+...++.+  +++ .|.+.|..++|.|..+   .+||
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            99999999999851               4999999999999999886433  223 3999999999999532   4899


Q ss_pred             EEeCCCeEEEEeCCCC----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          446 SGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +++.||+|.||-.+..    +...+......++.+.|++.|+.|++++.|+.|.+|.-.
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999999999987732    122245567889999999999999999999999999654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.90  E-value=1.4e-22  Score=211.99  Aligned_cols=242  Identities=22%  Similarity=0.391  Sum_probs=206.2

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|.+.+.++++...+..+++|+.|.+++|||..++.       +...+.+|.+.|.++...  ..++++|+.|.+|++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV  315 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV  315 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence            66788888889998889999999999999999988544       456789999999999885  557889999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |++.++..+..+..+...+.++...                  ....++++.++.+.+|+...    .+.++.+.+|.+.
T Consensus       316 W~v~n~~~l~l~~~h~~~V~~v~~~------------------~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  316 WDVTNGACLNLLRGHTGPVNCVQLD------------------EPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGR  373 (537)
T ss_pred             EeccCcceEEEeccccccEEEEEec------------------CCEEEEEecCceEEEEEhhh----ceeeeeecCCcce
Confidence            9999999888887776666666553                  23346788889999999984    5679999999999


Q ss_pred             eeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec
Q 009614          391 VLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT  467 (531)
Q Consensus       391 I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~  467 (531)
                      |.++.+.+..++++|+.|++|++||+++. +|+.++. |...|..+.+   .+++|++++.|++|++||..+++++. +.
T Consensus       374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeec
Confidence            99998887569999999999999999999 9999987 7777777776   56899999999999999999999885 44


Q ss_pred             C-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          468 D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       468 ~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      . +...|+++++.  ...+++++.||.+++||++++++....
T Consensus       451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            4 45888888876  467899999999999999999988755

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.1e-23  Score=194.42  Aligned_cols=244  Identities=16%  Similarity=0.268  Sum_probs=195.3

Q ss_pred             cccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          228 LGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      .+.+.+|.+.|.+++=+|.. ..+|+|+.||.|+|||+....       +...+++|.+.|.+|++..  ..++++|.|+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK  129 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDK  129 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-------hhheeecccCceeeEEecc--cceEEecCCc
Confidence            45679999999999999988 789999999999999998443       3456899999999999986  6789999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      +|+.|.+... ...++...              ..+..++.     ........+....+-+|+...    ..|+..+.-
T Consensus       130 tvK~wk~~~~-p~~tilg~--------------s~~~gIdh-----~~~~~~FaTcGe~i~IWD~~R----~~Pv~smsw  185 (433)
T KOG0268|consen  130 TVKQWKIDGP-PLHTILGK--------------SVYLGIDH-----HRKNSVFATCGEQIDIWDEQR----DNPVSSMSW  185 (433)
T ss_pred             ceeeeeccCC-cceeeecc--------------cccccccc-----ccccccccccCceeeeccccc----CCccceeec
Confidence            9999987542 11111110              00111100     011112334455677888765    457888887


Q ss_pred             CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-E
Q 009614          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-V  463 (531)
Q Consensus       387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-~  463 (531)
                      ....|.++.|+|..  .|++|+.|+.|.|||++++.+++.....-.-+.|+|+| ..-.|++|+.|..++.||++..+ +
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP  264 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhccc
Confidence            88899999999977  88899999999999999999999888777788999999 89999999999999999999754 3


Q ss_pred             E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      + ...+|...|..|.|+|.|+-+++|+.|.+|+||.++.+.-.
T Consensus       265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR  307 (433)
T KOG0268|consen  265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR  307 (433)
T ss_pred             chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch
Confidence            3 47899999999999999999999999999999999877643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=3.6e-22  Score=193.59  Aligned_cols=251  Identities=18%  Similarity=0.236  Sum_probs=193.1

Q ss_pred             eeccccceeeeCCCCe-EEeeecCCeEEEEeCCCCccccc---ccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcE
Q 009614          234 IIDRHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTV  308 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~-lasgs~dg~I~vwd~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I  308 (531)
                      |.+.|+.+..-|+... +|+++..+.|.|||+.+......   .....-.+.+|++.-++|+|++. .-.|++|+.|++|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i  202 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI  202 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence            4455666677776654 56688899999999987654332   23344478999998899999994 3489999999999


Q ss_pred             EEEEcccCccc-------cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          309 RVWKVIEHERL-------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       309 ~iWd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      .+||+......       ..+..+...+.-+.|.+.+.               ....+.+.++.+.+|+.+..  ..++.
T Consensus       203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~---------------~lF~sv~dd~~L~iwD~R~~--~~~~~  265 (422)
T KOG0264|consen  203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE---------------DLFGSVGDDGKLMIWDTRSN--TSKPS  265 (422)
T ss_pred             EEEeccccccCCccccceEEeecCCcceehhhccccch---------------hhheeecCCCeEEEEEcCCC--CCCCc
Confidence            99999765431       12233333333333333332               23345678889999999984  67888


Q ss_pred             eEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      +...+|.+.|+|++|+|-+  .||+|+.|++|+|||+++. +++.++. |...|.+|.|+|.....||+++.|+.+.|||
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            8999999999999999977  9999999999999999964 4566664 9999999999998889999999999999999


Q ss_pred             CCCC-e--------------EEEecCCCCceEEEEEccCCCE-EEEEeCCCcEEEEeCCC
Q 009614          458 VRRC-Q--------------VVDYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       458 ~~~~-~--------------~~~~~~~~~~v~~v~~spdg~~-l~sgs~dg~I~iwd~~~  501 (531)
                      +..- +              +..-.+|...|..+.|+|+..+ |++.+.|+.++||.+..
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9751 1              1245688999999999997754 67788999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=4.8e-22  Score=210.86  Aligned_cols=242  Identities=24%  Similarity=0.347  Sum_probs=184.6

Q ss_pred             cccceeeeCCCCeEEeee--cCCeEEEEeCCCCcccccc-----cccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSS-----LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs--~dg~I~vwd~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+-++.++|+|..+|+|+  .|+.++||+...-..+...     ....-....|.+.|+|+.|+|||++||+|++|+.|.
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~   94 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM   94 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence            356789999999999999  8999999988743321111     112234678999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      ||..... .....          +...+                        ....+     ..    -+.+..+.+|..
T Consensus        95 iW~~~~~-~~~~~----------fgs~g------------------------~~~~v-----E~----wk~~~~l~~H~~  130 (942)
T KOG0973|consen   95 IWERAEI-GSGTV----------FGSTG------------------------GAKNV-----ES----WKVVSILRGHDS  130 (942)
T ss_pred             Eeeeccc-CCccc----------ccccc------------------------ccccc-----ce----eeEEEEEecCCC
Confidence            9997541 10000          00000                        00000     00    134677889999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-----
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----  462 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-----  462 (531)
                      .|.+++|+|++ +|++++.|++|.||+..+...+.++. |...|-.+.|.| -|+|||+-+.|++|+||++.+..     
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee
Confidence            99999999999 99999999999999999999999886 999999999999 99999999999999999965311     


Q ss_pred             ---------------------------------------E---------EEecCCCCceEEEEEccC-----CC------
Q 009614          463 ---------------------------------------V---------VDYTDIREIVSAVCYCPD-----GK------  483 (531)
Q Consensus       463 ---------------------------------------~---------~~~~~~~~~v~~v~~spd-----g~------  483 (531)
                                                             +         ..+.+|..++..+.|+|.     .+      
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~  289 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ  289 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence                                                   1         135689999999999981     11      


Q ss_pred             ------EEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          484 ------GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       484 ------~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                            .+|+|+.|++|-||.....+++..+       +....+.|..++|+|
T Consensus       290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi-------~~lf~~SI~DmsWsp  335 (942)
T KOG0973|consen  290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVI-------HNLFNKSIVDMSWSP  335 (942)
T ss_pred             CCcceEEEEEecCCccEEEEecCCCCchhhh-------hhhhcCceeeeeEcC
Confidence                  5788999999999999777665432       233456788888876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.6e-22  Score=194.20  Aligned_cols=219  Identities=22%  Similarity=0.329  Sum_probs=178.2

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      -.+.+.+++|+|...+=.+-...-++.||+......       .+++...+..|+++.|..||++||.|...|.|+|+|+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~-------~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV-------RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM   97 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhh-------hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence            346777899999877655544567899998774332       2234556788999999999999999999999999996


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+..                                                              .+..+++|+.+|..
T Consensus        98 k~r~--------------------------------------------------------------iLR~~~ah~apv~~  115 (487)
T KOG0310|consen   98 KSRV--------------------------------------------------------------ILRQLYAHQAPVHV  115 (487)
T ss_pred             ccHH--------------------------------------------------------------HHHHHhhccCceeE
Confidence            4422                                                              14557789999999


Q ss_pred             EEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-eEEEecCC
Q 009614          394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDI  469 (531)
Q Consensus       394 l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~~~~~~~~  469 (531)
                      +.|+|++  .|++|+.|+.+++||+.+......+ .|.++|.|.+|+|..+.++++|+.||+|++||++.. ..+....|
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh  195 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH  195 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence            9999987  8999999999999999998864344 499999999999988889999999999999999987 56667889


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      ..+|..+.+-|.|..|++++ ...|++||+.+|.....       ....|.|.||++.+.
T Consensus       196 g~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~-------~~~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT-------SMFNHNKTVTCLRLA  247 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh-------hhhcccceEEEEEee
Confidence            99999999999999999988 45799999995544321       233477899999885

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.5e-21  Score=180.99  Aligned_cols=232  Identities=20%  Similarity=0.304  Sum_probs=183.7

Q ss_pred             eEEeeecCCeEEEEeCCCCcccc-----cccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccccee
Q 009614          249 ELTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~-----~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~  323 (531)
                      .+++|+....|.=+++...+...     ..+...-.+.+|.++|++|+.+  +.++|+||.|-+|+|||+.+...+..+-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            46788888888877776554211     1222233578999999999995  8999999999999999999999988888


Q ss_pred             cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE
Q 009614          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (531)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l  402 (531)
                      .+...+.++.|.+....              ..++++..|+.+.+|+...|..    +..+++|.+.|+.|+++|.+ +-
T Consensus        81 ~HagsitaL~F~~~~S~--------------shLlS~sdDG~i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLA  142 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSK--------------SHLLSGSDDGHIIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLA  142 (362)
T ss_pred             ccccceEEEEecCCcch--------------hheeeecCCCcEEEEEcCCeEE----eeeecccccccceeEecCCCceE
Confidence            88888887777655421              2557889999999999999854    78899999999999999999 77


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeecCC----------------------------------------ceEEEEEeeCCCC
Q 009614          403 LSSSADKTVRLWQVGIDRCLRVFSHNN----------------------------------------YVTSVAFNPVDDN  442 (531)
Q Consensus       403 ~s~s~Dg~V~lwdl~~~~~l~~~~h~~----------------------------------------~V~sv~fsp~d~~  442 (531)
                      ++.+.|+.+++||+-.|+.-....-..                                        .+.|+.|-  ++.
T Consensus       143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~  220 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGS  220 (362)
T ss_pred             EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCc
Confidence            888999999999997665433332222                                        23333332  677


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEE--ccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~--spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      ++++|..|+.|.+||.....+. .+.+|...|-.+.+  .|++.+|++++.||.|++||++..
T Consensus       221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            8889999999999999987666 48899999998884  467899999999999999999876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.89  E-value=5.7e-22  Score=187.88  Aligned_cols=258  Identities=19%  Similarity=0.264  Sum_probs=190.1

Q ss_pred             cceeeeccccceeeeCCC---CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          230 AMARIIDRHGSATLKPGD---HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg---~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      .+.+|.+++.++++.-..   ..+++++.|.++++|.++...........   .+||..+|-+|...++|..+++|+.|.
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~GHk~~V~sVsv~~sgtr~~SgS~D~  215 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CRGHKRSVDSVSVDSSGTRFCSGSWDT  215 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hcccccceeEEEecCCCCeEEeecccc
Confidence            456666677655443333   35999999999999999977765554333   349999999999999999999999999


Q ss_pred             cEEEEEcccCc--cc----------cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614          307 TVRVWKVIEHE--RL----------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       307 ~I~iWd~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                      +|+||+..+..  .+          ............+.....+...+..+.+..    ....++.+.|.++..|+....
T Consensus       216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d----~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD----ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC----CCceEeecccceEEEEEeecc
Confidence            99999932111  00          001111111222333344444444443333    234467788899999998764


Q ss_pred             cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe---EEEEe-ecCCceEEEEEeeCCCCEEEEEeC
Q 009614          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~---~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      ..    ...+. ....++++.++|.. +|++|+.|..|++||.+++.   ....| .|++.|.++.|+|.+...|++|+.
T Consensus       292 ~~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~  366 (423)
T KOG0313|consen  292 GL----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY  366 (423)
T ss_pred             cc----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence            43    22222 35679999999987 99999999999999998753   22333 599999999999988899999999


Q ss_pred             CCeEEEEeCCCCe--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          450 DGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       450 Dg~I~Iwd~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      |+++++||+++.+  +..+.+|.+.|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus       367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9999999999876  45799999999999998 56689999999999999643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=3e-22  Score=212.37  Aligned_cols=261  Identities=19%  Similarity=0.247  Sum_probs=205.8

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCC-----------CcccccccccceEEcccCCCEEEEEEccC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSLD  295 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~-----------~~~~~~~~~~~~~l~~H~~~I~~l~fspd  295 (531)
                      .+..+..|...++|+.|+|||++||+|+.|+.|.||....           +......+.....+.+|...|..++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3445666788899999999999999999999999999883           12223344456678999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc
Q 009614          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (531)
Q Consensus       296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (531)
                      +.+||+++.|++|.|||..+.+.+..+..|...+..+.|.|...                +..+.+.|..+.+|....|.
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk----------------y~ASqsdDrtikvwrt~dw~  204 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK----------------YFASQSDDRTLKVWRTSDWG  204 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC----------------eeeeecCCceEEEEEcccce
Confidence            99999999999999999999999999999998888887766542                33566788899999877766


Q ss_pred             ccCcceeEee--cCCCCeeEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeC--------
Q 009614          376 LLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV--------  439 (531)
Q Consensus       376 ~~~~~~~~~~--~h~~~I~~l~~sp~~-~l~s~s----~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~--------  439 (531)
                      +.......+.  .-...+..+.|+|+| +|++..    .-.++.|.+-.+-+.-..| +|..++.++.|+|.        
T Consensus       205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n  284 (942)
T KOG0973|consen  205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN  284 (942)
T ss_pred             eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence            5432222222  123457889999999 887754    2345888887776654444 69999999999983        


Q ss_pred             ----CCC----EEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          440 ----DDN----YFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       440 ----d~~----~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                          ..+    .+|+|+.|++|-||.....+++-  ..-....|..++|+|||..|.+++.||+|.++.++..+
T Consensus       285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                121    68899999999999998877763  23346689999999999999999999999999997644

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.8e-23  Score=193.94  Aligned_cols=174  Identities=26%  Similarity=0.472  Sum_probs=155.7

Q ss_pred             ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (531)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (531)
                      +.++.+-|..|+|||+||++|+.||-|-+||..+|+..+.++-..                                   
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------------------------  255 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------------------------  255 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence            556778899999999999999999999999999988655443211                                   


Q ss_pred             CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEee
Q 009614          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP  438 (531)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp  438 (531)
                                         ...+--+..+|.|+.|+.+. .|++|+.||.|++|.+++|+|++.|.  |...|+|+.|+.
T Consensus       256 -------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr  316 (508)
T KOG0275|consen  256 -------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR  316 (508)
T ss_pred             -------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence                               12233467899999999998 99999999999999999999999996  999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          439 VDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       439 ~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                       |+..+++++.|.++||.-+.++++++ +.+|..-|+.+.|++||..+++++.||+|++|+.++.+++.+++.
T Consensus       317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~  388 (508)
T KOG0275|consen  317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP  388 (508)
T ss_pred             -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence             89999999999999999999999985 899999999999999999999999999999999999999887763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.3e-21  Score=178.88  Aligned_cols=226  Identities=16%  Similarity=0.248  Sum_probs=179.8

Q ss_pred             eccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          235 IDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       235 ~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      .+.+.+++|+| ...++++|+.|++||+|++......     ..+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-----~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-----VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcc-----cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            37788899999 5566679999999999999864221     12345679999999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++                                                               +..+..|.++|..
T Consensus       102 ~S~Q---------------------------------------------------------------~~~v~~Hd~pvkt  118 (347)
T KOG0647|consen  102 ASGQ---------------------------------------------------------------VSQVAAHDAPVKT  118 (347)
T ss_pred             cCCC---------------------------------------------------------------eeeeeecccceeE
Confidence            8875                                                               3345669999999


Q ss_pred             EEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE---Eec
Q 009614          394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYT  467 (531)
Q Consensus       394 l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~---~~~  467 (531)
                      +.|-+..   .|++|+.|++|+.||.+...++.++..+..+.++..   -..+++++..+..|.+|+++++...   ...
T Consensus       119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~S  195 (347)
T KOG0647|consen  119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHIAVYNLENPPTEFKRIES  195 (347)
T ss_pred             EEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence            9998765   899999999999999999999999999999999876   3468888999999999999876543   133


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc--ccC-CCceeeeEEEeeC
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK--KKL-PGKRITGFQVVKI  531 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~--kk~-~~~~It~l~f~p~  531 (531)
                      ..+-.+.+|+..+|....+.|+..|.+.|..+..+.....+.+.-...  ... ..-.|.+|+|.|.
T Consensus       196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~  262 (347)
T KOG0647|consen  196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV  262 (347)
T ss_pred             cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence            355678999999999999999999999999998875444333221111  011 1346788899874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4.3e-22  Score=200.01  Aligned_cols=241  Identities=20%  Similarity=0.305  Sum_probs=203.1

Q ss_pred             CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC--ccccce
Q 009614          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDGF  322 (531)
Q Consensus       245 pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~--~~~~~~  322 (531)
                      |++++|.+|++||.|++|+......+.+..+ ...++.|...|+.+....+|+.|++++.|-+|++|+...+  -++..+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence            5677899999999999999986665544332 3468899999999999999999999999999999999877  577788


Q ss_pred             ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc------cCcceeEee-cCCCCeeEEE
Q 009614          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL------LEKPLHEFQ-GHSSEVLDLS  395 (531)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~h~~~I~~l~  395 (531)
                      ..|...+.|+.......               ....+++-+..+.+|+......      ...+...+. |+...|.+++
T Consensus       114 r~H~DYVkcla~~ak~~---------------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNN---------------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             hcccchheeeeecccCc---------------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            88888888887742221               2235677888899999875411      123344444 8999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCc
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREI  472 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~  472 (531)
                      .++.| .+++|+..+.+++||.++.+.+..+ +|...|.++..++ ||..+++++.||+|++||+...+++ .+..|...
T Consensus       179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence            99999 9999999999999999998777666 5999999999999 9999999999999999999999988 58889999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      |+++..+|+-.++++|+.||.|..=|+++.
T Consensus       258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999999999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.88  E-value=3.9e-22  Score=179.26  Aligned_cols=261  Identities=16%  Similarity=0.226  Sum_probs=213.6

Q ss_pred             eeccccceeee---CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          234 IIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       234 ~~~~~~s~~fs---pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      |..+|..++|+   |+|-+|+++++|+.-.+.+-.++..       .-++.||+++|+...++.+...-|+++.|-+-+|
T Consensus        13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------igtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen   13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------IGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------EEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            44556666655   6999999999999988887765443       2468999999999999999989999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||..+|..+..+... .-+..+.|..+.                ..+++++.+..+.+++.+..   ..|..++.+|++.
T Consensus        86 w~a~tgdelhsf~hk-hivk~~af~~ds----------------~~lltgg~ekllrvfdln~p---~App~E~~ghtg~  145 (334)
T KOG0278|consen   86 WDAVTGDELHSFEHK-HIVKAVAFSQDS----------------NYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGG  145 (334)
T ss_pred             hhhhhhhhhhhhhhh-heeeeEEecccc----------------hhhhccchHHHhhhhhccCC---CCCchhhcCCCCc
Confidence            999999887776432 223333333322                23456666666666665443   3567788999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~  469 (531)
                      |..+.|.... .+++++.|++||+||.+++..++.+..+.+|+++.+++ ++.+|.++ ..+.|..||..+..+++....
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEeccccccceeeccC
Confidence            9999999877 88899999999999999999999999999999999999 88877664 567899999999999988888


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ...|.+..++|+...+++|+.|+.++.||..++..+..+       .|.+..+|..+.|+|
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-------nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------NKGHFGPVHCVRFSP  277 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-------ccCCCCceEEEEECC
Confidence            889999999999999999999999999999999887652       345678999999998

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.88  E-value=2.9e-22  Score=195.26  Aligned_cols=244  Identities=16%  Similarity=0.215  Sum_probs=195.9

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGED  305 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~D  305 (531)
                      .+.++.+|...|..++|+++|..+++++.|+.|++||+.++....       .+. -...++|++|+|++ +.+++|+.|
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-------~f~-~~~~~~cvkf~pd~~n~fl~G~sd  321 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-------RFH-LDKVPTCVKFHPDNQNIFLVGGSD  321 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-------EEe-cCCCceeeecCCCCCcEEEEecCC
Confidence            345678888899999999999999999999999999999766432       121 13468999999988 789999999


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.|+.||+++++.++++..+...+..+.|.....                ..++.+.+..+++|+.+.....   .....
T Consensus       322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~----------------rFissSDdks~riWe~~~~v~i---k~i~~  382 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR----------------RFISSSDDKSVRIWENRIPVPI---KNIAD  382 (503)
T ss_pred             CcEEEEeccchHHHHHHHhhhhheeeeEEccCCc----------------eEeeeccCccEEEEEcCCCccc---hhhcc
Confidence            9999999999999999988888887777766553                2355677778888887653321   11122


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE---EEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL---RVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l---~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      .+.-...++..+|++ .++.-+.|..|.++.+...-.+   +.|.   -.++-..+.|+| |+.+|++|..||.+.+||.
T Consensus       383 ~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  383 PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeec
Confidence            234456789999999 9999999999999987543222   2232   357778899999 9999999999999999999


Q ss_pred             CCCeEE-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEe
Q 009614          459 RRCQVV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       459 ~~~~~~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd  498 (531)
                      ++.+++ .+..|..+++.+.|+|. ...+|+++.||.|++|+
T Consensus       462 kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  462 KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999888 58889999999999995 46799999999999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.2e-20  Score=173.89  Aligned_cols=260  Identities=12%  Similarity=0.128  Sum_probs=204.4

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC--CCcEEEE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTVRVW  311 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~iW  311 (531)
                      ..+++.++.|+++|.++++++.|..|++||...+..       .+++..++-.|..++|......++.++.  |.+||..
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence            346788999999999999999999999999985543       3456667778999999887777777766  8999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      ++.+++.++-+..|...+..+...|...                ..++++.|..+.+|+.++.+-    ...+  +...-
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~sP~~d----------------~FlS~S~D~tvrLWDlR~~~c----qg~l--~~~~~  143 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVSPKDD----------------TFLSSSLDKTVRLWDLRVKKC----QGLL--NLSGR  143 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEecCCCC----------------eEEecccCCeEEeeEecCCCC----ceEE--ecCCC
Confidence            9999999999999888887777766542                236778889999999886432    1212  33344


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCC--CeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          392 LDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ...++.|.| ++|++.....|+|||++.  ..+..+|.    .....+.|.|+| +|++|+.+...+.+++.|.-+|.+.
T Consensus       144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~  222 (311)
T KOG1446|consen  144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVK  222 (311)
T ss_pred             cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEe
Confidence            567899999 777777777999999985  34555554    456789999999 9999999999999999999999877


Q ss_pred             E-ecCCCC---ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          465 D-YTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       465 ~-~~~~~~---~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      . +..+..   .....+|+||++++++|+.||+|++|++++++.+..++..       ....+..++|+|
T Consensus       223 ~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~~~~~~fnP  285 (311)
T KOG1446|consen  223 STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGPVSCVRFNP  285 (311)
T ss_pred             eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCCccccccCC
Confidence            3 333332   2367899999999999999999999999999998866532       234556666776

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.6e-20  Score=166.45  Aligned_cols=250  Identities=18%  Similarity=0.258  Sum_probs=197.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc----CCCEEEEEeC-C
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-D  305 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-D  305 (531)
                      -..|+..+.|.+|+|+|+++|+|+.|.+|++..++........  ..-++.-|.+.|..++|-.    .|.+|++++. |
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            3446778889999999999999999999999987754433322  2235778999999999954    4568888764 8


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ..|.+-|..+|+....+..+...+..++.            +     ......+++.+.++..|+.++..-....-..+.
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghilalys------------w-----n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~  225 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILALYS------------W-----NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH  225 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEEEEE------------e-----cCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence            88999899888877777666655433321            1     123346788999999999887443222222222


Q ss_pred             c---CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          386 G---HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       386 ~---h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      +   ....|..+++.|.| +|++|..|....+||++.++.++.|. |...|.|+.|+| ...|+++|+.|.+|++-|+..
T Consensus       226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeeccc
Confidence            2   23679999999999 99999999999999999999999985 999999999999 899999999999999999875


Q ss_pred             C-----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          461 C-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       461 ~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .     ..+....|.+.+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            3     234567889999999999999999999999999999764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=6.6e-21  Score=192.81  Aligned_cols=252  Identities=20%  Similarity=0.269  Sum_probs=201.5

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      +.|+ ..+.+|+|. ...|++|+.......       +...-+...|+++.|+++|++||+|..+|.|.|||+.+.+.+.
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~-------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVT-------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceE-------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence            5677 444566663 467999998865521       1122347899999999999999999999999999999999888


Q ss_pred             ceec-CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          321 GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       321 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                      .+.. +...+.++.|..                  .....++.++.+..++.+......   ..+.+|...|..++|+++
T Consensus       254 ~~~~~h~~rvg~laW~~------------------~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWNS------------------SVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             cccCCcCceeEEEeccC------------------ceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCC
Confidence            8877 666666666641                  223567778888888877654332   248899999999999999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe--CCCeEEEEeCCCCeEEEecCCCCceEE
Q 009614          400 G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDIREIVSA  475 (531)
Q Consensus       400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs--~Dg~I~Iwd~~~~~~~~~~~~~~~v~~  475 (531)
                      + +|++|+.|+.+.|||.....++..+ .|...|.+++|+|....+||+|+  .|++|++||..+++.+........|..
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs  392 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS  392 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence            9 9999999999999999777666666 59999999999998899999965  699999999999999999999999999


Q ss_pred             EEEccCCCEEEE--EeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          476 VCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       476 v~~spdg~~l~s--gs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |.|++..+-|++  |..++.|.||+..+.+++...        ..|..+|..++.+|
T Consensus       393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--------~gH~~RVl~la~SP  441 (484)
T KOG0305|consen  393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--------LGHTSRVLYLALSP  441 (484)
T ss_pred             EEEcCCCCEEEEecCCCCCcEEEEeccccceeeee--------cCCcceeEEEEECC
Confidence            999999877776  445778999999986655533        23456777777776

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.9e-23  Score=207.06  Aligned_cols=224  Identities=19%  Similarity=0.406  Sum_probs=194.8

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      +...+|...++++.....++.+++|+.+..+-+|.+.+.....+       +.+|.++|.+|.|+++..+|++|+.+|+|
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S-------~~~hespIeSl~f~~~E~Llaagsasgti   94 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS-------LTGHESPIESLTFDTSERLLAAGSASGTI   94 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe-------eeccCCcceeeecCcchhhhcccccCCce
Confidence            34556777777777777889999999999999999886655443       88999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+.+++.                                                              ++++.+|.
T Consensus        95 K~wDleeAk~--------------------------------------------------------------vrtLtgh~  112 (825)
T KOG0267|consen   95 KVWDLEEAKI--------------------------------------------------------------VRTLTGHL  112 (825)
T ss_pred             eeeehhhhhh--------------------------------------------------------------hhhhhccc
Confidence            9999976543                                                              45678899


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-  465 (531)
                      ..+..+.|+|-+ +.++|+.|..+++||++...|.+.+. |...|.++.|+| +|.++++|+.|..++|||+..+++.. 
T Consensus       113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~e  191 (825)
T KOG0267|consen  113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKE  191 (825)
T ss_pred             cCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccc
Confidence            999999999999 88999999999999999989999987 889999999999 99999999999999999999999985 


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +..|...+.++.|+|..-+++.|+.|+++++||+++-+++....-.        ...|.++.|+|
T Consensus       192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~~~~fn~  248 (825)
T KOG0267|consen  192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVRSLAFNP  248 (825)
T ss_pred             cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCceeeeecC
Confidence            7779999999999999999999999999999999987777544322        34556666665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=5e-21  Score=185.63  Aligned_cols=228  Identities=18%  Similarity=0.281  Sum_probs=184.9

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .|...+-++++++||++||+|+.|..|.||+..+..       ..+.+.+|.+.|.+++|-.....|++++.|+.|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence            566677789999999999999999999999998543       4456899999999999998888999999999999999


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      +.....+.++..++..+..+......                .....++.|.++.+|..     .......+.+|.+.+-
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~re----------------R~vtVGgrDrT~rlwKi-----~eesqlifrg~~~sid  331 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRE----------------RCVTVGGRDRTVRLWKI-----PEESQLIFRGGEGSID  331 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhccc----------------ceEEeccccceeEEEec-----cccceeeeeCCCCCee
Confidence            99998888887777655443322111                11123446777777765     3344567889999999


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee--c-----------CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--H-----------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       393 ~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~--h-----------~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      |++|..+.++++|+.+|.|.+|++.+.+++.+..  |           +..|++++..| ..+++++|+.+|.|++|-+.
T Consensus       332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence            9999988899999999999999999999887764  2           23799999999 99999999999999999998


Q ss_pred             CC----eEEEecCCCCceEEEEEccCCCEEEEEe
Q 009614          460 RC----QVVDYTDIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       460 ~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs  489 (531)
                      .+    .++.-....+-|++++|+++|+.|++|.
T Consensus       411 ~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  411 DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence            87    3344444678899999999999777764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.8e-21  Score=170.78  Aligned_cols=225  Identities=18%  Similarity=0.323  Sum_probs=172.5

Q ss_pred             cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccC-ccccceecCCCCCeeE
Q 009614          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEH-ERLDGFDVQDTDPSCL  332 (531)
Q Consensus       255 ~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~  332 (531)
                      ..|++.|.++...+.    +...+.+ .-.+.+..|+|+++ .+.+++++.||+++|||+... ..+..++.+...+..+
T Consensus        36 G~G~L~ile~~~~~g----i~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Sv  110 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKG----IQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSV  110 (311)
T ss_pred             cCceEEEEecCCCCC----eEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEe
Confidence            368999998863221    1111222 23578999999994 568899999999999996432 2344444444444333


Q ss_pred             EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCc
Q 009614          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKT  410 (531)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~  410 (531)
                      .+             ...  .....+..+-|+++.+|++..    .+.+.++.+|..-|...+|+|.-  .+++++.|++
T Consensus       111 dw-------------n~~--~r~~~ltsSWD~TiKLW~~~r----~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen  111 DW-------------NTV--RRRIFLTSSWDGTIKLWDPNR----PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             cc-------------ccc--cceeEEeeccCCceEeecCCC----CcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            33             222  223335558899999999876    44588899999999999999975  9999999999


Q ss_pred             EEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEEEccCC-CEEE
Q 009614          411 VRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDG-KGGI  486 (531)
Q Consensus       411 V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~~spdg-~~l~  486 (531)
                      +++||++. ++.+....|...+.|+.|+..+.+.+++|+.|+.|++||+++-+..  .+.+|.-.|..|.|+|.. ..|+
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence            99999985 5555544599999999999989999999999999999999986532  588999999999999964 6889


Q ss_pred             EEeCCCcEEEEeCCCCe
Q 009614          487 VGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       487 sgs~dg~I~iwd~~~~~  503 (531)
                      +++.|-+++|||...+.
T Consensus       252 SasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQD  268 (311)
T ss_pred             hccccceEEecccccch
Confidence            99999999999987443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=1.1e-19  Score=177.89  Aligned_cols=285  Identities=20%  Similarity=0.238  Sum_probs=205.0

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc-CCCEEEEEEccCCCEEEEEeCCCc
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      +.+.+..+.+....|+|.+..++.....+.+..|+.........    ...+.++ +.-|.||+|.++|+ ++||..+|.
T Consensus       194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G~  268 (626)
T KOG2106|consen  194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGGN  268 (626)
T ss_pred             CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCce
Confidence            45666777788889999998888777789999998876543211    1123332 36799999999996 789999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecC-------Ccceeeeecccccccccc---------c-cccCCCceEEEeC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINH-------LSQLIPIDVDKEKIDKTK---------S-LRKSSDLTCVVLP  370 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~  370 (531)
                      |.||+..+.+..+....+...+.++.+..+.       ...++.++.+-.+.....         . ..+..+  +++-.
T Consensus       269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGT  346 (626)
T KOG2106|consen  269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGT  346 (626)
T ss_pred             EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEEee
Confidence            9999998888777766777777776654332       122222221111111000         0 011111  22222


Q ss_pred             Cccccc----cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          371 PKVFRL----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       371 ~~~~~~----~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                      .+.+-+    .........+|......++.+|+. .+++++.|+.+++|+  ..+++.+.....++.|+.|+| .+ .+|
T Consensus       347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va  422 (626)
T KOG2106|consen  347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA  422 (626)
T ss_pred             ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence            221111    123344567899999999999998 999999999999999  666666666788999999999 77 999


Q ss_pred             EEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614          446 SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG  525 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~  525 (531)
                      .|...|...+.|..+...+......++++.+.|+|+|.+||+|+.|+.|+||.+..+......-      .|.++..||.
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~------~k~~gs~ith  496 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV------GKCSGSPITH  496 (626)
T ss_pred             EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe------eeecCceeEE
Confidence            9999999999999998888766669999999999999999999999999999997654433221      2334489999


Q ss_pred             EEEee
Q 009614          526 FQVVK  530 (531)
Q Consensus       526 l~f~p  530 (531)
                      +.|++
T Consensus       497 LDwS~  501 (626)
T KOG2106|consen  497 LDWSS  501 (626)
T ss_pred             eeecC
Confidence            99875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.4e-21  Score=199.86  Aligned_cols=237  Identities=18%  Similarity=0.248  Sum_probs=190.0

Q ss_pred             eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcc
Q 009614          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      +.|.. +.++||+++..|.|.+||+......    .....|..|+..|+++.|++ ...+|+||+.||+|++||++..+.
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRN----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccc----hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            44443 4578999999999999999863211    12235788999999999998 567899999999999999999988


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      ...+......+.-+.|.+.....+               .+....+.+..|+.+..+   ++...+..|.++|.|+.|+|
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F---------------~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhP  230 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKF---------------ASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHP  230 (839)
T ss_pred             cccccccchhhhceeeccCCCceE---------------EEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecC
Confidence            888877777777777777664333               455667788899988765   45677889999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCe--EEEEeecCCceEEEEEeeCCCCEEEEEeC--CCeEEEEeCCCCeEE--EecCCCC
Q 009614          399 NG-FLLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQVV--DYTDIRE  471 (531)
Q Consensus       399 ~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~h~~~V~sv~fsp~d~~~l~sgs~--Dg~I~Iwd~~~~~~~--~~~~~~~  471 (531)
                      ++ +||||+.|++|+|||+.+.+  .+.++....+|.+|.|-|.....|++++.  |-.|+|||++..-+-  .+..|..
T Consensus       231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            88 99999999999999998654  45556677899999999966677888764  778999999986543  5888999


Q ss_pred             ceEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 009614          472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       472 ~v~~v~~sp-dg~~l~sgs~dg~I~iwd~  499 (531)
                      .++.++|.. |-..|.+++.||+|..-.+
T Consensus       311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  311 SVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             cccceeccCCCceeeEeecCccHHHHhhh
Confidence            999999976 5567889999998754433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.86  E-value=3.4e-20  Score=178.50  Aligned_cols=244  Identities=18%  Similarity=0.254  Sum_probs=199.8

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      +..+.+|..++..+.++|+...+++++.|..|+||........       ..+..|.++|+.+..+|.|.||++++.||+
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~  326 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-------TSSRPHEEPVTGLSLHPTGEYLLSASNDGT  326 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-------cccccccccceeeeeccCCcEEEEecCCce
Confidence            3456777778888999999999999999999999998855432       346789999999999999999999999999


Q ss_pred             EEEEEcccCccccceecCCCC--CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ....|+.++..+.........  ..+..|.++.                .....+..++.+.+|+.+...    .+..|.
T Consensus       327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----------------Lifgtgt~d~~vkiwdlks~~----~~a~Fp  386 (506)
T KOG0289|consen  327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----------------LIFGTGTPDGVVKIWDLKSQT----NVAKFP  386 (506)
T ss_pred             EEEEEccCCcEEEEEeeccccceeEEeeEcCCc----------------eEEeccCCCceEEEEEcCCcc----ccccCC
Confidence            999999999877665443222  2333333322                233567888999999987643    477899


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-  461 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-  461 (531)
                      +|.++|..|+|+.+| +|++++.|+.|++||++..+..+++.  ....|.++.|.+ .|.+|+.++.|=+|++++-.+. 
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEEEEeccccc
Confidence            999999999999999 99999999999999999998888886  334699999999 9999999988877777775543 


Q ss_pred             -eEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          462 -QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       462 -~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                       +.+ .+..|.+..+.+.|..+.+++++++.|..+++|.+
T Consensus       466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence             333 57778889999999999999999999999998864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.86  E-value=3.7e-20  Score=168.22  Aligned_cols=182  Identities=23%  Similarity=0.398  Sum_probs=158.5

Q ss_pred             EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      .++||..+|+-|+++.+|.+|.+|+.|.++.+|--.+|+.                                        
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----------------------------------------   44 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----------------------------------------   44 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----------------------------------------
Confidence            3789999999999999999999999999999998766553                                        


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEe
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN  437 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fs  437 (531)
                                            +-++.||++.|+|+....+. ++++|+.|.+++|||+.+|+++..+..+.+|..+.|+
T Consensus        45 ----------------------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~  102 (327)
T KOG0643|consen   45 ----------------------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS  102 (327)
T ss_pred             ----------------------eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence                                  56678999999999999888 9999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEEeCC-----CeEEEEeCCC-------Ce-EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          438 PVDDNYFISGSID-----GKVRIWEVRR-------CQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       438 p~d~~~l~sgs~D-----g~I~Iwd~~~-------~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      + ++++++....+     +.|.++|++.       .. .+.+.-+...++.+-|.|-+++|++|..||.|.+||+++|+.
T Consensus       103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~  181 (327)
T KOG0643|consen  103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE  181 (327)
T ss_pred             c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence            9 88888776543     5799999983       33 445667778999999999999999999999999999999865


Q ss_pred             EEEeeeeecccccCCCceeeeEEEee
Q 009614          505 YQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       505 ~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +-+       ..+.|...|+.+||+|
T Consensus       182 ~v~-------s~~~h~~~Ind~q~s~  200 (327)
T KOG0643|consen  182 LVD-------SDEEHSSKINDLQFSR  200 (327)
T ss_pred             eee-------chhhhccccccccccC
Confidence            432       2345667999999986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=8e-21  Score=179.93  Aligned_cols=207  Identities=19%  Similarity=0.313  Sum_probs=161.4

Q ss_pred             eccccceeeeC--CCCeEEeeecCCeEEEEeCCCCcccc---------cccccceEEcccCCCEEEEEEcc-CCCEEEEE
Q 009614          235 IDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSL-DGQYLASG  302 (531)
Q Consensus       235 ~~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~---------~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasg  302 (531)
                      ++.++-+..++  +..+.|+-+..|+|+||++...-..+         +......++.+|.+.=++|+||| ....|+||
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            33344333333  34455667789999999987543221         23344557889999999999999 22258889


Q ss_pred             eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       303 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      ..-+.|++|...++.-..                                                        .   ..
T Consensus       231 Dc~~~I~lw~~~~g~W~v--------------------------------------------------------d---~~  251 (440)
T KOG0302|consen  231 DCVKGIHLWEPSTGSWKV--------------------------------------------------------D---QR  251 (440)
T ss_pred             ccccceEeeeeccCceee--------------------------------------------------------c---Cc
Confidence            888999999987754210                                                        0   12


Q ss_pred             EeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC---eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~---~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      .+.+|+..|-+|+|+|..  .|++|+-||+|+|||++.+   .++.+-.|+..|+-|.|+. +..+||+|+.||+++|||
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwD  330 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWD  330 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEE
Confidence            356799999999999975  9999999999999999988   5566656999999999998 777999999999999999


Q ss_pred             CCCCe---EE-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 009614          458 VRRCQ---VV-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       458 ~~~~~---~~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~  501 (531)
                      ++..+   ++ .+..|..+|++|.|+|. ...|++++.|..|.|||+.-
T Consensus       331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99743   33 68899999999999994 46788899999999999863

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=5e-20  Score=187.90  Aligned_cols=252  Identities=17%  Similarity=0.229  Sum_probs=207.5

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|+..|.+++++.+...+++|+ .+.|+||+..+.       .+.+++..  +.+.+..|.|.++++++|...|.+.+
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-------kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-------KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-------ceeEEecc--ccEEEEEecCCCceEEEeccCCceEE
Confidence            556777788899999988888885 578999998843       33344433  48999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc-Cccee-------
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLH-------  382 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------  382 (531)
                      +|+.....+..++.|...+..+...++....                ++++.|..+.+|+.....-. +...+       
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~----------------vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGF----------------VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT  502 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCce----------------EEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence            9999999999999888888888877766443                56677888888876543221 10000       


Q ss_pred             EeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE-EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l-~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ..-.-...|.|+.++|+| +|+.+=-|.+|++|-+.+-+.. ..++|.-||.||..+| |++++++||.|.+|+||-+.-
T Consensus       503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence            111235689999999999 9999999999999999987764 4457999999999999 999999999999999999999


Q ss_pred             CeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       461 ~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      |.+.+ +.+|.+.|.++.|.|+...+.+++.|+.|+-||-..-+.++...
T Consensus       582 GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  582 GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence            99985 89999999999999999999999999999999988777776554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.86  E-value=4.7e-21  Score=177.13  Aligned_cols=207  Identities=19%  Similarity=0.373  Sum_probs=170.7

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ++++.-|.+.|+.+.|+|....|++|+.|++|+++|+.+..... .+.   .+ ....+|.++.|+|.|.+|+.|.+-.+
T Consensus       165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr-A~K---~~-qd~~~vrsiSfHPsGefllvgTdHp~  239 (430)
T KOG0640|consen  165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR-AFK---VF-QDTEPVRSISFHPSGEFLLVGTDHPT  239 (430)
T ss_pred             EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH-HHH---Hh-hccceeeeEeecCCCceEEEecCCCc
Confidence            44667788999999999999999999999999999998644321 111   12 23568999999999999999999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      +++||+.+-++.....                                                           .-..|
T Consensus       240 ~rlYdv~T~Qcfvsan-----------------------------------------------------------Pd~qh  260 (430)
T KOG0640|consen  240 LRLYDVNTYQCFVSAN-----------------------------------------------------------PDDQH  260 (430)
T ss_pred             eeEEeccceeEeeecC-----------------------------------------------------------ccccc
Confidence            9999998876432110                                                           12458


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--c-CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h-~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      ++.|+++.+++.+ +.++++.||.|+|||--+++|+.++.  | ...|.+..|.. +++|+++.+.|..|++|.+.++++
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCce
Confidence            9999999999999 99999999999999999999999996  5 46788999998 999999999999999999987663


Q ss_pred             EE--------------------------------------------------ecCCCCceEEEEEccCCCEEEEEeCCCc
Q 009614          464 VD--------------------------------------------------YTDIREIVSAVCYCPDGKGGIVGTMTGN  493 (531)
Q Consensus       464 ~~--------------------------------------------------~~~~~~~v~~v~~spdg~~l~sgs~dg~  493 (531)
                      +.                                                  ..+|++.+..+.-+|.+..+++++.|-.
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence            31                                                  1346677888888899999999999999


Q ss_pred             EEEEeC
Q 009614          494 CRFYDI  499 (531)
Q Consensus       494 I~iwd~  499 (531)
                      +++|--
T Consensus       420 aRFWyr  425 (430)
T KOG0640|consen  420 ARFWYR  425 (430)
T ss_pred             eeeeee
Confidence            999953

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=7.9e-20  Score=169.14  Aligned_cols=255  Identities=18%  Similarity=0.246  Sum_probs=183.1

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I  308 (531)
                      .+.|.+.+.++.|.+.|+.+|+|+.|++|+|||..+...   +..+....+.|.++|+.|.|.+  -|+.+|+++.|+++
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            345778899999999999999999999999999754332   4556667899999999999965  69999999999999


Q ss_pred             EEEEcccCc---------cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc------c
Q 009614          309 RVWKVIEHE---------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK------V  373 (531)
Q Consensus       309 ~iWd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  373 (531)
                      .||.-....         ...++......+..+.|.+.+.+              ....+.+.++.+.+|...      .
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG--------------LklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG--------------LKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc--------------eEEEEeccCcEEEEEecCCcccccc
Confidence            999853111         11122222333444444444433              333556777788777542      2


Q ss_pred             ccccCcc---eeEeecCCCCeeEEEEcCCC----eEEEEeCC-----CcEEEEECCCC--eEEEE--e-ecCCceEEEEE
Q 009614          374 FRLLEKP---LHEFQGHSSEVLDLSWSKNG----FLLSSSAD-----KTVRLWQVGID--RCLRV--F-SHNNYVTSVAF  436 (531)
Q Consensus       374 ~~~~~~~---~~~~~~h~~~I~~l~~sp~~----~l~s~s~D-----g~V~lwdl~~~--~~l~~--~-~h~~~V~sv~f  436 (531)
                      |.+....   +.....+.....|+.|+|..    +|+.|+.+     +.+.||....+  +.++.  + .|..+|+.|+|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence            3222111   11222466788999999865    77777766     47888876543  33322  2 39999999999


Q ss_pred             eeCCC---CEEEEEeCCCeEEEEeCCCCe--------------------EE-EecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          437 NPVDD---NYFISGSIDGKVRIWEVRRCQ--------------------VV-DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       437 sp~d~---~~l~sgs~Dg~I~Iwd~~~~~--------------------~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      .|.-|   .+||+++.|| |+||.+....                    .+ .+.+|...|..+.|.-.|..|++.+.||
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG  310 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG  310 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence            99544   4789999999 9999987311                    12 3678999999999999999999999999


Q ss_pred             cEEEEeCCCCe
Q 009614          493 NCRFYDIKDNQ  503 (531)
Q Consensus       493 ~I~iwd~~~~~  503 (531)
                      .||+|...-..
T Consensus       311 ~VRLWkany~n  321 (361)
T KOG2445|consen  311 CVRLWKANYNN  321 (361)
T ss_pred             eeeehhhhhhh
Confidence            99999875433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=4.4e-20  Score=186.98  Aligned_cols=225  Identities=21%  Similarity=0.339  Sum_probs=180.5

Q ss_pred             eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~  319 (531)
                      +++.+ ++-.+++|+.|+.|.+|......       +...+++|+..|.++....++. |+||+.|.++++|...  ++.
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~  133 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV  133 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCC-------chhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence            56664 55568999999999999887433       3446899999999999988887 9999999999999864  344


Q ss_pred             cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                      ..+..|...+..+...+                 ....++++.|..+.+|...      +.+.+|.+|+.-|..+++-++
T Consensus       134 ~~l~gH~asVWAv~~l~-----------------e~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  134 YSLQGHTASVWAVASLP-----------------ENTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             cccCCcchheeeeeecC-----------------CCcEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC
Confidence            44555555544333322                 2245789999999999763      457889999999999999999


Q ss_pred             CeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-CCceEEEEE
Q 009614          400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-REIVSAVCY  478 (531)
Q Consensus       400 ~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~-~~~v~~v~~  478 (531)
                      +.|++|++||.|++|++.....+..+.|...|.++...+ ++..+++++.|++++||+..  .+.....+ ...|+++++
T Consensus       191 ~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence            999999999999999995555555557999999999777 78899999999999999988  45543444 448999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          479 CPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       479 spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      -++|. |++|+.||.||||.....
T Consensus       268 L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  268 LLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             eeCCC-EEEeccCceEEEEEeccc
Confidence            99887 788999999999988743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3e-19  Score=166.35  Aligned_cols=220  Identities=23%  Similarity=0.318  Sum_probs=174.5

Q ss_pred             ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614          275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (531)
Q Consensus       275 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (531)
                      ...+.+..-.+.|++|.|+++|.+|++++.|.+|+|||..+++..+.+..+...+..+.|.......+.+-.        
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--------   76 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--------   76 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--------
Confidence            344456666789999999999999999999999999999999999999988888877777665543333211        


Q ss_pred             ccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEE
Q 009614          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS  433 (531)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~s  433 (531)
                            ..+..+...+...    .+.++.|.||...|+.|+.+|-+ .+++++.|++|++||++..+|...+.-. .-..
T Consensus        77 ------k~d~tIryLsl~d----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi  145 (311)
T KOG1446|consen   77 ------KEDDTIRYLSLHD----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPI  145 (311)
T ss_pred             ------CCCCceEEEEeec----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcc
Confidence                  1122333332222    45688999999999999999988 9999999999999999988887777533 2346


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEeCCCCe--EE---Eec-CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VV---DYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--~~---~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ++|+| .|-+||++.....|++||++.-.  +.   .+. ......+.|.|+|||++|+.++..+.+++.|.-+|.++..
T Consensus       146 ~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t  224 (311)
T KOG1446|consen  146 AAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST  224 (311)
T ss_pred             eeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence            78999 99999999888899999998742  11   222 3456789999999999999999999999999999999888


Q ss_pred             eeeeecc
Q 009614          508 NQICLQG  514 (531)
Q Consensus       508 ~~~~~~~  514 (531)
                      +......
T Consensus       225 fs~~~~~  231 (311)
T KOG1446|consen  225 FSGYPNA  231 (311)
T ss_pred             EeeccCC
Confidence            8765443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=3.6e-20  Score=187.58  Aligned_cols=246  Identities=21%  Similarity=0.267  Sum_probs=196.2

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEE-EEEcc-CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~I  308 (531)
                      +.+|..-+..+++. ++..++++++||++++|+-.....     .....+.+|.+-|.. +++-+ ++-.|++|+.|++|
T Consensus        10 l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eccCccchheeEec-CCeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceE
Confidence            33444444444543 445789999999999998764332     122457788888877 88876 55579999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .+|.+.+...+..+..|+..+.++.....                 ...++++-|.+..+|....      ....+.+|+
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~-----------------~~~iSgSWD~TakvW~~~~------l~~~l~gH~  140 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGED-----------------GTLISGSWDSTAKVWRIGE------LVYSLQGHT  140 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCc-----------------CceEecccccceEEecchh------hhcccCCcc
Confidence            99999999888888877776555432211                 1146788889999998754      345589999


Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      ..|+.++.-|.+.++|||.|++|++|.-  ++++++|. |.+.|..+++-|  +..|++++.||.|+.|++....+....
T Consensus       141 asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~  216 (745)
T KOG0301|consen  141 ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMH  216 (745)
T ss_pred             hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeee
Confidence            9999999999999999999999999975  78888886 999999999987  457899999999999999666677899


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +|..-|+++...+++..+++++.|++++||+..  .+.+.+.++
T Consensus       217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP  258 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP  258 (745)
T ss_pred             ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence            999999999988888999999999999999986  566665543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.3e-19  Score=188.88  Aligned_cols=239  Identities=16%  Similarity=0.182  Sum_probs=183.9

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      |......++|.|+|.+|.+++.||.|++|+......+..      .+.-|...|.+++..  +.+|++|+.+++|.+|.+
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIACY--SNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEeec--ccceEEeeccceEEEeeC
Confidence            445556799999999999999999999999875432211      222377778877764  558999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++.-..+.....+..++.+..+..                ....++.|-.+.+.+...    ......+.+|.++|.+
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~----------------~iaagsdD~~vK~~~~~D----~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGK----------------MIAAGSDDTAVKLLNLDD----SSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCc----------------EEEeecCceeEEEEeccc----cchheeecccCCceee
Confidence            88875544444444455555443332                223445555565555443    2346778999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      |.++|++ +|++.+-||.|++||+.++.+..++.         ....+..++|+| ++..|+..+.|+.|++|+..+...
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCcee
Confidence            9999999 99999999999999999998877764         245678899999 777788888999999999999876


Q ss_pred             E---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          464 V---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       464 ~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      .   ....+...+..+.|+|+|+|||+++.||.|-|||+++
T Consensus       223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            5   2333445599999999999999999999999999996

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=2.7e-20  Score=188.41  Aligned_cols=247  Identities=19%  Similarity=0.257  Sum_probs=192.9

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CCCEEEEEeCCCcEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVR  309 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~  309 (531)
                      ..+..+.+++++|+|++||+|..-|+++||++.....       .-.+.+|...|.|+.|+.   ..++||+|+.|..|+
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH  529 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH  529 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhh-------hhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence            3445667899999999999999999999999884332       224789999999999986   456899999999999


Q ss_pred             EEEcccC-ccccceecCCCCCeeEEEeecCCcce-eeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          310 VWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       310 iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |+|+... ..++++..+...+..+.|..+....- +....+  +........+..++.+..            -++-.-.
T Consensus       530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD--ksimFr~~qk~~~g~~f~------------r~t~t~~  595 (1080)
T KOG1408|consen  530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD--KSIMFRVNQKASSGRLFP------------RHTQTLS  595 (1080)
T ss_pred             EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc--hhhheehhccccCceecc------------ccccccc
Confidence            9999654 45667777777777777766653221 111111  111111112222222211            1111112


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ...+.+|++.|+. ++++++.|+.|+|||+.+++..+.|+    |.+....+...| .+.|+++.+.|.++.++|..+++
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccch
Confidence            4578899999988 99999999999999999999999996    778888999999 99999999999999999999999


Q ss_pred             EE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       463 ~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      ++ ...+|.+.|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            98 6899999999999999999999999999999999864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.6e-20  Score=188.84  Aligned_cols=256  Identities=18%  Similarity=0.286  Sum_probs=201.0

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE-ccCCCEEEEEeCCC
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGEDG  306 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~Dg  306 (531)
                      ...+..|.+-++.+....+++.+++++.|-+|++|+.....     ..+..++..|++.|.|+++ .++..++||||-|+
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence            34566677778888888899999999999999999988543     1344578899999999999 78888999999999


Q ss_pred             cEEEEEcccCcc--ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          307 TVRVWKVIEHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       307 ~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      .|.+||+.++..  +..+.....    ......+...++++..+...   ...+.++..+.+.+|+++..    +.+..+
T Consensus       141 ~IflWDin~~~~~l~~s~n~~t~----~sl~sG~k~siYSLA~N~t~---t~ivsGgtek~lr~wDprt~----~kimkL  209 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNVTV----NSLGSGPKDSIYSLAMNQTG---TIIVSGGTEKDLRLWDPRTC----KKIMKL  209 (735)
T ss_pred             cEEEEEccCcchhhhhhcccccc----ccCCCCCccceeeeecCCcc---eEEEecCcccceEEeccccc----cceeee
Confidence            999999998843  222221110    01111233333444333322   45577888999999999873    456778


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-  461 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-  461 (531)
                      .||+..|.++..+++| .+++++.||+|++||+...+|+.++. |...|+++..+| +-.++++|+.||.|..=|+++. 
T Consensus       210 rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  210 RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCch
Confidence            8999999999999999 99999999999999999999999997 999999999999 8999999999999999999984 


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +...+.....+|..+..+.+.+-+-+++.|+.|+-|...
T Consensus       289 ~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  289 KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             hheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            344455666677778777666666788888999888765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=3.9e-20  Score=170.06  Aligned_cols=213  Identities=20%  Similarity=0.309  Sum_probs=156.1

Q ss_pred             ceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCccc-ccccc-------cceEEcccCCCEEEEEEcc-CCCEEE
Q 009614          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRE-LSSLY-------TGQEFLAHEGSILTMKFSL-DGQYLA  300 (531)
Q Consensus       231 ~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~-~~~~~-------~~~~l~~H~~~I~~l~fsp-dg~~La  300 (531)
                      ...|.+.|+++.+.+ .|+++++|+.||.|.|||++..... .+.+.       ..+.-.+|+-+|..+.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            445667888888877 5789999999999999999865421 11111       1122347888999999999 666889


Q ss_pred             EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      +++.|.+++|||..+.+....+..... +..-.+++-             .........+..+..+.+.+...    +..
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~-------------a~sHcLiA~gtr~~~VrLCDi~S----Gs~  180 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPM-------------AMSHCLIAAGTRDVQVRLCDIAS----GSF  180 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCce-eehhhcChh-------------hhcceEEEEecCCCcEEEEeccC----Ccc
Confidence            999999999999998877665544322 111122211             11122233445555666666554    345


Q ss_pred             eeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEe---------------ecCCceEEEEEeeCCCC
Q 009614          381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVF---------------SHNNYVTSVAFNPVDDN  442 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~---------------~h~~~V~sv~fsp~d~~  442 (531)
                      .+++.||.+.|..+.|+|..  .|++|+.||.|++||++.. .|..++               .|.+.|..++|.. ++.
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~  259 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DAR  259 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cch
Confidence            78899999999999999988  8999999999999999854 333332               2778999999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe
Q 009614          443 YFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ++++++.|..+++|+..+++
T Consensus       260 ~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hhhhccCccceEEeecccCc
Confidence            99999999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1e-20  Score=175.22  Aligned_cols=244  Identities=18%  Similarity=0.342  Sum_probs=182.9

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      +.+.+|++.+-.++.......+.+++.|.+-+||.+..+..       ...+.||.+.|++|+|++.+.++++++.|++.
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------LATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-------eeeecccccceeeEEeccccceEEEccCCcch
Confidence            34677888888888888888899999999999999986554       34589999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      +||...-.-....-..+.....        ....-.-+  .  -..........++..          ...|+..+.+|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSs--------EeE~e~sD--e--~~~d~d~~~~sD~~t----------iRvPl~~ltgH~  272 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSS--------EEEEEHSD--E--HNRDTDSSEKSDGHT----------IRVPLMRLTGHR  272 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCc--------hhhhhccc--c--cccccccccccCCce----------eeeeeeeeeccc
Confidence            9997421110000000000000        00000000  0  000000000011100          134688899999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC--eEE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVV  464 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~--~~~  464 (531)
                      +.|.+..|...| .+++++.|.+..+||++++..+..+. |....+-++-+| ..+++++.+.|.+.++||.+..  .+-
T Consensus       273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~  351 (481)
T KOG0300|consen  273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVA  351 (481)
T ss_pred             cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceee
Confidence            999999999988 99999999999999999999999986 999999999999 8999999999999999999953  233


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      .+.+|.+.|+++.|.-|.+ +++|+.|.+|++||+++.+
T Consensus       352 VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             eecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            5899999999999998764 8999999999999998644

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=1.3e-20  Score=184.01  Aligned_cols=247  Identities=18%  Similarity=0.264  Sum_probs=201.5

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc--ccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~--~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +.|.+++++...+++.+|++ |-|+|||+......  .+.+.    ...-...|.++.+.|||+.|++|++-.++.|||+
T Consensus       420 EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd----cl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  420 EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD----CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             cEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccc----ccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            44555889999999999976 88999999865322  11111    2223567999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .....-...........|..+..+....+              .+....++.+.+|+...    ...+..|+||+..+.|
T Consensus       495 AapTprikaeltssapaCyALa~spDakv--------------cFsccsdGnI~vwDLhn----q~~VrqfqGhtDGasc  556 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKV--------------CFSCCSDGNIAVWDLHN----QTLVRQFQGHTDGASC  556 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccce--------------eeeeccCCcEEEEEccc----ceeeecccCCCCCcee
Confidence            77654434444444444544443333222              25667788999999876    3458899999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~  472 (531)
                      |.++++| .|.+|+-|.+||.||++.++.+........|.++-.+| .+.+++.|-.++.|.|......+...+..|..-
T Consensus       557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheSc  635 (705)
T KOG0639|consen  557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESC  635 (705)
T ss_pred             EEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccE
Confidence            9999999 99999999999999999999998888899999999999 999999999999999999998888889999999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      |.++.|.+.|+++++.+.|+.+..|.+.-|.-+-
T Consensus       636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             EEEEEecccCceeeecCchhhhhhccCcccccee
Confidence            9999999999999999999999999987665443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.84  E-value=5.1e-20  Score=180.63  Aligned_cols=219  Identities=18%  Similarity=0.308  Sum_probs=164.0

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc-ccc--cc--cceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEE
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSS--LY--TGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVR  309 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~-~~~--~~--~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~  309 (531)
                      ..++++.|++.|..|++.+.....+|+|-...... +..  .|  -...-+||...++|.+|+|+. ..++|++.||++|
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR  294 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR  294 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence            56778999999999999888999999987753321 100  00  012347999999999999954 4789999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      |||+...+....+-.                                                        .....+..-
T Consensus       295 iWdv~~~k~q~qVik--------------------------------------------------------~k~~~g~Rv  318 (641)
T KOG0772|consen  295 IWDVNNTKSQLQVIK--------------------------------------------------------TKPAGGKRV  318 (641)
T ss_pred             EEecCCchhheeEEe--------------------------------------------------------eccCCCccc
Confidence            999976542111100                                                        000123345


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--Ee--ecCC--ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF--SHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~--~h~~--~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      .++..+|++++ .|++|+.||.|.+|+......-.  .+  .|..  .|+||.|++ ++++|++-+.|+++++||++..+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccc
Confidence            78899999999 99999999999999986543222  22  2766  899999999 99999999999999999999854


Q ss_pred             -EE-EecCC--CCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeEEEEeeee
Q 009614          463 -VV-DYTDI--REIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       463 -~~-~~~~~--~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~l~~~~~~~  511 (531)
                       ++ .+.+.  .-+-+.+||+|+.++|++|+.      .|++.+||..+-..++++.+.
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence             33 23333  335678999999999999875      578999999988888876653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.6e-20  Score=187.12  Aligned_cols=299  Identities=15%  Similarity=0.158  Sum_probs=200.4

Q ss_pred             ccccCCCCcccccccccCCCCCccccccCCccccccchhhHHhhhhhcccccccccc-----ceeeeccccceeeeCCCC
Q 009614          174 LQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA-----MARIIDRHGSATLKPGDH  248 (531)
Q Consensus       174 lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~~~k~~~~~w~~~~~~-----~~~~~~~~~s~~fspdg~  248 (531)
                      ||.|......--+.|+||+.+   ++.+..++.........-.++..++.-++++.+     +.+|.+.+.+++..|.|.
T Consensus       337 LR~VPaY~r~irErFeRcLDL---YL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~  413 (733)
T KOG0650|consen  337 LRKVPAYERSIRERFERCLDL---YLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGE  413 (733)
T ss_pred             hhcchhHHHHHHHHHHHhHHh---hhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcc
Confidence            999999888889999999984   233334443333332222355566666676664     788889999999999999


Q ss_pred             eEEeeecCCeEEEEeCCCCccccccccc----------------------------------------------------
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELSSLYT----------------------------------------------------  276 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~----------------------------------------------------  276 (531)
                      +||+|+.||+|+||.+.++........-                                                    
T Consensus       414 wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~  493 (733)
T KOG0650|consen  414 WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNES  493 (733)
T ss_pred             eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCcc
Confidence            9999999999999998865532110000                                                    


Q ss_pred             ----------------c----eEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCeeEE
Q 009614          277 ----------------G----QEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (531)
Q Consensus       277 ----------------~----~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (531)
                                      .    .....|...|..|.|+..|.||++...   ...|.|.++........+....+.+.++.
T Consensus       494 ~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~  573 (733)
T KOG0650|consen  494 EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVK  573 (733)
T ss_pred             CCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEE
Confidence                            0    011234455555555555555555433   23455555554444433433344444444


Q ss_pred             EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEE
Q 009614          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR  412 (531)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~  412 (531)
                      |.+.....+++.                 ...+.+|+...    ...++.+......|..|+++|.| .|+.|+.|+.+.
T Consensus       574 FHPs~p~lfVaT-----------------q~~vRiYdL~k----qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  574 FHPSKPYLFVAT-----------------QRSVRIYDLSK----QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMC  632 (733)
T ss_pred             ecCCCceEEEEe-----------------ccceEEEehhH----HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence            444333322221                 12233443322    12244555567789999999999 999999999999


Q ss_pred             EEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC------C-CeEE---EecCCCCc----eEEE
Q 009614          413 LWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR------R-CQVV---DYTDIREI----VSAV  476 (531)
Q Consensus       413 lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~------~-~~~~---~~~~~~~~----v~~v  476 (531)
                      .+|+.-. ++.+++. |...+++|+||+ .-.+|++|+.||++.|+.-.      . ..++   .+.+|...    |..+
T Consensus       633 WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~  711 (733)
T KOG0650|consen  633 WFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT  711 (733)
T ss_pred             EEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence            9999744 5556665 899999999999 88999999999999998532      2 2222   35566544    8999


Q ss_pred             EEccCCCEEEEEeCCCcEEEE
Q 009614          477 CYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       477 ~~spdg~~l~sgs~dg~I~iw  497 (531)
                      +|+|...+|++++.||+|++|
T Consensus       712 ~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  712 IWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccCCCceEEecCCCceEEee
Confidence            999999999999999999998

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.84  E-value=1.1e-19  Score=176.41  Aligned_cols=244  Identities=17%  Similarity=0.204  Sum_probs=174.4

Q ss_pred             ccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614          282 AHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (531)
Q Consensus       282 ~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (531)
                      -|.+.|+.+...|+. ..+|+++..+.|.|||..+............+...+.....   .-.  ...-........+++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~---eg~--glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK---EGY--GLSWNRQQEGTLLSG  196 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc---ccc--ccccccccceeEeec
Confidence            489999999999955 46777888999999998654432221110000001111110   000  111112234456788


Q ss_pred             CCCceEEEeCCcccccc---CcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--CeEEEEe-ecCCceE
Q 009614          361 SSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--DRCLRVF-SHNNYVT  432 (531)
Q Consensus       361 ~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~--~~~l~~~-~h~~~V~  432 (531)
                      +.+..+.+|+.......   ..+...+.+|...|.+++|++..  +|++++.|+.+.|||+++  .++.+.. .|...|+
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            99999999999877663   45678899999999999999976  999999999999999995  3443333 4999999


Q ss_pred             EEEEeeCCCCEEEEEeCCCeEEEEeCCCC--eEEEecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEe-
Q 009614          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQN-  508 (531)
Q Consensus       433 sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~--~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~-  508 (531)
                      |++|+|.++.+||+|+.|++|++||+|+.  .+..+.+|...|..|.|+|+. ..|++++.|+.+.+||+..-...+.. 
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            99999999999999999999999999985  345799999999999999965 57888999999999999642222210 


Q ss_pred             -----eeeecccccCCCceeeeEEEee
Q 009614          509 -----QICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       509 -----~~~~~~~kk~~~~~It~l~f~p  530 (531)
                           +..+.--...|..+|..|.|+|
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp  383 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNP  383 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCC
Confidence                 1111111223456788888876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.84  E-value=3.1e-19  Score=184.21  Aligned_cols=281  Identities=17%  Similarity=0.236  Sum_probs=206.2

Q ss_pred             eccccceeeeCCCCe-EEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          235 IDRHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       235 ~~~~~s~~fspdg~~-lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      .++|.+++|..||+. +|+|...|.+.+||+.+.+...      +...+|.++|....|.|....|++++.|..+++|=.
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee------eeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            367888999999975 5678888999999999655432      234579999999999999999999999999999966


Q ss_pred             ccCc----cccceecCCCCCeeEEEeecCCcceeeeeccccc-------------------------c------------
Q 009614          314 IEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------I------------  352 (531)
Q Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~------------  352 (531)
                      .++.    .++.-..|..++.|+.+.......+.....+...                         .            
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            5432    3333345666666666543332222221111100                         0            


Q ss_pred             -------------ccccccccCCCceEEEeCCcc-------------------------------------------ccc
Q 009614          353 -------------DKTKSLRKSSDLTCVVLPPKV-------------------------------------------FRL  376 (531)
Q Consensus       353 -------------~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~  376 (531)
                                   ........-.+..+..|+.+.                                           +++
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence                         000000011111222222111                                           111


Q ss_pred             cC-cceeEe---ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          377 LE-KPLHEF---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       377 ~~-~~~~~~---~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                      .. -....+   ..|.++|+.++...-+ .+++++.+|.+++||..+...+..+.-...++++..+. ....++.+..|-
T Consensus       478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf  556 (910)
T KOG1539|consen  478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDF  556 (910)
T ss_pred             ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCce
Confidence            11 112233   4689999999998877 89999999999999999999999998888999999998 788999999999


Q ss_pred             eEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          452 KVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .|+++|+.+.+++. +.+|.+.|++++|||||++|++++.|++|++||+.++.++.-+.+.         ..++++.|+|
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~SP  627 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSFSP  627 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEECC
Confidence            99999999999885 8889999999999999999999999999999999999999877654         5778888887


Q ss_pred             C
Q 009614          531 I  531 (531)
Q Consensus       531 ~  531 (531)
                      .
T Consensus       628 n  628 (910)
T KOG1539|consen  628 N  628 (910)
T ss_pred             C
Confidence            3

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=9.2e-20  Score=172.78  Aligned_cols=210  Identities=18%  Similarity=0.309  Sum_probs=161.9

Q ss_pred             ccccccccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEE
Q 009614          223 GWLKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLA  300 (531)
Q Consensus       223 ~w~~~~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~La  300 (531)
                      .-.+++.++.+|...-..++|+|-. ..+++|..-+.|++|...++...+..    +.+.+|+.+|-.|+|||. ...||
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----~Pf~gH~~SVEDLqWSptE~~vfa  274 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----RPFTGHTKSVEDLQWSPTEDGVFA  274 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----ccccccccchhhhccCCccCceEE
Confidence            3445566677777777789999933 34788988999999999876544332    246789999999999994 55899


Q ss_pred             EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      ||+.||+|+|||++.+....                                                            
T Consensus       275 ScS~DgsIrIWDiRs~~~~~------------------------------------------------------------  294 (440)
T KOG0302|consen  275 SCSCDGSIRIWDIRSGPKKA------------------------------------------------------------  294 (440)
T ss_pred             eeecCceEEEEEecCCCccc------------------------------------------------------------
Confidence            99999999999998764211                                                            


Q ss_pred             eeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~---~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      ....+.|.+.|+.|.|+..- +|++|+.||+++|||++.   ++++..|. |..+|++|.|+|.+...|++++.|.+|.|
T Consensus       295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            11236799999999999887 899999999999999984   66778886 99999999999988889999999999999


Q ss_pred             EeCCCCe-------------------EEEecCCCCceEEEEEccCC-CEEEEEeCCCcEEEE
Q 009614          456 WEVRRCQ-------------------VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFY  497 (531)
Q Consensus       456 wd~~~~~-------------------~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iw  497 (531)
                      ||+....                   ++-.......+-.+.|++.- -+|++.+.||. .||
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf  435 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF  435 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence            9986321                   11111123456778899854 46777777884 444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.8e-19  Score=167.34  Aligned_cols=211  Identities=19%  Similarity=0.353  Sum_probs=154.2

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc----ccceecCCCCCeeEEEeecCCcceeeeeccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (531)
                      ..+++|.+.|++|+|+.||++|||++.|++|+||++..-..    ..........+..+.|.++-...++.+.... .+.
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~-~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN-KLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC-EEE
Confidence            36899999999999999999999999999999999875322    1122333446677777777766665554222 111


Q ss_pred             cccccc---cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-C
Q 009614          354 KTKSLR---KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-N  428 (531)
Q Consensus       354 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h-~  428 (531)
                      ......   ++.....+-|+.         ..--..|.-.|..+-...++ +|++++.|..|.||+++ |+.+..+.. .
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq  228 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ  228 (420)
T ss_pred             EEEeeecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence            111111   111111112221         11123467777788777777 99999999999999998 888888863 3


Q ss_pred             CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC---C------eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---C------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       429 ~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~---~------~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      ..-+..+.+| +|+++++++.---|++|.+--   |      ++..+.+|...|+++||+|+...+++.+.||+++|||+
T Consensus       229 ~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  229 SSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             ccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            4456678999 999999999999999998732   2      24468999999999999999999999999999999998


Q ss_pred             C
Q 009614          500 K  500 (531)
Q Consensus       500 ~  500 (531)
                      .
T Consensus       308 d  308 (420)
T KOG2096|consen  308 D  308 (420)
T ss_pred             c
Confidence            6

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=9.9e-20  Score=168.77  Aligned_cols=255  Identities=14%  Similarity=0.169  Sum_probs=202.7

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCC------CCcc--------cc---------------cc----c
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVK------KQSR--------EL---------------SS----L  274 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~------~~~~--------~~---------------~~----~  274 (531)
                      +..+++|.+.++++.|++.+.++++++.|++-.||...      ....        +.               +.    .
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            44688899999999999999999999999999999732      1100        00               00    0


Q ss_pred             ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614          275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (531)
Q Consensus       275 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (531)
                      .+...+.+|.+.|.+..|-..|+.+++++.|.+..+||+.+++.+..+..+......+...+..                
T Consensus       263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ----------------  326 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ----------------  326 (481)
T ss_pred             eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc----------------
Confidence            1123478999999999999999999999999999999999999988887776654433222211                


Q ss_pred             ccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC-eEEEEeecCCceEE
Q 009614          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTS  433 (531)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~-~~l~~~~h~~~V~s  433 (531)
                      ...++.+.+....+|+.+.   .-..+..|+||+..|+++.|..+..+++|+.|.+|++||+++. .++.++....+++.
T Consensus       327 rLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR  403 (481)
T KOG0300|consen  327 RLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR  403 (481)
T ss_pred             eEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccce
Confidence            2224566777888888662   2345788999999999999999889999999999999999864 57888889999999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-----ecCCCCceEEEEEccCC--CEEEEEeCCCcEEEEeCCCC
Q 009614          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-----~~~~~~~v~~v~~spdg--~~l~sgs~dg~I~iwd~~~~  502 (531)
                      ++.+. .+.+|+.--.+..|++||+...++..     ..+|...|++++|..+.  .-|++++-|..+.-|.+...
T Consensus       404 vavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  404 VAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99998 77788888888999999999877653     56788999999998654  34788888999999988754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=2.8e-19  Score=173.43  Aligned_cols=257  Identities=17%  Similarity=0.234  Sum_probs=181.0

Q ss_pred             cceeeeccccceeeeCCCC--eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCC
Q 009614          230 AMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG  306 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~--~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg  306 (531)
                      .++-+..++.+++|+|...  ++|+|.+-|+|-+||+..........   ..+..|.++|.+|.|+| +...+++.+.||
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCc
Confidence            3555667888999999775  78999999999999997444333222   24678999999999999 556899999999


Q ss_pred             cEEEEEcccCccccceecCCCCCee--EEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSC--LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      +|++-|+.++..-..+.........  +.+.......                +.+..-+...+|+.++-.   .....+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~v----------------l~~~~~G~f~~iD~R~~~---s~~~~~  318 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSV----------------LFGDNVGNFNVIDLRTDG---SEYENL  318 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccE----------------EEeecccceEEEEeecCC---ccchhh
Confidence            9999999876543333222111111  1111111111                111112234444444322   224445


Q ss_pred             ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-----EEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~-----~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      .-|...|..|+++|..  +|+|++.|++++|||++.-.     .+.++.|...|.+..|+|.++ .|++.+.|..|+|||
T Consensus       319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEee
Confidence            6688899999999987  99999999999999998532     366677999999999999544 599999999999999


Q ss_pred             CC----CCeEEEecCCC------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          458 VR----RCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       458 ~~----~~~~~~~~~~~------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ..    .-.+.....|.      -......|.|+..++++|-.-..|-|||-..++.+.++.
T Consensus       398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH  459 (498)
T ss_pred             cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence            84    22222222222      134567899999999999999999999999999776643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.2e-19  Score=177.24  Aligned_cols=215  Identities=16%  Similarity=0.246  Sum_probs=176.1

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~  319 (531)
                      |++......++++|+..+.|+|||++.       ....+.+++|+..|++|.++-...|||+++..|-|.|..+.++...
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence            444445558999999999999999982       2234468899999999999999999999999999999999887643


Q ss_pred             cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                      ..+...                                                             ....|.-+.++|.
T Consensus       157 t~f~~~-------------------------------------------------------------sgqsvRll~ys~s  175 (673)
T KOG4378|consen  157 TTFTID-------------------------------------------------------------SGQSVRLLRYSPS  175 (673)
T ss_pred             cceecC-------------------------------------------------------------CCCeEEEeecccc
Confidence            333211                                                             1223457788887


Q ss_pred             C--eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEE
Q 009614          400 G--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA  475 (531)
Q Consensus       400 ~--~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~  475 (531)
                      .  +|.+++.+|.|.+||+....++..+.  |..+...|+|+|.+..+|++.+.|.+|.+||++..+.........+.++
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst  255 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST  255 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence            6  88899999999999999988888775  9999999999998899999999999999999998888877777889999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeE-EEEeeeeecccccCCCceeeeEEEee
Q 009614          476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       476 v~~spdg~~l~sgs~dg~I~iwd~~~~~l-~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ++|.++|.+|+.|...|.|..||++..+. +..        ...+...||.|+|.|
T Consensus       256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v--------~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV--------RSAHDASVTRVAFQP  303 (673)
T ss_pred             eeecCCceEEEeecCCceEEEEecccCCCCceE--------eeecccceeEEEeee
Confidence            99999999999999999999999986543 221        123335588888876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=7.3e-20  Score=175.11  Aligned_cols=170  Identities=26%  Similarity=0.448  Sum_probs=149.7

Q ss_pred             cccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccc
Q 009614          274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (531)
Q Consensus       274 ~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (531)
                      .+..+.+..|+..|+-+.||++|+|||||+.|.+..||++.....                                   
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------------------------------  258 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------------------------------  258 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------------------------------
Confidence            344567889999999999999999999999999999999743321                                   


Q ss_pred             cccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--Cc
Q 009614          354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NY  430 (531)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~--~~  430 (531)
                                              -+..+++.+|..+|.-+.|+|+. +|++|+.|..+++||+.+|.+...+.+.  ..
T Consensus       259 ------------------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S  314 (519)
T KOG0293|consen  259 ------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS  314 (519)
T ss_pred             ------------------------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence                                    02367788999999999999999 9999999999999999999999998754  88


Q ss_pred             eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       431 V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      +.+++|.| |+..|++|+.|+.|..||+.....-.|.+.. ..|.+++.++||+++++.+.|..|++|+..+..
T Consensus       315 ~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~  387 (519)
T KOG0293|consen  315 VSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV  387 (519)
T ss_pred             cceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence            99999999 9999999999999999999987766776665 469999999999999999999999999987643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.8e-19  Score=164.34  Aligned_cols=248  Identities=15%  Similarity=0.210  Sum_probs=181.9

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      .|+.|++.|.+||+|..+|.|.|||+.+.       ...+.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            35889999999999999999999999843       35567899999999999999999999999999999999999998


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccc-------------------------------cccccccccCCCceEE
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------------IDKTKSLRKSSDLTCV  367 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~  367 (531)
                      ++.+.... ++....+.+...+..++..+....                               ....+.+.++..+.+.
T Consensus       100 l~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  100 LKRIRFDS-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eeEEEccC-ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            77766533 233333333333332222111100                               0122345667777777


Q ss_pred             EeCCccccccCcceeEeecCC-CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-------eEE--EEee---cCCceEE
Q 009614          368 VLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-------RCL--RVFS---HNNYVTS  433 (531)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-------~~l--~~~~---h~~~V~s  433 (531)
                      +++..+..    .+..++-.. ..|..|.++..| .|+.-+.|..||.|+++.-       .+-  +.+.   ...+-.+
T Consensus       179 v~~a~t~e----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  179 VYDAETLE----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             EEecchhe----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            77766653    344444444 678899999999 9999999999999998621       111  1111   2345578


Q ss_pred             EEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEEE-ecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          434 VAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD-YTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~~-~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ++|+. ++.|+++|+. -..++||....|.+++ +.+.. .....+.|+|-...+++- ..|.++||...
T Consensus       255 ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  255 CCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             eeecC-CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            89998 8999888774 4579999999999997 55555 567889999998877777 68999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=5.9e-20  Score=188.10  Aligned_cols=209  Identities=18%  Similarity=0.314  Sum_probs=165.6

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcc---cCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA---HEGSILTMKFSL-DGQYLASGGEDGTVRVW  311 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~---H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iW  311 (531)
                      ...++++..++-..++.+++ ..++||.+........   +...++.   -.-.+..|+|.. +.++|||++..|.|.+|
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~---~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEK---CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcc---eeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            34456788888888888765 5678887764433221   1111111   113466788876 67799999999999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      |+.....                                                           ++.+..|..|...+
T Consensus       116 dlnk~~r-----------------------------------------------------------nk~l~~f~EH~Rs~  136 (839)
T KOG0269|consen  116 DLNKSIR-----------------------------------------------------------NKLLTVFNEHERSA  136 (839)
T ss_pred             ecCcccc-----------------------------------------------------------chhhhHhhhhccce
Confidence            9854210                                                           12345577899999


Q ss_pred             eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE--EEe
Q 009614          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDY  466 (531)
Q Consensus       392 ~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~--~~~  466 (531)
                      +++.|++..  +|++|+.||+|++||++......++. ....|..|+|+|..+++|+++...|.+++||++....  .++
T Consensus       137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~  216 (839)
T KOG0269|consen  137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL  216 (839)
T ss_pred             eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh
Confidence            999999976  99999999999999999988887775 6678999999998899999999999999999998653  368


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ..|.++|.++.|+|++.+||+|+.|+.|+|||+.+++....
T Consensus       217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence            99999999999999999999999999999999987665443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=9.5e-18  Score=165.94  Aligned_cols=254  Identities=13%  Similarity=0.156  Sum_probs=171.1

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~  315 (531)
                      +..++|+|++..+ +++..++.|++|+.......       ..+..|. .+..+.|+|+++.|+++ +.|+.|++||+.+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            4468999999976 56778999999998754321       1233333 35678999999977654 5689999999988


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .+.+..+... ..+..+.+.++..  .+....             .....+..|+......    ..... ....+..++
T Consensus       105 ~~~~~~~~~~-~~~~~~~~~~dg~--~l~~~~-------------~~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~  163 (300)
T TIGR03866       105 RKVLAEIPVG-VEPEGMAVSPDGK--IVVNTS-------------ETTNMAHFIDTKTYEI----VDNVL-VDQRPRFAE  163 (300)
T ss_pred             CeEEeEeeCC-CCcceEEECCCCC--EEEEEe-------------cCCCeEEEEeCCCCeE----EEEEE-cCCCccEEE
Confidence            7766555422 1233444443332  111111             1111233344332211    11111 223457899


Q ss_pred             EcCCC-eEE-EEeCCCcEEEEECCCCeEEEEeecC------C--ceEEEEEeeCCCCEEEE-EeCCCeEEEEeCCCCeEE
Q 009614          396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHN------N--YVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       396 ~sp~~-~l~-s~s~Dg~V~lwdl~~~~~l~~~~h~------~--~V~sv~fsp~d~~~l~s-gs~Dg~I~Iwd~~~~~~~  464 (531)
                      |+|++ +|+ ++..++.|++||+.+++.+..+...      .  ....++|+| +++++++ .+.++.|.+||+.+++++
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            99999 554 5556999999999999887766411      1  235688999 8887544 455678999999998887


Q ss_pred             EecCCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ....+...+.+++|+|+|++|+++ ..+|.|++||+.+++++..+++.         +..++|+|+|
T Consensus       243 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~---------~~~~~~~~~~  300 (300)
T TIGR03866       243 DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG---------RLPWGVVVRP  300 (300)
T ss_pred             EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc---------cccceeEeCC
Confidence            654556689999999999999886 46899999999999998887642         3447887765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.1e-20  Score=192.05  Aligned_cols=193  Identities=23%  Similarity=0.428  Sum_probs=172.8

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...+.++.|++...+|++|+.+|+|++||+....       ..+++.||...+..|.|+|-+.|.|+|+.|+-++
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~  137 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLK  137 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-------hhhhhhccccCcceeeeccceEEeccccccccce
Confidence            378899999999999999999999999999999998433       3346889999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +||++...+                                                              .+.+.+|..
T Consensus       138 iwD~Rk~Gc--------------------------------------------------------------~~~~~s~~~  155 (825)
T KOG0267|consen  138 IWDIRKKGC--------------------------------------------------------------SHTYKSHTR  155 (825)
T ss_pred             ehhhhccCc--------------------------------------------------------------eeeecCCcc
Confidence            999864432                                                              456778999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y  466 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~  466 (531)
                      .+..+.|+|+| ++++++.|.+++|||+..|+.+..|. |...+.++.|+| ..-++++|+.|++|++||+++.+++. .
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999 99999999999999999999999998 999999999999 88899999999999999999988884 4


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      ......|.+..|+|++..+++|....
T Consensus       235 ~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCccCCceeeeecCCceeeecCchhh
Confidence            44577899999999999888887654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=162.23  Aligned_cols=249  Identities=14%  Similarity=0.169  Sum_probs=175.7

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc----------ccc----------------------cccc
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------LSS----------------------LYTG  277 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~----------~~~----------------------~~~~  277 (531)
                      .+.+|.+.+.+++|+.||+.||+++.|+.|+||++++....          +..                      ++..
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            47889999999999999999999999999999998753211          000                      0000


Q ss_pred             e--------------------EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeec
Q 009614          278 Q--------------------EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN  337 (531)
Q Consensus       278 ~--------------------~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  337 (531)
                      .                    --+.|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+............+|+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            0                    011244455555566677899999999999999997 8888887776665555555555


Q ss_pred             CCcceeeeeccccccccccccccCCCceEEEeCCc----cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEE
Q 009614          338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK----VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVR  412 (531)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~  412 (531)
                      ..-.. +..+..               .+.+|.+-    ..-..-..+..++||...|+.++|+|+. .+++.+.||+++
T Consensus       240 GRFia-~~gFTp---------------DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  240 GRFIA-VSGFTP---------------DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             CcEEE-EecCCC---------------CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence            43221 111211               12223221    0001123467789999999999999999 999999999999


Q ss_pred             EEECCC-------CeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEE
Q 009614          413 LWQVGI-------DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCY  478 (531)
Q Consensus       413 lwdl~~-------~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~  478 (531)
                      |||+.-       .+.++.+.     ..+....+..+| .++.|+.+. ...+++|..++++...  -..|...|++|+|
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~  381 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISY  381 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence            999852       22333331     223334899999 888887754 4689999999988774  4568889999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEe
Q 009614          479 CPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       479 spdg~~l~sgs~dg~I~iwd  498 (531)
                      +++|+++++++ |..++++.
T Consensus       382 ~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  382 SSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             cCCCcEEeeec-ceeeeeec
Confidence            99999999998 67788876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.3e-18  Score=168.86  Aligned_cols=266  Identities=17%  Similarity=0.249  Sum_probs=197.1

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV  313 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~  313 (531)
                      ...+.++.|||..+++++++.|++++||.+......     ..+.+.--..+|.+..|.|+|. .+++++.-..++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            356678999999999999999999999999865443     2334545577999999999999 8999999999999999


Q ss_pred             ccCccccceecCCC-CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          314 IEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      .+.+..+--..... ....-.|...+.+..+++              .+..+.+.+....+..+    +..++ -.+.|.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~--------------~G~~G~I~lLhakT~el----i~s~K-ieG~v~  348 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI--------------AGNNGHIHLLHAKTKEL----ITSFK-IEGVVS  348 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEE--------------cccCceEEeehhhhhhh----hheee-eccEEe
Confidence            88764332211111 112223333333333322              23334444444333222    22222 357899


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCce--EEEEEeeCCCCEEEEEeCCCeEEEEeCCCC------eE
Q 009614          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRC------QV  463 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V--~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~------~~  463 (531)
                      .++|+.++ .|++++.+|.|.+||++...+++.|...+.|  +++|.++ ++.|||+|+..|.|.|||..+.      ++
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCc
Confidence            99999999 8888899999999999999999999866555  6677778 8999999999999999997653      33


Q ss_pred             E-EecCCCCceEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          464 V-DYTDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      + .+......|+++.|+||+++|+.++.  +..+++-.+.+......++..     ..+...+|.++|+|
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vtc~aFSP  492 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVTCMAFSP  492 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-----CCcccceEEEEecC
Confidence            4 35566778999999999999988775  677999999998888777643     34457999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=3.6e-19  Score=172.12  Aligned_cols=241  Identities=17%  Similarity=0.203  Sum_probs=186.1

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccc--------------eEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEE
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV  310 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~--------------~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~i  310 (531)
                      -|+++|.|+.+..|.|||+.-....+..+..+              ..-.+|+.+|..|+|+.+ .+.|||||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            46799999999999999997544332222111              123479999999999885 458999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.++++...+..+...+.++.|.+....               .++.++.++.+.+.+.+......    ..-.-.+.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~---------------~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~  331 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPS---------------VLLSGSYDGTVALKDCRDPSNSG----KEWKFDGE  331 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCce---------------EEEeccccceEEeeeccCccccC----ceEEeccc
Confidence            999999999999988899999988776643               34677888888888877522111    11123578


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       391 I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      |-.++|.|..  .++++..||+|+-+|++.. +++.++. |.+.|.+|++++....++++++.|+.|++|++..-..-..
T Consensus       332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v  411 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV  411 (463)
T ss_pred             eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence            9999999987  8889999999999999975 7888876 9999999999998889999999999999999876443222


Q ss_pred             cCCC---CceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEE
Q 009614          467 TDIR---EIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       467 ~~~~---~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ..|.   +...+.++.|+- -.++.|+..+.++|||+.++..+
T Consensus       412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            2221   225566666754 45788888899999999887654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3.6e-18  Score=158.50  Aligned_cols=222  Identities=19%  Similarity=0.280  Sum_probs=177.6

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      .+.++++.|+|.+..|++++.||.+++|+.......+        .-.|..++.+++|.+ ...+++|+-||.|+.+|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------heecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence            4678889999999999999999999999998653211        234899999999987 4578999999999999998


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      ++..                                                               ..+..|..+|.||
T Consensus        84 ~~~~---------------------------------------------------------------~~igth~~~i~ci  100 (323)
T KOG1036|consen   84 TGNE---------------------------------------------------------------DQIGTHDEGIRCI  100 (323)
T ss_pred             CCcc---------------------------------------------------------------eeeccCCCceEEE
Confidence            7652                                                               2345689999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---ecCCC
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIR  470 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~  470 (531)
                      ..++-. .+++|+.|++|++||.+...+...+.....|.|+..   .++.|++|+.|.+|.+||+++.....   -...+
T Consensus       101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk  177 (323)
T KOG1036|consen  101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK  177 (323)
T ss_pred             EeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence            999855 999999999999999999888888887789999987   56899999999999999999876542   44556


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE----EEeeeeecccc-cCCCceeeeEEEeeC
Q 009614          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY----QQNQICLQGKK-KLPGKRITGFQVVKI  531 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~----~~~~~~~~~~k-k~~~~~It~l~f~p~  531 (531)
                      -.+.+|++-|++...++++.||.|.+=.+...+..    ..++.+....+ ....-+|.+|+|+|+
T Consensus       178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            67899999999999999999999888766655222    23333322222 234568899999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.2e-18  Score=157.99  Aligned_cols=233  Identities=17%  Similarity=0.236  Sum_probs=168.7

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccce--ecCCCCCeeEEEeecCCcceeeeeccccccc--
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKID--  353 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  353 (531)
                      +++++|.+.|.+|+|+.+|..|++|+.|+++.+|++.........  ..+...+..+.+.+.+...++....+.....  
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            467899999999999999999999999999999999877655443  3444445556666666555554433322110  


Q ss_pred             -----cccccccCCCceEEEeCCccccc--------------cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEE
Q 009614          354 -----KTKSLRKSSDLTCVVLPPKVFRL--------------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRL  413 (531)
Q Consensus       354 -----~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~l  413 (531)
                           ....+........+.|.+.....              ....+..-......+.-++|+.++ +++....-|+|.|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence                 00011111122222222211000              000111112234567888998776 6666666799999


Q ss_pred             EECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCC
Q 009614          414 WQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMT  491 (531)
Q Consensus       414 wdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~d  491 (531)
                      .....-+++..+. |+....||.|+| +|+|||+|+.|..+.+||+...-++. +..+.-+|..+.|+.||++||+|+.|
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             EeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            9999988888886 999999999999 99999999999999999999877664 67788899999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEeeee
Q 009614          492 GNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       492 g~I~iwd~~~~~l~~~~~~~  511 (531)
                      ..|-|=++++|..+.+++..
T Consensus       253 h~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             ceEEeEecccCCeEEEeecc
Confidence            99999999999999887743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.7e-19  Score=190.90  Aligned_cols=248  Identities=18%  Similarity=0.304  Sum_probs=187.8

Q ss_pred             ccccceeeeCCCCe----EEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEE
Q 009614          236 DRHGSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV  310 (531)
Q Consensus       236 ~~~~s~~fspdg~~----lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~i  310 (531)
                      .+.+.++|.+.|..    ||.|..||.|.+|+....... ...........|++.|.++.|++. +++||+|+.||.|.|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccC-cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            34455778777766    888999999999998864111 112223356789999999999995 459999999999999


Q ss_pred             EEcccCccccceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          311 WKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       311 Wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ||+.+.+.......  ....+.++.|...               ......+++.++.+.+||.+.-    +++..+..|.
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrk---------------vqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~  204 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRK---------------VSHILASGSPSGRAVIWDLRKK----KPIIKLSDTP  204 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchh---------------hhHHhhccCCCCCceeccccCC----CcccccccCC
Confidence            99987654443321  2233444443221               2223356777889999998863    4455555554


Q ss_pred             C--CeeEEEEcCCC--eEEEEeCCC---cEEEEECCC-CeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          389 S--EVLDLSWSKNG--FLLSSSADK---TVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       389 ~--~I~~l~~sp~~--~l~s~s~Dg---~V~lwdl~~-~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      +  .+..|+|+|++  .|++++.|.   .|.+||++. ..+++++ .|...|.+|.|++.|..++++++.|+.|.+|+..
T Consensus       205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence            4  57799999998  777777664   499999984 4567777 4999999999999888999999999999999999


Q ss_pred             CCeEEE-ecCCCCceEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 009614          460 RCQVVD-YTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       460 ~~~~~~-~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~~~~  503 (531)
                      +++++. +.....++..+.|+|... .+++++-||.|-||.+.++.
T Consensus       285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999985 666678999999999765 78889999999999997654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.4e-18  Score=159.62  Aligned_cols=279  Identities=18%  Similarity=0.263  Sum_probs=198.3

Q ss_pred             cCCcceeeeecCCCceeEEccCCCchhhhhhcccccCC---CCcccccccccCCCC----CccccccCCccccccchhhH
Q 009614          142 KDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS---SQSVSFDEFLGTPGS----SSSFVQPLPSRQDEESRDLV  214 (531)
Q Consensus       142 ~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~lr~v~~---~~~~~~~~f~~~~~~----s~~~v~~l~~~~~~~~~~~~  214 (531)
                      .+|.+++|+--+.|.++..+-++.  +.++  ++.+.+   ++.+-..-|..+-++    +.. +|+++..-..      
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h--~agE--vw~las~P~d~~ilaT~yn~~s~s~vl~~aa-iw~ipe~~~~------  106 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFH--HAGE--VWDLASSPFDQRILATVYNDTSDSGVLTGAA-IWQIPEPLGQ------  106 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhc--CCcc--eehhhcCCCCCceEEEEEeccCCCcceeeEE-EEecccccCc------
Confidence            358899999888888888877765  4444  666655   556655555544443    222 5555443111      


Q ss_pred             Hhhhhhccccccccccce-eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEc
Q 009614          215 DAKRKVKRGWLKKLGAMA-RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS  293 (531)
Q Consensus       215 ~~~k~~~~~w~~~~~~~~-~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs  293 (531)
                           ....-+.....+. .+..++.|+.|.|++..+|+-. +..|.+|++.........+... .-.+|....++-+|+
T Consensus       107 -----S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss-~s~e~~~~ftsg~Ws  179 (370)
T KOG1007|consen  107 -----SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS-ESAEMRHSFTSGAWS  179 (370)
T ss_pred             -----cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc-ccccccceecccccC
Confidence                 0000011111111 2345778899999999988875 8899999998766532222111 123467788899999


Q ss_pred             c--CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC
Q 009614          294 L--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP  371 (531)
Q Consensus       294 p--dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (531)
                      |  +|+.+++. .|+++..||+++.++...+                                                 
T Consensus       180 pHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI-------------------------------------------------  209 (370)
T KOG1007|consen  180 PHHDGNQVATT-SDSTLQFWDLRTMKKNNSI-------------------------------------------------  209 (370)
T ss_pred             CCCccceEEEe-CCCcEEEEEccchhhhcch-------------------------------------------------
Confidence            9  78888776 5789999999877643222                                                 


Q ss_pred             ccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEee-cCCceEEEEEeeCCCCEEEEE
Q 009614          372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       372 ~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~l~~~~-h~~~V~sv~fsp~d~~~l~sg  447 (531)
                                  -..|...|.++.|+|+.  +|++|+.||.|+|||.+. ..++..+. |...|++|.|+|...+++++|
T Consensus       210 ------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  210 ------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             ------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence                        24577789999999987  999999999999999985 44566664 999999999999889999999


Q ss_pred             eCCCeEEEEeCCC------------------------------CeEEEecCCCCceEEEEEcc-CCCEEEEEeCCCcEEE
Q 009614          448 SIDGKVRIWEVRR------------------------------CQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRF  496 (531)
Q Consensus       448 s~Dg~I~Iwd~~~------------------------------~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~i  496 (531)
                      +.|..|.+|....                              +.+..+..|.+.|++++|+. |.-.+|+-+.||++.|
T Consensus       278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            9999999997532                              11224677899999999997 5556788999999988


Q ss_pred             EeCC
Q 009614          497 YDIK  500 (531)
Q Consensus       497 wd~~  500 (531)
                      =.+.
T Consensus       358 s~V~  361 (370)
T KOG1007|consen  358 SSVP  361 (370)
T ss_pred             ecCC
Confidence            7664

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.6e-19  Score=175.00  Aligned_cols=242  Identities=21%  Similarity=0.357  Sum_probs=191.3

Q ss_pred             HHhhhhhccccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc-ccccccceEEcccCCCEEEEEE
Q 009614          214 VDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKF  292 (531)
Q Consensus       214 ~~~~k~~~~~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~f  292 (531)
                      ...++...+.|.-++ ++..|.+.+..++|+|....|++++.+|.|++|++.+.... .......-+|.+|.++|.|++.
T Consensus       274 ~~~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v  352 (577)
T KOG0642|consen  274 SDLKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV  352 (577)
T ss_pred             hhhhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe
Confidence            345565667788777 88889999999999999999999999999999999542211 1234455679999999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614          293 SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (531)
Q Consensus       293 spdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (531)
                      .+++.++++|+-||+|+.|++....-  ....                                            +++ 
T Consensus       353 ~~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds--------------------------------------------~dp-  385 (577)
T KOG0642|consen  353 PSNGEHCYSGGIDGTIRCWNLPPNQD--PDDS--------------------------------------------YDP-  385 (577)
T ss_pred             cCCceEEEeeccCceeeeeccCCCCC--cccc--------------------------------------------cCc-
Confidence            99999999999999999999852210  0000                                            000 


Q ss_pred             cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE------------------------------
Q 009614          373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------------------------------  421 (531)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~------------------------------  421 (531)
                           ......+.||.+.|+.+++++.. .|++++.||+|++|+.....+                              
T Consensus       386 -----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~  460 (577)
T KOG0642|consen  386 -----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFR  460 (577)
T ss_pred             -----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcc
Confidence                 01245678999999999999987 999999999999998754332                              


Q ss_pred             --------------EEEee--------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEE
Q 009614          422 --------------LRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (531)
Q Consensus       422 --------------l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~  478 (531)
                                    +..+.        ....+..+.++| ...+.+++..|+.|+++|..++.++ ....|...++++++
T Consensus       461 ~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai  539 (577)
T KOG0642|consen  461 FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAI  539 (577)
T ss_pred             cccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceee
Confidence                          00110        113466788888 7789999999999999999999988 47889999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          479 CPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       479 spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .|+|.+|++++.|+.+++|.+....+++...
T Consensus       540 ~~ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  540 DPNGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             cCCCceEEeecCCceeehhhccchheeeccc
Confidence            9999999999999999999998777766544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=7.6e-18  Score=170.88  Aligned_cols=257  Identities=19%  Similarity=0.233  Sum_probs=196.2

Q ss_pred             eEEeeecCCeEEEEeCCCCccc-------c-----cccccc------------------eEEcccCCCEEEEEEccCCCE
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRE-------L-----SSLYTG------------------QEFLAHEGSILTMKFSLDGQY  298 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~-------~-----~~~~~~------------------~~l~~H~~~I~~l~fspdg~~  298 (531)
                      .+++++.|++|++|++......       +     +..+..                  ...-+..-.|.+++.+|+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            3789999999999998752110       0     000000                  011233457999999999999


Q ss_pred             EEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       299 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      ||+|..-|.++||++.+.+....+..++..+.|+.++...             +....+..++.+..+.+++....   .
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~-------------~~~kLLASasrdRlIHV~Dv~rn---y  537 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV-------------LTNKLLASASRDRLIHVYDVKRN---Y  537 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCch-------------hhhHhhhhccCCceEEEEecccc---c
Confidence            9999999999999999999888888888888777765432             22334456777888888887543   2


Q ss_pred             cceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeC
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      .++.++.+|...|+++.|.-+|   .+++++.|+.|.+=-.+...-...|.      ....++.|+..| ..+++++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQ  616 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQ  616 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEec
Confidence            3578899999999999998877   89999999987654333222222221      345689999999 8999999999


Q ss_pred             CCeEEEEeCCCCeEEEe----cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614          450 DGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG  525 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~  525 (531)
                      |..|+|||+.+++..+.    .+|.+....+...|.|.||++.+.|.++.|||..+|+++.+..        .|...+||
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--------GHsE~VTG  688 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--------GHSEAVTG  688 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--------Ccchheee
Confidence            99999999999988852    3456778889999999999999999999999999999987543        34577888


Q ss_pred             EEEee
Q 009614          526 FQVVK  530 (531)
Q Consensus       526 l~f~p  530 (531)
                      +.|.+
T Consensus       689 ~kF~n  693 (1080)
T KOG1408|consen  689 VKFLN  693 (1080)
T ss_pred             eeecc
Confidence            88864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=9.1e-19  Score=165.29  Aligned_cols=241  Identities=20%  Similarity=0.251  Sum_probs=188.2

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      .++.+|.+.|..++++.  ..+++++.|.+|+.|.+...        ..+++.+ .+.++.|.-+..+..+||||.+  |
T Consensus       103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~--------p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i  169 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP--------PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--I  169 (433)
T ss_pred             heeecccCceeeEEecc--cceEEecCCcceeeeeccCC--------cceeeec-cccccccccccccccccccCce--e
Confidence            35777888888888876  67788889999999998752        2233433 4567788887778889999875  9


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .|||......+..+.-....+.++.+.+.....+               ..+..+..+++|+.+......+.+.     .
T Consensus       170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL---------------as~~sDrsIvLyD~R~~~Pl~KVi~-----~  229 (433)
T KOG0268|consen  170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL---------------ASCASDRSIVLYDLRQASPLKKVIL-----T  229 (433)
T ss_pred             eecccccCCccceeecCCCceeEEecCCCcchhe---------------eeeccCCceEEEecccCCccceeee-----e
Confidence            9999988888888877777677777766554433               3455777889999887554433333     2


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      ...+.|+|+|.+ .+++|+.|..+..||++.- .++..+. |.+.|.+|.|+| .|+-|++||.|.+|+||.++.+..-.
T Consensus       230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRd  308 (433)
T KOG0268|consen  230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRD  308 (433)
T ss_pred             ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchh
Confidence            345789999977 8999999999999999864 4555554 999999999999 99999999999999999999876543


Q ss_pred             --ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          466 --YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       466 --~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                        ...--..|.++.|+.|.+++++|+.|+.|++|.....+
T Consensus       309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence              33334579999999999999999999999999876443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=3.7e-18  Score=162.83  Aligned_cols=197  Identities=26%  Similarity=0.396  Sum_probs=154.0

Q ss_pred             CCCeEEe---eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccccc
Q 009614          246 GDHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDG  321 (531)
Q Consensus       246 dg~~las---gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~  321 (531)
                      +..++|.   ++..|-..|..+.+..+.-.. +.  .+.||+++|..++|+| +.+.||||++|.+|.||++..+.....
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~-~P--~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~  119 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDAS-YP--LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD  119 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCC-CC--CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC
Confidence            3345543   344456666655543322111 11  3679999999999999 677899999999999999976553322


Q ss_pred             eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-
Q 009614          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (531)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-  400 (531)
                      +                                                       ..|+..+.+|...|.-++|+|.. 
T Consensus       120 l-------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~  144 (472)
T KOG0303|consen  120 L-------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAP  144 (472)
T ss_pred             c-------------------------------------------------------ccceEEEeecceeEEEEeecccch
Confidence            2                                                       24688899999999999999976 


Q ss_pred             -eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCC-ceEEEE
Q 009614          401 -FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE-IVSAVC  477 (531)
Q Consensus       401 -~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~-~~~~~-~v~~v~  477 (531)
                       .|++++.|.+|.+|++.++..+.++.|.+.|+++.|+. +|.+|++.+.|.+|||||.++++++.- ..|.+ .-..+.
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI  223 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence             89999999999999999999999999999999999999 999999999999999999999999853 35543 345677


Q ss_pred             EccCCCEEEEEeC---CCcEEEEeCCC
Q 009614          478 YCPDGKGGIVGTM---TGNCRFYDIKD  501 (531)
Q Consensus       478 ~spdg~~l~sgs~---dg~I~iwd~~~  501 (531)
                      |-.+|..+.+|..   +..+-+||..+
T Consensus       224 fl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  224 FLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             EeccCceeeeccccccccceeccCccc
Confidence            8888886555543   56688888654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.2e-16  Score=162.05  Aligned_cols=242  Identities=17%  Similarity=0.230  Sum_probs=188.0

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      ..+.+++++...+.||.+-.+|.|-||++..      ..+....+.+|. ..|-+++|++ +..|.+.+.+|.|.-||+.
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence            4567899999999999999999999999985      334444666664 6899999995 5578899999999999999


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      +++....+......+..++..+.....  ++.              +.++-++.+....-.+.  ....+...++.|.++
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l--~Ig--------------cddGvl~~~s~~p~~I~--~~r~l~rq~sRvLsl  160 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTIL--AIG--------------CDDGVLYDFSIGPDKIT--YKRSLMRQKSRVLSL  160 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceE--Eee--------------cCCceEEEEecCCceEE--EEeecccccceEEEE
Confidence            999988888777777776666554322  222              23332222222211111  122334457899999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      +|+|++ .+++|+.||.|++||+.++..+....         .+.-|+++.|-.  ...|++|..-|+|.+||...+.++
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchh
Confidence            999999 79999999999999999998877332         334578888874  568999999999999999999988


Q ss_pred             E-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          465 D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       465 ~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      + ...|...|.+++..+++.++++++.|+.|--|...+++-
T Consensus       239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            5 777889999999999999999999999999998877654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.5e-17  Score=154.69  Aligned_cols=220  Identities=15%  Similarity=0.236  Sum_probs=159.1

Q ss_pred             cccceeeeccccceeeeCCCC--eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC
Q 009614          228 LGAMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~--~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      ++.+-.|.+.++++.|.++-.  .|++|+.||.|.+|+..       .+.....+++|.+.|+.++.+|.|++-++.+.|
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D  148 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD  148 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-------CeEEeeeecccccccceeEecCCCceEEEEcCC
Confidence            456667788888999999876  89999999999999988       445567899999999999999999999999999


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.+++||+.+|+.....+..... ..+.|.+.....++.                 ....+-+|......     +....
T Consensus       149 ~~lr~WNLV~Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~-----------------~~~~i~i~q~d~A~-----v~~~i  205 (362)
T KOG0294|consen  149 QVLRTWNLVRGRVAFVLNLKNKA-TLVSWSPQGDHFVVS-----------------GRNKIDIYQLDNAS-----VFREI  205 (362)
T ss_pred             ceeeeehhhcCccceeeccCCcc-eeeEEcCCCCEEEEE-----------------eccEEEEEecccHh-----Hhhhh
Confidence            99999999999866555543332 224444322211111                 01112222222111     11111


Q ss_pred             cCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEE--eeCCCCEEEEEeCCCeEEEEeCCCC-
Q 009614          386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF--NPVDDNYFISGSIDGKVRIWEVRRC-  461 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~f--sp~d~~~l~sgs~Dg~I~Iwd~~~~-  461 (531)
                      .....+.++.|...+.|++|..|+.|++||.....++..+. |...|-.+.+  +| ++.||++++.||.|+|||++.. 
T Consensus       206 ~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  206 ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEccccc
Confidence            12356888888877799999999999999999988888775 9999999985  34 6789999999999999999876 


Q ss_pred             ----eEEEecCCCCceEEEEE
Q 009614          462 ----QVVDYTDIREIVSAVCY  478 (531)
Q Consensus       462 ----~~~~~~~~~~~v~~v~~  478 (531)
                          +.+-.......++++..
T Consensus       285 k~~~~~l~e~n~~~RltCl~~  305 (362)
T KOG0294|consen  285 KKRPTLLAELNTNVRLTCLRV  305 (362)
T ss_pred             cCCcceeEEeecCCccceeee
Confidence                23333333555555544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.77  E-value=9.1e-18  Score=154.56  Aligned_cols=207  Identities=20%  Similarity=0.322  Sum_probs=155.7

Q ss_pred             cccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccccc--e-------------ecCCCCCeeEEEeecCCcceee
Q 009614          281 LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDG--F-------------DVQDTDPSCLYFTINHLSQLIP  344 (531)
Q Consensus       281 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~  344 (531)
                      ..|.+.|+++...+ .|+|+++|+.||.|.+||+++......  +             ..+...+..+.|-|..      
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D------  113 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID------  113 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec------
Confidence            45899999999988 799999999999999999976542110  0             0111111122222211      


Q ss_pred             eeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCe
Q 009614          345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDR  420 (531)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~  420 (531)
                               .-...+.+-|..+.+|+..+.+.    ... ..-.+.|.+-+|+|-.    ++++|..|-.|++-|+.+|.
T Consensus       114 ---------tGmFtssSFDhtlKVWDtnTlQ~----a~~-F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  114 ---------TGMFTSSSFDHTLKVWDTNTLQE----AVD-FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             ---------CceeecccccceEEEeeccccee----eEE-eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence                     22235667788899999877542    122 2245678888888843    78888999999999999999


Q ss_pred             EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC-e---EE-----------E-ecCCCCceEEEEEccCCC
Q 009614          421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-Q---VV-----------D-YTDIREIVSAVCYCPDGK  483 (531)
Q Consensus       421 ~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~-~---~~-----------~-~~~~~~~v~~v~~spdg~  483 (531)
                      +-+++. |.+.|.+|.|+|...-.|++|+.||.|++||++.. -   ++           + -..|.+.|..+||+.||.
T Consensus       180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence            999996 99999999999977778899999999999999853 1   11           1 345777899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          484 GGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ++++.+.|..+++|+..+|+-...
T Consensus       260 ~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             hhhhccCccceEEeecccCccccc
Confidence            999999999999999998875443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.6e-17  Score=173.47  Aligned_cols=202  Identities=18%  Similarity=0.326  Sum_probs=163.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      ++...-....++|+-+|+++|.|+.|-.|++-+..+...+       ..+++|.++|.+|.|+|++.+||+.+.||.|+|
T Consensus        92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------eeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            4444556667899999999999999999999999866544       358999999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |++.++.....+.......                                                     . ......
T Consensus       165 w~~~~~~~~~tl~~v~k~n-----------------------------------------------------~-~~~s~i  190 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDN-----------------------------------------------------E-FILSRI  190 (933)
T ss_pred             EEcccchhhhhcccCCccc-----------------------------------------------------c-ccccce
Confidence            9999887766553221100                                                     0 001445


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      +..++|+|++ .|+..+.|+.|++|+..+......+.   +...+.+++|+| .|.|||+++.||.|.|||+.+..   .
T Consensus       191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~---~  266 (933)
T KOG1274|consen  191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHE---R  266 (933)
T ss_pred             eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccch---h
Confidence            7789999997 99999999999999999998888875   445599999999 89999999999999999999822   2


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw  497 (531)
                      ......|.+++|.|+++.|-.-...|...+|
T Consensus       267 ~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  267 HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            4456789999999999877666666655444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.2e-17  Score=166.84  Aligned_cols=242  Identities=19%  Similarity=0.367  Sum_probs=186.7

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccc-
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK-  356 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  356 (531)
                      ..++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+... ..+.|+.|.+.....++++......+.... 
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            357899999999999999999999999999999999999999888764 468899999888877777665544111000 


Q ss_pred             -------------ccc----cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC---CcEEEEE
Q 009614          357 -------------SLR----KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQ  415 (531)
Q Consensus       357 -------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D---g~V~lwd  415 (531)
                                   ...    ...+.+++.|.....+....-++....|...|..|.|+..| +|++...+   ..|.|++
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence                         011    22345667777665444445577778899999999999999 88887653   5699999


Q ss_pred             CCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCc
Q 009614          416 VGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGN  493 (531)
Q Consensus       416 l~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~  493 (531)
                      +.....+..|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.+++ +......|..++.+|.|.-|++|+.|+.
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             cccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence            98887777774 678899999999 6667776665 589999999987774 6666778999999999999999999999


Q ss_pred             EEEEeCCCCe-EEEEeeeeecccccCCCceeeeEEEee
Q 009614          494 CRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       494 I~iwd~~~~~-l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +..||+.-+. ..++        -+.|.+.+++++|.+
T Consensus       631 ~~WfDldlsskPyk~--------lr~H~~avr~Va~H~  660 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKT--------LRLHEKAVRSVAFHK  660 (733)
T ss_pred             eEEEEcccCcchhHH--------hhhhhhhhhhhhhcc
Confidence            9999997543 2221        234456777777754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-17  Score=172.72  Aligned_cols=195  Identities=17%  Similarity=0.318  Sum_probs=165.5

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      .+++.++.|++.+.|+..|.|-++++..+-..-+-.    .-.+|.++|++++...-++.+++++.+|.+++||..+...
T Consensus       452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             EEEEEeccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            468899999999999999999999998654332210    1258999999999998899999999999999999876653


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      +..+..                                                               ...+.++..+.
T Consensus       528 ~~~l~l---------------------------------------------------------------~~~~~~iv~hr  544 (910)
T KOG1539|consen  528 KKSLRL---------------------------------------------------------------GSSITGIVYHR  544 (910)
T ss_pred             eeeecc---------------------------------------------------------------CCCcceeeeee
Confidence            332211                                                               23455666666


Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEE
Q 009614          399 NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV  476 (531)
Q Consensus       399 ~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v  476 (531)
                      .. .++.+..|-.|+++|+.+.+.++.|. |.+.|+.++|+| |+++|++++.|++|++||+.++.++.......+.+++
T Consensus       545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl  623 (910)
T KOG1539|consen  545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL  623 (910)
T ss_pred             hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee
Confidence            55 88999999999999999999999996 999999999999 9999999999999999999999999988889999999


Q ss_pred             EEccCCCEEEEEeCC-CcEEEEeCCC
Q 009614          477 CYCPDGKGGIVGTMT-GNCRFYDIKD  501 (531)
Q Consensus       477 ~~spdg~~l~sgs~d-g~I~iwd~~~  501 (531)
                      .|+|+|.+||+...| .-|++|.-.+
T Consensus       624 s~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             EECCCCCEEEEEEecCceEEEEEchh
Confidence            999999999999998 4599997543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.7e-17  Score=149.17  Aligned_cols=225  Identities=16%  Similarity=0.150  Sum_probs=168.5

Q ss_pred             ccccccceeeeccccceeeeC--CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEE
Q 009614          225 LKKLGAMARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLA  300 (531)
Q Consensus       225 ~~~~~~~~~~~~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~La  300 (531)
                      .+.+..+.+|.+++-.++|..  .|.+||+++.||.|.||....+...     ...+...|...|++|+|.|  .|-.||
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-----k~~e~~~h~~SVNsV~wapheygl~La  120 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-----KAYEHAAHSASVNSVAWAPHEYGLLLA  120 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----hhhhhhhhcccceeecccccccceEEE
Confidence            345667888999999988877  8999999999999999998866322     2345778999999999988  467899


Q ss_pred             EEeCCCcEEEEEcccC-c--cccceecCCCCCeeEEEeecCCcc-eeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          301 SGGEDGTVRVWKVIEH-E--RLDGFDVQDTDPSCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      .|+.||.|.|.+.... .  ..+....+...+..+.+.+..... ++.-.   ......++++++.|..+.+|....-..
T Consensus       121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~---~~~~~krlvSgGcDn~VkiW~~~~~~w  197 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG---PAAKVKRLVSGGCDNLVKIWKFDSDSW  197 (299)
T ss_pred             EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC---cccccceeeccCCccceeeeecCCcch
Confidence            9999999999998765 1  223345566667777777664321 11111   111134567889999999997655321


Q ss_pred             cCcceeEeecCCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCC--eEEEEe--ecCCceEEEEEeeCCCCEEEEE
Q 009614          377 LEKPLHEFQGHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID--RCLRVF--SHNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       377 ~~~~~~~~~~h~~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~~~--~~l~~~--~h~~~V~sv~fsp~d~~~l~sg  447 (531)
                        ..-+.+.+|.+.|.+++|.|.-     +|++++.||+|.||..+..  +...++  ..+..++.+.|++ .+++|+++
T Consensus       198 --~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs  274 (299)
T KOG1332|consen  198 --KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVS  274 (299)
T ss_pred             --hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEe
Confidence              2234589999999999999963     8999999999999987632  222222  1567899999999 99999999


Q ss_pred             eCCCeEEEEeCCC
Q 009614          448 SIDGKVRIWEVRR  460 (531)
Q Consensus       448 s~Dg~I~Iwd~~~  460 (531)
                      +.|++|.+|.-..
T Consensus       275 ~GdNkvtlwke~~  287 (299)
T KOG1332|consen  275 GGDNKVTLWKENV  287 (299)
T ss_pred             cCCcEEEEEEeCC
Confidence            9999999997553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=6.5e-17  Score=150.21  Aligned_cols=224  Identities=17%  Similarity=0.226  Sum_probs=165.1

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      .++.+.+|.+ ...+++|+.||.|+.+|+......        .+..|..+|.||.+++-...+++||.|++|++||..+
T Consensus        55 ~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   55 APLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             CceeeeeccC-CceEEEeccCceEEEEEecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            3444567776 567899999999999999866543        3667999999999999888999999999999999986


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ......+....              .+.+.+...     ..++.+..+..+.+|+.+......  ...-..-...+.|++
T Consensus       126 ~~~~~~~d~~k--------------kVy~~~v~g-----~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~  184 (323)
T KOG1036|consen  126 KVVVGTFDQGK--------------KVYCMDVSG-----NRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVA  184 (323)
T ss_pred             cccccccccCc--------------eEEEEeccC-----CEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEE
Confidence            44333332221              222222221     223456677788889887765432  111122345689999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCC----eEEEEee-c---------CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-H---------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~----~~l~~~~-h---------~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .-|++ -++.++-||.|.+=.+...    .....|+ |         -.+|++|+|+| -...|++|+.||.|.+||+.+
T Consensus       185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcc
Confidence            99987 8888899999988776655    2222332 2         24799999999 788999999999999999999


Q ss_pred             CeEE-EecCCCCceEEEEEccCCCEEEEEeC
Q 009614          461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       461 ~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                      .+.+ .+......|.+++|+.||..||+|+.
T Consensus       264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            8776 46667788999999999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.76  E-value=1.8e-16  Score=155.50  Aligned_cols=277  Identities=18%  Similarity=0.236  Sum_probs=201.5

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCC--------eEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMR--------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYL  299 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg--------~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~L  299 (531)
                      ...+|.+.+.|++++|+.-.+++|-.-|        .++|||..+       +...+.+-.....|.|++|++  .|.+|
T Consensus        99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-------L~TL~V~g~f~~GV~~vaFsk~~~G~~l  171 (626)
T KOG2106|consen   99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-------LSTLHVIGFFDRGVTCVAFSKINGGSLL  171 (626)
T ss_pred             cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-------ceeeeeeccccccceeeeecccCCCceE
Confidence            4666778888999999999999876655        499999663       223334555677899999998  45566


Q ss_pred             EEE--eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeee--------eccccccc----------------
Q 009614          300 ASG--GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--------DVDKEKID----------------  353 (531)
Q Consensus       300 asg--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----------------  353 (531)
                      +..  +.+..+.+||.+.+............+....|.|...+.++..        ....+.+.                
T Consensus       172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~  251 (626)
T KOG2106|consen  172 CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC  251 (626)
T ss_pred             EEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence            554  3466789999988877766665555555555555444333322        22111110                


Q ss_pred             -----cccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCC---------
Q 009614          354 -----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID---------  419 (531)
Q Consensus       354 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~---------  419 (531)
                           .-..+++..++.+.+|+....++.    +....|.+.|.+|+...+|.|++|+.|..|..||-.-.         
T Consensus       252 v~F~engdviTgDS~G~i~Iw~~~~~~~~----k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe  327 (626)
T KOG2106|consen  252 VTFLENGDVITGDSGGNILIWSKGTNRIS----KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPE  327 (626)
T ss_pred             EEEcCCCCEEeecCCceEEEEeCCCceEE----eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCch
Confidence                 112367888999999999776543    34448999999999999998999999999999983210         


Q ss_pred             --------------------------------eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          420 --------------------------------RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       420 --------------------------------~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                                                      -.+.++.|....+.++.+| +.+.+++++.|+.+++|+  ..++.-..
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~  404 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK  404 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEE
Confidence                                            0111234778889999999 899999999999999999  55555455


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ....++.++.|+|.| .++.|+..|...+.|.++..+++..        +. ...|+.+.|+|
T Consensus       405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~--------~d-~~~ls~v~ysp  457 (626)
T KOG2106|consen  405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH--------TD-NEQLSVVRYSP  457 (626)
T ss_pred             EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE--------ec-CCceEEEEEcC
Confidence            567789999999999 9999999999999999986665421        11 46788888887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.75  E-value=5.9e-16  Score=153.11  Aligned_cols=192  Identities=14%  Similarity=0.219  Sum_probs=144.3

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceecC
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      +..+++++.|+.|++||..+..       ..+.+..|. .+.+++|+|+|+.+ ++++.++.|++||+.+++....    
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----   68 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE-------VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT----   68 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc-------eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe----
Confidence            3567889999999999987543       223455444 46789999999976 5677899999999876643211    


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-  403 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-  403 (531)
                                                                                +..+. .+..++|+|++ .++ 
T Consensus        69 ----------------------------------------------------------~~~~~-~~~~~~~~~~g~~l~~   89 (300)
T TIGR03866        69 ----------------------------------------------------------LPSGP-DPELFALHPNGKILYI   89 (300)
T ss_pred             ----------------------------------------------------------ccCCC-CccEEEECCCCCEEEE
Confidence                                                                      11111 24567899988 554 


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC-eEEEEeCCCCeEEEecCCCCceEEEEEccCC
Q 009614          404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVDYTDIREIVSAVCYCPDG  482 (531)
Q Consensus       404 s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg-~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg  482 (531)
                      +++.++.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.++ .+.+||..+++..........+..++|+|+|
T Consensus        90 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  168 (300)
T TIGR03866        90 ANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG  168 (300)
T ss_pred             EcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence            45668999999999998888887666688999999 999999888765 5778899988776543344556789999999


Q ss_pred             CEEEEEe-CCCcEEEEeCCCCeEEEEeee
Q 009614          483 KGGIVGT-MTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       483 ~~l~sgs-~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ++|++++ .+|.|++||+.+++.+..+..
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~  197 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVIKKITF  197 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence            9886554 689999999999987766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.75  E-value=3.8e-17  Score=165.81  Aligned_cols=289  Identities=17%  Similarity=0.189  Sum_probs=193.4

Q ss_pred             ccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       225 ~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      +...+.+.+|.+.|..++|+|.|.++++.+.|.+-|++-.-..+.+...+-   .-+-|...++|++|-+....+++|.+
T Consensus       351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia---RPQiHGyDl~c~~~vn~~~~FVSgAd  427 (764)
T KOG1063|consen  351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA---RPQIHGYDLTCLSFVNEDLQFVSGAD  427 (764)
T ss_pred             eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec---ccccccccceeeehccCCceeeeccc
Confidence            344556888999999999999999999999999999986653333322221   22447788999999886668999999


Q ss_pred             CCcEEEEEcccCcc--ccceec-----CCCCCeeEEEeecCCcceeeeeccccccccccccccCC-----------CceE
Q 009614          305 DGTVRVWKVIEHER--LDGFDV-----QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-----------DLTC  366 (531)
Q Consensus       305 Dg~I~iWd~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~  366 (531)
                      .+.+|+++....-.  +..+..     ....+.....        -++.........-....+..           ....
T Consensus       428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V--------paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV--------PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeeeecCcHHHHHHHHHHhCccccCchhccccccc--------ccccccCCCCcccccccccccceeeecccccCchh
Confidence            99999998743210  000000     0000000000        00000000000000000000           0000


Q ss_pred             EEeCCcccc----ccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeEEEEe-ecCCceEEEE
Q 009614          367 VVLPPKVFR----LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVF-SHNNYVTSVA  435 (531)
Q Consensus       367 ~~~~~~~~~----~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D-----g~V~lwdl~~~~~l~~~-~h~~~V~sv~  435 (531)
                      ..-++..-.    ..-..++.+.||...|.+++.+|++ ++++++..     ..|+||+..+-..++.+ .|.-.|+.|+
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~  579 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA  579 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence            000110000    0113467789999999999999999 88888754     34999999887777755 4999999999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEEEEe
Q 009614          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN--QLYQQN  508 (531)
Q Consensus       436 fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~--~l~~~~  508 (531)
                      |+| |++||++.+.|.++.+|........     ....|...|.+..|+|++.+++|++.|.+|++|.....  +.+.++
T Consensus       580 FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  580 FSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             ECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence            999 9999999999999999998654322     36789999999999999999999999999999999887  443332


Q ss_pred             eeeecccccCCCceeeeEEEeeC
Q 009614          509 QICLQGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       509 ~~~~~~~kk~~~~~It~l~f~p~  531 (531)
                      .      --..+..+|++++.|.
T Consensus       659 a------~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  659 A------CLKFSLAVTAVAYLPV  675 (764)
T ss_pred             c------hhccCCceeeEEeecc
Confidence            1      1223468888888763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=2.7e-17  Score=157.69  Aligned_cols=242  Identities=25%  Similarity=0.407  Sum_probs=171.4

Q ss_pred             ccccceeeeCCCC-eEEeeecCCeEEEEeCCCCccccc--ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       236 ~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      ..+.++.|.++.. .+|+|+.|..|++|.+......-.  ...-...+..|..+|+++.|+|+|.+||||+++|.|.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            4556788888887 999999999999998875543321  2223346788999999999999999999999999999998


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      ...-..   +.   ... +.             ....                      ..    -.....+.+|...|.
T Consensus        94 ~~~~~~---~~---~d~-e~-------------~~~k----------------------e~----w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   94 QGDVRI---FD---ADT-EA-------------DLNK----------------------EK----WVVKKVLRGHRDDIY  127 (434)
T ss_pred             ecCcCC---cc---ccc-hh-------------hhCc----------------------cc----eEEEEEecccccchh
Confidence            643110   00   000 00             0000                      00    012455678999999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--
Q 009614          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--  468 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~--  468 (531)
                      .++|+|++ .+++++.|..+++||+..|+.+..+. |..+|..++|.| -.+++++-+.|.+.+++.+...+++....  
T Consensus       128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~  206 (434)
T KOG1009|consen  128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD  206 (434)
T ss_pred             hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence            99999999 99999999999999999999999886 999999999999 89999999999988888876544332111  


Q ss_pred             ------------------CCC----ceEEEEEccCCCEEEEEeC----CCcE-----EEEeCCCCeEEEEeeeeeccccc
Q 009614          469 ------------------IRE----IVSAVCYCPDGKGGIVGTM----TGNC-----RFYDIKDNQLYQQNQICLQGKKK  517 (531)
Q Consensus       469 ------------------~~~----~v~~v~~spdg~~l~sgs~----dg~I-----~iwd~~~~~l~~~~~~~~~~~kk  517 (531)
                                        |.+    -...++|+|||.+|++...    .+.+     ++|+   ++.+.+.-.++    .
T Consensus       207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfs---rk~l~rP~~~l----p  279 (434)
T KOG1009|consen  207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS---RKDLKRPAARL----P  279 (434)
T ss_pred             EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeec---cccccCceeec----C
Confidence                              111    1345789999999988643    2222     3333   33332222222    2


Q ss_pred             CCCceeeeEEEeeC
Q 009614          518 LPGKRITGFQVVKI  531 (531)
Q Consensus       518 ~~~~~It~l~f~p~  531 (531)
                      .+.+....+.|+|+
T Consensus       280 ~~~k~~lavr~~pV  293 (434)
T KOG1009|consen  280 SPKKPALAVRFSPV  293 (434)
T ss_pred             CCCcceEEEEeeee
Confidence            34567888888885

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=7.1e-17  Score=162.73  Aligned_cols=254  Identities=14%  Similarity=0.195  Sum_probs=163.7

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+..++|.|||..++.+. +.++.|||...+.       ..+++++|++.|+|++|+.||+.+|+|+.|+.|.+|+-+-.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            566799999999988774 4679999998554       34579999999999999999999999999999999986433


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeec-------cccccc------cccccccCCCceEEEeCCccccc-----cC
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDV-------DKEKID------KTKSLRKSSDLTCVVLPPKVFRL-----LE  378 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~  378 (531)
                      ..++  ..+...+.|+.|.|-......+.-.       ......      .....+.+.|+.+.........+     .+
T Consensus        86 G~Lk--YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   86 GILK--YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             ceee--eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence            3221  2345667777776655433222111       111100      01112223344444333222111     12


Q ss_pred             cceeEeec---CCCCeeEEEEcCCC------eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC
Q 009614          379 KPLHEFQG---HSSEVLDLSWSKNG------FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       379 ~~~~~~~~---h~~~I~~l~~sp~~------~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      .+...+..   .+.+|.+++|+|+.      .++......++.+|.+.....-+.-.-.-...|+++.| +|.|++.|+.
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGs  242 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGGS  242 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEccC
Confidence            33333444   34456666666663      45555555556555553322211222233445666776 8889999999


Q ss_pred             CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      |+.+.+|-...-.+-.......+|+.++..|++++++.|+.||+|.-|++-.
T Consensus       243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            9999998665544445666778999999999999999999999999998753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.74  E-value=4.6e-17  Score=163.82  Aligned_cols=255  Identities=16%  Similarity=0.240  Sum_probs=167.3

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCC
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG  306 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg  306 (531)
                      +....+|...|-.+.|-|....|++++.|.++++||++.....     -...+.||++.|.+++|.|. ...|++|+.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg  167 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG  167 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-----cceeecccccccchhhhccCCCcceeeccCCC
Confidence            3344567777888899998888999999999999999865432     22357899999999999994 55889999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|.|||+..... ..+.....   ++.-..+.                          .     +.-.....+.+.....
T Consensus       168 ~illWD~R~n~~-d~~e~~~~---~~~~~~n~--------------------------~-----ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  168 EILLWDCRCNGV-DALEEFDN---RIYGRHNT--------------------------A-----PTPSKPLKKRIRKWKA  212 (720)
T ss_pred             cEEEEEEeccch-hhHHHHhh---hhhccccC--------------------------C-----CCCCchhhcccccccc
Confidence            999999865441 11110000   00000000                          0     0000000122333344


Q ss_pred             CCCCeeE---EEEcCCC-eEEEEeC-CCcEEEEECCCCeEEEEee---------c---CCceEEEEEeeCCCCEEEEEeC
Q 009614          387 HSSEVLD---LSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS---------H---NNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       387 h~~~I~~---l~~sp~~-~l~s~s~-Dg~V~lwdl~~~~~l~~~~---------h---~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      |...|.+   +.+..|. .|++++. |+.|++||++...+.....         |   ...++++.... .|.+|.+.+.
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCt  291 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCT  291 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEec
Confidence            5554444   4444455 8998887 9999999999766543321         3   34577888877 7788888888


Q ss_pred             CCeEEEEeCCCCeEEE---ecCCCC--ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceee
Q 009614          450 DGKVRIWEVRRCQVVD---YTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT  524 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~---~~~~~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It  524 (531)
                      |+.|+.|++.+..+-.   +.++..  --..-+.+||+.+|++|+.|+..++|.+.+.++-.   ..    ..-+...+|
T Consensus       292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~---~~----l~Ght~eVt  364 (720)
T KOG0321|consen  292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP---AL----LLGHTREVT  364 (720)
T ss_pred             CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh---hh----hhCcceEEE
Confidence            9999999998754332   222211  12334678999999999999999999998765421   11    233456778


Q ss_pred             eEEEee
Q 009614          525 GFQVVK  530 (531)
Q Consensus       525 ~l~f~p  530 (531)
                      .++++|
T Consensus       365 ~V~w~p  370 (720)
T KOG0321|consen  365 TVRWLP  370 (720)
T ss_pred             EEeecc
Confidence            888776

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.74  E-value=4e-17  Score=159.83  Aligned_cols=234  Identities=18%  Similarity=0.251  Sum_probs=197.3

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      -+.++.+.|||+.|++|+.-.++.|||+......+.     .++....-+.++++.+||.+..+++..||.|.|||+.+.
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence            345678999999999999999999999985443222     233334456888999999999999999999999999999


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec--CCCCeeEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HSSEVLDL  394 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~l  394 (531)
                      ..+..++.+.....|+.+..+.                ..+.+++.|..+..|+.+..+.       +..  ....|.+|
T Consensus       542 ~~VrqfqGhtDGascIdis~dG----------------tklWTGGlDntvRcWDlregrq-------lqqhdF~SQIfSL  598 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDG----------------TKLWTGGLDNTVRCWDLREGRQ-------LQQHDFSSQIFSL  598 (705)
T ss_pred             eeeecccCCCCCceeEEecCCC----------------ceeecCCCccceeehhhhhhhh-------hhhhhhhhhheec
Confidence            9999999999999998876544                3345778888999999876432       222  35679999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV  473 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v  473 (531)
                      ..+|++ .|+.|-..+.|.|......+....-.|...|.++.|.+ .|++|++.+.|.-+..|...-+..+-.......|
T Consensus       599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsV  677 (705)
T KOG0639|consen  599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV  677 (705)
T ss_pred             ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcc
Confidence            999999 99999999999999887776666667999999999999 9999999999999999999988887777778899


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          474 SAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      .+...+-|.+|||+|+.|....+|.+
T Consensus       678 lsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  678 LSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999999999999888875

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=4.8e-17  Score=157.58  Aligned_cols=261  Identities=17%  Similarity=0.169  Sum_probs=183.3

Q ss_pred             ccccCCCCcccccccccCCCCCccccccCCccccccchhhHH-hhhhhccccccccccceeeeccccceeeeCCC-CeEE
Q 009614          174 LQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVD-AKRKVKRGWLKKLGAMARIIDRHGSATLKPGD-HELT  251 (531)
Q Consensus       174 lr~v~~~~~~~~~~f~~~~~~s~~~v~~l~~~~~~~~~~~~~-~~k~~~~~w~~~~~~~~~~~~~~~s~~fspdg-~~la  251 (531)
                      ...-+.|..+++..|+..+-     ||.|--+....+.-..+ ...++++.-.++.....+|.+.+-+++|+..- ..||
T Consensus       186 ~~~~~~gNyvAiGtmdp~Ie-----IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa  260 (463)
T KOG0270|consen  186 SKSGGAGNYVAIGTMDPEIE-----IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA  260 (463)
T ss_pred             CCCCCCcceEEEeccCceeE-----EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE
Confidence            34555688899999987766     77766555443332221 11112222222344566788888888877755 4678


Q ss_pred             eeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCe
Q 009614          252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS  330 (531)
Q Consensus       252 sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~  330 (531)
                      +|+.|.+|++||+.+++.       .+++..|.+.|.+++|+| ...+|++|+.|++|.+.|.+........-.....+-
T Consensus       261 SgsaD~TV~lWD~~~g~p-------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE  333 (463)
T KOG0270|consen  261 SGSADKTVKLWDVDTGKP-------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE  333 (463)
T ss_pred             ecCCCceEEEEEcCCCCc-------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence            899999999999996553       345778999999999999 577999999999999999874222111111112222


Q ss_pred             eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCC
Q 009614          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD  408 (531)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~D  408 (531)
                      .+.|.+...               ...+.+..++.++-++.+..   ++++.+++.|.++|.+|++++..  +|++++.|
T Consensus       334 kv~w~~~se---------------~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  334 KVAWDPHSE---------------NSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             EEEecCCCc---------------eeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence            233322221               22345677888888887764   38899999999999999999875  99999999


Q ss_pred             CcEEEEECCCCeEEEEeec---CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          409 KTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h---~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      +.|++|++.......+..|   -+...|.++.|....+++.|+..+.++|||+.+...+
T Consensus       396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            9999999986655444332   2447888899966678888999999999999887654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=2.5e-16  Score=150.47  Aligned_cols=213  Identities=18%  Similarity=0.256  Sum_probs=167.2

Q ss_pred             cccceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCC
Q 009614          228 LGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED  305 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D  305 (531)
                      ...+.+|...+-.+.|.| ++..||+|+.|-+|.||++..............++.||...|-.|+|+|. .+.|+|++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            345677888888899999 45667899999999999998776655444556789999999999999994 5689999999


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      .+|.|||+.+++.+                                                              .++.
T Consensus       154 n~v~iWnv~tgeal--------------------------------------------------------------i~l~  171 (472)
T KOG0303|consen  154 NTVSIWNVGTGEAL--------------------------------------------------------------ITLD  171 (472)
T ss_pred             ceEEEEeccCCcee--------------------------------------------------------------eecC
Confidence            99999999988742                                                              2233


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCC-ceEEEEEeeCCCCEEEEEe---CCCeEEEEeCC
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNN-YVTSVAFNPVDDNYFISGS---IDGKVRIWEVR  459 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~-~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~  459 (531)
                       |...|.++.|+.+| +|++.+.|+.|||||.++++.+..- .|.+ .-..+.|-- ++.++-+|-   .+..+-+||..
T Consensus       172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcc
Confidence             89999999999999 9999999999999999999998876 3543 334555665 777555553   46789999987


Q ss_pred             CCe---EEEecCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeE
Q 009614          460 RCQ---VVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQL  504 (531)
Q Consensus       460 ~~~---~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~l  504 (531)
                      +-.   ...-.+....|.---|.||.+.+..++ .|+.||.|.+.....
T Consensus       250 nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  250 NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             cccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            643   224455566777677888888876544 599999999987663

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=2e-16  Score=164.73  Aligned_cols=250  Identities=20%  Similarity=0.204  Sum_probs=175.2

Q ss_pred             ccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC--CEEEEEeCCCcEEEEE
Q 009614          236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWK  312 (531)
Q Consensus       236 ~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~iWd  312 (531)
                      ..+.+++|+|... ++|.|..+|.|.+||+.......... .......|..+|+.+.|..+-  .-+++++.||.|..|+
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            4556788998654 56778899999999999776542111 111245689999999997643  4599999999999998


Q ss_pred             cccCccccceecCC------------CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC--
Q 009614          313 VIEHERLDGFDVQD------------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE--  378 (531)
Q Consensus       313 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  378 (531)
                      ++............            .....+.|.+..               ....+.++..|.++.-.........  
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~---------------p~~FiVGTe~G~v~~~~r~g~~~~~~~  386 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD---------------PNHFIVGTEEGKVYKGCRKGYTPAPEV  386 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCC---------------CceEEEEcCCcEEEEEeccCCcccccc
Confidence            76544322111110            112222222222               2223455555555553333222222  


Q ss_pred             --cceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECC-CCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          379 --KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       379 --~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~-~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                        +++..+..|.+.|..+.++|-+  .+++++ |.+|+||... ...++..+. +..+|++++|+|.....|+++..||.
T Consensus       387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence              4566778899999999999988  445555 9999999987 556665554 77889999999988899999999999


Q ss_pred             EEEEeCCCCeE--E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          453 VRIWEVRRCQV--V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       453 I~Iwd~~~~~~--~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      |.|||+.....  + ...-.....+.+.|++.|+.|++|...|++++|++...
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            99999986432  2 33333566788889999999999999999999999654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.73  E-value=1.8e-16  Score=146.67  Aligned_cols=223  Identities=11%  Similarity=0.124  Sum_probs=164.2

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC--EEEEEeCCCcEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRV  310 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~I~i  310 (531)
                      .|...+-+++|+-||..+++|+.|+.+++||+..++.        +.+..|.++|.++.|-+...  .|+||+.|++|+.
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf  141 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF  141 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceee
Confidence            3556777899999999999999999999999986532        35778999999999987655  8999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC---
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH---  387 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---  387 (531)
                      ||++....+..+..++.   +........                ..+.+..+..+.+|.....      ..+++.+   
T Consensus       142 WD~R~~~pv~t~~LPeR---vYa~Dv~~p----------------m~vVata~r~i~vynL~n~------~te~k~~~Sp  196 (347)
T KOG0647|consen  142 WDTRSSNPVATLQLPER---VYAADVLYP----------------MAVVATAERHIAVYNLENP------PTEFKRIESP  196 (347)
T ss_pred             cccCCCCeeeeeeccce---eeehhccCc----------------eeEEEecCCcEEEEEcCCC------cchhhhhcCc
Confidence            99998877776665433   111111111                1122333444455444221      1112222   


Q ss_pred             -CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--e-cC---------CceEEEEEeeCCCCEEEEEeCCCeE
Q 009614          388 -SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--S-HN---------NYVTSVAFNPVDDNYFISGSIDGKV  453 (531)
Q Consensus       388 -~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~-h~---------~~V~sv~fsp~d~~~l~sgs~Dg~I  453 (531)
                       .-.+.||+..++. ..+.|+-.|.+-|..+..+.+...|  + |.         ..|++|+|+| ....|++.+.||+.
T Consensus       197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTF  275 (347)
T ss_pred             ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceE
Confidence             2357899988887 7799999999999999876333333  2 32         2578999999 77889999999999


Q ss_pred             EEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEe
Q 009614          454 RIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       454 ~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs  489 (531)
                      ..||-.....+ ....|..+|++.+|+.+|.++|-+.
T Consensus       276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            99999887665 4688899999999999999987764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.2e-16  Score=151.02  Aligned_cols=227  Identities=16%  Similarity=0.229  Sum_probs=171.8

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEccc--CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (531)
                      .+.|++|.|+|....|++|+.||+++||.+..  ...++.+.....++.+..|.++....++               ..+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~---------------~s~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF---------------TSG  277 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE---------------ecc
Confidence            46899999999999999999999999999853  4466677777778888888776654333               233


Q ss_pred             CCceEEEeCCccccccCcceeEeecCC-CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeC
Q 009614          362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV  439 (531)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~  439 (531)
                      .....+.|+.....+  ..+....++. ..+....++|++ +|+..+..|.|.|....+++.+..+..++.|..++|+. 
T Consensus       278 rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-  354 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-  354 (514)
T ss_pred             cceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-
Confidence            344566666644332  2233344443 457788899998 99999999999999999999999999999999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc--eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccccc
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK  517 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~--v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk  517 (531)
                      +++.|++++.+|.|.+||++...++......+.  -+++|.+++|.|||+|+..|.|.|||.++...-...+ ++.. -.
T Consensus       355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk-Pik~-~d  432 (514)
T KOG2055|consen  355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK-PIKT-VD  432 (514)
T ss_pred             CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC-chhh-hh
Confidence            999999999999999999999988864333333  4678888999999999999999999976543221111 1100 01


Q ss_pred             CCCceeeeEEEee
Q 009614          518 LPGKRITGFQVVK  530 (531)
Q Consensus       518 ~~~~~It~l~f~p  530 (531)
                      .-...|++++|+|
T Consensus       433 NLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  433 NLTTAITSLQFNH  445 (514)
T ss_pred             hhheeeeeeeeCc
Confidence            1135799999987

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.72  E-value=9.4e-17  Score=163.00  Aligned_cols=207  Identities=22%  Similarity=0.337  Sum_probs=164.1

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCC-----eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG  303 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg-----~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs  303 (531)
                      ..+.+|-..+.+++.+|+|+++|++.+..     .|++|+..       .....+.+.+|.-.|+.|+|||||++|++++
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-------~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs  591 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-------NWLQVQELEGHSLTVTRLAFSPDGRYLLSVS  591 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------chhhhheecccceEEEEEEECCCCcEEEEee
Confidence            34667778888999999999999987654     58999887       3334457899999999999999999999999


Q ss_pred             CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      .|.++.+|........ .+                                                         ....
T Consensus       592 RDRt~sl~~~~~~~~~-e~---------------------------------------------------------~fa~  613 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDIKD-EF---------------------------------------------------------RFAC  613 (764)
T ss_pred             cCceEEeeeeecccch-hh---------------------------------------------------------hhcc
Confidence            9999999997443210 00                                                         0122


Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEE---eecCCceEEEEEeeCCCC----EEEEEeCCCeE
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRV---FSHNNYVTSVAFNPVDDN----YFISGSIDGKV  453 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~---~~h~~~V~sv~fsp~d~~----~l~sgs~Dg~I  453 (531)
                      .+.|+.-|.+..|+|++ +++|+|.|++|++|.....  +.+..   ..+...|+.++|.|.+.+    .+++|-..|.|
T Consensus       614 ~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI  693 (764)
T KOG1063|consen  614 LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI  693 (764)
T ss_pred             ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence            56799999999999999 8999999999999999877  55444   348899999999986555    78899999999


Q ss_pred             EEEeCCC-------Ce------EEEecCCCCceEEEEEccC----------CCEEEEEeCCCcEEEEeCC
Q 009614          454 RIWEVRR-------CQ------VVDYTDIREIVSAVCYCPD----------GKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       454 ~Iwd~~~-------~~------~~~~~~~~~~v~~v~~spd----------g~~l~sgs~dg~I~iwd~~  500 (531)
                      .+|....       +.      .-....+...|+.++|.|.          ...|++|+.|..++|+++.
T Consensus       694 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  694 VLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             EEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            9999651       11      0124556778999999974          2346999999999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2e-15  Score=140.22  Aligned_cols=206  Identities=19%  Similarity=0.277  Sum_probs=156.0

Q ss_pred             cccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC----ccccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (531)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (531)
                      .+|.+-|.++.|.+.|+.+|+|+.|++|+|||....    .+....+.+...+..+.|.....+.+++            
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA------------   77 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVA------------   77 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEE------------
Confidence            479999999999999999999999999999996433    3445566777777777777777666654            


Q ss_pred             ccccCCCceEEEeCCccccccC-----cceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEE----
Q 009614          357 SLRKSSDLTCVVLPPKVFRLLE-----KPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRV----  424 (531)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~----  424 (531)
                        +.+.|..+.+|.........     ....++....+.|+++.|.|..   .|++++.||+||||+...--.+..    
T Consensus        78 --~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq  155 (361)
T KOG2445|consen   78 --TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ  155 (361)
T ss_pred             --EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence              34566677777763222111     2345677788899999999964   899999999999998764333222    


Q ss_pred             --ee--------cCCceEEEEEeeC--CCCEEEEEeCC-----CeEEEEeCCCC--eEE---EecCCCCceEEEEEccC-
Q 009614          425 --FS--------HNNYVTSVAFNPV--DDNYFISGSID-----GKVRIWEVRRC--QVV---DYTDIREIVSAVCYCPD-  481 (531)
Q Consensus       425 --~~--------h~~~V~sv~fsp~--d~~~l~sgs~D-----g~I~Iwd~~~~--~~~---~~~~~~~~v~~v~~spd-  481 (531)
                        +.        +..+..||.|+|.  ...+||+|+.+     +.+.||.....  +..   .+.+|..+|+.|+|.|+ 
T Consensus       156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~  235 (361)
T KOG2445|consen  156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI  235 (361)
T ss_pred             hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence              22        5677899999983  34688888876     58999987653  222   47899999999999995 


Q ss_pred             ---CCEEEEEeCCCcEEEEeCCC
Q 009614          482 ---GKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       482 ---g~~l~sgs~dg~I~iwd~~~  501 (531)
                         -.+||+++.|| |+||.+..
T Consensus       236 Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  236 GRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             CCceeeEEEeecCc-EEEEEEee
Confidence               35799999999 99999974

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.9e-16  Score=147.68  Aligned_cols=194  Identities=20%  Similarity=0.329  Sum_probs=151.7

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      ..+|++...|.|++||..++       ...+++++|...++.++|..  ....+.+|+.||+|++||++.......+.  
T Consensus        41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS--  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee--
Confidence            56888999999999998853       33457899999999999976  45689999999999999998766433321  


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC-CCeeEEEEcCCC-eEE
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLL  403 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~sp~~-~l~  403 (531)
                                                                                +..|. .+..+++..-++ .++
T Consensus       112 ----------------------------------------------------------~~~~~~~~f~~ld~nck~~ii~  133 (376)
T KOG1188|consen  112 ----------------------------------------------------------WTQQSGTPFICLDLNCKKNIIA  133 (376)
T ss_pred             ----------------------------------------------------------ccCCCCCcceEeeccCcCCeEE
Confidence                                                                      12222 344555555344 555


Q ss_pred             EEe----CCCcEEEEECCCCeE-EEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe----EEEecCCCCc
Q 009614          404 SSS----ADKTVRLWQVGIDRC-LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREI  472 (531)
Q Consensus       404 s~s----~Dg~V~lwdl~~~~~-l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----~~~~~~~~~~  472 (531)
                      +|.    .+-.|.+||++..+. +..+.  |.+.||+|+|+|.+.++|++||.||-|.|||+....    ++....+...
T Consensus       134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS  213 (376)
T KOG1188|consen  134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS  213 (376)
T ss_pred             eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence            554    367799999998776 66664  999999999999999999999999999999998653    3356777888


Q ss_pred             eEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       473 v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      |..+.|..++ +.|.+-+..++..+|+++.+......
T Consensus       214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            9999999887 55888899999999999988754433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.71  E-value=1.7e-16  Score=159.26  Aligned_cols=115  Identities=19%  Similarity=0.456  Sum_probs=101.8

Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-------EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-------CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~-------~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      .|+++.|.|-.  .|+.++.||.|+||.+..+-       +...+. |...|+++.|+|.-.+.|++++.|.+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            47889999965  99999999999999987542       333443 999999999999888999999999999999999


Q ss_pred             CCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       460 ~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      +.+.. .+.+|.+.|..++|+|||+.+++.+.||+|++|+.++++.
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            98765 6999999999999999999999999999999999887653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=4.1e-16  Score=141.83  Aligned_cols=251  Identities=12%  Similarity=0.154  Sum_probs=161.8

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ..++.|...|.++.|..++. |.+|...|.|++|.+.+.....       .+. .|...|+.+.--|+ ..|.+-+.|+.
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~-------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~   78 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP-------LIRLFGRLFITNLQSIPN-DSLDTQGRDPL   78 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccch-------hhhhhccceeeceeecCC-cchhhcCCCce
Confidence            34557778888899988876 7889999999999998655432       244 46788999999887 46889999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCccee--eeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI--PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.+|++..+..+..-...-.......++........  .........+.....-++..-.+.+-+.           .-.
T Consensus        79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~  147 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SER  147 (323)
T ss_pred             EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhc
Confidence            999999765433222111111111111100000000  0000000000000000011111111111           112


Q ss_pred             cCCCCeeEEEEcCC-C---eEEEEeCCCcEEEEECCCCeEEEEe-----------ecCCceEEEEEeeC-----------
Q 009614          386 GHSSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTSVAFNPV-----------  439 (531)
Q Consensus       386 ~h~~~I~~l~~sp~-~---~l~s~s~Dg~V~lwdl~~~~~l~~~-----------~h~~~V~sv~fsp~-----------  439 (531)
                      +..+.+.+..|... +   +|++|..+|.|.+||+.++..+-.+           .|..+|.++.|.+.           
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            34567777775443 2   7788899999999999886332221           15555555554432           


Q ss_pred             ----------------------------------CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCE
Q 009614          440 ----------------------------------DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKG  484 (531)
Q Consensus       440 ----------------------------------d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~  484 (531)
                                                        |++++|+++.|+.||||..++.+++. +..|...|.+++|+|+...
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence                                              89999999999999999999998884 7889999999999999999


Q ss_pred             EEEEeCCCcEEEEeC
Q 009614          485 GIVGTMTGNCRFYDI  499 (531)
Q Consensus       485 l~sgs~dg~I~iwd~  499 (531)
                      +|.++.|++|.+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.5e-15  Score=133.55  Aligned_cols=240  Identities=20%  Similarity=0.327  Sum_probs=171.1

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcc---cccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSR---ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~---~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      +-+++|.++++++|..+|.|.+..++....   +.......-..++|.++|+.|+|.  ..+|++|+. |.|+-|...+.
T Consensus        15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~   91 (325)
T KOG0649|consen   15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEE   91 (325)
T ss_pred             HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhh
Confidence            458999999999999999999998874321   111111222458999999999998  446777765 99999988654


Q ss_pred             ccccc------eecC-------CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          317 ERLDG------FDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       317 ~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      .....      ...+       -..+..+...+...                ..+..++|+.++.|+....    +...+
T Consensus        92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en----------------Si~~AgGD~~~y~~dlE~G----~i~r~  151 (325)
T KOG0649|consen   92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN----------------SILFAGGDGVIYQVDLEDG----RIQRE  151 (325)
T ss_pred             hhhccchhhhhhcCccccCcccCCccceeEeccCCC----------------cEEEecCCeEEEEEEecCC----EEEEE
Confidence            43111      1100       01122222222221                1234457888888888774    44688


Q ss_pred             eecCCCCeeEEEEcC-CCeEEEEeCCCcEEEEECCCCeEEEEee---c--------CCceEEEEEeeCCCCEEEEEeCCC
Q 009614          384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRVFS---H--------NNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp-~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---h--------~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                      ++||+..|.++.-.. ++.+++|+.||++|+||++++++++++.   |        ...|.+++.   +..++++|+. .
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p  227 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-P  227 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-C
Confidence            999999999998844 4599999999999999999999998874   2        234566665   5578877654 5


Q ss_pred             eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .+.+|.++..+..........+..+.|-.|  .+++++..+.|.-|.+. |.+....+
T Consensus       228 ~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip  282 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP  282 (325)
T ss_pred             ceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc
Confidence            899999999999888888888998998654  67888878889999876 55555444

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.2e-16  Score=144.31  Aligned_cols=164  Identities=23%  Similarity=0.323  Sum_probs=135.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceE
Q 009614          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (531)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (531)
                      -.|+.|++.|.+||+|+.||.|.|||+.|...                                                
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------   57 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------   57 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence            78999999999999999999999999876541                                                


Q ss_pred             EEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                                    -..+.+|..+|.+++|+++| .|++++.|..|.+||+..+.+++.+..+.+|+.++|+|.+.+.++
T Consensus        58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v  123 (405)
T KOG1273|consen   58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV  123 (405)
T ss_pred             --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence                          23456799999999999999 999999999999999999999999999999999999997777777


Q ss_pred             EEeCCCeEEEEeCCCCe--EEEecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeee
Q 009614          446 SGSIDGKVRIWEVRRCQ--VVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL  512 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~~--~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~  512 (531)
                      +.-.+..-.+-++...+  ++....   ......+..|.+.|+++++|...|.+.+||..+-+++..+++..
T Consensus       124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits  195 (405)
T KOG1273|consen  124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS  195 (405)
T ss_pred             EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence            77666666666666533  222111   11223334689999999999999999999999999888777654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.70  E-value=3.4e-15  Score=139.45  Aligned_cols=266  Identities=14%  Similarity=0.160  Sum_probs=179.8

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCccccc-----ccccceEEcc-cCCCEEEEEEc-------cCCCEEEEEeCCC
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEFLA-HEGSILTMKFS-------LDGQYLASGGEDG  306 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~-----~~~~~~~l~~-H~~~I~~l~fs-------pdg~~Lasgs~Dg  306 (531)
                      ...|+|||..|++-+.|..+++|++........     ...+..+++- ....|+.-+|-       |+..++|+.+.+.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            358999999999999999999998863211110     1111112221 23467777885       5777999999999


Q ss_pred             cEEEEEcccCccccceecCCC-----CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC-cccc---cc
Q 009614          307 TVRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP-KVFR---LL  377 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~  377 (531)
                      -|++||.-+|+....+..-..     ...++.|+++....+                 .+....+.+++. +..+   ..
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-----------------aGykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-----------------AGYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-----------------ecccceEEEeeccCCCCCCcch
Confidence            999999999987655543221     233455555443222                 223334444443 1111   01


Q ss_pred             CcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC-CCeE
Q 009614          378 EKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI-DGKV  453 (531)
Q Consensus       378 ~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~-Dg~I  453 (531)
                      ....+...+..+-|.+++++|..  .++.++.-.++-||.-..+.++..+. |.+.|+.++|.+ +++.|.+|+. |-+|
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkI  275 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKI  275 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeE
Confidence            11112234457889999999976  89999999999999988888888875 999999999999 9999999875 7799


Q ss_pred             EEEeCCCCeEE--EecCCCC---ceEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeeeecccccCCCceeeeEE
Q 009614          454 RIWEVRRCQVV--DYTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQ  527 (531)
Q Consensus       454 ~Iwd~~~~~~~--~~~~~~~---~v~~v~~spdg~~l~sgs~dg~I~iwd~~~-~~l~~~~~~~~~~~kk~~~~~It~l~  527 (531)
                      ..||++..+-.  .+..|..   .-.-....|+|++|++|+.||.|++||+++ +.....+.        .+.-.+.+++
T Consensus       276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvs  347 (406)
T KOG2919|consen  276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVS  347 (406)
T ss_pred             EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------ccccccccee
Confidence            99999975432  3444433   222355678999999999999999999987 55332221        1224567777


Q ss_pred             EeeC
Q 009614          528 VVKI  531 (531)
Q Consensus       528 f~p~  531 (531)
                      ++|+
T Consensus       348 lnP~  351 (406)
T KOG2919|consen  348 LNPI  351 (406)
T ss_pred             cCcc
Confidence            7764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=3.5e-16  Score=154.45  Aligned_cols=213  Identities=21%  Similarity=0.307  Sum_probs=158.9

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (531)
                      ..++.++.||++.|.+-...        ..+.+.+|.++|.+-.|+|||.-|+|+|+||.|++|.- +|-.-..+.....
T Consensus        76 d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence            45677888999999765421        22347789999999999999999999999999999985 4544445556667


Q ss_pred             CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe
Q 009614          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS  406 (531)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s  406 (531)
                      .+.|+.|.++....+++..                 +.+.+-+...    ...+-..+.|.+-|.++.|++.. .+++|+
T Consensus       147 ~v~c~~W~p~S~~vl~c~g-----------------~h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG  205 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG-----------------GHISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGG  205 (737)
T ss_pred             eeEEEEECCCCCceEEecC-----------------CeEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecC
Confidence            7889999888876655432                 1122211111    12244578899999999999988 999999


Q ss_pred             CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~  486 (531)
                      .|-..++||-........-.|..+|++++|+| + ..++.++.+ ++|+          -....+.|..++|++||..++
T Consensus       206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceee
Confidence            99999999986655555556999999999999 6 777777653 4441          223456789999999999999


Q ss_pred             EEeCCCcEEEEeCCCCe
Q 009614          487 VGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       487 sgs~dg~I~iwd~~~~~  503 (531)
                      +|+..|.+.+=.+-..+
T Consensus       273 ~gt~~G~v~~A~~ieq~  289 (737)
T KOG1524|consen  273 CGTSTGQLIVAYAIEQQ  289 (737)
T ss_pred             ccccCceEEEeeeehhh
Confidence            99999987655444333

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.68  E-value=1.9e-16  Score=148.06  Aligned_cols=211  Identities=22%  Similarity=0.408  Sum_probs=156.1

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccceec
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      ...++|+|+.-|.|+|.|+.+...       ...+.+|..+|+.|+|.|+ .++|++|+.|.+|++|++++..++..+  
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~~-------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf--  174 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQC-------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF--  174 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhhh-------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe--
Confidence            356889999999999999985443       3458899999999999995 478999999999999999988754332  


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~  403 (531)
                                                                               .-+.+|.+.|.++.|+++| +|+
T Consensus       175 ---------------------------------------------------------GG~egHrdeVLSvD~~~~gd~i~  197 (385)
T KOG1034|consen  175 ---------------------------------------------------------GGVEGHRDEVLSVDFSLDGDRIA  197 (385)
T ss_pred             ---------------------------------------------------------cccccccCcEEEEEEcCCCCeee
Confidence                                                                     2246799999999999999 999


Q ss_pred             EEeCCCcEEEEECCCCe-------------------------EEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          404 SSSADKTVRLWQVGIDR-------------------------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       404 s~s~Dg~V~lwdl~~~~-------------------------~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      ++++|.+|++|++...+                         ....|    .|..+|-|+.|   -++++++-+-++.|.
T Consensus       198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscenaI~  274 (385)
T KOG1034|consen  198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCENAIV  274 (385)
T ss_pred             ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---HhhheeecccCceEE
Confidence            99999999999997321                         11112    17888889888   468999999999999


Q ss_pred             EEeCCC-Ce-------------EE-EecCCCCceEEE--EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccccc
Q 009614          455 IWEVRR-CQ-------------VV-DYTDIREIVSAV--CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK  517 (531)
Q Consensus       455 Iwd~~~-~~-------------~~-~~~~~~~~v~~v--~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk  517 (531)
                      .|..-. .+             ++ .+.-....|+-+  +|.|-+++||.|...|.|.+||++........++.    +.
T Consensus       275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~----~s  350 (385)
T KOG1034|consen  275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT----HS  350 (385)
T ss_pred             EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE----ec
Confidence            998721 11             11 122233345544  45567889999999999999999988775322222    11


Q ss_pred             CCCceeeeEEEe
Q 009614          518 LPGKRITGFQVV  529 (531)
Q Consensus       518 ~~~~~It~l~f~  529 (531)
                      ..++.|.-.+|+
T Consensus       351 ~~~~tVRQ~sfS  362 (385)
T KOG1034|consen  351 KSGSTVRQTSFS  362 (385)
T ss_pred             cccceeeeeeec
Confidence            223555555554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6.1e-16  Score=150.86  Aligned_cols=212  Identities=15%  Similarity=0.199  Sum_probs=151.3

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc--ccccceEEcccCCCEEEEEEccC--CCEEEEEeCCC
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS--SLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDG  306 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~--~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg  306 (531)
                      +..|+..+.++.|+-||.++++|++||.|.+|.+-..-....  .......+..|+-+|+++...+.  ..+|+|++.|.
T Consensus       119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence            456777888899999999999999999999998764322211  23344578899999999998774  35899999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCC------------ccc
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP------------KVF  374 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  374 (531)
                      ++++||+..+..+.++..+. .+.++.+.+..  ..+              +.++.++.+.+...            +.+
T Consensus       199 t~k~wdlS~g~LLlti~fp~-si~av~lDpae--~~~--------------yiGt~~G~I~~~~~~~~~~~~~~v~~k~~  261 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITFPS-SIKAVALDPAE--RVV--------------YIGTEEGKIFQNLLFKLSGQSAGVNQKGR  261 (476)
T ss_pred             eEEEEEeccceeeEEEecCC-cceeEEEcccc--cEE--------------EecCCcceEEeeehhcCCccccccccccc
Confidence            99999999998776664432 23333333222  222              22333333333222            223


Q ss_pred             cccCcceeEeecCCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC
Q 009614          375 RLLEKPLHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~--~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D  450 (531)
                      ......+..+.||.+  .|+|++++-+| +|++|+.||.|+|||+.+.++++++. ..++|+.+++.|.....+..-...
T Consensus       262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~  341 (476)
T KOG0646|consen  262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQ  341 (476)
T ss_pred             ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccC
Confidence            334556778899998  99999999999 99999999999999999999999998 789999999988333333333333


Q ss_pred             CeEEEEeCC
Q 009614          451 GKVRIWEVR  459 (531)
Q Consensus       451 g~I~Iwd~~  459 (531)
                      -.+-.|++.
T Consensus       342 ps~~~~~lk  350 (476)
T KOG0646|consen  342 PSLPNPHLK  350 (476)
T ss_pred             ccCCchHhh
Confidence            344445443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=8.5e-16  Score=152.18  Aligned_cols=234  Identities=16%  Similarity=0.239  Sum_probs=171.9

Q ss_pred             hccccccccc---cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--
Q 009614          220 VKRGWLKKLG---AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--  294 (531)
Q Consensus       220 ~~~~w~~~~~---~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--  294 (531)
                      ....|++++.   .+.+|.+.|+++.|+.+|.+|++|+.|-++.|||.-..+...      ..-.||...|.+++|-|  
T Consensus        32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------sI~TgHtaNIFsvKFvP~t  105 (758)
T KOG1310|consen   32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------SISTGHTANIFSVKFVPYT  105 (758)
T ss_pred             cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------eeecccccceeEEeeeccC
Confidence            3455666554   488999999999999999999999999999999987333221      13468999999999999  


Q ss_pred             CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       295 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                      +.++++||..|..|+++|+...+.-..-.                          +                        
T Consensus       106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~--------------------------~------------------------  135 (758)
T KOG1310|consen  106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDH--------------------------G------------------------  135 (758)
T ss_pred             CCeEEEeccCcceEEEEeccccccccccc--------------------------C------------------------
Confidence            56689999999999999986533100000                          0                        


Q ss_pred             cccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEE-------EEee----cCCceEEEEEeeCCC
Q 009614          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCL-------RVFS----HNNYVTSVAFNPVDD  441 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l-------~~~~----h~~~V~sv~fsp~d~  441 (531)
                        ...+.+-+..|...|..|+..|++  .+.+++.||+|+-+|++.....       ..+.    .--...|+..+|.+.
T Consensus       136 --~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp  213 (758)
T KOG1310|consen  136 --MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP  213 (758)
T ss_pred             --ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence              012344567799999999999998  9999999999999999863211       1111    123468899999899


Q ss_pred             CEEEEEeCCCeEEEEeCCCC--------e----------EEEe--cCCC-----------CceEEEEEccCCCEEEEEeC
Q 009614          442 NYFISGSIDGKVRIWEVRRC--------Q----------VVDY--TDIR-----------EIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~~--------~----------~~~~--~~~~-----------~~v~~v~~spdg~~l~sgs~  490 (531)
                      .+|++|+.|--.++||.+..        .          ++.+  .+|-           ..++-+.|+|+|.-|++.-.
T Consensus       214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~  293 (758)
T KOG1310|consen  214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG  293 (758)
T ss_pred             ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC
Confidence            99999999999999995421        1          1211  1111           12677899999988877766


Q ss_pred             CCcEEEEeCCCCeEEEEeeee
Q 009614          491 TGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       491 dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ...|+++|+..++-...+...
T Consensus       294 gEhVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  294 GEHVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             CeEEEEEeecCCCCceeecCc
Confidence            778999999988876655443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.67  E-value=1.1e-15  Score=153.94  Aligned_cols=194  Identities=18%  Similarity=0.285  Sum_probs=146.0

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (531)
                      ...|+.+..+|.|.++|.......+.. .......+|..+|..++|-|....|++++.|.++++||+.+.++..      
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------  136 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------  136 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec------
Confidence            456788999999999999865543211 1123467899999999999966789999999999999998776421      


Q ss_pred             CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEE
Q 009614          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS  404 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s  404 (531)
                                                                            ...+.||.+.|.+++|.|.+  .|++
T Consensus       137 ------------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~t  162 (720)
T KOG0321|consen  137 ------------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCT  162 (720)
T ss_pred             ------------------------------------------------------ceeecccccccchhhhccCCCcceee
Confidence                                                                  22367899999999999987  9999


Q ss_pred             EeCCCcEEEEECCCCe--------------------EEEEe--------ecCCceEE---EEEeeCCCCEEEEEeC-CCe
Q 009614          405 SSADKTVRLWQVGIDR--------------------CLRVF--------SHNNYVTS---VAFNPVDDNYFISGSI-DGK  452 (531)
Q Consensus       405 ~s~Dg~V~lwdl~~~~--------------------~l~~~--------~h~~~V~s---v~fsp~d~~~l~sgs~-Dg~  452 (531)
                      |+.||.|.|||++...                    +.+..        .+...|.+   +.+.. |...||+++. |+.
T Consensus       163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~  241 (720)
T KOG0321|consen  163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADST  241 (720)
T ss_pred             ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcc
Confidence            9999999999997432                    11101        13333433   44444 8889999887 999


Q ss_pred             EEEEeCCCCeEE---------EecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          453 VRIWEVRRCQVV---------DYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       453 I~Iwd~~~~~~~---------~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      |+|||+++.+..         .+..+   .-.+++++....|.+|.+.+.|+.|++|++.+.
T Consensus       242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            999999986433         12223   335778888888899999999999999999754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.65  E-value=2.6e-15  Score=146.10  Aligned_cols=208  Identities=19%  Similarity=0.246  Sum_probs=155.7

Q ss_pred             cceEEcccCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcccCc----cccceecCCCCCeeEEEeecCCcceeeeeccc
Q 009614          276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK  349 (531)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (531)
                      ..+.++-|.+.|++++|+|..  +++|+|..-|.|-+||+.+.+    .+..+..+..++.++.|.+.....++..    
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss----  253 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS----  253 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee----
Confidence            344567789999999999954  588889999999999995322    2334556667788888888877766554    


Q ss_pred             cccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-EEEee-
Q 009614          350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVFS-  426 (531)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~-l~~~~-  426 (531)
                                 +.|+.+..-+......  ..+..+......+.++.++... .++.+..=|...+||++++.. ...+. 
T Consensus       254 -----------SyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  254 -----------SYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             -----------ccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence                       3444444443322111  1122223344566777787766 666777667999999998665 33333 


Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~---~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      |...|++|+++|....+||+++.|++++|||++.-   .  .+....|...|.+++|+|.+-.|++.+.|..|+|||..
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            88899999999999999999999999999999862   1  36788899999999999998889999999999999984

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=4e-15  Score=137.08  Aligned_cols=232  Identities=16%  Similarity=0.205  Sum_probs=165.8

Q ss_pred             eccccceeeeCCCC-----eEEeeecCCeEEEEeCCCC--cccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCC
Q 009614          235 IDRHGSATLKPGDH-----ELTLGQRMRRVRVHPVKKQ--SRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG  306 (531)
Q Consensus       235 ~~~~~s~~fspdg~-----~lasgs~dg~I~vwd~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg  306 (531)
                      ...+..+.|.|+..     +||+.  +..+++|.+...  ............-..|..++++..|+. +-++|.+++-|-
T Consensus        96 ~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   96 PYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            34455566777653     44544  467999998843  222222111222345678999999988 788999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      +..|||+.++..                                                           ......+..
T Consensus       174 TCTiWdie~~~~-----------------------------------------------------------~~vkTQLIA  194 (364)
T KOG0290|consen  174 TCTIWDIETGVS-----------------------------------------------------------GTVKTQLIA  194 (364)
T ss_pred             eEEEEEEeeccc-----------------------------------------------------------cceeeEEEe
Confidence            999999987621                                                           001234567


Q ss_pred             CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-e---cCCceEEEEEeeCCCCEEEEEeCC-CeEEEEeCC
Q 009614          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-S---HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVR  459 (531)
Q Consensus       387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~---h~~~V~sv~fsp~d~~~l~sgs~D-g~I~Iwd~~  459 (531)
                      |...|.+++|...+  .+++.+.||.||+||++...--..+ .   ...+...++|++.|.+|+|+-..| ..|.|.|++
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence            99999999999976  9999999999999999876543333 2   356789999999999999987665 479999999


Q ss_pred             CCe--EEEecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          460 RCQ--VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       460 ~~~--~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ...  +..+.+|...|++|+|.|. ...|++++.|..+.|||+...-.  +....+.- ....+..|..||++|
T Consensus       275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~--~~~~dPil-ay~a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR--ENGEDPIL-AYTAGGEVNQIQWSS  345 (364)
T ss_pred             CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc--cCCCCchh-hhhccceeeeeeecc
Confidence            743  3469999999999999995 47899999999999999975322  00000000 112456777777765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.65  E-value=4.1e-16  Score=161.05  Aligned_cols=251  Identities=15%  Similarity=0.258  Sum_probs=189.5

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      +.+.+|...|.|+.|...|.++++|+.|..|+||...+..       +...+.||.+.|+.++.+.+..++|+++.|..|
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccCceE
Confidence            3467788899999999999999999999999999987544       334589999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC--cc------
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE--KP------  380 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------  380 (531)
                      ++|.+..+..+..+..+.+.+..+.|.+-.                    ..+.++++.+|+.+..-...  .|      
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~~  316 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTEK  316 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc--------------------cCCCCCceEeccccccccccCCCCCCcccc
Confidence            999999999999999999888888877654                    23445555555544100000  00      


Q ss_pred             ------------------eeEeecCCCCeeEEEEcCCC-eE-----------EEEeCCCcEEEEECCCCeEEEEee-cCC
Q 009614          381 ------------------LHEFQGHSSEVLDLSWSKNG-FL-----------LSSSADKTVRLWQVGIDRCLRVFS-HNN  429 (531)
Q Consensus       381 ------------------~~~~~~h~~~I~~l~~sp~~-~l-----------~s~s~Dg~V~lwdl~~~~~l~~~~-h~~  429 (531)
                                        ..........+.+++|..+. .+           +++-.+..+++|++.+++.++.+. |..
T Consensus       317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence                              00001111123334444443 33           334455668899999998888775 999


Q ss_pred             ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      ++..+.+||.+.....+++.||+..|||+-.+.+++ +...+..+..-.|++||..++....-|.++|...-.++-+.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence            999999999888888999999999999999887763 22335566778999999999999999999999876665543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=1.5e-15  Score=152.47  Aligned_cols=201  Identities=16%  Similarity=0.310  Sum_probs=154.0

Q ss_pred             eeeCCCCeEEe--eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcc
Q 009614          242 TLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       242 ~fspdg~~las--gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      -|+.+...+|+  .+.-|.|-||+++......... +...+  ....|+.+.|.| |...||.+++||.|++|.+..+..
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv-~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl  662 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGV-MPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL  662 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCccc-ccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence            37777777775  5567999999998655432211 11111  346799999999 888999999999999999976643


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      ....                                                       ..|...+.+|...|+.|.|+|
T Consensus       663 ~e~~-------------------------------------------------------~tPe~~lt~h~eKI~slRfHP  687 (1012)
T KOG1445|consen  663 PENE-------------------------------------------------------MTPEKILTIHGEKITSLRFHP  687 (1012)
T ss_pred             Cccc-------------------------------------------------------CCcceeeecccceEEEEEecc
Confidence            2111                                                       235567888999999999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC---CCCc
Q 009614          399 NG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---IREI  472 (531)
Q Consensus       399 ~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~---~~~~  472 (531)
                      =.  .|++++.|-+|+|||+++++....+ .|.+.|..++|+| +|+.+++.+.||+|++|+.+++..-...+   ....
T Consensus       688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR  766 (1012)
T KOG1445|consen  688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR  766 (1012)
T ss_pred             hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence            65  9999999999999999998876666 5999999999999 99999999999999999998865332111   1223


Q ss_pred             eEEEEEccCCCEEEEEeCCC----cEEEEeCCC
Q 009614          473 VSAVCYCPDGKGGIVGTMTG----NCRFYDIKD  501 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg----~I~iwd~~~  501 (531)
                      --.|.|.-||+++++.+.|.    .|.+||.++
T Consensus       767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            34577888999998887764    478888764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.64  E-value=5.7e-15  Score=135.98  Aligned_cols=209  Identities=18%  Similarity=0.268  Sum_probs=151.1

Q ss_pred             eccccceeeeCCCCeE-EeeecC-------CeEEEEeCCCCccc--ccccccceEEc-ccCCCEEEEEEccCCCEEEEEe
Q 009614          235 IDRHGSATLKPGDHEL-TLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGG  303 (531)
Q Consensus       235 ~~~~~s~~fspdg~~l-asgs~d-------g~I~vwd~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs  303 (531)
                      .+.+-.++-+|-.+.+ ++...+       ..+.||.+......  ..++.....+. .|-+.|.||.|.|++..||+-.
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~  142 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD  142 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence            3444456666655544 433221       34789988754432  22233333333 4567999999999999998876


Q ss_pred             CCCcEEEEEcccCccc-cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          304 EDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                       |..|.+|++.++..+ ..+...                                                         
T Consensus       143 -dn~i~l~~l~ess~~vaev~ss---------------------------------------------------------  164 (370)
T KOG1007|consen  143 -DNNIVLWSLDESSKIVAEVLSS---------------------------------------------------------  164 (370)
T ss_pred             -cCceEEEEcccCcchheeeccc---------------------------------------------------------
Confidence             788999999876542 111100                                                         


Q ss_pred             EeecCCCCeeEEEEcCC--CeEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          383 EFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~--~~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      .-.+|....++-+|+|.  +.-+....|+++..||+++..+...+.  |...|..+.|+|....+|++|+.||.|+|||.
T Consensus       165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~  244 (370)
T KOG1007|consen  165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT  244 (370)
T ss_pred             ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence            01124455677789983  455555678999999999988887775  99999999999966778999999999999999


Q ss_pred             CCCe--EEEecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 009614          459 RRCQ--VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       459 ~~~~--~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~  501 (531)
                      +.-+  +..+.+|...|++|.|+|. .++|++|+.|..|.+|....
T Consensus       245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            9754  3368999999999999995 47788999999999998754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.63  E-value=1.6e-14  Score=138.74  Aligned_cols=273  Identities=17%  Similarity=0.232  Sum_probs=171.3

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc-------c--ccccccceEEcccCCCEEEEEEccCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-------E--LSSLYTGQEFLAHEGSILTMKFSLDGQ  297 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~-------~--~~~~~~~~~l~~H~~~I~~l~fspdg~  297 (531)
                      -+..+..|...++.+.|+|+|.++|+|+.+|.|.+|....-..       .  .........+.+|...|+.++|+|+++
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence            3446778888999999999999999999999999998772111       0  111333456889999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceE-----EEeCCc
Q 009614          298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC-----VVLPPK  372 (531)
Q Consensus       298 ~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  372 (531)
                      ++++++-|..+++||+..|.....+..+...+..+.|.+-...... ...+..    ...+.......+     .+....
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s-~s~dr~----~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS-KSSDRH----PEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh-hccCcc----cceeeeeeeeeeeeeeeeEeeec
Confidence            9999999999999999999998888888877777776554322111 011100    000000000000     000001


Q ss_pred             cccccC-cceeEeec--CCCCeeEEEEcCCC-eEEEEeC----CC-----cEEEEECC-CCeEEEEee-cCCceEEEEEe
Q 009614          373 VFRLLE-KPLHEFQG--HSSEVLDLSWSKNG-FLLSSSA----DK-----TVRLWQVG-IDRCLRVFS-HNNYVTSVAFN  437 (531)
Q Consensus       373 ~~~~~~-~~~~~~~~--h~~~I~~l~~sp~~-~l~s~s~----Dg-----~V~lwdl~-~~~~l~~~~-h~~~V~sv~fs  437 (531)
                      .....+ +...-+..  -..-...++|+|+| +|++.+.    .+     +.++|+-. ..++...+. ...++..+.|+
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence            110001 11111111  12234567899999 6666431    22     22344322 112222222 33455566665


Q ss_pred             eC-----------------CCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          438 PV-----------------DDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       438 p~-----------------d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      |.                 ..-.+|.++. ..|.|||..+..++-  -.-|-..|+.++|++||..|+..+.||-+-+--
T Consensus       292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vt  370 (434)
T KOG1009|consen  292 PVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVT  370 (434)
T ss_pred             eeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEE
Confidence            53                 2234556655 489999999977663  344667899999999999999999999998888


Q ss_pred             CCCCeEE
Q 009614          499 IKDNQLY  505 (531)
Q Consensus       499 ~~~~~l~  505 (531)
                      +...++-
T Consensus       371 fe~~elg  377 (434)
T KOG1009|consen  371 FEPWELG  377 (434)
T ss_pred             Ecchhcc
Confidence            7766554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=5.4e-13  Score=136.39  Aligned_cols=251  Identities=25%  Similarity=0.442  Sum_probs=189.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEE-ccCCC-EEEEEeC-CC
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-DG  306 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~f-spdg~-~Lasgs~-Dg  306 (531)
                      ...+...+.++.+.+.+..++.++.++.+.+|+......      ....+.++. ..+..+.+ ++++. +++..+. |+
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  134 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG  134 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------eEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence            445566777889999999999999999999999986541      122344433 37777777 88887 5555455 99


Q ss_pred             cEEEEEccc-CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC-CCceEEEeCCccccccCcceeEe
Q 009614          307 TVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS-SDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       307 ~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      .+.+|++.. ......+..+...+..+.+.+...                ..+... .++.+.+|+...    ...+..+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~~~  194 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK----------------LLASGSSLDGTIKLWDLRT----GKPLSTL  194 (466)
T ss_pred             cEEEEEecCCCeEEEEEecCcccEEEEEECCCCC----------------EEEecCCCCCceEEEEcCC----CceEEee
Confidence            999999987 666666666666666555555543                112222 367777887765    3457777


Q ss_pred             ecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEE-Eee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR-VFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~-~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .+|...|.+++|+|++  .+++++.|+.|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..
T Consensus       195 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecC
Confidence            8899999999999988  44444999999999999888777 444 66664 338999 778999999999999999987


Q ss_pred             CeE-E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          461 CQV-V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       461 ~~~-~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ... + ....|...+.++.|.|++..+++++.|+.+++|++.+........
T Consensus       273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            654 3 345778899999999999999889999999999998887665544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=8.3e-15  Score=141.68  Aligned_cols=201  Identities=22%  Similarity=0.265  Sum_probs=139.9

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ..++|+++|..+++|+.||.+|||++......       ....+|.+.|.+|.|+|||++|++-+.| ..+||++.++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh-------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            45899999999999999999999998744333       3467899999999999999999999999 899999999965


Q ss_pred             ccceecCCCC--CeeEEEeecCCcc-eeeeeccccccccccccccCCCceEEEeCCcccccc-CcceeEeecCCCCeeEE
Q 009614          319 LDGFDVQDTD--PSCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       319 ~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~I~~l  394 (531)
                      +.........  ...+.|....... +.....            ....+.+..++...|.-. --+..+...-...|.++
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~------------~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl  287 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAAS------------QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL  287 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEe------------cCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence            5544321111  1112222222111 111110            011111222222222111 00111112234579999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      +++++| +++.|+.||.|.|++..+-++++...  |...|+.+.|+| +.+++++-+.|..+.|..+.-
T Consensus       288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence            999999 99999999999999999999888886  999999999999 999999999999888877654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.4e-13  Score=139.99  Aligned_cols=183  Identities=19%  Similarity=0.320  Sum_probs=147.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      ..+|.+|+|+.+.+.||.+=.||.|-||++..+=..                                            
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~--------------------------------------------   60 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL--------------------------------------------   60 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------------------------------
Confidence            468999999999999999999999999998653211                                            


Q ss_pred             ceEEEeCCccccccCcceeEeec-CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCC
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD  441 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~  441 (531)
                                       ...+.+ ....|..|+|++.+.|.+.+.+|.|.-||+.+.+.+..+. ..+.|++++.+| .+
T Consensus        61 -----------------~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~  122 (691)
T KOG2048|consen   61 -----------------EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN  122 (691)
T ss_pred             -----------------eEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence                             112222 3567999999988899999999999999999999998887 678999999999 88


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEEE---ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          442 NYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                      ..++.|+.||.+..++...+++..   +...++.|.++.|+|++..|++|+.||.|++||+..+.-+.-....+-+-++.
T Consensus       123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~  202 (691)
T KOG2048|consen  123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR  202 (691)
T ss_pred             ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence            999999999988888888877663   44556889999999999999999999999999999998877444444333332


Q ss_pred             CCceeeeEEE
Q 009614          519 PGKRITGFQV  528 (531)
Q Consensus       519 ~~~~It~l~f  528 (531)
                      ...-|=+++|
T Consensus       203 ~~~iVWSv~~  212 (691)
T KOG2048|consen  203 EPTIVWSVLF  212 (691)
T ss_pred             CceEEEEEEE
Confidence            3334445544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.61  E-value=8.1e-15  Score=137.26  Aligned_cols=231  Identities=18%  Similarity=0.307  Sum_probs=161.1

Q ss_pred             ccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          229 GAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      +.+.+|-..++.+.++|+. ++++++++|..|++|++.+......    .--+.||.+.|.++.|+++|.+|+++|.|.+
T Consensus       129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V----fGG~egHrdeVLSvD~~~~gd~i~ScGmDhs  204 (385)
T KOG1034|consen  129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV----FGGVEGHRDEVLSVDFSLDGDRIASCGMDHS  204 (385)
T ss_pred             cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE----ecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence            4567777888999999987 5678899999999999986554321    1125689999999999999999999999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc-eeEeec
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-LHEFQG  386 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  386 (531)
                      |++|++...+....+...      ..+.++.....                          ++....   .-| ..+-.-
T Consensus       205 lk~W~l~~~~f~~~lE~s------~~~~~~~t~~p--------------------------fpt~~~---~fp~fst~di  249 (385)
T KOG1034|consen  205 LKLWRLNVKEFKNKLELS------ITYSPNKTTRP--------------------------FPTPKT---HFPDFSTTDI  249 (385)
T ss_pred             EEEEecChhHHhhhhhhh------cccCCCCccCc--------------------------CCcccc---cccccccccc
Confidence            999999865543333211      11111110000                          000000   000 113345


Q ss_pred             CCCCeeEEEEcCCCeEEEEeCCCcEEEEECC-CCe-------------EEEEee-cCCceEEEE--EeeCCCCEEEEEeC
Q 009614          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDR-------------CLRVFS-HNNYVTSVA--FNPVDDNYFISGSI  449 (531)
Q Consensus       387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~-~~~-------------~l~~~~-h~~~V~sv~--fsp~d~~~l~sgs~  449 (531)
                      |...|-|+.|--+ ++++-+-++.|..|... -++             .+..+. ....|+-|.  |+| -.+.||.|..
T Consensus       250 HrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq  327 (385)
T KOG1034|consen  250 HRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQ  327 (385)
T ss_pred             ccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccC
Confidence            8889999998754 88888888999999872 111             122222 334455554  566 6789999999


Q ss_pred             CCeEEEEeCCCCeEEE-----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          450 DGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~-----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .|+|.+||++......     -......|...+|+.||..|+..+.|+.|.-||..
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999876532     22334578999999999999999999999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.1e-15  Score=161.56  Aligned_cols=213  Identities=20%  Similarity=0.321  Sum_probs=168.2

Q ss_pred             cceeeeccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCc
Q 009614          230 AMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT  307 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~  307 (531)
                      +...|.+.|..+.|++.+. +||+|+.+|.|.|||+.+....+...     -..-.+.|.+++|+.. ...||+++.+|.
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCC
Confidence            3445667788899999877 99999999999999999865544322     1234678999999874 457899999999


Q ss_pred             EEEEEcccCccccceecCCCC--CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVIEHERLDGFDVQDTD--PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.|||++..+.+..+......  ...+.|.+++...++....+            .....+.+|+.+..   ..|++++.
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d------------d~~PviqlWDlR~a---ssP~k~~~  250 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD------------DSAPVIQLWDLRFA---SSPLKILE  250 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC------------CCCceeEeeccccc---CCchhhhc
Confidence            999999988777666554443  34566767666555543222            12334667776543   46788899


Q ss_pred             cCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      +|...|.+|.|++.+  +|++++.|+.|.+|+.++++.+..+. ..+.+..+.|+|.+...|++++.||+|.||.+....
T Consensus       251 ~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  251 GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999999999987  99999999999999999999999996 678899999999888899999999999999998654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1e-14  Score=141.07  Aligned_cols=173  Identities=31%  Similarity=0.406  Sum_probs=133.8

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEE
Q 009614          288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (531)
Q Consensus       288 ~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (531)
                      .+++|+++|..|++|+.||++|||++.....                                                 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-------------------------------------------------  178 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-------------------------------------------------  178 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence            7899999999999999999999999755432                                                 


Q ss_pred             EeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCC--
Q 009614          368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDD--  441 (531)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~--  441 (531)
                                   +.....|.+.|.+|.|+|+| .|++-+.| ..+||+++++.++....   .+.....+.|.. ++  
T Consensus       179 -------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~  243 (398)
T KOG0771|consen  179 -------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ  243 (398)
T ss_pred             -------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence                         23345688999999999999 99999999 89999999997776654   344556777876 55  


Q ss_pred             -CE--EEEEeCCCeEEEEeCCCCeE---E---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeee
Q 009614          442 -NY--FISGSIDGKVRIWEVRRCQV---V---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL  512 (531)
Q Consensus       442 -~~--l~sgs~Dg~I~Iwd~~~~~~---~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~  512 (531)
                       .+  ++.-..-+.|+.|++....-   +   +.......|++++.++||++++.|+.||.|-||++.+-+.++-     
T Consensus       244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~-----  318 (398)
T KOG0771|consen  244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY-----  318 (398)
T ss_pred             ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-----
Confidence             33  33333456677777654321   2   2334456899999999999999999999999999987666542     


Q ss_pred             cccccCCCceeeeEEEeeC
Q 009614          513 QGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       513 ~~~kk~~~~~It~l~f~p~  531 (531)
                        .|+.|..-||+++|+|.
T Consensus       319 --vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  319 --VKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             --ehhhheeeeeeEEEcCC
Confidence              26778899999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.59  E-value=5.3e-14  Score=131.55  Aligned_cols=205  Identities=14%  Similarity=0.206  Sum_probs=165.5

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      ...+.|.+|++|+..+|++.....|.||......    .....++++.|...|++|.|+|..+.|++|+.|..-++|...
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3556677999999999999999999999887544    233556889999999999999999999999999999999873


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      .+..                                                           -+|...+..|+...+++
T Consensus        86 ~~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V  106 (361)
T KOG1523|consen   86 SGGT-----------------------------------------------------------WKPTLVLLRINRAATCV  106 (361)
T ss_pred             CCCe-----------------------------------------------------------eccceeEEEeccceeeE
Confidence            3221                                                           12344566688999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEE---e--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC--------
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR--------  460 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~---~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~--------  460 (531)
                      .|+|.. .|++|+.-..|.||-++...--.+   +  .+...|+++.|+| ++-++++|+.|++.|||...-        
T Consensus       107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpa  185 (361)
T KOG1523|consen  107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPA  185 (361)
T ss_pred             eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCC
Confidence            999998 999999999999998875543311   1  2677899999999 899999999999999997531        


Q ss_pred             ----------CeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          461 ----------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       461 ----------~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                                ++++ .+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                      1122 233556789999999999999999999999999987664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.58  E-value=5.5e-14  Score=137.96  Aligned_cols=184  Identities=16%  Similarity=0.296  Sum_probs=152.6

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc-CCCEEEEEEccCCC-EEEEEeCCCc
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQ-YLASGGEDGT  307 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~-~Lasgs~Dg~  307 (531)
                      .++.|...|.++.++..+.+||+++..|.|.|..+.++....       +|... ...|.-+.|+|..+ +|.+++++|.
T Consensus       116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt-------~f~~~sgqsvRll~ys~skr~lL~~asd~G~  188 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT-------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGA  188 (673)
T ss_pred             hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc-------ceecCCCCeEEEeecccccceeeEeeccCCe
Confidence            355677888889999999999999999999999988655431       23322 34677999999666 5677899999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |.+||+.....+                                                             .+-...|
T Consensus       189 VtlwDv~g~sp~-------------------------------------------------------------~~~~~~H  207 (673)
T KOG4378|consen  189 VTLWDVQGMSPI-------------------------------------------------------------FHASEAH  207 (673)
T ss_pred             EEEEeccCCCcc-------------------------------------------------------------cchhhhc
Confidence            999998654321                                                             2223568


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-EE
Q 009614          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV  464 (531)
Q Consensus       388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-~~  464 (531)
                      ..+...|+|+|.+  +|++.+.|+.|.+||++.......+....+.++++|.+ +|.+|++|...|.|..||++..+ ++
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCc
Confidence            9999999999988  89999999999999999988888888888999999999 99999999999999999999754 34


Q ss_pred             -EecCCCCceEEEEEccCC
Q 009614          465 -DYTDIREIVSAVCYCPDG  482 (531)
Q Consensus       465 -~~~~~~~~v~~v~~spdg  482 (531)
                       ....|...|++|+|.|..
T Consensus       287 ~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  287 AVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eEeeecccceeEEEeeecc
Confidence             578889999999998865

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.7e-14  Score=141.51  Aligned_cols=227  Identities=17%  Similarity=0.236  Sum_probs=153.8

Q ss_pred             ccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc---cccceEEcccCCCEEEEEEccCCCEE
Q 009614          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS---LYTGQEFLAHEGSILTMKFSLDGQYL  299 (531)
Q Consensus       223 ~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~---~~~~~~l~~H~~~I~~l~fspdg~~L  299 (531)
                      .-..++-++..|...|-|+++.+++..+.+|+-||.|+.|++.........   ......+.||++.||.+++|+....|
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L  411 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL  411 (577)
T ss_pred             cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce
Confidence            334556678899999999999999999999999999999988733222211   12334688999999999999999999


Q ss_pred             EEEeCCCcEEEEEcccCccccceecCCCCC--eeEEEeecCCcc-eeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDP--SCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       300 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      ++++.||++++|+...... ..+.......  ..+.+....... +.........+...     .....+.+++...   
T Consensus       412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~-----ev~s~~~~~~s~~---  482 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDM-----EVVSDLLIFESSA---  482 (577)
T ss_pred             eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhh-----hhhhheeeccccC---
Confidence            9999999999999866554 3333222222  222222111000 00000000000000     0000001110000   


Q ss_pred             cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                           .....-...+.-+.++|.+ ..+++..|+.|+++|..++..+.... |...++++++.| ++.+|++++.|+.|+
T Consensus       483 -----~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  483 -----SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVR  556 (577)
T ss_pred             -----CCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceee
Confidence                 0001112357788889988 99999999999999999999987764 999999999999 999999999999999


Q ss_pred             EEeCCCCeEE
Q 009614          455 IWEVRRCQVV  464 (531)
Q Consensus       455 Iwd~~~~~~~  464 (531)
                      +|.+....++
T Consensus       557 l~kld~k~~~  566 (577)
T KOG0642|consen  557 LWKLDVKTCV  566 (577)
T ss_pred             hhhccchhee
Confidence            9999877665

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.56  E-value=1.1e-13  Score=129.47  Aligned_cols=223  Identities=20%  Similarity=0.316  Sum_probs=149.4

Q ss_pred             eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC---CEEEEEEccCCCEEEEEeCCCcEEEEEc-ccCcc
Q 009614          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGEDGTVRVWKV-IEHER  318 (531)
Q Consensus       243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~Dg~I~iWd~-~~~~~  318 (531)
                      -.|+..++|+.+.+.-|++||.-+++...+  +.   ...|..   +-.+++|+|||.+|+.| ....|+++|+ +.|..
T Consensus       119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraS--y~---~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~  192 (406)
T KOG2919|consen  119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRAS--YR---AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD  192 (406)
T ss_pred             CCCccceeeeccccCceeeeeccccccccc--hh---hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence            357788999999999999999987765432  11   112332   34689999999999866 5678999999 44443


Q ss_pred             ccceec-------CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          319 LDGFDV-------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       319 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      ...+..       ...-+.|+.+.+.....+..-..             +...-++.++.      ..|+..+.+|.+.|
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------------~q~~giy~~~~------~~pl~llggh~gGv  253 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------------GQRVGIYNDDG------RRPLQLLGGHGGGV  253 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeecc-------------cceeeeEecCC------CCceeeecccCCCe
Confidence            222211       12223344444433222211110             00111222221      35788889999999


Q ss_pred             eEEEEcCCC-eEEEEe-CCCcEEEEECCCC-eEEEEee-cCC-ceEEEEE--eeCCCCEEEEEeCCCeEEEEeCCC-Ce-
Q 009614          392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGID-RCLRVFS-HNN-YVTSVAF--NPVDDNYFISGSIDGKVRIWEVRR-CQ-  462 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~-~~l~~~~-h~~-~V~sv~f--sp~d~~~l~sgs~Dg~I~Iwd~~~-~~-  462 (531)
                      +.|.|.++| .|++|+ .|..|..||++.. .++..+. |.. .-..|.|  .| ++++|++|+.||.|++||+.+ +. 
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc
Confidence            999999999 888887 4778999999853 4444442 433 3334444  57 889999999999999999998 55 


Q ss_pred             EEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (531)
Q Consensus       463 ~~~~~~~~~~v~~v~~spdg~~l~sgs~d  491 (531)
                      +..+..+...++.++++|--.++++++..
T Consensus       333 ~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccccccccccccceecCcccceeeeccCc
Confidence            44577888899999999998888887743

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3e-13  Score=129.22  Aligned_cols=250  Identities=13%  Similarity=0.140  Sum_probs=164.3

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      +..|.+.++++.|+.++++||+|+.|..++||++...-.... ..+.+.. ..|...|.|++|....++|++|+.+++|.
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            556778899999999999999999999999999874322111 1122222 23568999999999999999999999999


Q ss_pred             EEEcccCccccceecCCC--CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          310 VWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      +.|+.+.+.+..+.....  .+..+...+.  .              ...+..+.++.+.+|+.+.......++. +...
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--D--------------N~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~  193 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPT--D--------------NTLIVVTRAKLVSFIDNRDRQNPISLVL-PANS  193 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCC--C--------------ceEEEEecCceEEEEeccCCCCCCceee-ecCC
Confidence            999998876655443322  2222222221  1              1123334455566666554332222222 1223


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----------------------------------------------
Q 009614          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----------------------------------------------  419 (531)
Q Consensus       388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~----------------------------------------------  419 (531)
                      ......+.|+|..  +|++.+..+-+-+||++..                                              
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            3445566666655  6666666666677766421                                              


Q ss_pred             ---e-EEEEeecCC-------ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC------------------------CeEE
Q 009614          420 ---R-CLRVFSHNN-------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------------------------CQVV  464 (531)
Q Consensus       420 ---~-~l~~~~h~~-------~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~------------------------~~~~  464 (531)
                         + .+..+.|+.       .+.+++|-  +...+++|+.+-.|+||.+..                        +...
T Consensus       274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             ecccceeEeccCCCCcceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence               1 111122322       34556665  455699999999999998753                        1123


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .+.+|...+..|.|+|...+|++.+..+.++||.-.
T Consensus       352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             EEecccccccceeecCCcceEeccchhhheeccccc
Confidence            478899999999999999999999999999999754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.55  E-value=6.6e-12  Score=128.29  Aligned_cols=233  Identities=30%  Similarity=0.458  Sum_probs=173.7

Q ss_pred             eCCCC-eEEee-ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcccCcccc
Q 009614          244 KPGDH-ELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLD  320 (531)
Q Consensus       244 spdg~-~lasg-s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~  320 (531)
                      ++++. .++.. ..++.+.+|+...      .......+..|...|..++|+|++.++++++. |+.+++|++.++....
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            67777 44443 4499999999885      12233457889999999999999999999986 9999999999877776


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee-EeecCCCCeeEEEEcCC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~l~~sp~  399 (531)
                      .+..+...+.++.+.+...               ......+.++.+.+|+..    ....+. .+.+|.... ...|+|+
T Consensus       193 ~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~  252 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGG---------------LLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPD  252 (466)
T ss_pred             eeccCCCceEEEEEcCCcc---------------eEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCC
Confidence            6666666666666663322               111223566666677444    223344 577888775 4489999


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeE-EEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe---cCCCCce
Q 009614          400 G-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---TDIREIV  473 (531)
Q Consensus       400 ~-~l~s~s~Dg~V~lwdl~~~~~-l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~---~~~~~~v  473 (531)
                      + .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+.+|+..+......   ..|...+
T Consensus       253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
T COG2319         253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV  331 (466)
T ss_pred             CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence            8 888999999999999986664 4444 5889999999999 888888899999999999998876643   2566679


Q ss_pred             EEEEEccCCCEEEEE-eCCCcEEEEeCCCCe
Q 009614          474 SAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQ  503 (531)
Q Consensus       474 ~~v~~spdg~~l~sg-s~dg~I~iwd~~~~~  503 (531)
                      ..+.|.+++..++.+ ..|+.+++|++....
T Consensus       332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            999994343566665 678999999998877

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.3e-13  Score=146.01  Aligned_cols=242  Identities=14%  Similarity=0.210  Sum_probs=168.5

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCc---cc-ccccccceE-EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQS---RE-LSSLYTGQE-FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~---~~-~~~~~~~~~-l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      |..++++|+.||.|+||+-....   .+ ++.....+. +.+-.+.=.-+.|.....+|+++|+-..|+|||........
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            44578899999999999654322   11 111111111 11122222456888877778888888999999998877666


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC--eeEEEEcC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE--VLDLSWSK  398 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--I~~l~~sp  398 (531)
                      .++.....  ++          .+  ...........+.+-.|+.+.+|+.+.-.. ..++...+.|+..  |..+.+.+
T Consensus      1202 diP~~s~t--~v----------Ta--LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1202 DIPYGSST--LV----------TA--LSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             ecccCCCc--cc----------ee--ecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeec
Confidence            55443221  11          11  111111233446677888899998776443 2567788889887  99999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEe---ec---CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe----
Q 009614          399 NG--FLLSSSADKTVRLWQVGIDRCLRVF---SH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----  466 (531)
Q Consensus       399 ~~--~l~s~s~Dg~V~lwdl~~~~~l~~~---~h---~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~----  466 (531)
                      +|  .|++|+.||.|++||++.......+   .|   .+.++++..|+ +..++|+|+. +.|+||++...++..+    
T Consensus      1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred             CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence            88  7999999999999999985322222   22   33599999999 8999999998 9999999987654322    


Q ss_pred             ---cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          467 ---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       467 ---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                         ......+.+++|||.--++|+|..|..|.||....+++
T Consensus      1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence               22345689999999999999999999999998876543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.55  E-value=9.2e-13  Score=141.86  Aligned_cols=278  Identities=11%  Similarity=0.088  Sum_probs=176.2

Q ss_pred             hcccccccccc---ceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC
Q 009614          220 VKRGWLKKLGA---MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD  295 (531)
Q Consensus       220 ~~~~w~~~~~~---~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd  295 (531)
                      ..++|.-+-..   +..|...+..++.++ ++.++++|+.||+|+||+..+............++.--...+.++...+.
T Consensus      1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            33455443322   333444555555555 45999999999999999999776664455555556556788999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe-ecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                      ++.+|.++.||.|++.++......+...      .+.... ....+.++.+............+..+..+.++.|+.+..
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVA------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEcccccccccee------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence            9999999999999999987631110000      000000 000001111110000000112344555667788887653


Q ss_pred             cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCC--CEEEEEe-
Q 009614          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDD--NYFISGS-  448 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~--~~l~sgs-  448 (531)
                      ....  ........|.|++++.+|.+ .++.|+..|.+.+||++-+.++..+.  +..+++.+..+|..+  ...++++ 
T Consensus      1184 ~~~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             hhHH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence            2211  11223346789999999998 99999999999999999999998886  446788888887544  4555544 


Q ss_pred             -CCCeEEEEeCCCCeEEE--ecC------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          449 -IDGKVRIWEVRRCQVVD--YTD------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       449 -~Dg~I~Iwd~~~~~~~~--~~~------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                       ..+.|.+|++.++....  +..                  +.-.....++...+..+++|+.|+.|+.||....+..
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence             47789999999875332  222                  1111222333444567899999999999998776554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.8e-13  Score=139.57  Aligned_cols=216  Identities=14%  Similarity=0.164  Sum_probs=142.8

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCC
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDG  306 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg  306 (531)
                      +..+...+.+..|+|||+.|+..+.+   ..|++||+..+....     ...+.+|   ...++|+|||+.|+.++ .+|
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~---~~~~~wSPDG~~La~~~~~~g  270 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH---NGAPAFSPDGSRLAFASSKDG  270 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc---cCceeECCCCCEEEEEEecCC
Confidence            34444566778999999999887643   479999987543221     1123334   34689999999888765 688


Q ss_pred             cEEEEEc--ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          307 TVRVWKV--IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       307 ~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      .+.||.+  .++.                                                               ...+
T Consensus       271 ~~~Iy~~d~~~~~---------------------------------------------------------------~~~l  287 (429)
T PRK01742        271 VLNIYVMGANGGT---------------------------------------------------------------PSQL  287 (429)
T ss_pred             cEEEEEEECCCCC---------------------------------------------------------------eEee
Confidence            7777654  2221                                                               1122


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEE-eCCCcEEEEECCCC-eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~-s~Dg~V~lwdl~~~-~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      ..+...+....|+|+| .|+.+ ..++...||++... .....+.+..  .+..|+| ++++|+..+.++ +.+||+.++
T Consensus       288 t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g  363 (429)
T PRK01742        288 TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSG  363 (429)
T ss_pred             ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCC
Confidence            3345567789999999 55544 46788888876532 2223334443  4678999 999998887765 566999988


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~--~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +...+.... ....+.|+|||++|+.++.+|.+.+|.+.  +|+.++++.        .+...+...+|+|
T Consensus       364 ~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--------~~~g~~~~p~wsp  425 (429)
T PRK01742        364 STEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--------GSDGQVKFPAWSP  425 (429)
T ss_pred             CeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------CCCCCCCCcccCC
Confidence            765443222 34568899999999999999988888753  455554432        1223556677776

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=6e-13  Score=141.19  Aligned_cols=277  Identities=14%  Similarity=0.177  Sum_probs=171.5

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ...+.|+|-...++++.....|.|||..+...- ..+...   ......|+.|.+-.  |..+|++|+.||.|+||+-..
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-NGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCcee-ccccCC---CCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            334789999999999998899999999876542 111111   11245788888854  556899999999999997533


Q ss_pred             Cc-cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeE
Q 009614          316 HE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLD  393 (531)
Q Consensus       316 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~  393 (531)
                      .. ...++-..-.....+.......+.++.+....+     ..+..+.-..+.+|+...-..    ++.+ .+...-|+.
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-----~Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-----HLLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTA 1213 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCC-----eEEecCCeeEEEEEeccccee----EeecccCCCcccee
Confidence            22 111111111111111111122222222222221     223344456678888755322    2221 223445666


Q ss_pred             EEEcCC-C-eEEEEeCCCcEEEEECCCCeE---EEEee-cCCc--eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614          394 LSWSKN-G-FLLSSSADKTVRLWQVGIDRC---LRVFS-HNNY--VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (531)
Q Consensus       394 l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~---l~~~~-h~~~--V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-  464 (531)
                      +.-+.. | .+++|..||.|++||.+....   +..++ |+..  |..+.+.+..-..|++|+.||.|++||++..... 
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence            654433 4 999999999999999986543   34443 7766  9999998833346999999999999999984322 


Q ss_pred             --EecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          465 --DYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       465 --~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                        ....|   ....+++..|++...+|+|+. +.|+||++...++ ..++.. .+--......+..+.|.|
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n-~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYN-PGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccC-cccccCcCCCcceeeecc
Confidence              22222   235899999999999999998 9999999985544 222211 110112224558888877

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.3e-12  Score=120.68  Aligned_cols=117  Identities=19%  Similarity=0.458  Sum_probs=94.2

Q ss_pred             CCCeeEEEEcCCC-eE--EEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCC
Q 009614          388 SSEVLDLSWSKNG-FL--LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC  461 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l--~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~  461 (531)
                      .++|.+++|+|+| .|  +.|..++.|.+||++ ++.+..+. ...++.|.|+| +|++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence            4579999999999 54  345577899999996 56666664 56788999999 99999998754   67999999999


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeEEEEee
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~l~~~~~  509 (531)
                      +.+....|.. ++.++|+|||++|++++.      |+.++||+.. |+++.+..
T Consensus       136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            8887666554 789999999999999875      7889999996 66665443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=4.3e-13  Score=133.14  Aligned_cols=226  Identities=18%  Similarity=0.282  Sum_probs=157.5

Q ss_pred             eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccc
Q 009614          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDG  321 (531)
Q Consensus       243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~  321 (531)
                      -.|.+--++.|-.-|.|.+.+...  .+++.++... ..-.+..|+|++|-|. ...++.+-.+|.+.++|..-..    
T Consensus       181 a~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----  253 (636)
T KOG2394|consen  181 ATPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----  253 (636)
T ss_pred             cCCCCcceEEeeccCceEEecchh--hHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----
Confidence            356677788888889999988765  2333322221 1123478999999994 4466667789999999872110    


Q ss_pred             eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-
Q 009614          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (531)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-  400 (531)
                         ....+   .+........+                     .+..+-...   ...|+..+.--.+.|+.++|+|+| 
T Consensus       254 ---~~t~p---~~~~~k~~~~f---------------------~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~  303 (636)
T KOG2394|consen  254 ---GATAP---SYQALKDGDQF---------------------AILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGK  303 (636)
T ss_pred             ---cCCCC---cccccCCCCee---------------------EEeeeeccc---cCCccceeEeccccccceeEcCCCc
Confidence               00000   00000000000                     111111000   113455555556799999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEE
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCY  478 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~  478 (531)
                      +|++.+.||.+||||..+.+.+..+. .-+...|++|+| |++||++|+.|.-|.||.+..++++. -.+|+.+|+.|+|
T Consensus       304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF  382 (636)
T ss_pred             eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence            99999999999999999888777665 457789999999 99999999999999999999999985 6899999999999


Q ss_pred             cc-------------------------------C----C-------------CEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          479 CP-------------------------------D----G-------------KGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       479 sp-------------------------------d----g-------------~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      .|                               +    +             -.+.+.+.|-.+.+||+..-.+..
T Consensus       383 Dpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  383 DPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence            83                               0    1             136677889999999998776655

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2e-13  Score=130.47  Aligned_cols=168  Identities=26%  Similarity=0.334  Sum_probs=139.6

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      +.+.+|.+.|++|.|+.++++|++|+.|..+++|++...-..+.                                    
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~------------------------------------   93 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT------------------------------------   93 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC------------------------------------
Confidence            45789999999999999999999999999999999854321100                                    


Q ss_pred             cccCCCceEEEeCCccccccCcceeEee-cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCC---ceE
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---YVT  432 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~---~V~  432 (531)
                                          .+|+.... .|...|.||+|.-.+ .+++|..+++|.+.|+.+.+.+.++.|..   .|+
T Consensus        94 --------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY  153 (609)
T KOG4227|consen   94 --------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY  153 (609)
T ss_pred             --------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee
Confidence                                12333332 366899999999877 99999999999999999999999998776   999


Q ss_pred             EEEEeeCCCCEEEEEeCCCeEEEEeCCCCe----EEEecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCC
Q 009614          433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       433 sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~  502 (531)
                      .+..+| ..+.|++.+.++.|.+||.+..+    ++...........+.|+|.. .+|++++..|-+.+||.+..
T Consensus       154 ~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  154 HMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             ecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            999999 68999999999999999998754    44556667788999999954 67788999999999998753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2.3e-13  Score=128.35  Aligned_cols=205  Identities=16%  Similarity=0.227  Sum_probs=147.6

Q ss_pred             ceeeeccccceeeeC--CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeC---
Q 009614          231 MARIIDRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---  304 (531)
Q Consensus       231 ~~~~~~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---  304 (531)
                      +..+...++.+.|..  ....+.+++.||+|++||++.......     ..+.+|. .+-.+++.+..++.+++|..   
T Consensus        66 fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~-----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~  140 (376)
T KOG1188|consen   66 FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR-----ISWTQQSGTPFICLDLNCKKNIIACGTELTR  140 (376)
T ss_pred             ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----eeccCCCCCcceEeeccCcCCeEEecccccc
Confidence            444445555666665  456788999999999999996554322     2344555 46777887777888888753   


Q ss_pred             -CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          305 -DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       305 -Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                       |-.|.+||++..+...                                                            -.-
T Consensus       141 s~A~v~lwDvR~~qq~l------------------------------------------------------------~~~  160 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLL------------------------------------------------------------RQL  160 (376)
T ss_pred             CceEEEEEEeccccchh------------------------------------------------------------hhh
Confidence             6778999987665310                                                            111


Q ss_pred             eecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC----eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~----~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      ...|...|++|.|+|+.  +|++|+.||.|.|||+...    ..+.++.|...|.++.|....-+.|.+-+..+...+|+
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE  240 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence            35699999999999987  9999999999999999754    34566778888999999873334677778888899998


Q ss_pred             CCCCeEE--------------------------------------------------------------Eec-CCCCceE
Q 009614          458 VRRCQVV--------------------------------------------------------------DYT-DIREIVS  474 (531)
Q Consensus       458 ~~~~~~~--------------------------------------------------------------~~~-~~~~~v~  474 (531)
                      +..+...                                                              .+. +|...|.
T Consensus       241 le~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR  320 (376)
T KOG1188|consen  241 LEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR  320 (376)
T ss_pred             ccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence            7643200                                                              011 1333456


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          475 AVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ++.|...+..+.+|+.||.+.+|...
T Consensus       321 ~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  321 DILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             HHhhhcccceeeccCCCceEEEEecC
Confidence            66676677899999999999999853

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=2.2e-11  Score=116.28  Aligned_cols=218  Identities=16%  Similarity=0.231  Sum_probs=156.4

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC-CCeeEEE
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYF  334 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~  334 (531)
                      ...+++.+.++......      .  -...+|.+|.++.  +.|+.+-.+. |.|||+.+.+.+.++..... .....++
T Consensus        67 pr~Lkv~~~Kk~~~ICe------~--~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   67 PRKLKVVHFKKKTTICE------I--FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             CceEEEEEcccCceEEE------E--ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEee
Confidence            35688888875432211      1  1346799999974  4577776654 99999999999998876633 3335556


Q ss_pred             eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCc-EE
Q 009614          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VR  412 (531)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~-V~  412 (531)
                      +++..+...+..            .....+.+++|+....    +++..+..|.+.+-+|+|+++| +|||++..|+ ||
T Consensus       136 S~n~~n~ylAyp------------~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR  199 (391)
T KOG2110|consen  136 SPNNANCYLAYP------------GSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR  199 (391)
T ss_pred             ccCCCCceEEec------------CCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence            665544433332            1223667888876553    5678889999999999999999 9999999998 78


Q ss_pred             EEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-------------------------
Q 009614          413 LWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-------------------------  464 (531)
Q Consensus       413 lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-------------------------  464 (531)
                      |+.+.+|+.+..|+   ....|.+++|+| ++.+|++.+..++|+||.+.....-                         
T Consensus       200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps  278 (391)
T KOG2110|consen  200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPS  278 (391)
T ss_pred             EEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcch
Confidence            99999999999997   456789999999 9999999999999999988642200                         


Q ss_pred             -------------EecCCCCce-EEEEEc--cCCCEEEEEeCCCcEEEEeCCC
Q 009614          465 -------------DYTDIREIV-SAVCYC--PDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       465 -------------~~~~~~~~v-~~v~~s--pdg~~l~sgs~dg~I~iwd~~~  501 (531)
                                   ......... ..+.+.  +....+.+++.||.++.|.+.-
T Consensus       279 ~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  279 QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                         000000111 222333  4678899999999999998753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=6.7e-12  Score=119.72  Aligned_cols=233  Identities=14%  Similarity=0.192  Sum_probs=158.8

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC--CcEEEEEcccC
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVIEH  316 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D--g~I~iWd~~~~  316 (531)
                      +...|..+...|..|+.+| .+++......+-.       ......-.|.-+-|+..  ++|..+.+  +.+++.+++.+
T Consensus         9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-------~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-------SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             eeeeeccceeEEEccCCCc-eeEEecCchHHhh-------cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence            3456888999999999988 5777766433311       11112335666777644  55555544  34888888776


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      ..+..+..+..   .+....+....++++                 ...+++|+.+...+... +.....+...+..++.
T Consensus        79 ~~ICe~~fpt~---IL~VrmNr~RLvV~L-----------------ee~IyIydI~~MklLhT-I~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   79 TTICEIFFPTS---ILAVRMNRKRLVVCL-----------------EESIYIYDIKDMKLLHT-IETTPPNPKGLCALSP  137 (391)
T ss_pred             ceEEEEecCCc---eEEEEEccceEEEEE-----------------cccEEEEecccceeehh-hhccCCCccceEeecc
Confidence            65554432221   222222222222211                 22377787776554321 1122235566777777


Q ss_pred             cCCC-eEEEE--eCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCeEEE-ecC--
Q 009614          397 SKNG-FLLSS--SADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVD-YTD--  468 (531)
Q Consensus       397 sp~~-~l~s~--s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~~~~-~~~--  468 (531)
                      ++.+ +|+--  ...|.|.|||+.+-+.+..+. |.+.+.|++|+| +|.+||++|..|+ |||+.+.+++.+. +..  
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~  216 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT  216 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence            7766 77643  346889999999999988886 999999999999 9999999999987 7999999998774 322  


Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      ....|.+++|+||+++|++.+..++|+||.+....
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            24568999999999999999999999999987644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=5.2e-14  Score=139.69  Aligned_cols=163  Identities=26%  Similarity=0.445  Sum_probs=129.3

Q ss_pred             cceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      ..+++.||++-|+|+.|+.+|.+|++|++|-.+.|||.-..+.+..                                  
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs----------------------------------   87 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS----------------------------------   87 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------------------
Confidence            4467899999999999999999999999999999999864432211                                  


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCC----------CeEE
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGI----------DRCL  422 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~----------~~~l  422 (531)
                                                 .-.+|...|.++.|-|..   .+++|..|+.|+++|+..          ....
T Consensus        88 ---------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~  140 (758)
T KOG1310|consen   88 ---------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT  140 (758)
T ss_pred             ---------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence                                       125799999999999953   899999999999999974          2233


Q ss_pred             EEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-----------EecCCCCceEEEEEccC-CCEEEEEe
Q 009614          423 RVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPD-GKGGIVGT  489 (531)
Q Consensus       423 ~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-----------~~~~~~~~v~~v~~spd-g~~l~sgs  489 (531)
                      ..+. |...|..|+-.|...+.|.+++.||+|+-+|++....-           .+...--...++..+|. ..+|++|+
T Consensus       141 ~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg  220 (758)
T KOG1310|consen  141 RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG  220 (758)
T ss_pred             hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC
Confidence            3333 88999999999955699999999999999999873211           11222234577888885 46889999


Q ss_pred             CCCcEEEEeC
Q 009614          490 MTGNCRFYDI  499 (531)
Q Consensus       490 ~dg~I~iwd~  499 (531)
                      .|-..++||.
T Consensus       221 sdpfarLYD~  230 (758)
T KOG1310|consen  221 SDPFARLYDR  230 (758)
T ss_pred             CCchhhhhhh
Confidence            9999999994

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.49  E-value=9.3e-13  Score=123.28  Aligned_cols=159  Identities=18%  Similarity=0.298  Sum_probs=134.0

Q ss_pred             cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCC
Q 009614          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (531)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (531)
                      -..+|+|.+|++|+..+|.+.....|.||.....+.                                            
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------   44 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------   44 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence            357899999999999999999999999998754431                                            


Q ss_pred             CceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeE---EEEeecCCceEEEEEe
Q 009614          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRC---LRVFSHNNYVTSVAFN  437 (531)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl-~~~~~---l~~~~h~~~V~sv~fs  437 (531)
                                     -++.+++..|...|+.|.|+|.. .|++|+.|..-++|.. ..++.   +..++++..+++|.|+
T Consensus        45 ---------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws  109 (361)
T KOG1523|consen   45 ---------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS  109 (361)
T ss_pred             ---------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence                           13467788999999999999998 9999999999999998 44443   3344699999999999


Q ss_pred             eCCCCEEEEEeCCCeEEEEeCCCCeEE-----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          438 PVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       438 p~d~~~l~sgs~Dg~I~Iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      | .++.||+|+....|.||-.....--     .-..+...|+++.|+|++-+|++|+.|+.+|+|..--
T Consensus       110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI  177 (361)
T KOG1523|consen  110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI  177 (361)
T ss_pred             C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee
Confidence            9 9999999999999999988764422     1344567899999999999999999999999998643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=4.5e-12  Score=132.93  Aligned_cols=280  Identities=18%  Similarity=0.205  Sum_probs=184.4

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC---CEEEEEeCCCcEEEEEcccCc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      ..|++|+++++... ...|+||...++...       ..+.+|..+++.+.+.|..   .++++++.||.|++||...+.
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-------~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGECI-------TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE   93 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHhhh-------hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence            57999999887775 578999998865543       3588999999999998843   478899999999999999998


Q ss_pred             cccceecCCCCCeeEEEeecC-------------Ccceeeeecccc--------------cc--------ccccccccCC
Q 009614          318 RLDGFDVQDTDPSCLYFTINH-------------LSQLIPIDVDKE--------------KI--------DKTKSLRKSS  362 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--------------~~--------~~~~~~~~~~  362 (531)
                      .++.+........... .+..             ...+........              ..        ........+.
T Consensus        94 Llkt~~~~~~v~~~~~-~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g  172 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVY-KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG  172 (792)
T ss_pred             EEEEEecCCceeEEEe-chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence            8877755433221111 0000             000000000000              00        0000111111


Q ss_pred             CceEEEeCCccccc--cC--c---ceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC----CeEEEEee-cCC
Q 009614          363 DLTCVVLPPKVFRL--LE--K---PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVFS-HNN  429 (531)
Q Consensus       363 ~~~~~~~~~~~~~~--~~--~---~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~----~~~l~~~~-h~~  429 (531)
                      ....++.....+..  ..  +   ....-..|...+++.++||++ +++++..||.|.+|.--.    ......+. |..
T Consensus       173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence            22222211111111  00  0   011113366778999999999 999999999999996322    12233444 889


Q ss_pred             ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .|++++|++ +|.+|++|+..|.+.+|.+.+++..-+.....+|..+.++||+.+.++...|+.|++-.+.+..+...++
T Consensus       253 ~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs  331 (792)
T KOG1963|consen  253 EVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS  331 (792)
T ss_pred             ccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence            999999999 9999999999999999999999866677888999999999999999999999999999987776665554


Q ss_pred             eeecc---cccCCCceeeeEEEee
Q 009614          510 ICLQG---KKKLPGKRITGFQVVK  530 (531)
Q Consensus       510 ~~~~~---~kk~~~~~It~l~f~p  530 (531)
                      .....   .|+-+..-.+++.+.|
T Consensus       332 gi~~~~~~~k~~~~~l~t~~~idp  355 (792)
T KOG1963|consen  332 GIKPPTPSTKTRPQSLTTGVSIDP  355 (792)
T ss_pred             CccCCCccccccccccceeEEEcC
Confidence            22111   1222344556666655

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=2.4e-12  Score=123.60  Aligned_cols=204  Identities=15%  Similarity=0.252  Sum_probs=152.4

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCC--CcEEEEEcccCccccceec
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED--GTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D--g~I~iWd~~~~~~~~~~~~  324 (531)
                      ..|++|-.+|.+.+|..+.+...-+.+   ..+..| ..+..|.-++... .+|+||..  ..++|||+.+.+.+..-..
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l---~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKL---IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccc---eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence            456777889999999988443211111   123333 5677777777544 55668888  8899999987754322211


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--C-e
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-F  401 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--~-~  401 (531)
                      ......                                +..+                     .-+++++.|-+.  . .
T Consensus       192 vpnD~L--------------------------------~LrV---------------------PvW~tdi~Fl~g~~~~~  218 (412)
T KOG3881|consen  192 VPNDRL--------------------------------GLRV---------------------PVWITDIRFLEGSPNYK  218 (412)
T ss_pred             CCCccc--------------------------------ccee---------------------eeeeccceecCCCCCce
Confidence            111000                                0011                     124566777765  4 9


Q ss_pred             EEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEE
Q 009614          402 LLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVC  477 (531)
Q Consensus       402 l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~  477 (531)
                      |++++.-+.||+||.+.+ +++..|. ...+++++...| +++++++|..-|.+..||++++++.  .+.+..+.|++|.
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih  297 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH  297 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence            999999999999999864 5677776 678899999999 9999999999999999999999987  3788999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       478 ~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .+|.+++|++++.|..|||+|+++.+++.+..
T Consensus       298 ~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  298 CHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             EcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            99999999999999999999999988876554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.2e-11  Score=128.89  Aligned_cols=214  Identities=12%  Similarity=0.076  Sum_probs=138.2

Q ss_pred             eccccceeeeCCCCeEEeee---cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCC--cE
Q 009614          235 IDRHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--TV  308 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs---~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~I  308 (531)
                      ...+.+.+|+|||+.|+..+   ....|.+|++..+...        .+....+.+..+.|+|||+.|+.. +.+|  .|
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence            34455789999999998643   3457999998754422        112223334568999999988765 4455  47


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .+||+.+++..                                                               .+..+.
T Consensus       270 ~~~d~~tg~~~---------------------------------------------------------------~lt~~~  286 (429)
T PRK03629        270 YVMDLASGQIR---------------------------------------------------------------QVTDGR  286 (429)
T ss_pred             EEEECCCCCEE---------------------------------------------------------------EccCCC
Confidence            77887654311                                                               111223


Q ss_pred             CCeeEEEEcCCC-eEEEEeCC-Cc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCC
Q 009614          389 SEVLDLSWSKNG-FLLSSSAD-KT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC  461 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~D-g~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~  461 (531)
                      ..+....|+|+| .|+..+.+ +.  |.++|+.++.......+........|+| ++++|+..+.+   ..|.+||+.++
T Consensus       287 ~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        287 SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCC
Confidence            346678999999 67666643 44  4555777766544433455567889999 89888776543   35889999988


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeCCCc---EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN---CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~---I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +...+... .......|+|||++|+.++.++.   +.++++..+. ...+.        .+...+...+|+|
T Consensus       366 ~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~--------~~~~~~~~p~Wsp  427 (429)
T PRK03629        366 GVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP--------ATDGQVKFPAWSP  427 (429)
T ss_pred             CeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECc--------cCCCCcCCcccCC
Confidence            76655432 23456789999999999988765   6777875433 33222        1224566677776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.45  E-value=8.8e-11  Score=118.47  Aligned_cols=245  Identities=12%  Similarity=0.135  Sum_probs=146.9

Q ss_pred             ccceeeeCCCCeEEee-ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccc
Q 009614          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~lasg-s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~  315 (531)
                      ...++++|++++|+++ ..++.|.+|++.... .+.   ...... ..+....|+|+|+|++|++++. ++.|.+|++.+
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~l~---~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-ALT---FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCC-ceE---Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            4458999999988765 458899999986321 111   111111 2335678999999999888764 88999999964


Q ss_pred             Cccc-cceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc-ccCc--ceeEeecCCC
Q 009614          316 HERL-DGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-LLEK--PLHEFQGHSS  389 (531)
Q Consensus       316 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~h~~  389 (531)
                      .... .....  ....+..+.+.++.. .+              .+....+..+.+|+..... +...  ...... ...
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~-~l--------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~  175 (330)
T PRK11028        112 DGIPVAPIQIIEGLEGCHSANIDPDNR-TL--------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGA  175 (330)
T ss_pred             CCCCCCceeeccCCCcccEeEeCCCCC-EE--------------EEeeCCCCEEEEEEECCCCcccccCCCceecC-CCC
Confidence            3221 11111  111122222322221 11              1223344566666654311 1100  001111 123


Q ss_pred             CeeEEEEcCCC-eEEEEeC-CCcEEEEECCC--Ce--EEEEee-------cCCceEEEEEeeCCCCEEEEEe-CCCeEEE
Q 009614          390 EVLDLSWSKNG-FLLSSSA-DKTVRLWQVGI--DR--CLRVFS-------HNNYVTSVAFNPVDDNYFISGS-IDGKVRI  455 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~-Dg~V~lwdl~~--~~--~l~~~~-------h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~I  455 (531)
                      ....++|+|++ +++++.. +++|.+|++..  ++  .+..+.       +......+.++| ++++++++. .++.|.+
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV  254 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence            46789999999 6766655 89999999973  32  233332       112334688999 899888875 4789999


Q ss_pred             EeCCCCe----EEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCeE
Q 009614          456 WEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQL  504 (531)
Q Consensus       456 wd~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~--~~~l  504 (531)
                      |++....    .+...........+.++|||++|+++.. +++|.+|++.  ++.+
T Consensus       255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence            9986432    2222222235567999999999998776 8899999874  4554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.7e-11  Score=128.14  Aligned_cols=199  Identities=17%  Similarity=0.197  Sum_probs=133.0

Q ss_pred             ceeeeccccceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCC
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG  306 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg  306 (531)
                      +..+...+.+.+|+|||+.|+..+.   ...|.+|++..+...        .+..+.+...+++|+|||+.|+ +.+.+|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------LVASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence            3334445667899999999987663   346999998754432        2333444556789999999775 445555


Q ss_pred             --cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          307 --TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       307 --~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                        .|.+||+.+++.                                                               ..+
T Consensus       271 ~~~Iy~~d~~~g~~---------------------------------------------------------------~~l  287 (433)
T PRK04922        271 NPEIYVMDLGSRQL---------------------------------------------------------------TRL  287 (433)
T ss_pred             CceEEEEECCCCCe---------------------------------------------------------------EEC
Confidence              488888765531                                                               111


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeC-CCc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEe
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSA-DKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWE  457 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~-Dg~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd  457 (531)
                      ..+.......+|+|+| .|+.++. ++.  |.++|+.+++......+......++|+| ++++|+..+.++   .|.+||
T Consensus       288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d  366 (433)
T PRK04922        288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMD  366 (433)
T ss_pred             ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEE
Confidence            2233334567899999 6666553 444  6777777776544433445566789999 999888765443   699999


Q ss_pred             CCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q 009614          458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDN  502 (531)
Q Consensus       458 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~  502 (531)
                      +.+++...+.. ........|+|||++|+..+.+   +.|.++++..+
T Consensus       367 ~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        367 LSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            98887665443 2245567999999998877653   35788888643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.44  E-value=6.9e-12  Score=131.11  Aligned_cols=229  Identities=18%  Similarity=0.225  Sum_probs=152.8

Q ss_pred             CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCccc--cceecCCCCCeeEE
Q 009614          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERL--DGFDVQDTDPSCLY  333 (531)
Q Consensus       257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~~  333 (531)
                      +.+.||+++.....-       ....-...|.+++|+| +..+||.|..+|.|.+||+..+...  ..+..         
T Consensus       222 ~~~~vW~~~~p~~Pe-------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~---------  285 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPE-------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA---------  285 (555)
T ss_pred             ceEEEEecCCCCCce-------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------
Confidence            479999998652211       1223467899999999 6778888999999999999877652  11111         


Q ss_pred             EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC-c-ceeEee------cCCCCeeEEEEcCCC--eEE
Q 009614          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-K-PLHEFQ------GHSSEVLDLSWSKNG--FLL  403 (531)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~------~h~~~I~~l~~sp~~--~l~  403 (531)
                      ....+...+..+.+...... ...++.+.|+.+..|+.+...... . +.....      .....+++++|.+..  .++
T Consensus       286 ~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi  364 (555)
T KOG1587|consen  286 LEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI  364 (555)
T ss_pred             ccccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence            11111122222222222223 445667779999999776654421 1 111111      223468999999876  999


Q ss_pred             EEeCCCcEEEEECC---CCe-----EEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC-CCeEE-EecCCCCc
Q 009614          404 SSSADKTVRLWQVG---IDR-----CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVV-DYTDIREI  472 (531)
Q Consensus       404 s~s~Dg~V~lwdl~---~~~-----~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~-~~~~~-~~~~~~~~  472 (531)
                      .|+.+|.|.-=...   ...     .+..+ .|.++|+++.++|.....|++++ |.+|+||... ...++ .+..+...
T Consensus       365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~  443 (555)
T KOG1587|consen  365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY  443 (555)
T ss_pred             EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence            99999998773322   222     11122 38999999999996666777766 9999999987 44444 56667777


Q ss_pred             eEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe
Q 009614          473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       473 v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      |++++|||-- ..++++..||.|.|||+....
T Consensus       444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             eeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            9999999976 456778889999999996543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=1.1e-11  Score=114.52  Aligned_cols=151  Identities=21%  Similarity=0.445  Sum_probs=107.3

Q ss_pred             eeeeCCCCeEEeeec----------CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE--eCCCcE
Q 009614          241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG--GEDGTV  308 (531)
Q Consensus       241 ~~fspdg~~lasgs~----------dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I  308 (531)
                      +.|+|+|.+|++-..          -+...+|.++........+    .+ .+.++|.+++|+|+|+.||..  ..++.|
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i----~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI----EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee----ec-cCCCceEEEEECcCCCEEEEEEccCCccc
Confidence            679999988865322          2345556554332222111    11 234579999999999987654  357799


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .+||+. ++.                                                              +..+  +.
T Consensus        86 ~lyd~~-~~~--------------------------------------------------------------i~~~--~~  100 (194)
T PF08662_consen   86 TLYDVK-GKK--------------------------------------------------------------IFSF--GT  100 (194)
T ss_pred             EEEcCc-ccE--------------------------------------------------------------eEee--cC
Confidence            999984 211                                                              2222  24


Q ss_pred             CCeeEEEEcCCC-eEEEEeC---CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC------CCeEEEEeC
Q 009614          389 SEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEV  458 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~---Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~------Dg~I~Iwd~  458 (531)
                      ..++.|.|+|+| +|++++.   .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++..      |..++||+.
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe
Confidence            567889999999 7777764   4679999999999998888765 78999999 9999999864      788999998


Q ss_pred             CCCeE
Q 009614          459 RRCQV  463 (531)
Q Consensus       459 ~~~~~  463 (531)
                      ....+
T Consensus       179 ~G~~l  183 (194)
T PF08662_consen  179 QGRLL  183 (194)
T ss_pred             cCeEe
Confidence            64433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.44  E-value=5.2e-12  Score=116.79  Aligned_cols=196  Identities=13%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCcc
Q 009614          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ..|+. +-+++.+.+-|.+..|||+..+.    .......+.+|...|..|+|...+. .+|+.|.||.||++|++..+.
T Consensus       156 FDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  156 FDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccCCcceeEeecccCeEEEEEEeecc----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            33433 44678899999999999998752    1222235789999999999998554 789999999999999987664


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      ...+.....          ....+.-+.+..........+ .-....+++.+.+.   ...++..+.+|.+.|+.|+|.|
T Consensus       232 STIIYE~p~----------~~~pLlRLswnkqDpnymATf-~~dS~~V~iLDiR~---P~tpva~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  232 STIIYEDPS----------PSTPLLRLSWNKQDPNYMATF-AMDSNKVVILDIRV---PCTPVARLRNHQASVNGIAWAP  297 (364)
T ss_pred             ceEEecCCC----------CCCcceeeccCcCCchHHhhh-hcCCceEEEEEecC---CCcceehhhcCcccccceEecC
Confidence            333322221          112222222222211111111 11223455555443   3567899999999999999999


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCe------EEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          399 NG--FLLSSSADKTVRLWQVGIDR------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       399 ~~--~l~s~s~Dg~V~lwdl~~~~------~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      ..  .|++++.|..+.+||+...-      ++..+...+.|+.|+|+|..+.+|+.+.. .++.|
T Consensus       298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             CCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            87  99999999999999997532      33344577889999999988889888764 44444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.7e-11  Score=125.82  Aligned_cols=201  Identities=12%  Similarity=0.101  Sum_probs=136.6

Q ss_pred             ceeeeccccceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCC
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDG  306 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg  306 (531)
                      ++.+...+.+.+|+|||+.|+..+.   +..|.+|++..+..        +.+..+.+.+...+|+|||+.|+ +.+.++
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            3444456667899999999887653   46899999875432        12445667788899999999775 555566


Q ss_pred             c--EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          307 T--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       307 ~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      .  |.+||+.++..                                                               ..+
T Consensus       269 ~~~Iy~~d~~~~~~---------------------------------------------------------------~~L  285 (435)
T PRK05137        269 NTDIYTMDLRSGTT---------------------------------------------------------------TRL  285 (435)
T ss_pred             CceEEEEECCCCce---------------------------------------------------------------EEc
Confidence            5  55556654431                                                               112


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEe
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWE  457 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~-Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd  457 (531)
                      ..+.+......|+|+| .|+..+. ++  .|.+||+.++.......+...+....|+| ++++|+..+.+   ..|.+||
T Consensus       286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d  364 (435)
T PRK05137        286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMK  364 (435)
T ss_pred             cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEE
Confidence            2233445568999999 6666553 33  68888988776655544556677889999 89988876643   3688899


Q ss_pred             CCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC------CcEEEEeCCCCeE
Q 009614          458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT------GNCRFYDIKDNQL  504 (531)
Q Consensus       458 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d------g~I~iwd~~~~~l  504 (531)
                      +.++....+.. ...+..+.|+|||+.|+..+.+      ..++++|+.++..
T Consensus       365 ~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        365 PDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            87655443322 2346778999999998876553      2578888876554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.4e-11  Score=108.81  Aligned_cols=197  Identities=14%  Similarity=0.204  Sum_probs=144.2

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      -.++++.+.|..+-++.++.|+.++-||+.++.       ...+++||++.|.++.--.....++||++||++||||.++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCE-------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            356778899888888877799999999998554       3457999999999999855555799999999999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC-CCCeeEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l  394 (531)
                      ++.+..+......                                                     ..+..| ...|.++
T Consensus       188 ~k~v~~ie~yk~~-----------------------------------------------------~~lRp~~g~wigal  214 (325)
T KOG0649|consen  188 QKHVSMIEPYKNP-----------------------------------------------------NLLRPDWGKWIGAL  214 (325)
T ss_pred             cceeEEeccccCh-----------------------------------------------------hhcCcccCceeEEE
Confidence            9876655332111                                                     112223 3467788


Q ss_pred             EEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceE
Q 009614          395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS  474 (531)
Q Consensus       395 ~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~  474 (531)
                      +.+.+ .|++|+ ...+.+|+++..++..+|..+.+|.-+.|.   .+.+++++....|.-|.+..--...........+
T Consensus       215 a~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~  289 (325)
T KOG0649|consen  215 AVNED-WLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACY  289 (325)
T ss_pred             eccCc-eEEecC-CCceeEEeccCCCceEEEecccceeEeeee---cceEEEeccccceeeeeeccEEEEeccCCcccee
Confidence            76654 666655 467999999999999999999999999994   4678888888899999887533333444444556


Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEE
Q 009614          475 AVCYCPDG-KGGIVGTMTGNCRFY  497 (531)
Q Consensus       475 ~v~~spdg-~~l~sgs~dg~I~iw  497 (531)
                      +..|+-.. +.|-.++...++.|+
T Consensus       290 s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  290 SASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eecccCCceEEEEecccceeeeee
Confidence            66665443 445556666667666

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=6.3e-13  Score=129.83  Aligned_cols=253  Identities=14%  Similarity=0.158  Sum_probs=164.2

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~  319 (531)
                      .+.++.+|.+++.|+..|.|..+|+.+.....       ++. -...|.++.|-.+.+++|++ ....+.|||- .|..+
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-------Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtEl  203 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-------EIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTEL  203 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeee-------eee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEE
Confidence            36788899999999999999999988654321       121 13457777777777666665 3456777774 33333


Q ss_pred             cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                      ..+..+. .+..+.|.+.+.-                +++.+..+.+...|..+    ++.+..+....+.+..|+-+|-
T Consensus       204 HClk~~~-~v~rLeFLPyHfL----------------L~~~~~~G~L~Y~DVS~----GklVa~~~t~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  204 HCLKRHI-RVARLEFLPYHFL----------------LVAASEAGFLKYQDVST----GKLVASIRTGAGRTDVMKQNPY  262 (545)
T ss_pred             eehhhcC-chhhhcccchhhe----------------eeecccCCceEEEeech----hhhhHHHHccCCccchhhcCCc
Confidence            3332211 1223333333321                12222223333333322    2335555666788888999997


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEE-eecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEE
Q 009614          400 G-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC  477 (531)
Q Consensus       400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~  477 (531)
                      + .+-+|...|+|.+|......++.. +.|.++|.+|+++| +|+|+++.+.|..|+|||+++...+.......+...++
T Consensus       263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls  341 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLS  341 (545)
T ss_pred             cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCccccc
Confidence            7 899999999999999988877654 46999999999999 99999999999999999999877554333356677888


Q ss_pred             EccCCCEEEEEeCCCcEEEEe-CCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          478 YCPDGKGGIVGTMTGNCRFYD-IKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       478 ~spdg~~l~sgs~dg~I~iwd-~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +|..|  +++.+....|.||. .-.+..-.  . .+.-..+. +..|.++.|+|
T Consensus       342 ~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~--~-~pYm~H~~-~~~V~~l~FcP  389 (545)
T KOG1272|consen  342 LSQKG--LLALSYGDHVQIWKDALKGSGHG--E-TPYMNHRC-GGPVEDLRFCP  389 (545)
T ss_pred             ccccc--ceeeecCCeeeeehhhhcCCCCC--C-cchhhhcc-Ccccccceecc
Confidence            88766  44555566799994 33322100  0 01111122 34899999998

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=1.6e-10  Score=108.52  Aligned_cols=178  Identities=13%  Similarity=0.204  Sum_probs=121.1

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc-cCccccceecCCCCCeeEEE
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQDTDPSCLYF  334 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~  334 (531)
                      ...|.|||-.+.. ...      ++ ....+|.+|.+.++  .|++. ..+.|.||... +.+.+..+.....+.....+
T Consensus        74 pNkviIWDD~k~~-~i~------el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~  142 (346)
T KOG2111|consen   74 PNKVIIWDDLKER-CII------EL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL  142 (346)
T ss_pred             CceEEEEecccCc-EEE------EE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee
Confidence            3679999933222 111      12 24678999999866  45555 35689999987 44555555544433333333


Q ss_pred             eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCc-EE
Q 009614          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VR  412 (531)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~-V~  412 (531)
                      .+.....+++.             .+-.-+.+.+.+......  .+...+..|...|.|++.+.+| ++||+|..|+ ||
T Consensus       143 ~~~~~k~~Laf-------------Pg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  143 CPTSNKSLLAF-------------PGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             cCCCCceEEEc-------------CCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence            33322222221             111223333333222111  1346678999999999999999 9999999998 89


Q ss_pred             EEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          413 LWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       413 lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      |||..+|..+..++   ....|.||+|+| +..+|+++|..|+|+||.++.
T Consensus       208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  208 IFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence            99999999999996   567899999999 999999999999999999875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.41  E-value=2.7e-12  Score=127.31  Aligned_cols=223  Identities=12%  Similarity=0.197  Sum_probs=144.8

Q ss_pred             ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (531)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (531)
                      .|..-|.|+.|+.+...+.+++ |..+.+|.-.+......+..+...+....+.       ......++. ..-..+..+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~-------~~rs~~~g~-~~d~~~i~s   82 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHL-------GGRSSGGGK-GSDTLLICS   82 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccc-------cccccCCCC-CcceEEEEc
Confidence            3666778999998776665554 5555555443433333333333222111110       000011111 111123334


Q ss_pred             CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeC
Q 009614          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV  439 (531)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~  439 (531)
                      .|+.+.+....     .+.-.....|.+.|.+-.|+|+| -|++++.||.|++|.- +|-.-.++ ....+|.|++|.|.
T Consensus        83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence            45555444322     22344567899999999999999 9999999999999985 44333333 36678999999994


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          440 DDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                      ..+.+++.+  +.+.|=.+.. .+++.|..|.+.|.++.|+|...++++|+.|-..+|||.....+..         ...
T Consensus       157 S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~---------S~~  225 (737)
T KOG1524|consen  157 SNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT---------SAA  225 (737)
T ss_pred             CCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc---------CCh
Confidence            445555443  4666666654 4677999999999999999999999999999999999988655432         334


Q ss_pred             CCceeeeEEEee
Q 009614          519 PGKRITGFQVVK  530 (531)
Q Consensus       519 ~~~~It~l~f~p  530 (531)
                      +.-+||+++|+|
T Consensus       226 ~ey~ITSva~np  237 (737)
T KOG1524|consen  226 EEYAITSVAFNP  237 (737)
T ss_pred             hccceeeeeecc
Confidence            557899999987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1.5e-11  Score=116.94  Aligned_cols=199  Identities=14%  Similarity=0.299  Sum_probs=140.8

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCcc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ++|++.=..+|++..|-.|++|+-....  ..      .++ .-+..|+||+|-|. +..|+.|+..| |.||.......
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ksst~--pt------~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSSTC--PT------KLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCCCC--Cc------eecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence            6788866677889999999999876411  11      121 23467999999994 45677777655 89998643211


Q ss_pred             ccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          319 LDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       319 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                      ... +..          ..                        +.               ...+....+| ..|++|.|.
T Consensus       175 ~~r~~~~----------~s------------------------~~---------------~~qvl~~pgh-~pVtsmqwn  204 (445)
T KOG2139|consen  175 ANRNIRM----------MS------------------------TH---------------HLQVLQDPGH-NPVTSMQWN  204 (445)
T ss_pred             ccccccc----------cc------------------------cc---------------chhheeCCCC-ceeeEEEEc
Confidence            100 000          00                        00               0012333455 689999999


Q ss_pred             CCC-eEEEEe-CCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC-CCCeEEEecCCCCce
Q 009614          398 KNG-FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIV  473 (531)
Q Consensus       398 p~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~-~~~~~~~~~~~~~~v  473 (531)
                      ++| .|++++ .|..|+|||..++.++... ...+.++-+.|+| |+.+|.++.-|+..++|+. ++.....+.-..+.|
T Consensus       205 ~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrv  283 (445)
T KOG2139|consen  205 EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRV  283 (445)
T ss_pred             CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCce
Confidence            999 777776 5678999999999887776 3667788999999 9999999999999999954 445555666667799


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          474 SAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ...+|+|+|+.|+.++. |.-++|.+.
T Consensus       284 qtacWspcGsfLLf~~s-gsp~lysl~  309 (445)
T KOG2139|consen  284 QTACWSPCGSFLLFACS-GSPRLYSLT  309 (445)
T ss_pred             eeeeecCCCCEEEEEEc-CCceEEEEe
Confidence            99999999998876663 445566553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.40  E-value=4.3e-11  Score=121.56  Aligned_cols=209  Identities=17%  Similarity=0.227  Sum_probs=138.1

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc-cccccccce---------------------------EE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYTGQ---------------------------EF  280 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~-~~~~~~~~~---------------------------~l  280 (531)
                      .++.+|++.|.+++++.||+.+|+|+.|..|.||.-+-... ..+.....|                           ..
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V  126 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV  126 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence            45778999999999999999999999999999997653211 011000000                           11


Q ss_pred             cccC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceec---CCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          281 LAHE--GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       281 ~~H~--~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      ..|.  ..|.+.+|..||++|+.|-.||+|.|-+- +++....+..   ...++..+.+.++......            
T Consensus       127 ~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~------------  193 (1081)
T KOG1538|consen  127 SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN------------  193 (1081)
T ss_pred             HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc------------
Confidence            2232  35677889999999999999999998864 4444334433   3344555666555431100            


Q ss_pred             cccccCCCceEEEeCCc--cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCce
Q 009614          356 KSLRKSSDLTCVVLPPK--VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV  431 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V  431 (531)
                            .-..++-|...  .+.+.++.+..-..-.-...|+.+.++| +++.|+.|+.+++|. +.|-.+.+.. ....|
T Consensus       194 ------di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WI  266 (1081)
T KOG1538|consen  194 ------DILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWI  266 (1081)
T ss_pred             ------ceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeE
Confidence                  00011112211  1112222222222233456799999999 999999999999996 5666666665 67899


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ++++..| ++++++.|+.||+|.-|++
T Consensus       267 WtV~~~P-NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  267 WTVQAKP-NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEEEEcc-CCceEEEEEccCeeehhhh
Confidence            9999999 9999999999999998876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.40  E-value=1.8e-10  Score=116.21  Aligned_cols=228  Identities=13%  Similarity=0.160  Sum_probs=135.8

Q ss_pred             EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEccc-Ccc--ccceecCC
Q 009614          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIE-HER--LDGFDVQD  326 (531)
Q Consensus       251 asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~-~~~--~~~~~~~~  326 (531)
                      ++...++.|.+|++....    .+...+.+. +.+....+.++|++++|++++ .++.|.+|++.. +..  ...... .
T Consensus         6 ~~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~   79 (330)
T PRK11028          6 IASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P   79 (330)
T ss_pred             EEcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C
Confidence            445678999999996321    112223333 345677899999999987764 588999999963 321  111111 1


Q ss_pred             CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EE
Q 009614          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS  404 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s  404 (531)
                      ..+..+.+.++... ++..              ...++.+.+|+........+.+..+. +......++++|++ ++ ++
T Consensus        80 ~~p~~i~~~~~g~~-l~v~--------------~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~  143 (330)
T PRK11028         80 GSPTHISTDHQGRF-LFSA--------------SYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP  143 (330)
T ss_pred             CCceEEEECCCCCE-EEEE--------------EcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence            12333333333221 1111              11234555554432111111222222 22346778899998 55 55


Q ss_pred             EeCCCcEEEEECCCCeEEE-------EeecCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCC--CeE--EE-ecC---
Q 009614          405 SSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQV--VD-YTD---  468 (531)
Q Consensus       405 ~s~Dg~V~lwdl~~~~~l~-------~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~--~~~--~~-~~~---  468 (531)
                      ...++.|.+||+.+...+.       ..........+.|+| ++++++++.. ++.|.+|++..  ++.  +. ...   
T Consensus       144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~  222 (330)
T PRK11028        144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA  222 (330)
T ss_pred             eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence            5677999999998643221       112234467899999 8998887765 89999999973  332  21 111   


Q ss_pred             ---CCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 009614          469 ---IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKD  501 (531)
Q Consensus       469 ---~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~  501 (531)
                         .......+.++|+|++|+++.. ++.|.+|++..
T Consensus       223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence               1122346889999999998864 78899999854

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.39  E-value=7e-13  Score=137.50  Aligned_cols=214  Identities=19%  Similarity=0.316  Sum_probs=157.4

Q ss_pred             ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccc
Q 009614          273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (531)
Q Consensus       273 ~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (531)
                      .+.....+.+|..+|+|+.|...|.++++|++|..|+||...++.++.....+...+..++...+.              
T Consensus       179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n--------------  244 (1113)
T KOG0644|consen  179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN--------------  244 (1113)
T ss_pred             HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh--------------
Confidence            344445688999999999999999999999999999999999999999998888877665543322              


Q ss_pred             ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEE-----eec
Q 009614          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSH  427 (531)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~-----~~h  427 (531)
                        .....++.|..+.+|-...    +.|+..+.+|++.|++|+|+|-   .+.+.||++++||.+-...+..     +..
T Consensus       245 --~~iaaaS~D~vIrvWrl~~----~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~  315 (1113)
T KOG0644|consen  245 --TMIAAASNDKVIRVWRLPD----GAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTE  315 (1113)
T ss_pred             --hhhhhcccCceEEEEecCC----CchHHHHhccccceeeeccCcc---ccCCCCCceEeccccccccccCCCCCCccc
Confidence              2334567777788887665    5678889999999999999996   4889999999999871111100     000


Q ss_pred             CCc--------------------------eEEEEEee----------CCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC
Q 009614          428 NNY--------------------------VTSVAFNP----------VDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR  470 (531)
Q Consensus       428 ~~~--------------------------V~sv~fsp----------~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~  470 (531)
                      ...                          ..+++|..          +...+.+++-.+-.+.+|++.+++.++ ..+|.
T Consensus       316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             ccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence            111                          11122221          111234444455667888888887774 78899


Q ss_pred             CceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          471 EIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       471 ~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ..++.+.++|-+ ....+++.||..-|||+-.|-.++.+.
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence            999999999955 555789999999999999888877665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=8.5e-11  Score=122.59  Aligned_cols=200  Identities=20%  Similarity=0.205  Sum_probs=130.0

Q ss_pred             eeccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCCcEE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVR  309 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~  309 (531)
                      +...+.+.+|+|||+.|+..+..   ..|.+||+..+...        .+....+.+....|+|||+.|+ +.+.+|...
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~  265 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ  265 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence            34456678999999999876542   46999998755422        1223345567899999999886 567788877


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      ||.+.....                                                             ....+..+.+
T Consensus       266 Iy~~d~~~~-------------------------------------------------------------~~~~lt~~~~  284 (427)
T PRK02889        266 IYTVNADGS-------------------------------------------------------------GLRRLTQSSG  284 (427)
T ss_pred             EEEEECCCC-------------------------------------------------------------CcEECCCCCC
Confidence            776532100                                                             0111222334


Q ss_pred             CeeEEEEcCCC-eEEEEe-CCCcEEEEEC--CCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEeCCCCe
Q 009614          390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQ  462 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl--~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd~~~~~  462 (531)
                      ......|+|+| .|+..+ .++...||.+  .++...............+|+| ++++|+..+.++   .|.+||+.+++
T Consensus       285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCC
Confidence            45567899999 666554 3456666654  4554433333334455689999 999998777654   69999999887


Q ss_pred             EEEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEE
Q 009614          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLY  505 (531)
Q Consensus       463 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~l~  505 (531)
                      ...+... .......|+|||+.|+.++.++   .+.+.++. ++..
T Consensus       364 ~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~  407 (427)
T PRK02889        364 VTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIK  407 (427)
T ss_pred             eEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCce
Confidence            6654433 3446789999999998877654   35556663 4433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.38  E-value=1.7e-11  Score=121.96  Aligned_cols=134  Identities=19%  Similarity=0.359  Sum_probs=107.0

Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC--------------CeEEE--------------Eee-cCCceEEEEE
Q 009614          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--------------DRCLR--------------VFS-HNNYVTSVAF  436 (531)
Q Consensus       388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~--------------~~~l~--------------~~~-h~~~V~sv~f  436 (531)
                      ...|+++.|-|.+  .++.+-.+|.+.+||..-              +....              .+. ..+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            4789999999976  888889999999997631              11111              111 2457888999


Q ss_pred             eeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614          437 NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK  515 (531)
Q Consensus       437 sp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~  515 (531)
                      +| |+++||+.+.||.+||||..+.+++. ....-+...++||+|||+||++|+.|..|.||.+..++++..-+    | 
T Consensus       299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq----G-  372 (636)
T KOG2394|consen  299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ----G-  372 (636)
T ss_pred             cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc----c-
Confidence            99 99999999999999999999988774 45556789999999999999999999999999999999987543    2 


Q ss_pred             ccCCCceeeeEEEee
Q 009614          516 KKLPGKRITGFQVVK  530 (531)
Q Consensus       516 kk~~~~~It~l~f~p  530 (531)
                         |..=|..++|-|
T Consensus       373 ---HkSWVs~VaFDp  384 (636)
T KOG2394|consen  373 ---HKSWVSVVAFDP  384 (636)
T ss_pred             ---cccceeeEeecc
Confidence               224567777754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=8.5e-11  Score=110.29  Aligned_cols=231  Identities=15%  Similarity=0.237  Sum_probs=141.5

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC--CEEEEEEccCCCEEEE-EeCC------CcEEE
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG--SILTMKFSLDGQYLAS-GGED------GTVRV  310 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~--~I~~l~fspdg~~Las-gs~D------g~I~i  310 (531)
                      +++|+.|...+++|...| .+||+.+.-+....       .+-+.+  .+.-|-|-  .++||- ||.+      ..|.|
T Consensus        10 svs~NQD~ScFava~~~G-friyn~~P~ke~~~-------r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-------RQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             EEEEccCCceEEEEecCc-eEEEecCchhhhhh-------hccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEE
Confidence            379999999999998777 89999985332211       111222  23333332  344443 3333      46999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec--CC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HS  388 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~  388 (531)
                      ||=....++.++.... ++..+.+..+.  .++                 --...+++|.-..   ..+.++.+..  ..
T Consensus        80 WDD~k~~~i~el~f~~-~I~~V~l~r~r--iVv-----------------vl~~~I~VytF~~---n~k~l~~~et~~NP  136 (346)
T KOG2111|consen   80 WDDLKERCIIELSFNS-EIKAVKLRRDR--IVV-----------------VLENKIYVYTFPD---NPKLLHVIETRSNP  136 (346)
T ss_pred             EecccCcEEEEEEecc-ceeeEEEcCCe--EEE-----------------EecCeEEEEEcCC---ChhheeeeecccCC
Confidence            9955555444443221 22222222111  000                 0111222222110   0112232222  12


Q ss_pred             CCeeEEEEcCCC-eEEE-EeCCCcEEEEECCCCeE---EEEeecCCceEEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCe
Q 009614          389 SEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQ  462 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s-~s~Dg~V~lwdl~~~~~---l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~  462 (531)
                      ..+.+++-..+. +|+. |-.-|.|.|-|+...+.   ...-.|...|.||+.+- +|..+|++|..|+ |||||..+++
T Consensus       137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCc
Confidence            333344333233 4444 44568999999986655   44556999999999998 9999999999997 8999999998


Q ss_pred             EEE-e--cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          463 VVD-Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       463 ~~~-~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      .+. +  -.....|++++|+|+..+|++++..|+++||.++....
T Consensus       216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence            874 2  23456799999999999999999999999999987543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.37  E-value=2.2e-11  Score=115.09  Aligned_cols=246  Identities=18%  Similarity=0.342  Sum_probs=158.4

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC------------CCEEEEEEccCCC--EEE
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA  300 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~La  300 (531)
                      .+-+.++.|...|.+||+|.++|+|.++.-......  ......+++.|.            ..|..+.|.++++  .++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            355667999999999999999999999977654431  111112344444            4688999998655  677


Q ss_pred             EEeCCCcEEEEEcccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          301 SGGEDGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      ..+.|.+|++|.+........ .......         ....+..+         ...+.+..+..+.          ..
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~---------~~~~~~~l---------r~p~~~~~~~~ve----------a~  154 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG---------PPGTITSL---------RLPVEGRHDLEVE----------AS  154 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccC---------CCCcccee---------eceeeccccceee----------ee
Confidence            778999999999876543221 1100000         00000000         0000011111111          12


Q ss_pred             ceeEe-ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCC-CeEEEEee--------cCCceEEEEEeeCCCCEEEEEeC
Q 009614          380 PLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       380 ~~~~~-~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~-~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      |.+.+ .+|+..|++|.++.++..+.+..|=.|.+|++.- .++.....        -..-|++..|+|...+.|+-.+.
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS  234 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS  234 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence            22222 4588999999999999444456688899999873 33332222        23468999999988999999999


Q ss_pred             CCeEEEEeCCCCeEE-------E----------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeEEEEeeee
Q 009614          450 DGKVRIWEVRRCQVV-------D----------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI-KDNQLYQQNQIC  511 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~-------~----------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~-~~~~l~~~~~~~  511 (531)
                      .|+|++-|++...+-       .          +...-..|..+.|+++|+|+++-.. -+|++||+ -..+.+..++++
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            999999999953211       0          1122346889999999999998765 57999999 456677777654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.36  E-value=4e-12  Score=116.11  Aligned_cols=151  Identities=19%  Similarity=0.288  Sum_probs=116.9

Q ss_pred             eEEeeecCCeEEEEeCCCCccccc---ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      ++++|..+|.|.+||+..+.+.+.   ..........|..+|.++.|.+.-..=++|+.+..+..|++........+   
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~---  243 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI---  243 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence            567899999999999997633221   11122235679999999999886555678888888999987533110000   


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEE
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s  404 (531)
                                                                             -....-..-.|..+.+.|++ .+++
T Consensus       244 -------------------------------------------------------~~e~~lknpGv~gvrIRpD~KIlAT  268 (323)
T KOG0322|consen  244 -------------------------------------------------------RKEITLKNPGVSGVRIRPDGKILAT  268 (323)
T ss_pred             -------------------------------------------------------cceEEecCCCccceEEccCCcEEee
Confidence                                                                   01111123467888899999 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       405 ~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ++.|+.||+|..++.+++..+. |...|++++|+| +.+++|+++.|+.|.+|++
T Consensus       269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999999997 999999999999 8999999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=1.3e-10  Score=122.14  Aligned_cols=215  Identities=19%  Similarity=0.317  Sum_probs=163.9

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      ..++.+.+.|.+.+... +-.+.+|...+..+...   ....-..|.-.+++.+++|+++++|+|..||.|.+|.=-...
T Consensus       163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~---~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~  238 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTS---SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS  238 (792)
T ss_pred             CccEEEcCCceEEEEEE-eeeEEEEEecccceeec---cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc
Confidence            45678888888776664 45688888876542211   111234577789999999999999999999999999732110


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                              ..                                                  ......+.=|...|++++|+
T Consensus       239 --------~~--------------------------------------------------~~t~t~lHWH~~~V~~L~fS  260 (792)
T KOG1963|consen  239 --------DD--------------------------------------------------SETCTLLHWHHDEVNSLSFS  260 (792)
T ss_pred             --------cc--------------------------------------------------cccceEEEecccccceeEEe
Confidence                    00                                                  00123345588899999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE----ec-----
Q 009614          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD----YT-----  467 (531)
Q Consensus       398 p~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~----~~-----  467 (531)
                      ++| +|++|+..+.+.+|.+.+++....-+-.++|..+.++| |+.+.+....|..|.+....+.....    +.     
T Consensus       261 ~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  261 SDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             cCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence            999 99999999999999999998444445889999999999 99999999999999999886643321    11     


Q ss_pred             ---CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614          468 ---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK  515 (531)
Q Consensus       468 ---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~  515 (531)
                         ....-.+.+++.|--+.++-.+..|.|.+||+.+.+.+.+++++....
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~  390 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY  390 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence               123456889999977788999999999999999999998888776543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.8e-11  Score=123.95  Aligned_cols=174  Identities=17%  Similarity=0.129  Sum_probs=121.2

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeE
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL  332 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (531)
                      +..|.+||......        +.+..|...+...+|+|||+.|+.++.+   ..|++||+.+++...            
T Consensus       183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------  242 (429)
T PRK01742        183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------  242 (429)
T ss_pred             eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence            57899999874331        3466788899999999999999987654   369999987654210            


Q ss_pred             EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE-eCCCc
Q 009614          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT  410 (531)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~-s~Dg~  410 (531)
                                                                      +..+.+|   ...++|+|+| .|+.+ +.++.
T Consensus       243 ------------------------------------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        243 ------------------------------------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             ------------------------------------------------EecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence                                                            1112223   2357999999 66665 46777


Q ss_pred             EEEE--ECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCC--CeEEEecCCCCceEEEEEccCCCEE
Q 009614          411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       411 V~lw--dl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                      +.||  |+.++.......+...+...+|+| |++.|+..+ .+|..+||++..  +..... .+..  ....|+|||++|
T Consensus       272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL  347 (429)
T ss_pred             EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence            5555  676776655555777788999999 888776555 578888887643  333222 3333  457899999999


Q ss_pred             EEEeCCCcEEEEeCCCCeEE
Q 009614          486 IVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       486 ~sgs~dg~I~iwd~~~~~l~  505 (531)
                      +.++.++ +.+||+.+++..
T Consensus       348 a~~~~~~-i~~~Dl~~g~~~  366 (429)
T PRK01742        348 VMINGDN-VVKQDLTSGSTE  366 (429)
T ss_pred             EEEcCCC-EEEEECCCCCeE
Confidence            8888765 566999888654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=3.2e-10  Score=118.78  Aligned_cols=176  Identities=12%  Similarity=0.064  Sum_probs=126.6

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCeeE
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (531)
                      ...|.++|.....        .+.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++..             
T Consensus       181 ~~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-------------  239 (435)
T PRK05137        181 IKRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-------------  239 (435)
T ss_pred             ceEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-------------
Confidence            3478888875322        1245678889999999999999888764   467999998765421             


Q ss_pred             EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCCc
Q 009614          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKT  410 (531)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~  410 (531)
                                                                        .+..+.+.+...+|+|+| .| ++.+.++.
T Consensus       240 --------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        240 --------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             --------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence                                                              112234456678999999 54 45566655


Q ss_pred             --EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-C--CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614          411 --VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D--GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       411 --V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-D--g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                        |.+||+.++.......+.......+|+| |++.|+..+. +  ..|++||+.+++...+......+....|+|||++|
T Consensus       270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             ceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence              7777998887766555666678899999 8988887664 3  36888898887766655555566778999999999


Q ss_pred             EEEeCC---CcEEEEeCCCCe
Q 009614          486 IVGTMT---GNCRFYDIKDNQ  503 (531)
Q Consensus       486 ~sgs~d---g~I~iwd~~~~~  503 (531)
                      +....+   ..|.+||+.++.
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCc
Confidence            887654   358888886554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.32  E-value=3.7e-12  Score=124.54  Aligned_cols=199  Identities=15%  Similarity=0.207  Sum_probs=156.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCce
Q 009614          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (531)
                      .-+.+.++.+|++|+.|+.-|.|-.+|+.+++...++..... +..+.|..+.                 ..+.......
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et-v~Dv~~LHne-----------------q~~AVAQK~y  192 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET-VRDVTFLHNE-----------------QFFAVAQKKY  192 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh-hhhhhhhcch-----------------HHHHhhhhce
Confidence            456789999999999999999999999999988777654332 1111121111                 1122333444


Q ss_pred             EEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCE
Q 009614          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~  443 (531)
                      +++|+...     ..++-++.| ..|..|.|.|.. +|++++..|.++.-|+.+|+.+..+. ..+.+..++-+| -...
T Consensus       193 ~yvYD~~G-----tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaV  265 (545)
T KOG1272|consen  193 VYVYDNNG-----TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAV  265 (545)
T ss_pred             EEEecCCC-----cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccce
Confidence            55665543     234444444 468899999998 88999999999999999999998886 667888999999 7789


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +-+|...|+|.+|.....+++ ++.-|.++|.+|++.++|+|+||.+.|..|+|||++.-..+..+.
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            999999999999999988776 688899999999999999999999999999999999877555544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=8.2e-12  Score=122.88  Aligned_cols=267  Identities=18%  Similarity=0.267  Sum_probs=172.3

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCc
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGT  307 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~  307 (531)
                      .+..|.+.++.+.|...|..+++|+.|.+|.+||+......+.      -..||...|...+|-|  +.+-|++++.||.
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceeccccCc
Confidence            4566778888999999999999999999999999987665443      2457988998889988  4567999999999


Q ss_pred             EEEEEcccCccc---cceecCCCCCeeEEEeecCCcceeeeecccccc--------ccccccccCCCce--EEEeC----
Q 009614          308 VRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI--------DKTKSLRKSSDLT--CVVLP----  370 (531)
Q Consensus       308 I~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~----  370 (531)
                      |++=.+......   ..+..+...+..++..+.....+....-+....        ......+...+..  +.++.    
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            999877543322   233444555555555554443333222111110        0000001111111  11111    


Q ss_pred             C-cc--cccc---------Ccc-ee--Eeec--C-----------CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--C
Q 009614          371 P-KV--FRLL---------EKP-LH--EFQG--H-----------SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--D  419 (531)
Q Consensus       371 ~-~~--~~~~---------~~~-~~--~~~~--h-----------~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~  419 (531)
                      + ..  +...         .++ +.  ...+  +           .-.|++++++.++ -|+++..|-.|+++.-.-  +
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            1 11  0000         000 00  0111  0           1258899999998 777888888888885332  2


Q ss_pred             ----------eEEEE-ee-cC--CceEEEEE-eeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCC
Q 009614          420 ----------RCLRV-FS-HN--NYVTSVAF-NPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK  483 (531)
Q Consensus       420 ----------~~l~~-~~-h~--~~V~sv~f-sp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~  483 (531)
                                ..++. ++ |.  ..|..+-| -| ...|+++|+.-|.|.||+-.+++++. +.+....|+|+.=+|--.
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P  449 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP  449 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc
Confidence                      12222 32 33  34667765 46 78999999999999999999999885 445555899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCe
Q 009614          484 GGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~  503 (531)
                      .||+.+.|..|+||...+.+
T Consensus       450 vLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  450 VLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             hhhccCCccceeeecCCccc
Confidence            99999999999999875444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.5e-10  Score=116.16  Aligned_cols=234  Identities=16%  Similarity=0.144  Sum_probs=153.2

Q ss_pred             cccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccC--CCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       237 ~~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~--~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      ..+.+..+|||+++ |+|...-.|++||+......         +.-|.  ..|.-.-++.|-..++.--.|.+|-+..-
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEcccceee---------eeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            33458899999986 66888999999999854322         33343  23444444555555555566777766542


Q ss_pred             ccCccccceecCC-----CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          314 IEHERLDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       314 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .....-..++...     ..+.|-.+                        .++....++.++...    +..+..+....
T Consensus       124 ~G~hy~~RIP~~GRDm~y~~~scDly------------------------~~gsg~evYRlNLEq----GrfL~P~~~~~  175 (703)
T KOG2321|consen  124 YGRHYRTRIPKFGRDMKYHKPSCDLY------------------------LVGSGSEVYRLNLEQ----GRFLNPFETDS  175 (703)
T ss_pred             cCeeeeeecCcCCccccccCCCccEE------------------------EeecCcceEEEEccc----ccccccccccc
Confidence            1111100111000     01111111                        112222233332222    23355566667


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-------cCC-----ceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-------h~~-----~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      +.++++..++-. +|++|+.+|.|-.||.++...+.++.       |.+     .|+++.|+. ++-.+++|..+|.|.|
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~i  254 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLI  254 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEE
Confidence            899999999966 99999999999999999888777664       333     399999997 7999999999999999


Q ss_pred             EeCCCCeEEEecCCC--CceEEEEEccCC--CEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          456 WEVRRCQVVDYTDIR--EIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       456 wd~~~~~~~~~~~~~--~~v~~v~~spdg--~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ||+++.+++-...|.  -+|..+.|.+.+  +.|++. ....++|||-.+|+....+.
T Consensus       255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  255 YDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             EEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence            999999988666554  578889998753  334333 35679999999999876554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=2.3e-10  Score=119.71  Aligned_cols=177  Identities=19%  Similarity=0.164  Sum_probs=123.4

Q ss_pred             CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeEE
Q 009614          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (531)
Q Consensus       257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (531)
                      .+|.+||......        +.+..|...+...+|+|||+.|+.++.+   ..|.+|++.+++...             
T Consensus       184 ~~l~i~D~~g~~~--------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-------------  242 (433)
T PRK04922        184 YALQVADSDGYNP--------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-------------  242 (433)
T ss_pred             EEEEEECCCCCCc--------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence            4688898753321        2355677789999999999999987743   468889886654210             


Q ss_pred             EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCC--
Q 009614          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADK--  409 (531)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg--  409 (531)
                                                                        +..+.+....+.|+|+| .| ++.+.++  
T Consensus       243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence                                                              11122233467899999 44 4555555  


Q ss_pred             cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CCe--EEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       410 ~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~--I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~  486 (531)
                      .|.+||+.+++......+.......+|+| ++++|+..+. +|.  |+++|+.+++...+.........++|+|||++|+
T Consensus       273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            59999999888665555655667899999 8988887664 444  7777887776654443334455789999999998


Q ss_pred             EEeCCC---cEEEEeCCCCeEE
Q 009614          487 VGTMTG---NCRFYDIKDNQLY  505 (531)
Q Consensus       487 sgs~dg---~I~iwd~~~~~l~  505 (531)
                      ..+.++   .|.+||+.+++..
T Consensus       352 ~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             EEECCCCceeEEEEECCCCCeE
Confidence            876543   5999999887754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=6.9e-10  Score=115.75  Aligned_cols=178  Identities=13%  Similarity=0.053  Sum_probs=122.9

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCeeE
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCL  332 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (531)
                      ...|.++|......        +.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++...            
T Consensus       178 ~~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------  237 (429)
T PRK03629        178 PYELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------  237 (429)
T ss_pred             ceeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------
Confidence            34788888764332        224456778999999999999887542   3568888876654210            


Q ss_pred             EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE-eCCC-
Q 009614          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADK-  409 (531)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~-s~Dg-  409 (531)
                                                                      +..+.+   .+..+.|+|+| .|+.. +.++ 
T Consensus       238 ------------------------------------------------l~~~~~---~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        238 ------------------------------------------------VASFPR---HNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             ------------------------------------------------ccCCCC---CcCCeEECCCCCEEEEEEcCCCC
Confidence                                                            111122   23457899999 55543 4454 


Q ss_pred             -cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614          410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       410 -~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-g--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                       .|.+||+.+++..+...+...+....|+| +++.|+..+.+ +  .|.++|+.+++...+..........+|+|||++|
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence             58899999888766666666788999999 89988777654 3  4555577777665554444556678999999999


Q ss_pred             EEEeCC---CcEEEEeCCCCeEE
Q 009614          486 IVGTMT---GNCRFYDIKDNQLY  505 (531)
Q Consensus       486 ~sgs~d---g~I~iwd~~~~~l~  505 (531)
                      +..+.+   ..|.+||+.+++..
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeE
Confidence            886654   35888999888643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=8.4e-11  Score=125.54  Aligned_cols=199  Identities=17%  Similarity=0.249  Sum_probs=153.0

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (531)
                      ..|....+..+...++.+..+..+.+||...+.....+.........            ....-.......+...++.-+
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~------------~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY------------SSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEE------------eEEEEeccCcEEEEEeccccc
Confidence            34555566667788999999999999999887766555433221111            111111122334456677778


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--EeecCCceEEEEEeeCCC
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDD  441 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~~h~~~V~sv~fsp~d~  441 (531)
                      .+++|.+.   ...++. .+.+|.+.|..+.|+.+| ++++.|+|.++|+|++.+.+.+.  .|.|+..|+.++|+| . 
T Consensus       156 ~iivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n-  229 (967)
T KOG0974|consen  156 EIIVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N-  229 (967)
T ss_pred             cEEEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c-
Confidence            88999887   223333 689999999999999999 99999999999999999988765  567999999999998 4 


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEEEecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                       ++++++.|.+.++|+....+...+..|. ..+..++..++...+++++.||.+++|++...
T Consensus       230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence             9999999999999977766555566654 57899999999999999999999999998753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.28  E-value=9.6e-10  Score=111.65  Aligned_cols=245  Identities=14%  Similarity=0.136  Sum_probs=136.7

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcccC
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEH  316 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~  316 (531)
                      +..+.|+|||+++.+.+.||.|.++|+.+.+.       ..+++... ...++++++||++++++. ..+.+.++|..+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            34478999999999999999999999986552       23344333 467899999999998775 5899999999999


Q ss_pred             ccccceecCCCCC-------eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          317 ERLDGFDVQDTDP-------SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       317 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +.++.+.......       ..+..++.....++.+               ...+.+.+.+....   ............
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l---------------kd~~~I~vVdy~d~---~~~~~~~i~~g~  172 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL---------------KDTGEIWVVDYSDP---KNLKVTTIKVGR  172 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE---------------TTTTEEEEEETTTS---SCEEEEEEE--T
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEE---------------ccCCeEEEEEeccc---cccceeeecccc
Confidence            8888775432211       1122222211111111               11112222221111   001111112233


Q ss_pred             CeeEEEEcCCC-eE-EEEeCCCcEEEEECCCCeEEE--------------------------------------------
Q 009614          390 EVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLR--------------------------------------------  423 (531)
Q Consensus       390 ~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~--------------------------------------------  423 (531)
                      ...+..|.|++ ++ ++...+..|-++|..+++.+.                                            
T Consensus       173 ~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~  252 (369)
T PF02239_consen  173 FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS  252 (369)
T ss_dssp             TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred             cccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc
Confidence            44566666766 33 333445566666665554333                                            


Q ss_pred             -----------EeecCCceEEEEEeeCCCCEEEEE----eCCCeEEEEeCCCCeEEEecC--CCCceEEEEEccCCCEEE
Q 009614          424 -----------VFSHNNYVTSVAFNPVDDNYFISG----SIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       424 -----------~~~h~~~V~sv~fsp~d~~~l~sg----s~Dg~I~Iwd~~~~~~~~~~~--~~~~v~~v~~spdg~~l~  486 (531)
                                 .+...+.-.-+..+| +++++.+.    ...++|.|+|..+.+++....  ....+..+.|++||+.+.
T Consensus       253 v~d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~  331 (369)
T PF02239_consen  253 VHDDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW  331 (369)
T ss_dssp             -STTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred             cchhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence                       222222224466688 88888887    445899999999998775433  223489999999999887


Q ss_pred             EEeCCC--cEEEEeCCCCeEEEEee
Q 009614          487 VGTMTG--NCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       487 sgs~dg--~I~iwd~~~~~l~~~~~  509 (531)
                      ++..++  .|.+||..+.+++..++
T Consensus       332 vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  332 VSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCEEEEEECCCcEEEEEEE
Confidence            766544  59999999999998877

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=7.9e-10  Score=115.26  Aligned_cols=192  Identities=17%  Similarity=0.209  Sum_probs=129.1

Q ss_pred             cccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCC--cEEE
Q 009614          237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TVRV  310 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~I~i  310 (531)
                      .+.+..|+|||++|+.....   ..|++|++.++...        .+..+.+.+.+++|+|||+.|+. .+.++  .|.+
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------EeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            34557899999999876543   47999998764322        23345566778999999997764 44444  4777


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |++.++...                                                               .+..+...
T Consensus       263 ~d~~~~~~~---------------------------------------------------------------~l~~~~~~  279 (417)
T TIGR02800       263 MDLDGKQLT---------------------------------------------------------------RLTNGPGI  279 (417)
T ss_pred             EECCCCCEE---------------------------------------------------------------ECCCCCCC
Confidence            776554311                                                               11112223


Q ss_pred             eeEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEeCCCCeE
Q 009614          391 VLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV  463 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~-Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd~~~~~~  463 (531)
                      .....|+|++ .|+..+. .+  .|.++|+.+++......+...+..+.|+| ++++++.++.++   .|.+||+.++..
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            3456789998 6665543 33  58888888777655544667778899999 899998888776   899999988765


Q ss_pred             EEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 009614          464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKD  501 (531)
Q Consensus       464 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~  501 (531)
                      ..+... .......|+|||++|+..+.++   .+++.+...
T Consensus       359 ~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       359 RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            444332 2335568999999998877754   355666543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.25  E-value=1.3e-09  Score=113.68  Aligned_cols=177  Identities=18%  Similarity=0.146  Sum_probs=125.6

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeE
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL  332 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~  332 (531)
                      ...|.++|.....        .+.+..+...+...+|+|||++|+.+..+   ..|++||+.+++..             
T Consensus       169 ~~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-------------  227 (417)
T TIGR02800       169 RYELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-------------  227 (417)
T ss_pred             cceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-------------
Confidence            3467777765322        12355577789999999999999887654   47889998765421             


Q ss_pred             EEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCC-
Q 009614          333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-  409 (531)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg-  409 (531)
                                                                        .+..+.+.+..++|+|++ .|+ +.+.++ 
T Consensus       228 --------------------------------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       228 --------------------------------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             --------------------------------------------------EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence                                                              011123345568899998 554 444444 


Q ss_pred             -cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-C--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614          410 -TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       410 -~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-g--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                       .|.+||+.++.......+........|+| ++++|+..+.. +  .|+++|+.+++...+..+...+..+.|+|+|++|
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence             58899998887655555555566789999 88888766543 3  6888898888776666566677889999999999


Q ss_pred             EEEeCCC---cEEEEeCCCCeE
Q 009614          486 IVGTMTG---NCRFYDIKDNQL  504 (531)
Q Consensus       486 ~sgs~dg---~I~iwd~~~~~l  504 (531)
                      +.++.++   .|.+||+.++..
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCCe
Confidence            9988776   799999987654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.2e-09  Score=113.97  Aligned_cols=177  Identities=19%  Similarity=0.173  Sum_probs=116.3

Q ss_pred             CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeEE
Q 009614          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (531)
Q Consensus       257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (531)
                      ..|.++|......        +.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...             
T Consensus       176 ~~L~~~D~dG~~~--------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------  234 (427)
T PRK02889        176 YQLQISDADGQNA--------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------  234 (427)
T ss_pred             cEEEEECCCCCCc--------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------
Confidence            4677777643221        2345677889999999999999887643   358999987664210             


Q ss_pred             EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCCcE
Q 009614          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTV  411 (531)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg~V  411 (531)
                                                                        +....+.+...+|+|+| .|+ +.+.++..
T Consensus       235 --------------------------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        235 --------------------------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             --------------------------------------------------eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence                                                              11122344578999999 554 56778876


Q ss_pred             EEEE--CCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CCeEEEEe--CCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614          412 RLWQ--VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWE--VRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       412 ~lwd--l~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd--~~~~~~~~~~~~~~~v~~v~~spdg~~l~  486 (531)
                      .||.  +.++.......+........|+| |++.|+..+. +|...||.  +.++...............+|+|||++|+
T Consensus       265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        265 QIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             eEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            6665  55555433334555667789999 8988776554 45555664  45555443332233345678999999998


Q ss_pred             EEeCCC---cEEEEeCCCCeEE
Q 009614          487 VGTMTG---NCRFYDIKDNQLY  505 (531)
Q Consensus       487 sgs~dg---~I~iwd~~~~~l~  505 (531)
                      ..+.++   .|.+||+.+++..
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeE
Confidence            877654   5999999887654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.24  E-value=4.8e-10  Score=106.27  Aligned_cols=225  Identities=19%  Similarity=0.306  Sum_probs=146.2

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.++.+.++....-|-..-+++.+.|.+++||-..+..+.....     ...-..+++++.+.++...|+.|-.+|++.
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            356788888887777888889999999999999766544332221     233467899999999999999999999998


Q ss_pred             EEEccc----CccccceecCCCCCeeEEEeecCCccee-------eee-cccc-ccccccccccC----CCceEEEeCCc
Q 009614          310 VWKVIE----HERLDGFDVQDTDPSCLYFTINHLSQLI-------PID-VDKE-KIDKTKSLRKS----SDLTCVVLPPK  372 (531)
Q Consensus       310 iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~-~~~~~~~~~~~----~~~~~~~~~~~  372 (531)
                      -+.+..    ...++....+...+..+.+...+...+.       ++. ...+ .+.........    .+..+......
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            886533    2233333334444433333322211111       110 0110 00000000000    01111111111


Q ss_pred             cc--------cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEeecCCceEEEEEeeCCC
Q 009614          373 VF--------RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDD  441 (531)
Q Consensus       373 ~~--------~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~~~h~~~V~sv~fsp~d~  441 (531)
                      .+        ...-.++.++.+|.+.+.+++|.+.. .|.+|..|..|.+||+..+  .....+.|.+.|..++.-+ .-
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t  252 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT  252 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence            11        11235678899999999999999987 9999999999999999754  4445556999999999888 77


Q ss_pred             CEEEEEeCCCeEEEEeCCC
Q 009614          442 NYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ..+++++.||.|-+|++..
T Consensus       253 ~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeeeeccCCCeEEEEeccc
Confidence            8899999999999999864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=2e-09  Score=112.69  Aligned_cols=195  Identities=21%  Similarity=0.212  Sum_probs=123.7

Q ss_pred             eccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCC--cE
Q 009614          235 IDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDG--TV  308 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg--~I  308 (531)
                      ...+....|+|||+.|+..+.+   ..|.+|++..+...        .+....+.+....|+|||+.|+. ...+|  .|
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~--------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE--------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE--------EccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            3445567999999999875533   36888898755432        12222344557899999998874 44455  46


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .+||+.++...                                                               .+..+.
T Consensus       270 y~~d~~~~~~~---------------------------------------------------------------~lt~~~  286 (430)
T PRK00178        270 YVMDLASRQLS---------------------------------------------------------------RVTNHP  286 (430)
T ss_pred             EEEECCCCCeE---------------------------------------------------------------EcccCC
Confidence            66676554311                                                               111222


Q ss_pred             CCeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-C--eEEEEeCCCC
Q 009614          389 SEVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRC  461 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s-~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-g--~I~Iwd~~~~  461 (531)
                      .......|+|+| .|+..+ .++  .|.++++.+++...............|+| ++++|+..+.+ +  .|.+||+.++
T Consensus       287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCC
Confidence            334556899998 555444 333  57778888777544432333445678999 88888776643 3  5889999988


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCC
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDN  502 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~  502 (531)
                      +...+... .......|+|||++|+..+.+   ..+.++++..+
T Consensus       366 ~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        366 SVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             CEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            76544332 223356899999999887654   24677777543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.21  E-value=2.4e-09  Score=100.89  Aligned_cols=255  Identities=13%  Similarity=0.116  Sum_probs=160.8

Q ss_pred             ccccceeeeCCCCeEEe-eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEc
Q 009614          236 DRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKV  313 (531)
Q Consensus       236 ~~~~s~~fspdg~~las-gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~  313 (531)
                      +++.-+.|+.|..++++ ...++.|.+|++.......       .+.....++..++|||||+.| .+..-|-.|.+|.+
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c-------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL  121 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC-------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL  121 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence            44555677777777665 5678899999998544322       366677899999999999755 55566999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccc-------------------cccccCC-CceEEEeCCcc
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-------------------KSLRKSS-DLTCVVLPPKV  373 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~~  373 (531)
                      .+.+... ++.+......+.+.++..-..+....+.......                   ..+.-+. +.-+.+|+.-.
T Consensus       122 ~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L  200 (447)
T KOG4497|consen  122 NTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL  200 (447)
T ss_pred             ccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence            8765432 2222333344444444332222222221111100                   0011122 22344444322


Q ss_pred             ccccCcceeEeecC-CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE------------------------------
Q 009614          374 FRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC------------------------------  421 (531)
Q Consensus       374 ~~~~~~~~~~~~~h-~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~------------------------------  421 (531)
                      -      ...+.-| .-++..++|+|.+ +|+.|+.|+.+|+.+--+-+.                              
T Consensus       201 e------ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~  274 (447)
T KOG4497|consen  201 E------YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH  274 (447)
T ss_pred             h------heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence            1      1111222 3578999999977 999999999999865311100                              


Q ss_pred             ------------------------------EEEee-------cCCceEEEEEeeCCCCEEEEEeC--CCeEEEEeCCCCe
Q 009614          422 ------------------------------LRVFS-------HNNYVTSVAFNPVDDNYFISGSI--DGKVRIWEVRRCQ  462 (531)
Q Consensus       422 ------------------------------l~~~~-------h~~~V~sv~fsp~d~~~l~sgs~--Dg~I~Iwd~~~~~  462 (531)
                                                    ++.++       ....+.-++|++ |..|+++-..  -..+-+||++..+
T Consensus       275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~  353 (447)
T KOG4497|consen  275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLK  353 (447)
T ss_pred             cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhh
Confidence                                          00000       112356689999 8888888543  3579999999988


Q ss_pred             EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       463 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      +........+|.+..|.|....|+.+.....+++|.......+
T Consensus       354 l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  354 LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence            8776667789999999999998998888888999998865443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=2.7e-09  Score=101.78  Aligned_cols=204  Identities=17%  Similarity=0.236  Sum_probs=134.2

Q ss_pred             ccccceeeeCCCC-eEEeeecCCeEEEEeCCCCccccc-----ccccceEE--cccCCCEEEEEEccCCCEEEEEeC-CC
Q 009614          236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS-----SLYTGQEF--LAHEGSILTMKFSLDGQYLASGGE-DG  306 (531)
Q Consensus       236 ~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~-----~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~-Dg  306 (531)
                      ..+.+++|.|.+. .++.|.. +-|.+|..........     .....+.+  .+| .+|+.|.|++||..|++++. |.
T Consensus       141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence            3456789999664 5666766 4589997763221111     11112223  345 68999999999999999985 67


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|.|||+.++..+.-                                                            .  ..
T Consensus       219 si~iWdpdtg~~~pL------------------------------------------------------------~--~~  236 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPL------------------------------------------------------------I--PK  236 (445)
T ss_pred             eEEEEcCCCCCcccc------------------------------------------------------------c--cc
Confidence            899999988764211                                                            1  11


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECC-CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC---
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---  461 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~-~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~---  461 (531)
                      ..+.+.-+.|+|++ +|+++.-|+..++|+.. +..+.+-.-..+.|...+|+| +|.+|+-.+. |.-++|.+.-.   
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~  314 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED  314 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence            34678889999999 99999999999999654 334444334566999999999 7776554432 33445543210   


Q ss_pred             ----------eEE---Ee-----c----CCCCceEEEEEccCCCEEEEEeCCC--------cEEEEeCCCCeEE
Q 009614          462 ----------QVV---DY-----T----DIREIVSAVCYCPDGKGGIVGTMTG--------NCRFYDIKDNQLY  505 (531)
Q Consensus       462 ----------~~~---~~-----~----~~~~~v~~v~~spdg~~l~sgs~dg--------~I~iwd~~~~~l~  505 (531)
                                ...   .+     .    -..+.+.+++|.|.|.+||+.-..+        .|.+||++..-.+
T Consensus       315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v  388 (445)
T KOG2139|consen  315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV  388 (445)
T ss_pred             ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence                      011   11     1    1245788999999999999976543        3677887654433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=4.1e-09  Score=110.49  Aligned_cols=215  Identities=17%  Similarity=0.166  Sum_probs=128.5

Q ss_pred             eeccccceeeeCCCCeEEeeec-C--CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCc--
Q 009614          234 IIDRHGSATLKPGDHELTLGQR-M--RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT--  307 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~-d--g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~--  307 (531)
                      ....+.+..|+|||+.|+..+. +  ..|.+||+..+...        .+....+.....+|+|||+.|+. .+.+|.  
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            3345556899999999987543 2  35888888654321        11112233446899999998865 455665  


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |.+||+.+++.                                                               ..+..+
T Consensus       288 Iy~~dl~tg~~---------------------------------------------------------------~~lt~~  304 (448)
T PRK04792        288 IYVVDIATKAL---------------------------------------------------------------TRITRH  304 (448)
T ss_pred             EEEEECCCCCe---------------------------------------------------------------EECccC
Confidence            55556544321                                                               111223


Q ss_pred             CCCeeEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCC
Q 009614          388 SSEVLDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRR  460 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s-~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~  460 (531)
                      .......+|+|++ .|+..+ .++  .|.++|+.+++..............+|+| ++++|+..+. ++  .|.++|+.+
T Consensus       305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC
Confidence            3345567899998 555444 333  46677887777554432333445678999 8888877654 33  466678888


Q ss_pred             CeEEEecCCCCceEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~--I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ++...+.... ......|+|||+.|+..+.+ |.  ++++++. ++.......        +...+...+|+|
T Consensus       384 g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~--------~~g~~~~p~Wsp  446 (448)
T PRK04792        384 GAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPA--------GQGEVKSPAWSP  446 (448)
T ss_pred             CCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--------CCCCcCCCccCC
Confidence            7765443321 22345899999988776654 33  6777774 444333221        123455666666

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.19  E-value=5.2e-10  Score=105.30  Aligned_cols=193  Identities=18%  Similarity=0.261  Sum_probs=133.3

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcccCccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iWd~~~~~~~  319 (531)
                      .+|+|+|+++|+.+.- ++.|.|..+.+.       .|.+.. -..|.-+.|..|..+++. +..|+.|.+|++...+- 
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~-------~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-   83 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQL-------HQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-   83 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhH-------HHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-
Confidence            5899999999999876 888988874332       111111 356788899988876655 46788999999865442 


Q ss_pred             cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                                                                                   ...+.....++..++|+|+
T Consensus        84 -------------------------------------------------------------~ckIdeg~agls~~~WSPd  102 (447)
T KOG4497|consen   84 -------------------------------------------------------------YCKIDEGQAGLSSISWSPD  102 (447)
T ss_pred             -------------------------------------------------------------EEEeccCCCcceeeeECCC
Confidence                                                                         2233445678899999999


Q ss_pred             C--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC--------------------------
Q 009614          400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--------------------------  451 (531)
Q Consensus       400 ~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg--------------------------  451 (531)
                      |  .|.+...|-.|.+|.+.+..+...--.+..+..++|+| ++++.+.++.-.                          
T Consensus       103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl  181 (447)
T KOG4497|consen  103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL  181 (447)
T ss_pred             cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence            9  67778889999999999887765554455668889999 888877765321                          


Q ss_pred             ----------eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          452 ----------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       452 ----------~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                                .+.+||---.-.+....-.-.+..++|+|.+++|++|+.|+.+||.+--+-+.+
T Consensus       182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                      112222111101111112346788999999999999999999988765444333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=9.1e-10  Score=112.96  Aligned_cols=262  Identities=17%  Similarity=0.199  Sum_probs=176.3

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcc--------cccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      ..+++|+....++|+|+.||.++|..+.+...        ..+++.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi   96 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII   96 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence            34689999999999999999999998765432        2346677899999999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +|-+-.+.-...+...........++++..+.-+++..              .|+.+++-.....++-++.+   ++  .
T Consensus        97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY--------------eDGavIVGsvdGNRIwgKeL---kg--~  157 (1189)
T KOG2041|consen   97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY--------------EDGAVIVGSVDGNRIWGKEL---KG--Q  157 (1189)
T ss_pred             EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE--------------ccCCEEEEeeccceecchhc---ch--h
Confidence            99998887666665444444444444444433333322              23333333332222222222   21  1


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-------eEEEEee-----cCCceEEEEEe--------eCCCCEEEEEe
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGID-------RCLRVFS-----HNNYVTSVAFN--------PVDDNYFISGS  448 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-------~~l~~~~-----h~~~V~sv~fs--------p~d~~~l~sgs  448 (531)
                      -...+.|+++. .++.+-..|.+.+||.+..       .|.....     .+..|..+.|.        | +...|+.+-
T Consensus       158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~lavcy  236 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRLAVCY  236 (1189)
T ss_pred             eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEEEEEE
Confidence            23367899998 7777778899999997643       2211111     33446667764        3 677899999


Q ss_pred             CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCeEEEEeeeeecccccCC
Q 009614          449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---------NCRFYDIKDNQLYQQNQICLQGKKKLP  519 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---------~I~iwd~~~~~l~~~~~~~~~~~kk~~  519 (531)
                      ..|.+.|..-.+..-....+..-.+..+.|+++|..|++++.+.         .|++|..- |+.+.        .-|.+
T Consensus       237 ~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~g--------tlkvp  307 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVG--------TLKVP  307 (1189)
T ss_pred             cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheE--------EEecC
Confidence            99999887554433222333446788999999999999988753         45555543 33333        34567


Q ss_pred             CceeeeEEE
Q 009614          520 GKRITGFQV  528 (531)
Q Consensus       520 ~~~It~l~f  528 (531)
                      ++.||++.|
T Consensus       308 g~~It~lsW  316 (1189)
T KOG2041|consen  308 GSCITGLSW  316 (1189)
T ss_pred             CceeeeeEE
Confidence            789999876

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=7e-10  Score=111.42  Aligned_cols=193  Identities=16%  Similarity=0.253  Sum_probs=145.0

Q ss_pred             eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCC
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD  328 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~  328 (531)
                      +++.| ....|+-.++..+...       +.+.-..+.++++..++...+|++|+.+|.|..||.+.......+......
T Consensus       148 ly~~g-sg~evYRlNLEqGrfL-------~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v  219 (703)
T KOG2321|consen  148 LYLVG-SGSEVYRLNLEQGRFL-------NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV  219 (703)
T ss_pred             EEEee-cCcceEEEEccccccc-------cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence            34444 4455666677654422       224445689999999998889999999999999999877665544322110


Q ss_pred             CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC
Q 009614          329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA  407 (531)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~  407 (531)
                      .                                                   -+........|+++.|+.+| .++.|+.
T Consensus       220 ~---------------------------------------------------s~pg~~~~~svTal~F~d~gL~~aVGts  248 (703)
T KOG2321|consen  220 N---------------------------------------------------SHPGGDAAPSVTALKFRDDGLHVAVGTS  248 (703)
T ss_pred             C---------------------------------------------------CCccccccCcceEEEecCCceeEEeecc
Confidence            0                                                   00011123459999999999 9999999


Q ss_pred             CCcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCE
Q 009614          408 DKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG  484 (531)
Q Consensus       408 Dg~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~  484 (531)
                      +|.|.|||+++.+++..-.|.  -+|..+.|.+.++. .+++ .....++|||-.+++..........+..+|+-|++-+
T Consensus       249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM  327 (703)
T ss_pred             CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCCcCceeeecCCce
Confidence            999999999999998887765  57889999874333 4444 4557899999999999988888888999999999999


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 009614          485 GIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       485 l~sgs~dg~I~iwd~~~  501 (531)
                      +++|-.++.+..|=+..
T Consensus       328 ~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  328 FFTANESSKMHTYYIPS  344 (703)
T ss_pred             EEEecCCCcceeEEccc
Confidence            99999998888776654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.18  E-value=9e-10  Score=119.33  Aligned_cols=190  Identities=17%  Similarity=0.258  Sum_probs=134.7

Q ss_pred             EEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          279 EFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      .+..|...|..++.++. +.+++|||.||+|++|+......-.      ...                            
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~---------------------------- 1088 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSA---------------------------- 1088 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------cee----------------------------
Confidence            46778999999998775 4899999999999999986533110      000                            


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe-------EEEEee--c
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-------CLRVFS--H  427 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~-------~l~~~~--h  427 (531)
                                           +...++..-...+.++...+++ .+|.++.||.|++.++....       +.+...  .
T Consensus      1089 ---------------------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1089 ---------------------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred             ---------------------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence                                 0012222245678888888888 99999999999999987621       111111  2


Q ss_pred             CCce-EEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeEE---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          428 NNYV-TSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       428 ~~~V-~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      .+.+ ..-+|...... .++.+..-+.|..||+++....   +.....+.|++++.+|.++++++|+..|.+-+||++=+
T Consensus      1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence            2333 33345443344 7788888899999999987644   34555788999999999999999999999999999988


Q ss_pred             eEEEEeeeeecccccCCCceeeeEEEee
Q 009614          503 QLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       503 ~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .++..++.+       +...|+.+..+|
T Consensus      1228 ~~i~sw~~P-------~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1228 VPILSWEHP-------ARAPIRHVWLCP 1248 (1431)
T ss_pred             ceeecccCc-------ccCCcceEEeec
Confidence            888776543       224555555554

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=8.5e-11  Score=117.09  Aligned_cols=219  Identities=15%  Similarity=0.219  Sum_probs=156.1

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      +..+++|..++..++--.+.+-++++++|.+|++|.++....+..+..+.-++++|+.+|.++.|-.+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            445788888888866556777889999999999999997776666555666789999999999999998888765  889


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |++||.--+..+..+....                                                         -.+.
T Consensus       806 iHlWDPFigr~Laq~~dap---------------------------------------------------------k~~a  828 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAP---------------------------------------------------------KEGA  828 (1034)
T ss_pred             ceeecccccchhHhhhcCc---------------------------------------------------------ccCC
Confidence            9999986655433221000                                                         0111


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .+.|.++.--... .++-++...+|+++|.+.......++      .+..+.+++..| .|+.++++-..|.|.+.|.++
T Consensus       829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence            2233333211112 44445788999999999887766664      346689999999 999999999999999999999


Q ss_pred             CeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEE-EeCCCCeEEEE
Q 009614          461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDIKDNQLYQQ  507 (531)
Q Consensus       461 ~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i-wd~~~~~l~~~  507 (531)
                      ++++. |.........++ .|..+.|+....|.++.+ |...++....+
T Consensus       908 G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  908 GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence            99885 554444443333 355566777777777777 77666654443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=5e-10  Score=107.84  Aligned_cols=177  Identities=12%  Similarity=0.208  Sum_probs=136.2

Q ss_pred             eCCCC-eEEeeecC--CeEEEEeCCCCcccccccccceEEcccC--CCEEEEEEccC--CCEEEEEeCCCcEEEEEcccC
Q 009614          244 KPGDH-ELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILTMKFSLD--GQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       244 spdg~-~lasgs~d--g~I~vwd~~~~~~~~~~~~~~~~l~~H~--~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      ++... .+|+|+..  ..++|||+....+.++.-.......+-.  -.++++.|-+.  ...||+++.-+.|++||...+
T Consensus       157 ~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q  236 (412)
T KOG3881|consen  157 TDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ  236 (412)
T ss_pred             CCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence            34444 45668888  8999999987654443322222222222  24567889886  789999999999999998755


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      +                                                             +|+..+.--..+|+++..
T Consensus       237 R-------------------------------------------------------------RPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  237 R-------------------------------------------------------------RPVAQFDFLENPISSTGL  255 (412)
T ss_pred             C-------------------------------------------------------------cceeEeccccCcceeeee
Confidence            4                                                             344555555678999999


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce
Q 009614          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV  473 (531)
Q Consensus       397 sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v  473 (531)
                      -|++ .+++|..-+.+..||++.++.+.. +. ..+.|++|..+| ...++++++.|..|||+|+.+.+++.-......+
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~l  334 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRL  334 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccc
Confidence            9999 999999999999999999998877 43 788999999999 8899999999999999999998877655566677


Q ss_pred             EEEEEccCC
Q 009614          474 SAVCYCPDG  482 (531)
Q Consensus       474 ~~v~~spdg  482 (531)
                      +.|-+.++-
T Consensus       335 t~il~~~~~  343 (412)
T KOG3881|consen  335 TFILLRDDV  343 (412)
T ss_pred             cEEEecCCc
Confidence            777776543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=1.8e-10  Score=113.53  Aligned_cols=208  Identities=19%  Similarity=0.241  Sum_probs=144.6

Q ss_pred             ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC-CCCeeEEEeecCCcceeeeeccccccccc
Q 009614          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      ...|..|.+.|..|.|+..|..|++|+.|..|.+||+..+.....+.... ..+....|.+.....-             
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-------------  201 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-------------  201 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-------------
Confidence            34578899999999999999999999999999999998887655543221 1111112222222111             


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee----cCC
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNN  429 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~  429 (531)
                       ++..+.++.+.+-........ .....+..|.+.|.-++.-|..  .|++++.|+.+.-+|++++.+...+.    +..
T Consensus       202 -i~~~s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  202 -IVTSSRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             -ceeccccCceeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence             122233333322221111110 1134456799999999999987  89999999999999999876655542    333


Q ss_pred             ---ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE------E-Eec------CCCCceEEEEEccCCCEEEEEeCCCc
Q 009614          430 ---YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV------V-DYT------DIREIVSAVCYCPDGKGGIVGTMTGN  493 (531)
Q Consensus       430 ---~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~------~-~~~------~~~~~v~~v~~spdg~~l~sgs~dg~  493 (531)
                         ...+|+.+|...++|++|+.|..++|||.+.-..      + ++.      ...-.|++++|+.++.-|.++-.|-.
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~  359 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED  359 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence               6789999997778999999999999999876321      1 111      23446999999988888888888889


Q ss_pred             EEEEeC
Q 009614          494 CRFYDI  499 (531)
Q Consensus       494 I~iwd~  499 (531)
                      |+++.-
T Consensus       360 IYLF~~  365 (559)
T KOG1334|consen  360 IYLFNK  365 (559)
T ss_pred             eEEecc
Confidence            999954

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=9.7e-09  Score=106.85  Aligned_cols=115  Identities=14%  Similarity=0.158  Sum_probs=80.2

Q ss_pred             CeeEEEEcCCC-eEEEEe-CCCcEEEE--ECCC-CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCC
Q 009614          390 EVLDLSWSKNG-FLLSSS-ADKTVRLW--QVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRR  460 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s-~Dg~V~lw--dl~~-~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~  460 (531)
                      .....+|+|+| .|+..+ .++...||  ++.. +.....+. +...+....|+| |+++|+..+.+   ..|.+||+.+
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence            34567999999 666554 46655555  4432 22233333 445678899999 89988876543   4799999999


Q ss_pred             CeEEEecCCCCceEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeEE
Q 009614          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLY  505 (531)
Q Consensus       461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~~~~l~  505 (531)
                      ++...+......+....|+|||++|+....   ...|+++|+.+++..
T Consensus       361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            987766554456778999999998876543   346888899887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.13  E-value=7.6e-08  Score=95.90  Aligned_cols=241  Identities=10%  Similarity=0.050  Sum_probs=147.5

Q ss_pred             eeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccceEEcc-------cCCCEEEEEEccCCCEEEEEe-
Q 009614          242 TLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA-------HEGSILTMKFSLDGQYLASGG-  303 (531)
Q Consensus       242 ~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~~~l~~-------H~~~I~~l~fspdg~~Lasgs-  303 (531)
                      .++|||+.+.++.          .+..|.|||..+....       .++.-       ....-..++++|||++|+... 
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~-------~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI-------ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-------eEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence            3899999887654          4899999999865532       12221       112344789999999998776 


Q ss_pred             C-CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          304 E-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       304 ~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      . +..|.+.|+.+++.+.++..+.    |....+...........+....    .+....++....-....+.....++ 
T Consensus       125 ~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~Dg~~~----~v~~d~~g~~~~~~~~vf~~~~~~v-  195 (352)
T TIGR02658       125 SPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCRDGSLA----KVGYGTKGNPKIKPTEVFHPEDEYL-  195 (352)
T ss_pred             CCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEeecCceE----EEEecCCCceEEeeeeeecCCcccc-
Confidence            3 7899999999999988887633    2222222111111111111111    0111111111111111100000000 


Q ss_pred             EeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCC-----CeEEEEee--------cCCceEEEEEeeCCCCEEEEE
Q 009614          383 EFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~-----~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sg  447 (531)
                        .  ..+    .+.+ +| ++..... |+|.+.|+..     ......+.        .+..+.-++++| +++.+++.
T Consensus       196 --~--~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~  265 (352)
T TIGR02658       196 --I--NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLL  265 (352)
T ss_pred             --c--cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEE
Confidence              0  111    3345 66 5555554 9999999643     33333332        233445599999 77777664


Q ss_pred             e----------CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEEe
Q 009614          448 S----------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       448 s----------~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~~~~l~~~~  508 (531)
                      .          ..+.|.++|..+++++........+..++++|||+ +|++.. .++.|.++|+.+++.+.++
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            2          12479999999999998777778999999999999 777666 5788999999999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=4.5e-09  Score=106.39  Aligned_cols=181  Identities=18%  Similarity=0.247  Sum_probs=134.7

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCccccceecCCC-CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614          294 LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (531)
Q Consensus       294 pdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (531)
                      |-+.|+|....||.++||+..+++....+..... ...|.                                 +..|.. 
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~---------------------------------~~~w~L-   48 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCT---------------------------------YTKWGL-   48 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcce---------------------------------eEEEEE-
Confidence            4567999999999999999999887666543211 11121                                 122210 


Q ss_pred             cccccCcceeEeecCCCCeeEEEE----cCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEE
Q 009614          373 VFRLLEKPLHEFQGHSSEVLDLSW----SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYF  444 (531)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~I~~l~~----sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l  444 (531)
                        .....|.        ...++.|    +.+. .++-|...|.|.+|++..++....+.   |.+.|+++.++. +-..|
T Consensus        49 --~~~~s~~--------k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ci  117 (541)
T KOG4547|consen   49 --SADYSPM--------KWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCI  117 (541)
T ss_pred             --EeccchH--------HHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCce
Confidence              0000111        1111111    1222 88899999999999999999888875   999999999998 88899


Q ss_pred             EEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCcee
Q 009614          445 ISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI  523 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~I  523 (531)
                      .+++.|+.+..|+...++.+. +......+.+++++|||..+++|+  +.|++||+++++++..+..+        +..|
T Consensus       118 yS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh--------~s~v  187 (541)
T KOG4547|consen  118 YSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH--------GSPV  187 (541)
T ss_pred             EecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC--------Ccce
Confidence            999999999999999998884 777888899999999999999987  68999999999999877633        4566


Q ss_pred             eeEEEe
Q 009614          524 TGFQVV  529 (531)
Q Consensus       524 t~l~f~  529 (531)
                      ..++|.
T Consensus       188 ~t~~f~  193 (541)
T KOG4547|consen  188 RTLSFT  193 (541)
T ss_pred             EEEEEE
Confidence            666664

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=9.8e-10  Score=117.55  Aligned_cols=149  Identities=23%  Similarity=0.416  Sum_probs=124.2

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      +-++++.-++++|+.-+.|.+|.....+...       -+.||.+.|..+.|+.||++++++++|.++++|++.+.+...
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence            4567777889999999999999987322221       478999999999999999999999999999999998776321


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~  400 (531)
                                                                                   ....+|+..|..+.+.|+ 
T Consensus       212 -------------------------------------------------------------~~~fgHsaRvw~~~~~~n-  229 (967)
T KOG0974|consen  212 -------------------------------------------------------------CTGFGHSARVWACCFLPN-  229 (967)
T ss_pred             -------------------------------------------------------------cccccccceeEEEEeccc-
Confidence                                                                         224579999999999999 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEee-c-CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~-h-~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .+++++.|.+.++|+....+. ..+. | ...++.++..+ +...+++++.|+.+++|++..
T Consensus       230 ~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            999999999999997654443 3553 4 45789999998 888999999999999999864

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.09  E-value=2.4e-10  Score=127.47  Aligned_cols=200  Identities=19%  Similarity=0.315  Sum_probs=153.7

Q ss_pred             eeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      ..+.+.+.++.-+|...+.++|+.||.|++|....+.....    .+  .+....|+.+.|+.+|+.+..+..||.+.+|
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----ee--ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence            33445556678899999999999999999999886554322    11  1233789999999999999999999999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      .+..                                                               ++....+.|....
T Consensus      2279 q~~p---------------------------------------------------------------k~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2279 QASP---------------------------------------------------------------KPYTSWQCHNKAL 2295 (2439)
T ss_pred             ccCC---------------------------------------------------------------cceeccccCCccc
Confidence            8741                                                               2344456788888


Q ss_pred             eEEEEcCCCeEEEE---eCCCcEEEEECCC--CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          392 LDLSWSKNGFLLSS---SADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       392 ~~l~~sp~~~l~s~---s~Dg~V~lwdl~~--~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      .++.|... .++++   +.++.+.+||.--  +..+....|.+.++++++-| ..++|++|+.+|.|++||++..++.+.
T Consensus      2296 ~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2296 SDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred             cceeeeeh-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHH
Confidence            88888763 44444   3578899999653  33333345999999999999 899999999999999999998887643


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ...        +. ...++++|+..|.++||++..-.++..++..
T Consensus      2374 ~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2374 FQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             hhh--------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            222        33 5568999999999999999998888776644

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.08  E-value=6.6e-08  Score=98.27  Aligned_cols=188  Identities=16%  Similarity=0.197  Sum_probs=127.8

Q ss_pred             EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCe
Q 009614          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS  330 (531)
Q Consensus       251 asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~  330 (531)
                      ++-..++.|.|.|..+.+       ....+..+...-..+.|+|||+++++++.||.|.++|+.+++.+.++..      
T Consensus        10 V~~~~~~~v~viD~~t~~-------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------   76 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNK-------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------   76 (369)
T ss_dssp             EEEGGGTEEEEEETTT-S-------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------
T ss_pred             EEecCCCEEEEEECCCCe-------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------
Confidence            455678999999987533       2233444333334578999999999999999999999988875544321      


Q ss_pred             eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE-eCC
Q 009614          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SAD  408 (531)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~-s~D  408 (531)
                                                                               .....+++++++| +++++ ..+
T Consensus        77 ---------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~~   99 (369)
T PF02239_consen   77 ---------------------------------------------------------GGNPRGIAVSPDGKYVYVANYEP   99 (369)
T ss_dssp             ---------------------------------------------------------SSEEEEEEE--TTTEEEEEEEET
T ss_pred             ---------------------------------------------------------CCCcceEEEcCCCCEEEEEecCC
Confidence                                                                     2235678999999 55544 578


Q ss_pred             CcEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEE--EecCCCCceEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV--DYTDIREIVSAVC  477 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~  477 (531)
                      +.+.++|.++.+.++.+.        ....+..|..+| ....++..-. -+.|.+.|....+.+  .............
T Consensus       100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~  178 (369)
T PF02239_consen  100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG  178 (369)
T ss_dssp             TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred             CceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence            999999999999998875        134678888888 6665555544 488888887765433  4555666788899


Q ss_pred             EccCCCEEEEE-eCCCcEEEEeCCCCeEEEEee
Q 009614          478 YCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       478 ~spdg~~l~sg-s~dg~I~iwd~~~~~l~~~~~  509 (531)
                      |.|++++++++ ..++.|-++|+.++++.....
T Consensus       179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             cCcccceeeecccccceeEEEeeccceEEEEee
Confidence            99999988665 557789999999998876544

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=2.7e-08  Score=104.24  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=117.8

Q ss_pred             eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcccCccccceecCCCCCeeEEE
Q 009614          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (531)
Q Consensus       258 ~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~  334 (531)
                      +|.++|.....        .+.+..|...+....|+|||+.|+..+.+   ..|.+|++.+++...              
T Consensus       180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------  237 (430)
T PRK00178        180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------  237 (430)
T ss_pred             EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence            46677765332        12345577789999999999999876643   358888886654210              


Q ss_pred             eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCC--c
Q 009614          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T  410 (531)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg--~  410 (531)
                                                                       +....+.+....|+|+| .|+ +...++  .
T Consensus       238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence                                                             01112233467899999 554 455555  5


Q ss_pred             EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEE
Q 009614          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV  487 (531)
Q Consensus       411 V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  487 (531)
                      |.+||+.++.......+........|+| +++.|+..+. +|  .|+++++.+++...+...........|+|||++|+.
T Consensus       269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence            8888999887665555666667789999 8887766553 33  588888888776544332333456789999999988


Q ss_pred             EeCC-C--cEEEEeCCCCeEE
Q 009614          488 GTMT-G--NCRFYDIKDNQLY  505 (531)
Q Consensus       488 gs~d-g--~I~iwd~~~~~l~  505 (531)
                      .+.+ +  .|.+||+.+++..
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~  368 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR  368 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE
Confidence            7653 3  4888999887653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=3e-08  Score=103.98  Aligned_cols=176  Identities=19%  Similarity=0.195  Sum_probs=115.1

Q ss_pred             eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcccCccccceecCCCCCeeEEE
Q 009614          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG--TVRVWKVIEHERLDGFDVQDTDPSCLYF  334 (531)
Q Consensus       258 ~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~  334 (531)
                      .|.++|......        +.+..+...+....|+|||+.|+..+. ++  .|.+||+.+++...              
T Consensus       199 ~l~i~d~dG~~~--------~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------  256 (448)
T PRK04792        199 QLMIADYDGYNE--------QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------  256 (448)
T ss_pred             EEEEEeCCCCCc--------eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------
Confidence            566667654321        234456778899999999998887654 33  47777776553210              


Q ss_pred             eecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeCCCc--
Q 009614          335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT--  410 (531)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~Dg~--  410 (531)
                                                                    +..+.   +.....+|+|+| .|+ +.+.++.  
T Consensus       257 ----------------------------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        257 ----------------------------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             ----------------------------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeE
Confidence                                                          01111   122357899999 554 4566665  


Q ss_pred             EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEE
Q 009614          411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV  487 (531)
Q Consensus       411 V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  487 (531)
                      |.+||+.+++......+.......+|+| |+++|+..+. ++  .|.++|+.+++...+..........+|+|||++|+.
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence            7788998887665555666678899999 8887766553 33  577778888776554333333455799999999887


Q ss_pred             EeCC-C--cEEEEeCCCCeEE
Q 009614          488 GTMT-G--NCRFYDIKDNQLY  505 (531)
Q Consensus       488 gs~d-g--~I~iwd~~~~~l~  505 (531)
                      .+.+ +  .|.++|+.+++..
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~  387 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQ  387 (448)
T ss_pred             EEecCCceEEEEEECCCCCeE
Confidence            6653 3  4666788877653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.04  E-value=9.3e-09  Score=95.76  Aligned_cols=229  Identities=15%  Similarity=0.182  Sum_probs=145.8

Q ss_pred             cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEEcccCccccceecCCCC--
Q 009614          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTD--  328 (531)
Q Consensus       255 ~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~--  328 (531)
                      ..|++.+|++...+..  .+...|  ..-+..+..|.|+.   +|. .|+-+-.+|.|.++..........+......  
T Consensus        44 R~Gkl~Lys~~d~~~~--~l~~~q--~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLS--PLDTLQ--CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             eccceEEEeecccccC--ccceee--eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence            4578888888755432  222221  12346788888864   555 6677788899999987655443333221111  


Q ss_pred             ----CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eE
Q 009614          329 ----PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FL  402 (531)
Q Consensus       329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l  402 (531)
                          ..++.+......                .+.....+.+.........  -+.++.++.|.-+++...|+...  .+
T Consensus       120 ~~~~~lslD~~~~~~~----------------i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlv  181 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTK----------------IFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLV  181 (339)
T ss_pred             hheeeeEEEeeccCce----------------EEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceE
Confidence                111122221111                1111222222211111111  12355788899999999998765  89


Q ss_pred             EEEeCCCcEEEEECC-CCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-CeEEEecCCCCceEEEEE
Q 009614          403 LSSSADKTVRLWQVG-IDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCY  478 (531)
Q Consensus       403 ~s~s~Dg~V~lwdl~-~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-~~~~~~~~~~~~v~~v~~  478 (531)
                      ++|+.|+.+..||++ .++++..-  .|...|.+|.-+|..+.++++|+.|..|++||.++ ++++.-....+.|+.+++
T Consensus       182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~  261 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH  261 (339)
T ss_pred             EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence            999999999999999 44444432  38899999999987889999999999999999994 677766667799999999


Q ss_pred             ccCCC-EEEEEeCCCcEEEEeCCCCeEE
Q 009614          479 CPDGK-GGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       479 spdg~-~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      +|.-. .|+.++.-+-.+|-+.+.+...
T Consensus       262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e  289 (339)
T KOG0280|consen  262 HPEIFHRLLAACMHNGAKILDSSDKVLE  289 (339)
T ss_pred             cchhhhHHHHHHHhcCceEEEecccccc
Confidence            99532 2333334344777777665544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=6.3e-08  Score=97.61  Aligned_cols=243  Identities=14%  Similarity=0.213  Sum_probs=148.2

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC--EEEE-----EeCCCcEEEEEc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLAS-----GGEDGTVRVWKV  313 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Las-----gs~Dg~I~iWd~  313 (531)
                      ..|++|..+.|- -..+.+++|+.......        .-+-|...|..+.+||.+.  .+|+     .|.-+.|+||..
T Consensus       131 ~qfs~dEsl~ar-lv~nev~f~~~~~f~~~--------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~  201 (566)
T KOG2315|consen  131 PQFSIDESLAAR-LVSNEVQFYDLGSFKTI--------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY  201 (566)
T ss_pred             cccccchhhhhh-hhcceEEEEecCCccce--------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence            467777665433 23577999998863222        1223678899999999643  4444     355678999998


Q ss_pred             ccCccccceecCC-CCCeeEEEeecC--CcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          314 IEHERLDGFDVQD-TDPSCLYFTINH--LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       314 ~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ........+.... .....+.+.++.  ...++....+-++....    --+...++++....     .....--...++
T Consensus       202 ~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~S----YYGEq~Lyll~t~g-----~s~~V~L~k~GP  272 (566)
T KOG2315|consen  202 PEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNAS----YYGEQTLYLLATQG-----ESVSVPLLKEGP  272 (566)
T ss_pred             ccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcc----ccccceEEEEEecC-----ceEEEecCCCCC
Confidence            6433322221111 112233444443  33333322222211111    11222333333321     011111224789


Q ss_pred             eeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCCeEE
Q 009614          391 VLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVV  464 (531)
Q Consensus       391 I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~  464 (531)
                      |.++.|+|++   -++-|-+-..+.|||++.. ++..| ..++=+++-|+| .+++++.++.+   |.|-|||+.+.+.+
T Consensus       273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df-~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF-PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC-CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhc
Confidence            9999999999   4556678899999999654 33333 356678899999 99999888765   78999999998777


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeEEE
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~l~~  506 (531)
                      ....... -+-..|+|||++++|++.      |+.++||+.. |.++.
T Consensus       350 ~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~  395 (566)
T KOG2315|consen  350 AKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH  395 (566)
T ss_pred             cccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence            5333333 345799999999999887      6789999987 44443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.01  E-value=2.4e-08  Score=101.21  Aligned_cols=114  Identities=16%  Similarity=0.255  Sum_probs=96.6

Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ..|.+.|+++.++.+- .|.+++.|+.+..|+....+.++.+. .+..+.+++.+| |+..+++++  +.|++||+.+++
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~ke  175 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKE  175 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCce
Confidence            4589999999998876 99999999999999999999988886 667789999999 899999887  589999999999


Q ss_pred             EE-EecCCCCceEEEEEccC-----CCEEEEE-eCCCcEEEEeCCC
Q 009614          463 VV-DYTDIREIVSAVCYCPD-----GKGGIVG-TMTGNCRFYDIKD  501 (531)
Q Consensus       463 ~~-~~~~~~~~v~~v~~spd-----g~~l~sg-s~dg~I~iwd~~~  501 (531)
                      ++ .+.+|.++|.++.|.-+     |.+++++ ..+.-+.+|-+..
T Consensus       176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            87 69999999999999887     6666554 3344577776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.99  E-value=2.6e-06  Score=86.36  Aligned_cols=250  Identities=14%  Similarity=0.210  Sum_probs=148.2

Q ss_pred             cceeeeCCCCeEEeeec----CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 009614          239 GSATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKV  313 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~----dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~  313 (531)
                      .-++++|++++|.+...    .+.|..|.+......+.   ..............++++|++++|+++.. +|.|.++++
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~---~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT---LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE---EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE---EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34889999999988765    57999998875422222   22223223345667999999999998874 899999999


Q ss_pred             ccCccccce-e-------------cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc--cc
Q 009614          314 IEHERLDGF-D-------------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR--LL  377 (531)
Q Consensus       314 ~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  377 (531)
                      .....+... .             .....+.++.+.++.. .++..+...              ..+.++......  +.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~--------------D~v~~~~~~~~~~~l~  181 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGA--------------DRVYVYDIDDDTGKLT  181 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTT--------------TEEEEEEE-TTS-TEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCC--------------CEEEEEEEeCCCceEE
Confidence            774222211 0             0111222333333222 122222221              123333222111  11


Q ss_pred             CcceeEee-cCCCCeeEEEEcCCC-e-EEEEeCCCcEEEEECC--CCeE--EEEee-------cCCceEEEEEeeCCCCE
Q 009614          378 EKPLHEFQ-GHSSEVLDLSWSKNG-F-LLSSSADKTVRLWQVG--IDRC--LRVFS-------HNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       378 ~~~~~~~~-~h~~~I~~l~~sp~~-~-l~s~s~Dg~V~lwdl~--~~~~--l~~~~-------h~~~V~sv~fsp~d~~~  443 (531)
                      .  ...+. ........+.|+|++ + .++.-.+++|.++++.  .+..  +....       .......|+++| ++++
T Consensus       182 ~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~  258 (345)
T PF10282_consen  182 P--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRF  258 (345)
T ss_dssp             E--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSE
T ss_pred             E--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCE
Confidence            1  22222 234567899999998 4 4555678889999988  4432  22222       123678999999 8988


Q ss_pred             EEEEe-CCCeEEEEeCC--CCeEE--Ee-cCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeC--CCCeEEEEee
Q 009614          444 FISGS-IDGKVRIWEVR--RCQVV--DY-TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDI--KDNQLYQQNQ  509 (531)
Q Consensus       444 l~sgs-~Dg~I~Iwd~~--~~~~~--~~-~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~--~~~~l~~~~~  509 (531)
                      |+++. ..+.|.+|++.  ++++.  .. .........++++|+|++|+++.. ++.|.+|++  .+|++....+
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence            77755 56789999994  34332  22 223445899999999999998874 668999866  5788765543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.96  E-value=9.2e-09  Score=95.82  Aligned_cols=193  Identities=15%  Similarity=0.177  Sum_probs=138.0

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ++.|++.+..++++..+|.+.+-+....     .+...|.+++|.-+++..+|+. +.+++.+||+|+.+..||++-.+ 
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-  199 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-  199 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-
Confidence            4678999999999999999985443321     3445567899999999999986 55689999999999999986221 


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                        ++                                             +            .+..+-|...|.+|.-+|
T Consensus       200 --~~---------------------------------------------i------------~~n~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  200 --TF---------------------------------------------I------------WHNSKVHTSGVVSIYSSP  220 (339)
T ss_pred             --ce---------------------------------------------e------------eecceeeecceEEEecCC
Confidence              00                                             0            111345888999998888


Q ss_pred             CC--eEEEEeCCCcEEEEECC-CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE-----E-EecCC
Q 009614          399 NG--FLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-----V-DYTDI  469 (531)
Q Consensus       399 ~~--~l~s~s~Dg~V~lwdl~-~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~-----~-~~~~~  469 (531)
                      ..  ++++|+.|-.|++||.+ -++++..-.-.+.|+.+.++|.....++.++.-.-.+|-+...+..     . ....|
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h  300 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH  300 (339)
T ss_pred             CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc
Confidence            65  99999999999999999 5777777677799999999996555555556656677777765421     1 24555


Q ss_pred             CCceEEEEEccCCCEEEEEe-CCCcEE-EE
Q 009614          470 REIVSAVCYCPDGKGGIVGT-MTGNCR-FY  497 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs-~dg~I~-iw  497 (531)
                      ....+.-.|......|++++ .|..++ +|
T Consensus       301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             cceeeccccccccceeeeeeccccceeeee
Confidence            56566666644445567644 344433 44

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.94  E-value=6.2e-09  Score=97.48  Aligned_cols=250  Identities=19%  Similarity=0.263  Sum_probs=152.6

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCc-ccccccccceEEcccC------------CCEEEEEEccCCC--EE
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-RELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YL  299 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~-~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~L  299 (531)
                      .+.+.++.|...|.++++|.+.|+|.++.-.+.. .+..   ...++++|.            ..|..+.|..++.  .+
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            3567788999999999999999999999766443 1111   112355554            3588899977543  56


Q ss_pred             EEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCC-CceEEEeCCccccccC
Q 009614          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-DLTCVVLPPKVFRLLE  378 (531)
Q Consensus       300 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  378 (531)
                      +..+.|++|++|.+........-...-    .-.+.....+.+..       ......-..+. +..+..          
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnl----s~~~~~~~~g~~~s-------~~~l~lprls~hd~iiaa----------  161 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNL----SDSFHSPMGGPLTS-------TKELLLPRLSEHDEIIAA----------  161 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhcccc----ccccccccCCCcCC-------HHHhhcccccccceEEEe----------
Confidence            667789999999987653211110000    00000000000000       00000011111 111112          


Q ss_pred             cceeEe-ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEe---ec-----CCceEEEEEeeCCCCEEEEEe
Q 009614          379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVF---SH-----NNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       379 ~~~~~~-~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~-~l~~~---~h-----~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      +|.+.+ ..|...|+++.++.+...+.++.|-.|.+|++.-.. +....   .|     ..-|++..|+|...+.|.-.+
T Consensus       162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs  241 (460)
T COG5170         162 KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS  241 (460)
T ss_pred             ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence            222222 568889999999998844455668889999987432 21111   13     245899999998888898889


Q ss_pred             CCCeEEEEeCCCCeEE---------E--------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-EEEEee
Q 009614          449 IDGKVRIWEVRRCQVV---------D--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ-LYQQNQ  509 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~---------~--------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~-l~~~~~  509 (531)
                      ..|.|++-|++...+-         .        +......|..+.|+++|+++++-.. -+|+|||++..+ ++.+++
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence            9999999999843211         0        1222346888999999999988775 579999997543 444443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.93  E-value=1.9e-07  Score=93.10  Aligned_cols=206  Identities=17%  Similarity=0.270  Sum_probs=126.0

Q ss_pred             CCEEEEEEccCC--CEEEE-----EeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          285 GSILTMKFSLDG--QYLAS-----GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       285 ~~I~~l~fspdg--~~Las-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      ..|....|+|.|  ..||.     .+.+++++||.+..+..+............+.|.......++.+.... +..+.  
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKs--  250 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKS--  250 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccc--
Confidence            457777788743  33444     356778888888755544433333322223333333322222221111 11110  


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEE
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV  434 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv  434 (531)
                        .-+...++++...     +..+.....-.++|.+++|.|.+   -+++|-++..+.++|++..  +..+.....=+.+
T Consensus       251 --yfgesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~  321 (561)
T COG5354         251 --YFGESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTI  321 (561)
T ss_pred             --eeccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccc
Confidence              1112233333332     22233333567899999999987   4556678999999999887  4444455566788


Q ss_pred             EEeeCCCCEEEEEeCC---CeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCCe
Q 009614          435 AFNPVDDNYFISGSID---GKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQ  503 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~~  503 (531)
                      .|+| ..++++.++.|   |.|-|||......+.  +.+..  .+-+.|+|||+++.+...      |..|.|||+....
T Consensus       322 ~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         322 FFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             cccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            9999 89999998776   679999998765543  33332  344679999999887654      7789999998665


Q ss_pred             EE
Q 009614          504 LY  505 (531)
Q Consensus       504 l~  505 (531)
                      ..
T Consensus       399 ~f  400 (561)
T COG5354         399 VF  400 (561)
T ss_pred             hh
Confidence            44

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.92  E-value=4.7e-07  Score=103.81  Aligned_cols=227  Identities=9%  Similarity=0.073  Sum_probs=140.9

Q ss_pred             ccceeeeCCCCeEEee-ecCCeEEEEeCCCCcccccc--cccceEEccc-------CCCEEEEEEcc-CCCEEEEEeCCC
Q 009614          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSS--LYTGQEFLAH-------EGSILTMKFSL-DGQYLASGGEDG  306 (531)
Q Consensus       238 ~~s~~fspdg~~lasg-s~dg~I~vwd~~~~~~~~~~--~~~~~~l~~H-------~~~I~~l~fsp-dg~~Lasgs~Dg  306 (531)
                      ...+++++++..|.++ ...+.|++++..+.....-.  ......+.+.       -..-+.|+|+| ++.++++.+.++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~  705 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH  705 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence            3458899888765554 44678998887653321000  0000000010       11236899999 566667777889


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|++||..++... .+            .....  ..                 ..++.               .. ...
T Consensus       706 ~I~v~d~~~g~v~-~~------------~G~G~--~~-----------------~~~g~---------------~~-~~~  737 (1057)
T PLN02919        706 QIWEYNISDGVTR-VF------------SGDGY--ER-----------------NLNGS---------------SG-TST  737 (1057)
T ss_pred             eEEEEECCCCeEE-EE------------ecCCc--cc-----------------cCCCC---------------cc-ccc
Confidence            9999998665421 01            00000  00                 00000               00 001


Q ss_pred             CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-------------e-c--------CCceEEEEEeeCCCC
Q 009614          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-------------S-H--------NNYVTSVAFNPVDDN  442 (531)
Q Consensus       387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-------------~-h--------~~~V~sv~fsp~d~~  442 (531)
                      .......|+++|++  ++++-+.++.|++||+.++......             . .        -.....|+++| +++
T Consensus       738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~  816 (1057)
T PLN02919        738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQ  816 (1057)
T ss_pred             cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCc
Confidence            12345679999997  5556667799999999876532111             0 0        11246889999 889


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEecCCC--------------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          443 YFISGSIDGKVRIWEVRRCQVVDYTDIR--------------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~--------------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      ++++-+.++.|++||..++.+....+..              .....|+++++|+++++-+.++.|++||+.+++..+..
T Consensus       817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~  896 (1057)
T PLN02919        817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEIL  896 (1057)
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccceeE
Confidence            9999999999999999988776543321              25678999999998888889999999999998765444


Q ss_pred             eeeec
Q 009614          509 QICLQ  513 (531)
Q Consensus       509 ~~~~~  513 (531)
                      .+.+.
T Consensus       897 ~l~~~  901 (1057)
T PLN02919        897 TLELK  901 (1057)
T ss_pred             eeccc
Confidence            44433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.91  E-value=8.1e-07  Score=83.24  Aligned_cols=249  Identities=13%  Similarity=0.067  Sum_probs=126.5

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      ++.+.+|++||+- .|..|-|...++.-...  ...++.-+...-.=+.++||||+.+||.+...|+|+++|+..... .
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si--~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI--IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-F   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhe--eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-E
Confidence            4567788888776 67888887665433221  112222233333456799999999999999999999999865432 2


Q ss_pred             ceecCCC-------CCeeEEEeecCCcceeeeeccccccccccccccCCCceE--EEeCC-ccccccCcceeEeec-CCC
Q 009614          321 GFDVQDT-------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC--VVLPP-KVFRLLEKPLHEFQG-HSS  389 (531)
Q Consensus       321 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~-h~~  389 (531)
                      .+.....       .+..+.|.......          ......+.....+.+  +.... ..-...+.....+.. +..
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~----------~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~  148 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSA----------QWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH  148 (282)
T ss_pred             EcCcccccCCccccceeeeEeecccccc----------ccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence            3222111       11112222211000          000001111111111  11110 000111111222333 467


Q ss_pred             CeeEEEEcCCC-eEE-EEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE-EeCCC------eEEEEeCCC
Q 009614          390 EVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDG------KVRIWEVRR  460 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~-s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s-gs~Dg------~I~Iwd~~~  460 (531)
                      .|.++.++|.. +|+ .|+....-..+..          ....+++=..-.....+..+ ...|+      +-.+|.+-+
T Consensus       149 Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a----------~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  149 GINSAVYHPKHRLLLVGGCEQNQDGMSKA----------SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             ceeEEEEcCCCCEEEEeccCCCCCccccc----------cccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence            99999999986 444 4444332111100          01111111111101111111 11111      123444443


Q ss_pred             CeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614          461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ  513 (531)
Q Consensus       461 ~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~  513 (531)
                      .+... .......|..|..+|||+.||+...+|.|.+|++.+-+++..++..-+
T Consensus       219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            33332 234567899999999999999999999999999999888887765533

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=7.1e-07  Score=90.21  Aligned_cols=257  Identities=16%  Similarity=0.218  Sum_probs=154.4

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-----eCC-----CcEE
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-----GED-----GTVR  309 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-----s~D-----g~I~  309 (531)
                      ..+++++|+++|.+. ++.++|++.......+         .-....++++.|+|.|.+|.|-     ..+     ..++
T Consensus        39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~l---------t~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVVL---------CVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             eEEEcCCCcEEEEEc-CCeEEEEEccCCcEEE---------EeccceeeeeeecccccccccccccccccCCCCCCCcee
Confidence            468899999988874 5789999887554221         1112268999999999999873     122     3477


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCC-------cceeeeeccccc----------cccc--------------ccc
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL-------SQLIPIDVDKEK----------IDKT--------------KSL  358 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~--------------~~~  358 (531)
                      +|++.++.....+........+..|+.+..       +.+.........          +...              ..-
T Consensus       109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence            999998655444443333323333333321       111111111100          0000              011


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEE--EeCCC---------cEEEEECCCCeEEEEe
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS--SSADK---------TVRLWQVGIDRCLRVF  425 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s--~s~Dg---------~V~lwdl~~~~~l~~~  425 (531)
                      .++....+.+|.... ....+++..-.-....=..+.|++-|  +|+.  .--|+         ++++.++....+...+
T Consensus       189 ~kGaPa~vri~~~~~-~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L  267 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPE-EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL  267 (566)
T ss_pred             CCCCCcEEEEecccc-ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence            122222333332221 00011111111112334568898877  4333  33343         6888888877777777


Q ss_pred             ecCCceEEEEEeeCCCCEEEE--EeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC---CCcEEEEeCC
Q 009614          426 SHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIK  500 (531)
Q Consensus       426 ~h~~~V~sv~fsp~d~~~l~s--gs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~  500 (531)
                      ...++|.+++|+| ++.-|++  |-.-.++.|||++..-+..+.  .++-+++-|+|.|++|+.++-   -|.+-|||+.
T Consensus       268 ~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  268 LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            8899999999999 7766655  456779999999976655443  456678999999999998776   4789999999


Q ss_pred             CCeEEEEeee
Q 009614          501 DNQLYQQNQI  510 (531)
Q Consensus       501 ~~~l~~~~~~  510 (531)
                      +.+++.++..
T Consensus       345 n~K~i~~~~a  354 (566)
T KOG2315|consen  345 NRKLIAKFKA  354 (566)
T ss_pred             chhhcccccc
Confidence            9888876653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.81  E-value=4.4e-08  Score=95.09  Aligned_cols=79  Identities=23%  Similarity=0.552  Sum_probs=69.7

Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .-||-..+++++|+||+ +++++..|..||+-....-..+..|  +|...|..++.-+  ++.|++|+.|++|++||+.+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence            46799999999999999 9999999999999888776666665  5999999999976  56689999999999999999


Q ss_pred             CeEE
Q 009614          461 CQVV  464 (531)
Q Consensus       461 ~~~~  464 (531)
                      ++.+
T Consensus       225 gk~L  228 (390)
T KOG3914|consen  225 GKLL  228 (390)
T ss_pred             CCcc
Confidence            8866

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=5.4e-07  Score=93.87  Aligned_cols=180  Identities=11%  Similarity=0.055  Sum_probs=110.9

Q ss_pred             cceeeeCCCCeEEeeec-CC----eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEE
Q 009614          239 GSATLKPGDHELTLGQR-MR----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWK  312 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~-dg----~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd  312 (531)
                      ...+|+|||+.||..+. +|    .+.+|++.....    ....+...++.+.....+|+|||+.|+..+ .+|...||.
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~----g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI----GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCC----CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            34789999998886442 23    334455543210    001112222333456789999999887765 466666664


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      +.-...       .                                                    .....+..+...+.
T Consensus       310 ~~~~~~-------g----------------------------------------------------~~~~~lt~~~~~~~  330 (428)
T PRK01029        310 MQIDPE-------G----------------------------------------------------QSPRLLTKKYRNSS  330 (428)
T ss_pred             EECccc-------c----------------------------------------------------cceEEeccCCCCcc
Confidence            321000       0                                                    00111222334566


Q ss_pred             EEEEcCCC-eEEEEeCC---CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC---CCeEEEEeCCCCeEEE
Q 009614          393 DLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVD  465 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~D---g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~---Dg~I~Iwd~~~~~~~~  465 (531)
                      ...|+|+| .|+..+.+   ..|.+||+.+++..........+....|+| +++.|+..+.   ...|.+||+.+++...
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLITKKTRK  409 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            78999999 66655443   469999999887765544445678899999 8887765433   3578999999887776


Q ss_pred             ecCCCCceEEEEEccCC
Q 009614          466 YTDIREIVSAVCYCPDG  482 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg  482 (531)
                      +......+...+|+|-.
T Consensus       410 Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        410 IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             eecCCCcccCceecCCC
Confidence            66555667778888753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=6.4e-08  Score=94.01  Aligned_cols=105  Identities=20%  Similarity=0.348  Sum_probs=90.2

Q ss_pred             EEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccC
Q 009614          404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPD  481 (531)
Q Consensus       404 s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spd  481 (531)
                      ..+....+.+|....+.+...+.|-.-++.|+|+| |+++|+++..|.+|||-.....-.+.  ..+|..-|..++..++
T Consensus       127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~  205 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN  205 (390)
T ss_pred             ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence            44556677788877788888889999999999999 99999999999999998888776664  6789999999999866


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       482 g~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      . .|++|+.|+++++||+.+|+.+..+.+
T Consensus       206 ~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  206 Y-LLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             c-eeeecCCCCcEEEEecccCCcccccch
Confidence            4 589999999999999999999876653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=7.8e-08  Score=91.47  Aligned_cols=200  Identities=14%  Similarity=0.271  Sum_probs=131.1

Q ss_pred             CeEEeeecCCeEEEEeCCCCccccc--------------cc--------------ccceE-EcccCCCEEEEEEccCCCE
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELS--------------SL--------------YTGQE-FLAHEGSILTMKFSLDGQY  298 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~--------------~~--------------~~~~~-l~~H~~~I~~l~fspdg~~  298 (531)
                      ..++..+.|.+|++|.+........              .+              .+.+. -.+|+--|++|.++.|+..
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            3456677899999998875443220              00              01111 2368889999999999998


Q ss_pred             EEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       299 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      ++++ +|=.|.+|++.-......+                      ++..+                             
T Consensus       179 ~lSA-DdLRINLWnlei~d~sFnI----------------------VDIKP-----------------------------  206 (433)
T KOG1354|consen  179 FLSA-DDLRINLWNLEIIDQSFNI----------------------VDIKP-----------------------------  206 (433)
T ss_pred             Eeec-cceeeeeccccccCCceeE----------------------EEccc-----------------------------
Confidence            8877 5678999997432211000                      00000                             


Q ss_pred             cceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEE----EEee-------------cCCceEEEEEeeC
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCL----RVFS-------------HNNYVTSVAFNPV  439 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l----~~~~-------------h~~~V~sv~fsp~  439 (531)
                         ..+..-+.-|++..|+|..  .++-++..|+|+|-|++.....    +.|.             --..|..+.|++ 
T Consensus       207 ---~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-  282 (433)
T KOG1354|consen  207 ---ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-  282 (433)
T ss_pred             ---cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-
Confidence               0011123457788899976  8888888999999999843221    2221             124578899999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CeEE-EecCCC------------Cc---eEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          440 DDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIR------------EI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~-~~~~-~~~~~~------------~~---v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      +|+|+++-.. -+|+|||+.. .+++ .+.-|.            +.   -..++|+-++.++++|+..+..++|++..|
T Consensus       283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            9999998654 5899999943 3333 222221            12   245789999999999999999999997655


Q ss_pred             eE
Q 009614          503 QL  504 (531)
Q Consensus       503 ~l  504 (531)
                      ..
T Consensus       362 sk  363 (433)
T KOG1354|consen  362 SK  363 (433)
T ss_pred             cc
Confidence            43

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.76  E-value=2e-06  Score=79.44  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCC-e-EEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGID-R-CLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-~-~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-  464 (531)
                      +.++++++++ ++++.+....|-.|.+... . .+++.  ...+.-.+..|+. ....||++..||++.|||++..... 
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence            7889999999 8888888889999988643 2 22322  2445567888998 8889999999999999999975432 


Q ss_pred             -----EecCCCCceEEEEEccCCC--EEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          465 -----DYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       465 -----~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                           ....|.+.+..+.|+|.|.  +|...-.-+.+++.|+++++-.+.+.+......+.....|++-.|+
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~  311 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN  311 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence                 2456888999999998663  4555555678999999999888877766555455555668877665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=3.9e-06  Score=86.96  Aligned_cols=190  Identities=9%  Similarity=0.081  Sum_probs=115.9

Q ss_pred             cceeeeCCCCe-EEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCC--cEEEE
Q 009614          239 GSATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDG--TVRVW  311 (531)
Q Consensus       239 ~s~~fspdg~~-lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg--~I~iW  311 (531)
                      ....|+|||+. ++..+.   ...|.++|+.++...        .+....+.+....|+|||+.|+.. +.++  .|.++
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            35789999985 554333   356888887654432        122345556678899999877643 3333  45555


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      ++.++..                                                               ..+..+.+..
T Consensus       263 dl~~g~~---------------------------------------------------------------~~LT~~~~~d  279 (419)
T PRK04043        263 DTNTKTL---------------------------------------------------------------TQITNYPGID  279 (419)
T ss_pred             ECCCCcE---------------------------------------------------------------EEcccCCCcc
Confidence            5544321                                                               1111112222


Q ss_pred             eEEEEcCCC-eEEEEe-CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---------CeEEEEeC
Q 009614          392 LDLSWSKNG-FLLSSS-ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---------GKVRIWEV  458 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s-~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---------g~I~Iwd~  458 (531)
                      ....|+|+| .|+..+ ..+  .|.++|+.+++..+.......  ...|+| ++++|+..+..         ..|.+.|+
T Consensus       280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence            344799999 555444 333  588888888777554432222  248999 88888776643         36888899


Q ss_pred             CCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCe
Q 009614          459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQ  503 (531)
Q Consensus       459 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~  503 (531)
                      .++....+.... ......|+|||+.|+..+..+   .+.+.++....
T Consensus       357 ~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        357 NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence            888766555432 334588999999887766533   36677776543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=1.9e-08  Score=100.72  Aligned_cols=174  Identities=17%  Similarity=0.285  Sum_probs=127.5

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      +.+.||+..|..++--.+.+-+++++.|++|++|.++...--         ..                           
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~~---------------------------  772 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------IG---------------------------  772 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------cc---------------------------
Confidence            457899999999887777888999999999999998542210         00                           


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEE
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS  433 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~s  433 (531)
                                         ......+++.|+.+|.++.|-.+. ++++  -|+-|.+||.--++.+....   ..+.+..
T Consensus       773 -------------------tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~  831 (1034)
T KOG4190|consen  773 -------------------TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGN  831 (1034)
T ss_pred             -------------------cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCce
Confidence                               011245677899999999998876 5544  47899999987777665432   2233333


Q ss_pred             EEEee-CCCCEEEEE-eCCCeEEEEeCCCCeEEE------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          434 VAFNP-VDDNYFISG-SIDGKVRIWEVRRCQVVD------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       434 v~fsp-~d~~~l~sg-s~Dg~I~Iwd~~~~~~~~------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      |.--| ++..++++| +...+|+++|.+.+....      ..+.+..+.+++..|.|+++++|-..|.|.+.|.++|+.+
T Consensus       832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence            33333 244555555 778999999999876542      2445567899999999999999999999999999999987


Q ss_pred             EEe
Q 009614          506 QQN  508 (531)
Q Consensus       506 ~~~  508 (531)
                      ..+
T Consensus       912 Nsw  914 (1034)
T KOG4190|consen  912 NSW  914 (1034)
T ss_pred             ccC
Confidence            644

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=8.5e-08  Score=98.83  Aligned_cols=171  Identities=18%  Similarity=0.265  Sum_probs=129.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      .....|++|+....++|.||.||.+++..+.+...-........ +..                                
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa-~sn--------------------------------   60 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA-ASN--------------------------------   60 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc-ccc--------------------------------
Confidence            35688999999999999999999999998866432111100000 000                                


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe---ecCCceEEEEEeeC
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV  439 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~---~h~~~V~sv~fsp~  439 (531)
                                    -..-+++.||.+.|..+.|+.+. .|-++..+|.|.+|-+-.+......   +.++.|.+++|+. 
T Consensus        61 --------------LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-  125 (1189)
T KOG2041|consen   61 --------------LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-  125 (1189)
T ss_pred             --------------cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-
Confidence                          01245689999999999999988 8999999999999999887765443   2567899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      +|..++..-.||.|.+=.+...++..-.-.......+.|++|.+.++.+-..|.+++||.+.+
T Consensus       126 dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  126 DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc
Confidence            999999999999998877776665522112223457899999999999999999999998754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.67  E-value=6.5e-06  Score=92.92  Aligned_cols=248  Identities=14%  Similarity=0.189  Sum_probs=151.2

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEE----eCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVH----PVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vw----d~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      +.+.++.+-++...++.+..+|.|.+.    +......+        ..-.-...|.+++||||+..|+.+..+++|.+.
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--------~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--------IVGSVDSGILAASWSPDEELLALVTGEGNLLLM  147 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--------EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence            556677888899999999999999999    33322222        122235789999999999999999999998887


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEE--EeCCccccccCcceeEeecCCC
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      . .+...+.+.........        ....+.++++.+...    +.|+......  .-++....   .....+. +..
T Consensus       148 t-~~fd~i~E~~l~~~~~~--------~~~~VsVGWGkKeTQ----F~Gs~gK~aa~~~~~p~~~~---~d~~~~s-~dd  210 (928)
T PF04762_consen  148 T-RDFDPISEVPLDSDDFG--------ESKHVSVGWGKKETQ----FHGSAGKAAARQLRDPTVPK---VDEGKLS-WDD  210 (928)
T ss_pred             e-ccceEEEEeecCccccC--------CCceeeeccCcccCc----cCcchhhhhhhhccCCCCCc---cccCccc-cCC
Confidence            4 34444433332222111        112222222222111    1111111100  00000000   0011122 444


Q ss_pred             CeeEEEEcCCC-eEEEEeC---C---CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC---CCeEEEEeC
Q 009614          390 EVLDLSWSKNG-FLLSSSA---D---KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV  458 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~---D---g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~---Dg~I~Iwd~  458 (531)
                      .-..|+|..|| ++++.+.   .   ..+|||+-+ |....+-. -.+--.+++|-| .|++||+.-.   ...|.+|..
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence            66789999999 8877764   2   579999875 55443333 233346789999 9999998764   345777765


Q ss_pred             CCCeEEE----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          459 RRCQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       459 ~~~~~~~----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ..-+--.    +......|..+.|++|+..|++...|. |.+|-..+.+...+..+.
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~  344 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR  344 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE
Confidence            5433222    224556899999999999999977655 999999998866555443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=9.2e-08  Score=91.06  Aligned_cols=125  Identities=12%  Similarity=0.252  Sum_probs=100.8

Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC-----eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~-----~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ..+.|.++.|...+ ++..|+..|.|..+|++++     .+...+-|...|++++.-..++++|++.+.+|+|++||++.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            45678888888766 9999999999999999864     57778889999999987665788999999999999999997


Q ss_pred             CeE---E-EecCCCCceEEE--EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          461 CQV---V-DYTDIREIVSAV--CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       461 ~~~---~-~~~~~~~~v~~v--~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      -+.   + .+.+|-..-.-+  -..+....+++++.|-..|||.+..++++.+++..
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            654   3 567775543333  33455667888999999999999999999887754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.65  E-value=5.9e-07  Score=85.66  Aligned_cols=76  Identities=18%  Similarity=0.377  Sum_probs=68.6

Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      |.+.+++++|.| ....+.+|..|..|.+||+-..+  .....+|...|..+++.+--+.+++++.||.|.+|+++..+
T Consensus       196 h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  196 HTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             cccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            889999999999 88999999999999999997654  45688999999999999999999999999999999997544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=4.9e-07  Score=88.94  Aligned_cols=246  Identities=17%  Similarity=0.149  Sum_probs=166.4

Q ss_pred             eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcccCccccc
Q 009614          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDG  321 (531)
Q Consensus       243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~  321 (531)
                      +..-.+++.+++.||.++.|.-....    .......+..|-+.|.+++.+-+|.++.|.+. |..++++|+.+-..+..
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~is----GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm   91 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSRIS----GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM   91 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCCcc----ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence            33455788999999999999765311    11222346789999999999999999999888 99999999987765544


Q ss_pred             eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-
Q 009614          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-  400 (531)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-  400 (531)
                      ++.... +..+.|.......+..+           .+..-.++.+.+++...-.  .+....-.-|..+|.++.+++.+ 
T Consensus        92 iKL~~l-Pg~a~wv~skGd~~s~I-----------AVs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   92 IKLVDL-PGFAEWVTSKGDKISLI-----------AVSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             cccccC-CCceEEecCCCCeeeeE-----------EeecccCCCcEEECCcCCc--CccceecccccCceEEEEeecccc
Confidence            433222 22222222222111111           1222334445555543321  11223334599999999999998 


Q ss_pred             eEEEEeCCCcEEEEECCC------CeEEEEe----------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          401 FLLSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~------~~~l~~~----------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      .+++....|.|..|....      ......+          ..+...+++.|+| ++..+.+-+.|.+|++++..+++++
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence            888888899999998863      1111111          1456789999999 9999999999999999999988744


Q ss_pred             Eec---------------------------------CCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          465 DYT---------------------------------DIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       465 ~~~---------------------------------~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      ...                                 .|. ..-+.++|...|++|+-|+.=| |++.++.++.....+
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            210                                 011 1246678889999999998776 899999998876543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=2.6e-06  Score=86.01  Aligned_cols=112  Identities=13%  Similarity=0.345  Sum_probs=76.6

Q ss_pred             CCCeeEEEEcCCC-eEEEEe---CCCcEEEEECCCC-e---EEEEeecCCceEEEEEeeCCCCEEEEEe---CCCeEEEE
Q 009614          388 SSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGID-R---CLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIW  456 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s---~Dg~V~lwdl~~~-~---~l~~~~h~~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iw  456 (531)
                      ...|...+|-|.| .+++-+   ...++.+|.+.+. .   .+..+ .....+.|.|+| .|++++.+.   ..|.+..+
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSP-KGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence            3567888999999 444333   2467899988742 1   22233 235678899999 899888754   46889999


Q ss_pred             eCCCC--eEEEecCCCCceEEEEEccCCCEEEEEeCCC------cEEEEeCCCC
Q 009614          457 EVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFYDIKDN  502 (531)
Q Consensus       457 d~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg------~I~iwd~~~~  502 (531)
                      |+...  +.+....| ...+.+.|.|.|+|+++++.-+      --+||+.+..
T Consensus       523 D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  523 DTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             ecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            99853  33333333 3567899999999999988743      3577777643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.58  E-value=1.1e-05  Score=80.95  Aligned_cols=235  Identities=15%  Similarity=0.170  Sum_probs=150.3

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC----------
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG----------  306 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg----------  306 (531)
                      .+..++++|.|.+|++.... .|.+|......+. .      .+. | ..|..+.|+|.++||.+-+.-+          
T Consensus        34 p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l-~------~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKL-V------RFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             chhheeecCcchheehhhcc-ceEEccccchhhe-e------eee-c-CCceecccCcccceeeeeccCCccChhhccCC
Confidence            34457999999999988664 4889987644321 1      121 3 4689999999999999976543          


Q ss_pred             -----cEEEEEcccCccccceecCCCC--Ce-eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          307 -----TVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       307 -----~I~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                           .+.+||+.++..+..+......  .. .+.|+.+..-.                ... ....++++.. .-++..
T Consensus       104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~----------------ARv-v~~sl~i~e~-t~n~~~  165 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYV----------------ARV-VGSSLYIHEI-TDNIEE  165 (561)
T ss_pred             ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhh----------------hhh-ccCeEEEEec-CCcccc
Confidence                 4899999999988777655443  22 22232222110                000 1112333332 222223


Q ss_pred             cceeEeecCCCCeeEEEEcCCC---eEEE-----EeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe-
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-  448 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~---~l~s-----~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs-  448 (531)
                      .+.+.+.  ...|....|+|.+   .|+.     .+.++++++|.+..+..+.+-. ....-..+.|++ .+++++.-- 
T Consensus       166 ~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~  242 (561)
T COG5354         166 HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVM  242 (561)
T ss_pred             Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEE
Confidence            3333333  4678899999974   4443     4678899999999777766543 222234577888 677665421 


Q ss_pred             ----------CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEE--eCCCcEEEEeCCCC
Q 009614          449 ----------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDN  502 (531)
Q Consensus       449 ----------~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg--s~dg~I~iwd~~~~  502 (531)
                                ....++|+++....+-...+..++|...+|.|+++.+++.  -..-.+.++|++.+
T Consensus       243 t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         243 THTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence                      1246888888855544333778999999999988776654  46788999999876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.58  E-value=2.7e-05  Score=89.54  Aligned_cols=221  Identities=10%  Similarity=0.083  Sum_probs=132.0

Q ss_pred             cceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEE------cccCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 009614          239 GSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF------LAHEGSILTMKFSLDGQYLASGG-EDGTVRV  310 (531)
Q Consensus       239 ~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l------~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~i  310 (531)
                      ..+++++. +.++++-+..++|++++...............-+      .++-.....|+++++++.|+.+. .++.|++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            34788875 6677777888999999976432110000000000      01122357899999888766654 4567888


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      +|+.++. +..+......               ...           ..++..+.               ...    -..
T Consensus       651 id~~~~~-V~tlag~G~~---------------g~~-----------~~gg~~~~---------------~~~----ln~  684 (1057)
T PLN02919        651 IDFVNET-VRTLAGNGTK---------------GSD-----------YQGGKKGT---------------SQV----LNS  684 (1057)
T ss_pred             EecCCCE-EEEEeccCcc---------------cCC-----------CCCChhhh---------------Hhh----cCC
Confidence            8876543 1111110000               000           00000000               000    112


Q ss_pred             eeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee---------------cCCceEEEEEeeCCCC-EEEEEeCCCe
Q 009614          391 VLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVDDN-YFISGSIDGK  452 (531)
Q Consensus       391 I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------------h~~~V~sv~fsp~d~~-~l~sgs~Dg~  452 (531)
                      ...++++| ++ ++++.+.++.|++||..++.......               .-...+.|+++| +++ ++++.+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCe
Confidence            35789999 45 66777788999999998775432111               012456799999 776 6666677899


Q ss_pred             EEEEeCCCCeEEEecC----------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          453 VRIWEVRRCQVVDYTD----------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       453 I~Iwd~~~~~~~~~~~----------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      |++||+.++......+                      .-.....++++++|.++++-..+++|++||..++.+..
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            9999998765321110                      01134689999999988888899999999999887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.58  E-value=1.1e-05  Score=80.03  Aligned_cols=171  Identities=11%  Similarity=0.167  Sum_probs=131.6

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcccCccccceec
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~I~iWd~~~~~~~~~~~~  324 (531)
                      +|.+++.-+. |+..|.+......         .-.+|.+.|.-..+..++.-++.|..|| .+-|+|..+++       
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~---------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------  393 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYS---------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------  393 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCee---------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------
Confidence            5667776655 5555554432211         1236788898888888888899999998 89999987765       


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~  403 (531)
                                                                              +..+...-+.|..+..+++| +++
T Consensus       394 --------------------------------------------------------~kr~e~~lg~I~av~vs~dGK~~v  417 (668)
T COG4946         394 --------------------------------------------------------VKRIEKDLGNIEAVKVSPDGKKVV  417 (668)
T ss_pred             --------------------------------------------------------EEEeeCCccceEEEEEcCCCcEEE
Confidence                                                                    23344566789999999999 788


Q ss_pred             EEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCC----eEEEEeCCCCeEEEecCCCCceEEEEE
Q 009614          404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY  478 (531)
Q Consensus       404 s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg----~I~Iwd~~~~~~~~~~~~~~~v~~v~~  478 (531)
                      .+.....|.+.|+.++.....-. ..+-|+.+.||| ++++||-+--+|    .|+++|+.++++.........-.+-+|
T Consensus       418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF  496 (668)
T COG4946         418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF  496 (668)
T ss_pred             EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence            88888889999999988654433 557799999999 999999876655    699999999999987776666677899


Q ss_pred             ccCCCEEEEEeC
Q 009614          479 CPDGKGGIVGTM  490 (531)
Q Consensus       479 spdg~~l~sgs~  490 (531)
                      .|||++|.--+.
T Consensus       497 D~d~ryLYfLs~  508 (668)
T COG4946         497 DPDGRYLYFLSA  508 (668)
T ss_pred             CCCCcEEEEEec
Confidence            999998876543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.57  E-value=1.4e-05  Score=90.24  Aligned_cols=252  Identities=17%  Similarity=0.221  Sum_probs=151.3

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCC-------------Cc-ccc-------cccccc---------------
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-------------QS-REL-------SSLYTG---------------  277 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~-------------~~-~~~-------~~~~~~---------------  277 (531)
                      ....+.+++||||+.++|..+.+++|.+-...=             +. +.+       .+.+.+               
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            445777899999999999999999888753210             00 000       000000               


Q ss_pred             -----eEEcccCCCEEEEEEccCCCEEEEEeC---C---CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeee
Q 009614          278 -----QEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID  346 (531)
Q Consensus       278 -----~~l~~H~~~I~~l~fspdg~~Lasgs~---D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (531)
                           ..+. +...-..|+|-.||.|+|+.+-   .   ..|+||+-. |.....-....+-..++.|.|.+  .+++..
T Consensus       199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG--~lIA~~  274 (928)
T PF04762_consen  199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG--NLIASS  274 (928)
T ss_pred             CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC--CEEEEE
Confidence                 0111 3345567899999999999874   3   579999864 54333322222223344444443  222221


Q ss_pred             ccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--E
Q 009614          347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--R  423 (531)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l--~  423 (531)
                      ..           ......+++|.....+..+ ....+......|..|.|++++ .|+....|. |.+|-..+....  +
T Consensus       275 q~-----------~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq  341 (928)
T PF04762_consen  275 QR-----------LPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ  341 (928)
T ss_pred             EE-----------cCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence            11           1222345555444332211 111122345678999999999 776666554 999998876532  2


Q ss_pred             Ee--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC----CC---------e-------EEE----------------
Q 009614          424 VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RC---------Q-------VVD----------------  465 (531)
Q Consensus       424 ~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~----~~---------~-------~~~----------------  465 (531)
                      .+  .....+..+.|+|.+...|...+.+|.+.+++..    .+         .       .+.                
T Consensus       342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~  421 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY  421 (928)
T ss_pred             EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence            22  2344566699999878888888887777665532    11         1       111                


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      .......|.+++|++++..+++-..||.|.+|.....
T Consensus       422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            1223567999999999988999999999999986543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.56  E-value=7.8e-05  Score=75.63  Aligned_cols=231  Identities=14%  Similarity=0.188  Sum_probs=127.2

Q ss_pred             CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcccC-cccc---ceecCCCC
Q 009614          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH-ERLD---GFDVQDTD  328 (531)
Q Consensus       257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~I~iWd~~~~-~~~~---~~~~~~~~  328 (531)
                      +.|.+|+++.....+..   .+.+. -......|+++|++++|+++..    +|.|..|.+... ..+.   ........
T Consensus        13 ~gI~~~~~d~~~g~l~~---~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTL---VQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS   88 (345)
T ss_dssp             TEEEEEEEETTTTEEEE---EEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred             CcEEEEEEcCCCCCceE---eeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence            78999988544433332   12221 2345667899999999999876    578999998764 2222   22211122


Q ss_pred             CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe----------ecCCCCeeEEEEcC
Q 009614          329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF----------QGHSSEVLDLSWSK  398 (531)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~I~~l~~sp  398 (531)
                      +..+.+.++. ..++.....              .+.+.+++...-.........+          ........++.++|
T Consensus        89 p~~i~~~~~g-~~l~vany~--------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p  153 (345)
T PF10282_consen   89 PCHIAVDPDG-RFLYVANYG--------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP  153 (345)
T ss_dssp             EEEEEECTTS-SEEEEEETT--------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred             cEEEEEecCC-CEEEEEEcc--------------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence            2222222222 222222222              2223222222100000111111          01234578899999


Q ss_pred             CC-eEEEE-eCCCcEEEEECCCCe--EEE--Ee--ecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCC--CCeEE--E
Q 009614          399 NG-FLLSS-SADKTVRLWQVGIDR--CLR--VF--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVR--RCQVV--D  465 (531)
Q Consensus       399 ~~-~l~s~-s~Dg~V~lwdl~~~~--~l~--~~--~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~--~~~~~--~  465 (531)
                      ++ ++++. -....|.+|++....  ...  .+  ........+.|+| +++++++. -.++.|.++++.  ++...  .
T Consensus       154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            98 55544 345679999997654  322  22  3556678999999 88776554 567889999998  44332  1


Q ss_pred             ---ec--CC--CCceEEEEEccCCCEEEEEe-CCCcEEEEeC--CCCeEEEE
Q 009614          466 ---YT--DI--REIVSAVCYCPDGKGGIVGT-MTGNCRFYDI--KDNQLYQQ  507 (531)
Q Consensus       466 ---~~--~~--~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~--~~~~l~~~  507 (531)
                         ..  +.  ......|+++|||++|+++. ..+.|.+|++  .++++...
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~  284 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV  284 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence               11  11  12578999999999987766 4677999999  34555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.56  E-value=4.4e-07  Score=94.10  Aligned_cols=234  Identities=17%  Similarity=0.196  Sum_probs=152.3

Q ss_pred             CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcccCcccc-ce
Q 009614          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLD-GF  322 (531)
Q Consensus       245 pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~-~~  322 (531)
                      |--.+-++......-.||++.........    -.+.||..+|+.+.|+|+. ..|++++.|-.|+.||+.+..... ..
T Consensus        79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIe----f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~  154 (1081)
T KOG0309|consen   79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIE----FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST  154 (1081)
T ss_pred             CCCceeEEecCcchhhhhhhhcCCccceE----EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee
Confidence            34445556666677778988754433222    2477999999999999954 589999999999999997755321 11


Q ss_pred             ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--
Q 009614          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--  400 (531)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--  400 (531)
                      ..-......+.|.....                ..+..+....+.+|+.+..   ..|++.+++|...|+.+.|..--  
T Consensus       155 ~~w~s~asqVkwnyk~p----------------~vlasshg~~i~vwd~r~g---s~pl~s~K~~vs~vn~~~fnr~~~s  215 (1081)
T KOG0309|consen  155 SSWRSAASQVKWNYKDP----------------NVLASSHGNDIFVWDLRKG---STPLCSLKGHVSSVNSIDFNRFKYS  215 (1081)
T ss_pred             ecccccCceeeecccCc----------------chhhhccCCceEEEeccCC---CcceEEecccceeeehHHHhhhhhh
Confidence            11111111222211111                1123344455677776543   46789999999999999998754  


Q ss_pred             eEEEEeCCCcEEEEECCCC--eEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCC---------C-e-EEEe
Q 009614          401 FLLSSSADKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR---------C-Q-VVDY  466 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~--~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~---------~-~-~~~~  466 (531)
                      .+.++++|++|+.||....  ...++...+.+|+.-++-|....+.+--. .+..|.+++.++         + + +..+
T Consensus       216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  216 EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             hhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence            8999999999999998753  34455557778888888884333333221 222444444332         2 2 3358


Q ss_pred             cCCCCceEEEEEccCC----------CEEEEEeCCCcEEEEeCCC
Q 009614          467 TDIREIVSAVCYCPDG----------KGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg----------~~l~sgs~dg~I~iwd~~~  501 (531)
                      .+|.+.|...-|...+          -.|++=+.|.++++|-+.+
T Consensus       296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            8898888776665422          2689999999999998864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.55  E-value=7.6e-05  Score=71.83  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=134.8

Q ss_pred             eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEc-cCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs-pdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ..|.+ ++.++++-...+.|..|+........        +.  ......+++. +++ .|+.+...+ +.++|+.+++.
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~--~~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~   72 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------ID--LPGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV   72 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EE--SSSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Ee--cCCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcE
Confidence            57887 77777777778999999987654332        11  1227778888 565 455555544 55558776642


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ec-CCCCeeEEEE
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QG-HSSEVLDLSW  396 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~I~~l~~  396 (531)
                      .....                                                           .. .. .....+++++
T Consensus        73 ~~~~~-----------------------------------------------------------~~~~~~~~~~~ND~~v   93 (246)
T PF08450_consen   73 TVLAD-----------------------------------------------------------LPDGGVPFNRPNDVAV   93 (246)
T ss_dssp             EEEEE-----------------------------------------------------------EETTCSCTEEEEEEEE
T ss_pred             EEEee-----------------------------------------------------------ccCCCcccCCCceEEE
Confidence            11110                                                           00 11 2345789999


Q ss_pred             cCCC-eEEEEeCC--------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE-EEeCCCeEEEEeCCC--CeEE
Q 009614          397 SKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRR--CQVV  464 (531)
Q Consensus       397 sp~~-~l~s~s~D--------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~-sgs~Dg~I~Iwd~~~--~~~~  464 (531)
                      .|+| +.++....        +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..+++..  .++.
T Consensus        94 d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~  171 (246)
T PF08450_consen   94 DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELS  171 (246)
T ss_dssp             -TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred             cCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEecccccccee
Confidence            9999 44444433        457777777 66555555566789999999 887654 667788999999863  2121


Q ss_pred             ------EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          465 ------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       465 ------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                            .........-.+++..+|++.++....+.|.+++.. |+++..+.+.        ...+|+++|.
T Consensus       172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--------~~~~t~~~fg  233 (246)
T PF08450_consen  172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--------VPRPTNCAFG  233 (246)
T ss_dssp             EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--------SSSEEEEEEE
T ss_pred             eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--------CCCEEEEEEE
Confidence                  122223347889999999988888889999999988 8888766543        2467888884

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=2.8e-08  Score=104.54  Aligned_cols=198  Identities=18%  Similarity=0.293  Sum_probs=138.0

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--  306 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--  306 (531)
                      +++.-+.....|++|+-+.++|+.|+..|.|+++++..+..+-+       ..+|..+|+-+.=+.||..+++.+.-.  
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s-------~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES-------VNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc-------ccccccccccccccCCcceeeeeccccCc
Confidence            34444555667899999999999999999999999997776543       678999999999999999777765432  


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      -..+|++.+-.                                                             .+.+.|. 
T Consensus      1168 lsaLW~~~s~~-------------------------------------------------------------~~~Hsf~- 1185 (1516)
T KOG1832|consen 1168 LSALWDASSTG-------------------------------------------------------------GPRHSFD- 1185 (1516)
T ss_pred             hHHHhcccccc-------------------------------------------------------------Ccccccc-
Confidence            46678764311                                                             1122222 


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-e----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                         .-.++.|+... .-+.|+....+.+||++++.++.++ .    .+..-++..|+| +..+++   .||  .+||++.
T Consensus      1186 ---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1186 ---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred             ---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe---eCc--eeeeecc
Confidence               22356666654 3344444467899999999887774 2    223347889999 777665   355  4899998


Q ss_pred             CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .+.++..+.-..-..-.|+|.|..++.-+.     |||+++-++++..+
T Consensus      1257 ~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred             HHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence            876643322223334569999999998875     99999988876544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.54  E-value=4.7e-05  Score=73.66  Aligned_cols=246  Identities=17%  Similarity=0.231  Sum_probs=149.5

Q ss_pred             cceeeeC-CCCeEEeeecCCe-EEEEeCCCCcccc-cccccceEEcccCCCEEEEEEccCCCEEEEEe-----CCCcEEE
Q 009614          239 GSATLKP-GDHELTLGQRMRR-VRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-----EDGTVRV  310 (531)
Q Consensus       239 ~s~~fsp-dg~~lasgs~dg~-I~vwd~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-----~Dg~I~i  310 (531)
                      ..++.+| ....++.+-..|+ ..+||...+.... ......+.|.||.      .|++||++|++.=     ..|.|-|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEE
Confidence            3578888 4555666777665 6778887655431 1223344567774      8999999999863     3589999


Q ss_pred             EEcc-cCccccceecCCCCCeeEEEeecCCcceeeeeccccc--cccccccccCCCceEEEeCCccccccCcceeEe--e
Q 009614          311 WKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK--IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--Q  385 (531)
Q Consensus       311 Wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  385 (531)
                      ||.. +.+.+.++..+.-.+.-+.+.++....+++..--...  ....+.-..+-+..+...+.....+.++  ..+  .
T Consensus        82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~Lp~~  159 (305)
T PF07433_consen   82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VELPPD  159 (305)
T ss_pred             EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eecCcc
Confidence            9998 6677778887777777777777765555543311111  0111111222233344443333333222  123  4


Q ss_pred             cCCCCeeEEEEcCCCeEEEEeC-CC-------cEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEE-Ee
Q 009614          386 GHSSEVLDLSWSKNGFLLSSSA-DK-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS-GS  448 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~~l~s~s~-Dg-------~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~s-gs  448 (531)
                      .|.-.|..|++.++|.++.+.. .+       .|-+++.  ++.+..+.        ..+++-+|++++ ++.++++ +=
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsP  236 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSP  236 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECC
Confidence            4778899999999995555542 22       1334433  33333332        568999999999 7776655 44


Q ss_pred             CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .-+.+.+||..+++++......+ +..++-.+++ ++++.+ .|.+...+
T Consensus       237 rGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG-~G~~~~~~  283 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSG-QGQLIRLS  283 (305)
T ss_pred             CCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCC-CccEEEcc
Confidence            67899999999999986554443 4556666666 444444 45544333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=2.4e-07  Score=61.32  Aligned_cols=36  Identities=47%  Similarity=0.860  Sum_probs=34.0

Q ss_pred             ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .+++.+|.+.|++|+|+|++++|++|+.|++|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            457899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.48  E-value=3.5e-05  Score=76.68  Aligned_cols=121  Identities=11%  Similarity=0.151  Sum_probs=101.1

Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCC-cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg-~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      +|.+.|.-..+..++ -++.|..|| .+-|+|.++++..+....-+.|.++..+| ++++++++.....|.+.|+.++.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence            455667666666666 788888898 89999999998877777788999999999 999999999999999999999987


Q ss_pred             EEecC-CCCceEEEEEccCCCEEEEEeCCC----cEEEEeCCCCeEEEE
Q 009614          464 VDYTD-IREIVSAVCYCPDGKGGIVGTMTG----NCRFYDIKDNQLYQQ  507 (531)
Q Consensus       464 ~~~~~-~~~~v~~v~~spdg~~l~sgs~dg----~I~iwd~~~~~l~~~  507 (531)
                      ..... ..+.|+.+.|||+++++|-+--+|    .|++||+.+++....
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            65433 346799999999999999987766    589999999887653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.45  E-value=2.6e-06  Score=78.44  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=79.3

Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (531)
Q Consensus       390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-  464 (531)
                      .|.+++-+|..  .+++|+.||.+-+||.+.......+  .|+..++-|-|+|.++..|.+++.||.+..||..+.-+- 
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i  260 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSI  260 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEe
Confidence            48899999976  8889999999999999987444333  399999999999999999999999999999998852211 


Q ss_pred             E--ecCC-----CCceEE--------------E-EEccCCCEEEEEeCCCcEEEEe
Q 009614          465 D--YTDI-----REIVSA--------------V-CYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       465 ~--~~~~-----~~~v~~--------------v-~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .  ...+     .+++.+              | .|.--|..|++|+.-+.|++++
T Consensus       261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            0  0000     011111              1 2333567788888888888775

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.44  E-value=6.5e-07  Score=100.96  Aligned_cols=165  Identities=20%  Similarity=0.314  Sum_probs=127.9

Q ss_pred             EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccc
Q 009614          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (531)
                      ++.|-..|.+|.=+|...+.+||+.||.|++|....++.+..+..                                   
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt----------------------------------- 2248 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT----------------------------------- 2248 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-----------------------------------
Confidence            444567788898899999999999999999999866653322110                                   


Q ss_pred             cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEe
Q 009614          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN  437 (531)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fs  437 (531)
                                               .| +..|+.+.|+.+| .+..+-.||.+.+|.+.. ++.... .|+...+...|-
T Consensus      2249 -------------------------~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2249 -------------------------AG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred             -------------------------cC-cchhhhhhhcccCCceeeeccCCceeecccCC-cceeccccCCccccceeee
Confidence                                     11 2567888888888 888899999999999873 333333 388888888885


Q ss_pred             eCCCCEEEEEe---CCCeEEEEeCCCC---eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          438 PVDDNYFISGS---IDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       438 p~d~~~l~sgs---~Dg~I~Iwd~~~~---~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      -   ..+++++   .++.+.+||..-.   .++. ..|.+.+++++|.|..++|++|+.+|.|++||++..++++.++.
T Consensus      2302 ~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2302 G---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             e---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence            3   5666654   5689999997542   2334 78999999999999999999999999999999999888877764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=0.00072  Score=65.67  Aligned_cols=247  Identities=13%  Similarity=0.193  Sum_probs=145.5

Q ss_pred             ceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEccc
Q 009614          240 SATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIE  315 (531)
Q Consensus       240 s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~  315 (531)
                      =++|+|++++|.++-.   .|.|..|.+....-.+..+. .+.+.++  +-+.++++++|++|+++.. -|.|.++-++.
T Consensus        44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~  120 (346)
T COG2706          44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-RQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQA  120 (346)
T ss_pred             eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee-ccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence            3789999988877654   57888888875433232211 1223332  2378999999999999875 58899999866


Q ss_pred             Cccccce-e--cCCCC----------CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          316 HERLDGF-D--VQDTD----------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       316 ~~~~~~~-~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      ...+... .  .+...          +....+.+.. ..++..+....              .+.+|+.....+......
T Consensus       121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~D--------------ri~~y~~~dg~L~~~~~~  185 (346)
T COG2706         121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTD--------------RIFLYDLDDGKLTPADPA  185 (346)
T ss_pred             CCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCc--------------eEEEEEcccCcccccccc
Confidence            3322211 1  11111          1111222221 12222222221              233333332222111112


Q ss_pred             EeecCCCCeeEEEEcCCC-eE-EEEeCCCcEEEEECCCC-e---EEEEe-------ecCCceEEEEEeeCCCCEEEEEeC
Q 009614          383 EFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGID-R---CLRVF-------SHNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~-~---~l~~~-------~h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      .+ .....-..|.|+|++ +. +.+--+++|.+|..... .   .++.+       ........|..+| ++++|+++..
T Consensus       186 ~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR  263 (346)
T COG2706         186 EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR  263 (346)
T ss_pred             cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence            22 345567899999999 33 34556899999998763 2   22222       1456678899999 9999988753


Q ss_pred             -CCeEEEEeCCC--CeEE--E-ecCCCCceEEEEEccCCCEEEEEeCCC-cEEEEeC--CCCeEEE
Q 009614          450 -DGKVRIWEVRR--CQVV--D-YTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDI--KDNQLYQ  506 (531)
Q Consensus       450 -Dg~I~Iwd~~~--~~~~--~-~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~--~~~~l~~  506 (531)
                       ...|.+|.+..  +++.  . ...+........++|+|++|+++..++ +|.+|..  .+|++-.
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence             34788887754  3322  2 333344478899999999999988754 5888865  4566543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=4.4e-06  Score=88.91  Aligned_cols=181  Identities=17%  Similarity=0.259  Sum_probs=135.5

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      ++..++.|+-...+..+|+.+....       +...-..+.|.-|..  ++++|.+|...|+|.+-|..+.+        
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~--------  208 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE--------  208 (1118)
T ss_pred             CCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc--------
Confidence            5566777777778888888754432       112222334666655  57899999999999998876543        


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEE
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS  405 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~  405 (531)
                                                                            .++++..|++.|.++..+.+ +|++|
T Consensus       209 ------------------------------------------------------~iht~~aHs~siSDfDv~GN-lLitC  233 (1118)
T KOG1275|consen  209 ------------------------------------------------------TIHTFDAHSGSISDFDVQGN-LLITC  233 (1118)
T ss_pred             ------------------------------------------------------eeeeeeccccceeeeeccCC-eEEEe
Confidence                                                                  36778889999998887543 77777


Q ss_pred             eC---------CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe---CCCCe--EEEecCCCC
Q 009614          406 SA---------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE---VRRCQ--VVDYTDIRE  471 (531)
Q Consensus       406 s~---------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd---~~~~~--~~~~~~~~~  471 (531)
                      +.         |.-|+|||++..+.+..+.......-+.|+|.-...+++++..|...+-|   +.+..  +........
T Consensus       234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s  313 (1118)
T KOG1275|consen  234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS  313 (1118)
T ss_pred             ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence            64         56699999999888777764444477889997778899999999999999   44332  223444455


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .+.+++++++|+.++.|..+|.|.+|.
T Consensus       314 ~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  314 GISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeEEecCCCceEEEecccCcEeeec
Confidence            699999999999999999999999997

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=0.00021  Score=69.35  Aligned_cols=182  Identities=15%  Similarity=0.249  Sum_probs=126.2

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---CcEEEEEccc--CccccceecCCCCCe
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLDGFDVQDTDPS  330 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~--~~~~~~~~~~~~~~~  330 (531)
                      ++-|++|++.+....++...    +..+.+.++-|+|+|+++.|.++..+   |.|..|.+..  |... .+        
T Consensus        15 s~gI~v~~ld~~~g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~l--------   81 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FL--------   81 (346)
T ss_pred             CCceEEEEEeCcccccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Ee--------
Confidence            57799999986665554332    34577889999999999999998655   5555555432  1110 00        


Q ss_pred             eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe-CC
Q 009614          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-AD  408 (531)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s-~D  408 (531)
                                                             +          .....  ..+.+.+++++++ +++++. .-
T Consensus        82 ---------------------------------------n----------~~~~~--g~~p~yvsvd~~g~~vf~AnY~~  110 (346)
T COG2706          82 ---------------------------------------N----------RQTLP--GSPPCYVSVDEDGRFVFVANYHS  110 (346)
T ss_pred             ---------------------------------------e----------ccccC--CCCCeEEEECCCCCEEEEEEccC
Confidence                                                   0          00111  1223788899999 655554 56


Q ss_pred             CcEEEEECCC-CeE---EEEeecCCc----------eEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEEE----ecCC
Q 009614          409 KTVRLWQVGI-DRC---LRVFSHNNY----------VTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD----YTDI  469 (531)
Q Consensus       409 g~V~lwdl~~-~~~---l~~~~h~~~----------V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~~----~~~~  469 (531)
                      |.|.++-++. |..   +....|.+.          +.+..+.| ++++|++... --+|.+|++..+++..    ....
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence            8899999865 332   334446555          88999999 9999988764 2479999999876542    2345


Q ss_pred             CCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCC
Q 009614          470 REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDN  502 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~  502 (531)
                      ......|.|+|++++..+.+. +++|-+|..+..
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            567889999999999877665 889999998873

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=5.6e-06  Score=86.63  Aligned_cols=257  Identities=12%  Similarity=0.072  Sum_probs=146.3

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEEcccCccccce
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGF  322 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg-~~Lasgs~Dg~I~iWd~~~~~~~~~~  322 (531)
                      .-++|++...|+|.+||........       .+..|.++|..++|-+   +. ..|+.-..-.+|.+|+..+|+.....
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~-------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVIN-------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhh-------hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            3467888899999999998544332       3677899999999976   33 35666666789999999999987776


Q ss_pred             ecCCCCCeeEEEeecCCcceeeeecccccccc-------------ccccc------------------------------
Q 009614          323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK-------------TKSLR------------------------------  359 (531)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~------------------------------  359 (531)
                      ........|+.+.+-....++.....+.....             ...+.                              
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            65555555555444433333322211111000             00000                              


Q ss_pred             ---------cCCCceEEEeCCccc--cc-cCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCC-----
Q 009614          360 ---------KSSDLTCVVLPPKVF--RL-LEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID-----  419 (531)
Q Consensus       360 ---------~~~~~~~~~~~~~~~--~~-~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~-----  419 (531)
                               .-.+...+.++...+  ++ .+.++....-..+.+.-+.|.|+.   .|++...||.+.+|-.+..     
T Consensus       232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~  311 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK  311 (1062)
T ss_pred             HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence                     000001111111111  11 022333334445566677788876   8899999999999975531     


Q ss_pred             -----------eEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---------------------
Q 009614          420 -----------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---------------------  465 (531)
Q Consensus       420 -----------~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---------------------  465 (531)
                                 .....+.  .+..+......|.....++.--.+|.+.+|.+.+++...                     
T Consensus       312 ~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~  391 (1062)
T KOG1912|consen  312 KPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL  391 (1062)
T ss_pred             ccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee
Confidence                       1111111  122233334455445556666667888999988654110                     


Q ss_pred             -----------ecCCCCceEEEEEcc-----------CC-------CEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          466 -----------YTDIREIVSAVCYCP-----------DG-------KGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       466 -----------~~~~~~~v~~v~~sp-----------dg-------~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                                 -..|....++....|           .|       .++++|+..|+|.++|+.++.+...+.+
T Consensus       392 v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv  465 (1062)
T KOG1912|consen  392 VGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV  465 (1062)
T ss_pred             hhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc
Confidence                       012333333333332           22       3678999999999999999887665554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=1.3e-05  Score=84.01  Aligned_cols=205  Identities=16%  Similarity=0.219  Sum_probs=145.7

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC------------CEEEEEeCCC
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG------------QYLASGGEDG  306 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg------------~~Lasgs~Dg  306 (531)
                      +++.|+|.| ++|-|+. ..|.|-|..       .+...|.+.-|+..|+.|.|.|-.            -+||++.-.|
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            356788876 5566654 567777766       455566788899999999997721            2577788889


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      .|.+||...+..                                                              +..+..
T Consensus        90 rIil~d~~~~s~--------------------------------------------------------------~~~l~~  107 (1062)
T KOG1912|consen   90 RIILVDFVLASV--------------------------------------------------------------INWLSH  107 (1062)
T ss_pred             cEEEEEehhhhh--------------------------------------------------------------hhhhcC
Confidence            999999865542                                                              233455


Q ss_pred             CCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          387 HSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       387 h~~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      |..++.+++|-+..     .|++-....+|.+|+..+|+.+..+. ......|+.+.|.|.+.|..-+..|.|-+-+.-.
T Consensus       108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence            67778888887632     67777778899999999999988876 3455677999999999888888889888877542


Q ss_pred             -------CeEEE-ecCCCC------------c-------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          461 -------CQVVD-YTDIRE------------I-------------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       461 -------~~~~~-~~~~~~------------~-------------v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                             ++.+. ..+|.+            .             ...++|+|.-+-++....-..+.|+|++-...+..
T Consensus       188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~v  267 (1062)
T KOG1912|consen  188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAV  267 (1062)
T ss_pred             CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEE
Confidence                   22222 122211            0             12356788777677777777899999988777777


Q ss_pred             eeeeecc
Q 009614          508 NQICLQG  514 (531)
Q Consensus       508 ~~~~~~~  514 (531)
                      ..++-.+
T Consensus       268 vpier~~  274 (1062)
T KOG1912|consen  268 VPIERGG  274 (1062)
T ss_pred             EEeccCC
Confidence            7665433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=6.5e-05  Score=77.92  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=75.9

Q ss_pred             CCeeEEEEcCCC-eE-EEEeCC--CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCC
Q 009614          389 SEVLDLSWSKNG-FL-LSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRC  461 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l-~s~s~D--g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~  461 (531)
                      +......|+|+| .| ++.+.+  ..|.++|+.++...+...+........|+| |++.|+-.+. .+  .|.++|+.++
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence            344556799999 44 444433  568888988887555444444445668999 8887766553 23  6888899888


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCeEE
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKDNQLY  505 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~~~~l~  505 (531)
                      +...+......  ...|+|||++|+.....         ..|.+.|+.++...
T Consensus       312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~  362 (419)
T PRK04043        312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR  362 (419)
T ss_pred             CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence            76544322222  24899999998877654         26888898887653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.33  E-value=0.00015  Score=74.52  Aligned_cols=236  Identities=16%  Similarity=0.130  Sum_probs=131.0

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      ++..+++++.++.+..+|..+++......     +   .+.+.+.-.. .+..++.++.+|.|..||..+++.+..+...
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~-----~---~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAK-----L---SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeec-----c---CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence            46677888889999999987665433211     1   1122211111 3456777888999999999999876655433


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC-cceeEeecCC-----CCe-eEEEEcC
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHS-----SEV-LDLSWSK  398 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~-----~~I-~~l~~sp  398 (531)
                      .....   ... ....+. .  + .     ..+.+..++.+..++.......- .......+..     ..+ ....+ .
T Consensus       175 ~~~~~---~~~-~~sp~~-~--~-~-----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~  240 (377)
T TIGR03300       175 TPALT---LRG-SASPVI-A--D-G-----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-D  240 (377)
T ss_pred             CCcee---ecC-CCCCEE-E--C-C-----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-E
Confidence            21100   000 000000 0  0 0     01122223334333332211100 0000000000     000 01111 1


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCC-ceEEE
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIRE-IVSAV  476 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~-~v~~v  476 (531)
                      ++.++.++.++.+..||..+++.+........ .....   .+..++.++.||.|..+|..+++.+- ...... .....
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            34788888899999999999988776653221 22222   45678888899999999999998763 212111 11222


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       477 ~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ..  .+..|++++.+|.|+++|..+++++.+.++
T Consensus       317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            22  466899999999999999999999987764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.32  E-value=5.9e-06  Score=76.15  Aligned_cols=216  Identities=13%  Similarity=0.130  Sum_probs=120.7

Q ss_pred             EcccCC-CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614          280 FLAHEG-SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (531)
Q Consensus       280 l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      +.+|.+ .|+.+.++.+. .|+++..++.+......++.+...............+. .+ ....+  ............
T Consensus        31 i~~~~d~~~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~-sep~p--~~~~s~~~t~V~  105 (319)
T KOG4714|consen   31 IMQHADVKLSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KN-SEIDP--NDACTMTDNRVC  105 (319)
T ss_pred             cccccceEEEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeee-cc-CCCCC--cccccccCCceE
Confidence            344443 36666666443 67788788877777665554433322211111111111 00 00000  000011223335


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeC------CCcEEEEECCCCeEEEEe-ecCCce
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSA------DKTVRLWQVGIDRCLRVF-SHNNYV  431 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~------Dg~V~lwdl~~~~~l~~~-~h~~~V  431 (531)
                      .+..++...+++.+....   ..+....-...-.+.++...+.++.+..      -+..+.|+++..+.+..- .....|
T Consensus       106 ~~~~dg~~~v~s~~~~~~---~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v  182 (319)
T KOG4714|consen  106 IGYADGSLAVFSTDKDLA---LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV  182 (319)
T ss_pred             ecCCCceEEEEechHHHh---hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence            566677666666544111   0111111111122233333443333322      234556665543322211 133459


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCe
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      ++++-+|...+++++|+.||.+-+||.+.....  .+..|+..++.+-|+| ++..|++++.||.+.-||..+.-
T Consensus       183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~  257 (319)
T KOG4714|consen  183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF  257 (319)
T ss_pred             hhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence            999999977888999999999999999987544  3788999999999999 56889999999999999998643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.31  E-value=1.9e-06  Score=56.89  Aligned_cols=37  Identities=46%  Similarity=0.934  Sum_probs=34.6

Q ss_pred             cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEE
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ  415 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwd  415 (531)
                      +++.++.+|.+.|.+|+|+|++ +|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3578899999999999999998 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=4.2e-06  Score=80.00  Aligned_cols=156  Identities=15%  Similarity=0.245  Sum_probs=108.7

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (531)
                      |..+++| .+..|-+-++.++...        .|. .++.|.++.|...++++..|..+|.|...|++....-       
T Consensus       225 gyhfs~G-~sqqv~L~nvetg~~q--------sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG-------  287 (425)
T KOG2695|consen  225 GYHFSVG-LSQQVLLTNVETGHQQ--------SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG-------  287 (425)
T ss_pred             eeeeccc-ccceeEEEEeeccccc--------ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC-------
Confidence            3343344 4566777777654321        233 5678999999998999999999999999999765210       


Q ss_pred             CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC-CC-eEEE
Q 009614          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLS  404 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp-~~-~l~s  404 (531)
                       ...                                                 +.+ -.-|...|+++.... ++ +|++
T Consensus       288 -~~~-------------------------------------------------~a~-rlyh~Ssvtslq~Lq~s~q~Lma  316 (425)
T KOG2695|consen  288 -NGW-------------------------------------------------CAQ-RLYHDSSVTSLQILQFSQQKLMA  316 (425)
T ss_pred             -CCc-------------------------------------------------ceE-EEEcCcchhhhhhhccccceEee
Confidence             000                                                 011 123778888888776 44 9999


Q ss_pred             EeCCCcEEEEECCCCeE---EEEee-cCCceEE--EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC
Q 009614          405 SSADKTVRLWQVGIDRC---LRVFS-HNNYVTS--VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (531)
Q Consensus       405 ~s~Dg~V~lwdl~~~~~---l~~~~-h~~~V~s--v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~  471 (531)
                      .+++|+|++||++.-++   +..+. |-+.-.-  +-.+| ....+++++.|...|||.++.++++.......
T Consensus       317 S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  317 SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            99999999999997777   66654 4332222  23345 56788889999999999999999886544433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.27  E-value=0.002  Score=64.65  Aligned_cols=86  Identities=10%  Similarity=0.044  Sum_probs=56.9

Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEeCCCCe-----EEEecC--------CCCceEEEEEccCCCEEEEEeC----------C
Q 009614          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTD--------IREIVSAVCYCPDGKGGIVGTM----------T  491 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-----~~~~~~--------~~~~v~~v~~spdg~~l~sgs~----------d  491 (531)
                      .|.+.++.++..... |+|.+.|+....     ......        ....+.-++++|+++.+++...          .
T Consensus       200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~  278 (352)
T TIGR02658       200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS  278 (352)
T ss_pred             ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence            445546777666555 999999965532     222111        1233455999999999888532          2


Q ss_pred             CcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          492 GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       492 g~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +.|.++|+.+++.+..+...         ..+.+|+|+|
T Consensus       279 ~~V~ViD~~t~kvi~~i~vG---------~~~~~iavS~  308 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIELG---------HEIDSINVSQ  308 (352)
T ss_pred             CEEEEEECCCCeEEEEEeCC---------CceeeEEECC
Confidence            47999999999998876642         4556666654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.27  E-value=4.3e-06  Score=86.97  Aligned_cols=202  Identities=15%  Similarity=0.211  Sum_probs=129.9

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC--CCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (531)
                      .+++.++..+|.|+-+|.++.-|. .+-|+...-....+-.+  .-.+....|.+........+.....+.. ...+..+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence            467888999999999999988774 44555432211111111  1112223333333333222222222111 1111222


Q ss_pred             CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCC-eEEEEee-cCCceEEEEEe
Q 009614          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFN  437 (531)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~-~~l~~~~-h~~~V~sv~fs  437 (531)
                      .+.              ..-..+.+|...|+++.|+|+.  .|++++.|-.|..||+++. .++..+. -....+.|+|+
T Consensus       102 s~~--------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn  167 (1081)
T KOG0309|consen  102 SSN--------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN  167 (1081)
T ss_pred             Ccc--------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence            222              2244578899999999999988  9999999999999999874 3455543 34456789999


Q ss_pred             eCCCCEEEEEeCCCeEEEEeCCCCeE-E-EecCCCCceEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 009614          438 PVDDNYFISGSIDGKVRIWEVRRCQV-V-DYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       438 p~d~~~l~sgs~Dg~I~Iwd~~~~~~-~-~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~~~  502 (531)
                      -.+++.+|+ +....|++||++.+.- + ...+|...|+.+.|..- -..+.+.+.||+|++||....
T Consensus       168 yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  168 YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            867776665 4567899999998743 3 46778888888888652 345788999999999998654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.25  E-value=0.00022  Score=67.95  Aligned_cols=217  Identities=13%  Similarity=0.085  Sum_probs=121.7

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (531)
                      +|.|..+|..+++.....     .+..-.....+. ..+++.++++++.++.|..||..+|+.+.............   
T Consensus         2 ~g~l~~~d~~tG~~~W~~-----~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~---   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSY-----DLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP---   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEE-----ECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE---
T ss_pred             CCEEEEEECCCCCEEEEE-----ECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee---
Confidence            577888888765544321     111101222221 23356678888899999999999999877666532211110   


Q ss_pred             ecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecC----C-CCeeEEEEcCCCeEEEEeCCC
Q 009614          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGH----S-SEVLDLSWSKNGFLLSSSADK  409 (531)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h----~-~~I~~l~~sp~~~l~s~s~Dg  409 (531)
                      ......+               +....++.++.++.....    .+... ...    . .......+. .+.++.+..++
T Consensus        73 ~~~~~~v---------------~v~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  132 (238)
T PF13360_consen   73 VVDGGRV---------------YVGTSDGSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSG  132 (238)
T ss_dssp             EEETTEE---------------EEEETTSEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCS
T ss_pred             eeccccc---------------ccccceeeeEecccCCcc----eeeeeccccccccccccccCceEe-cCEEEEEeccC
Confidence            0001111               111122244444433221    12221 111    1 111222222 33888888899


Q ss_pred             cEEEEECCCCeEEEEeecCC-c----------e-EEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCeEEEecCCCCceEEE
Q 009614          410 TVRLWQVGIDRCLRVFSHNN-Y----------V-TSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIREIVSAV  476 (531)
Q Consensus       410 ~V~lwdl~~~~~l~~~~h~~-~----------V-~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~~~~~~~~~~~v~~v  476 (531)
                      .|..+|+.+|+.+..+.-.. .          + ..+.+.  ++ .++.++.++. +.+ |+.+++.+ +......+.. 
T Consensus       133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~-  206 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYS-  206 (238)
T ss_dssp             EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECE-
T ss_pred             cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccC-
Confidence            99999999999988775211 1          1 222222  34 7777777775 555 99999976 4333233322 


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       477 ~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ...+++..|++++.++.|..||+.+|+.+.+
T Consensus       207 ~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  207 LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            1456778888888999999999999998754

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=2e-05  Score=83.28  Aligned_cols=72  Identities=21%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      .+++|+|..-.|+.|-.-|.+.+|........       .....|+.+|..+.||++|..|+|+..=|.|.+|......
T Consensus        63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             hhhccChHHHHHhhccccceeEEEecCCceee-------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            35899999999999999999999988754321       1234599999999999999999999999999999876433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.00016  Score=76.53  Aligned_cols=177  Identities=15%  Similarity=0.260  Sum_probs=121.2

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+.|.++  .+++++.|+..|.|++.+......         +...|...      ..+|.+++||+.||+|.|-.+.+.
T Consensus        41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~~---------~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNPK---------TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             HHHHHHh--hcceeeeccccceEEEEecCCccc---------cccccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence            3334444  467899999999999998874321         12334443      668999999999999999887665


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      +....+.                                                               -..++.++++
T Consensus       104 ~~~~~~d---------------------------------------------------------------f~rpiksial  120 (846)
T KOG2066|consen  104 DEITQYD---------------------------------------------------------------FKRPIKSIAL  120 (846)
T ss_pred             ccceeEe---------------------------------------------------------------cCCcceeEEe
Confidence            5322211                                                               2346788888


Q ss_pred             cCC------CeEEEEeCCCcEEEEECC---CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          397 SKN------GFLLSSSADKTVRLWQVG---IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       397 sp~------~~l~s~s~Dg~V~lwdl~---~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      +|+      +.+++|+..| +.++.-+   ....+..-...++|.++.|   .++++|-++.+| |+|||+.+.+.+...
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeecc
Confidence            887      2899999988 7777543   2222222236789999999   568888887665 999999998877532


Q ss_pred             CCC-C------ceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          468 DIR-E------IVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       468 ~~~-~------~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ... .      -...+.|.++.+ |+.|- ..+|+|..++
T Consensus       196 ~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  196 PPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK  233 (846)
T ss_pred             CCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence            221 1      245678887654 55554 4468888887

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=4.4e-05  Score=78.56  Aligned_cols=91  Identities=16%  Similarity=0.330  Sum_probs=72.6

Q ss_pred             EEEEECCCCeEE----EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614          411 VRLWQVGIDRCL----RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       411 V~lwdl~~~~~l----~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~  486 (531)
                      -.+|++..++..    ..+..+..|.|++++| +...|+.|+.||.|.+||...+... .....-.++.++|+|+|..++
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEE
Confidence            346666544322    2334889999999999 9999999999999999999877433 334556789999999999999


Q ss_pred             EEeCCCcEEEEeCCCCe
Q 009614          487 VGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       487 sgs~dg~I~iwd~~~~~  503 (531)
                      +|+..|.+.+||+.-+-
T Consensus       316 V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  316 VGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCceEEEEEeecCc
Confidence            99999999999986443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.12  E-value=0.00053  Score=63.80  Aligned_cols=227  Identities=11%  Similarity=-0.005  Sum_probs=126.1

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcccCccccceec
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      ...+||.|+..|...+|...+....+.      ....|...|+-+.=..+ ..-+..++.|.++++.++..+........
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~  156 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLY------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN  156 (344)
T ss_pred             cccEEEeccccceeeeecccCccccee------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence            345788999999999998875443221      11223333322221112 22467788999999998865543332222


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEe--CCccccccCccee-EeecCCCCeeEEEEcCCC-
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL--PPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG-  400 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~h~~~I~~l~~sp~~-  400 (531)
                      +.-....+.+..+..  +.+              ..+....+..|  +.....    .+. ........-.+..|+... 
T Consensus       157 ~~~~~ns~~~snd~~--~~~--------------~Vgds~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~~~  216 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPS--WGS--------------SVGDSRRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSENDL  216 (344)
T ss_pred             cccceeeeEEcCCCc--eEE--------------EecCCCcceEEEeCCccce----eeeeEecccCCCceeeeeccCcc
Confidence            211112222222211  111              11111112222  111111    111 122234455678898888 


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEe------ecCCceEEEEEeeCCCC--EEEEEeCCCeEEEEeCCCCeEEE-------
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVD-------  465 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~------~h~~~V~sv~fsp~d~~--~l~sgs~Dg~I~Iwd~~~~~~~~-------  465 (531)
                      .+|++..||++.|||++.......+      .|++.+..+.|+| .+.  +|...-.-+.+.+-|+++.+-..       
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d  295 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD  295 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence            9999999999999999865433322      2899999999997 432  44444445789999999875332       


Q ss_pred             -ecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          466 -YTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       466 -~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                       ...|. ..|...+|+.++..+.+.+.+. +.=|++.
T Consensus       296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  296 VERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             ccccccccccccccccCCCcccccccchh-hheeecc
Confidence             12222 3477888888887776666542 4445544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.12  E-value=2.4e-05  Score=73.88  Aligned_cols=168  Identities=21%  Similarity=0.441  Sum_probs=112.6

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc-c----ccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-R----LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      ...|++|.|...|.||++|...|.|.++.-.... +    ...++.+....                             
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF-----------------------------   76 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF-----------------------------   76 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccch-----------------------------
Confidence            4579999999999999999999999999754322 0    00011100000                             


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCe---------------
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR---------------  420 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~---------------  420 (531)
                                          ..+..+ .-...|..|.|..++   .++..+.|++|++|.+....               
T Consensus        77 --------------------DYLkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~  135 (460)
T COG5170          77 --------------------DYLKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHS  135 (460)
T ss_pred             --------------------hhhhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccccc
Confidence                                000000 012457788887764   78888999999999885320               


Q ss_pred             ---------------------------EEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC----eEEEec
Q 009614          421 ---------------------------CLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYT  467 (531)
Q Consensus       421 ---------------------------~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~----~~~~~~  467 (531)
                                                 +.+.+  .|+..|.+|.|+. |...++++ .|-.|.+|++.-.    .++...
T Consensus       136 ~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiK  213 (460)
T COG5170         136 PMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIK  213 (460)
T ss_pred             ccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEEEecc
Confidence                                       01112  2777889999998 77777664 6789999998642    345555


Q ss_pred             CCC-----CceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe
Q 009614          468 DIR-----EIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       468 ~~~-----~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      .|.     ..|++..|+|.. ..+.-.+..|.|++-|++...
T Consensus       214 P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         214 PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            543     468999999954 566778889999999998443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.00046  Score=73.69  Aligned_cols=209  Identities=14%  Similarity=0.147  Sum_probs=133.6

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCC-EEEEEEccCCCEEEEEeCCCc-----EEEEEcc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGT-----VRVWKVI  314 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~-----I~iWd~~  314 (531)
                      -++++++..+|.|+.+|.|.+.+-.        +...+.+++|... |..+....+..+|++.+.|+.     |+||++.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4788999999999999999888754        2223457777777 444444444468888887754     8999986


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      ..+..       ..+.|+..                               ..+++           ..+.....++.++
T Consensus       101 k~~~n-------~sP~c~~~-------------------------------~ri~~-----------~~np~~~~p~s~l  131 (933)
T KOG2114|consen  101 KVDKN-------NSPQCLYE-------------------------------HRIFT-----------IKNPTNPSPASSL  131 (933)
T ss_pred             ccCCC-------CCcceeee-------------------------------eeeec-----------cCCCCCCCcceEE
Confidence            54310       00222210                               00000           0011235678888


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECC---C--CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE-E-Ee
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVG---I--DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-V-DY  466 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~---~--~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~-~-~~  466 (531)
                      +++.+- .++.|-.+|.|..+.-.   .  .+.........+||.+++.. ++..++-...-..|.+|.+....+ . ..
T Consensus       132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l  210 (933)
T KOG2114|consen  132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVL  210 (933)
T ss_pred             EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCcceeee
Confidence            888877 88999999999998532   1  11222223568999999987 676522223345799999986552 2 35


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      ..+...+.+..+++....+++++. .-+.+|+....++.-.+
T Consensus       211 d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  211 DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence            666778888888876655666664 45999998866554443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.03  E-value=0.00075  Score=69.36  Aligned_cols=228  Identities=14%  Similarity=0.046  Sum_probs=129.4

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      .+..+.+++.+|.|..+|..+++......     +.+  .......  .++..++.++.+|.+..+|..+|+.+......
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-----~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVD-----LDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeec-----CCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence            46678888888999999987666443211     111  1011112  24667888889999999999999876554432


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe-----eEEEEcCCC
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-----LDLSWSKNG  400 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I-----~~l~~sp~~  400 (531)
                      .........             .     ....+....++.++.++......    +..+......+     ...... ++
T Consensus       135 ~~~~~~p~v-------------~-----~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~~  191 (377)
T TIGR03300       135 SEVLSPPLV-------------A-----NGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-DG  191 (377)
T ss_pred             ceeecCCEE-------------E-----CCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-CC
Confidence            210000000             0     00112223455566665543221    11111111000     011111 34


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCc--------eEEEEEee-CCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE  471 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~--------V~sv~fsp-~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~  471 (531)
                      .++.+..++.+..+|..+++.+........        +..+.-+| ..+..+++++.+|.++.||..+++.+-......
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~  271 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS  271 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence            778888899999999999987765431100        00111111 134578888889999999999998763222221


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                       ....  ..++..+++++.+|.++.+|..+++++.+.
T Consensus       272 -~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       272 -YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             -ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence             1112  235678888889999999999999887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.99  E-value=1.7e-06  Score=88.87  Aligned_cols=191  Identities=18%  Similarity=0.354  Sum_probs=126.0

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEe----CCCcEEEEEcccCcccc
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLD  320 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs----~Dg~I~iWd~~~~~~~~  320 (531)
                      +...+++|..+|.|.+-..+.....     ......+|....++++|++ |.+.||.|-    .|..+.|||+.++-...
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP  143 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP  143 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence            3457788999999999887754332     1123557888999999998 667777773    36789999997653200


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee-cCCCCeeEEEEcCC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKN  399 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~  399 (531)
                           ...                                                     ..+. +......+++|..+
T Consensus       144 -----ke~-----------------------------------------------------~~fs~~~l~gqns~cwlrd  165 (783)
T KOG1008|consen  144 -----KES-----------------------------------------------------PLFSSSTLDGQNSVCWLRD  165 (783)
T ss_pred             -----ccc-----------------------------------------------------cccccccccCccccccccC
Confidence                 000                                                     0000 11233447888876


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe-CCCCe-EEEecC-----CCC
Q 009614          400 G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ-VVDYTD-----IRE  471 (531)
Q Consensus       400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd-~~~~~-~~~~~~-----~~~  471 (531)
                      . ++++|...+.+.++|++........-....+..+...|..++|+++-. ||.|.+|| .++-+ ++....     ...
T Consensus       166 ~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~  244 (783)
T KOG1008|consen  166 TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPK  244 (783)
T ss_pred             cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccc
Confidence            6 888888888999999984332222223456778888888888998876 99999999 43322 222111     123


Q ss_pred             ceEEEEEccCC--CEEEEEeCCCcEEEEeCC
Q 009614          472 IVSAVCYCPDG--KGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       472 ~v~~v~~spdg--~~l~sgs~dg~I~iwd~~  500 (531)
                      .+..++|+|-.  ...+..-..++|++||+.
T Consensus       245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  245 QLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            58999999954  333344456789999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.97  E-value=0.00072  Score=69.85  Aligned_cols=95  Identities=18%  Similarity=0.294  Sum_probs=74.9

Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe--
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--  462 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--  462 (531)
                      .....|.+.+++|+. .|+.|+.||.|.+||...+..... ...-.++.++||| ++.+|++|+.-|.+.+||+.-..  
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence            467789999999998 999999999999999977754433 4566689999999 99999999999999999986422  


Q ss_pred             ------------EEE---ecCCCCceEEEEEccCC
Q 009614          463 ------------VVD---YTDIREIVSAVCYCPDG  482 (531)
Q Consensus       463 ------------~~~---~~~~~~~v~~v~~spdg  482 (531)
                                  .+.   +..+...+..+.|.+..
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence                        122   33445567778888544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.94  E-value=0.00094  Score=73.98  Aligned_cols=246  Identities=12%  Similarity=0.152  Sum_probs=140.4

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      +.+.++.|..++..++.+...|.|.+-|......+..        ..-...|.+++|+||+..++..+..+++.+-. .+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMT-KD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence            5666788999999999999999999997765443321        22356899999999999999998888776643 22


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ...+..-+....        ....+..+.+.+.....    .+.++..... ..   ......+...... -...=+.|+
T Consensus       140 f~~i~E~~L~~d--------~~~~sk~v~VGwGrkeT----qfrgs~gr~~-~~---~~~~~ek~~~~~~-~~~~~~~Is  202 (1265)
T KOG1920|consen  140 FEPIAEKPLDAD--------DERKSKFVNVGWGRKET----QFRGSEGRQA-AR---QKIEKEKALEQIE-QDDHKTSIS  202 (1265)
T ss_pred             ccchhccccccc--------cccccccceecccccce----eeecchhhhc-cc---ccccccccccchh-hccCCceEE
Confidence            222211111000        00111111111111100    0111110000 00   0000000000001 112235789


Q ss_pred             EcCCC-eEEEEe----CC-CcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe---CCCeEEEEeCCCCe---
Q 009614          396 WSKNG-FLLSSS----AD-KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ---  462 (531)
Q Consensus       396 ~sp~~-~l~s~s----~D-g~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~~~~---  462 (531)
                      |.-+| ++++..    .+ +.|++||-+ +..-.+- ...+.-.+++|-| .|.++++-.   .|+.|.+|....-+   
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence            99999 776632    33 789999987 3322211 1334457899999 888888743   45679998866432   


Q ss_pred             EE-EecCCCCceEEEEEccCCCEEEE---EeCCCcEEEEeCCCCeEEEEee
Q 009614          463 VV-DYTDIREIVSAVCYCPDGKGGIV---GTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       463 ~~-~~~~~~~~v~~v~~spdg~~l~s---gs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .. .+......+..++|+.++..|++   ......|++|-+.+.+...+..
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~  331 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE  331 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE
Confidence            22 23333344999999999999988   4444459999999877654443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.00012  Score=77.62  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=88.8

Q ss_pred             CC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeC----CCCEEEEEeCCCeEEEEeCC---CCeEEEecCCC
Q 009614          399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIR  470 (531)
Q Consensus       399 ~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~----d~~~l~sgs~Dg~I~Iwd~~---~~~~~~~~~~~  470 (531)
                      .| ++++|+.||+|.|-.+-+.+...++...-++.+|+++|.    ..+.+++|+.-| +.++.-+   ....+......
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            46 999999999999999999999998988899999999993    256899999888 7777643   22333566778


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ++|.+++|.  |+++|-++.+| |++||+.+++.+..++.
T Consensus       161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCC
Confidence            899999994  67888888777 99999999888876654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00044  Score=67.77  Aligned_cols=240  Identities=13%  Similarity=0.086  Sum_probs=126.3

Q ss_pred             eeccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEEEE
Q 009614          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVW  311 (531)
Q Consensus       234 ~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iW  311 (531)
                      +-..+..++|+|..+ ++..++.+.+|+|.|+......       +.+..| ..+|+++|.-|. .+|..|-..|.|.||
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccceee-------eheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            344566789999888 7788999999999999854433       335566 789999998865 477888889999999


Q ss_pred             EcccCcccc-ceec--CCCCCeeEEEe-ecC---CcceeeeeccccccccccccccCCCceEEEeCCccccccCccee-E
Q 009614          312 KVIEHERLD-GFDV--QDTDPSCLYFT-INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-E  383 (531)
Q Consensus       312 d~~~~~~~~-~~~~--~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  383 (531)
                      |++..+-.. .+..  ...++..+... ++.   ...+.+.....-   ..+.+..+.+               .+.. .
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l---~f~ei~~s~~---------------~~p~vl  325 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL---QFYEIVFSAE---------------CLPCVL  325 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh---hhhhhhcccc---------------CCCccc
Confidence            997654321 1111  01111111100 000   000000000000   0000000000               1111 1


Q ss_pred             eecCCCCeeEEEEcCCC--eEEEEeCCCc------EE-EEECCCCeEEEEee--c-CCc-----eEEEEEeeCCCCEEEE
Q 009614          384 FQGHSSEVLDLSWSKNG--FLLSSSADKT------VR-LWQVGIDRCLRVFS--H-NNY-----VTSVAFNPVDDNYFIS  446 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~--~l~s~s~Dg~------V~-lwdl~~~~~l~~~~--h-~~~-----V~sv~fsp~d~~~l~s  446 (531)
                      -.+..+...++.+++..  .|++.-.+.+      |- --|-..|..+..-.  + ..+     -+...+.+-+.++++.
T Consensus       326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~  405 (463)
T KOG1645|consen  326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV  405 (463)
T ss_pred             ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence            12234556666666633  4444332211      00 01122232222111  1 110     1112232224455554


Q ss_pred             -EeCCCeEEEEeCCCCeEEEecCCCCceEEEEEcc-CC-CEEEEEeCCCcEEEEeCC
Q 009614          447 -GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DG-KGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       447 -gs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~sp-dg-~~l~sgs~dg~I~iwd~~  500 (531)
                       |..-..+.+||..+.+++.......+|..++... +| .+|++-+ |..++||..+
T Consensus       406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence             4455789999999999998888889999998765 33 3555444 6789998754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=1.3e-05  Score=85.00  Aligned_cols=181  Identities=17%  Similarity=0.217  Sum_probs=126.3

Q ss_pred             ccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccc
Q 009614          271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE  350 (531)
Q Consensus       271 ~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (531)
                      ++.+...+.++.|+..-+|++|+.+.+.|+.|+..|.|+++++.+|...                               
T Consensus      1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e------------------------------- 1136 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME------------------------------- 1136 (1516)
T ss_pred             HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-------------------------------
Confidence            4455556678899999999999999999999999999999999887632                               


Q ss_pred             ccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCC-cEEEEECCC-CeEEEEee
Q 009614          351 KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADK-TVRLWQVGI-DRCLRVFS  426 (531)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg-~V~lwdl~~-~~~l~~~~  426 (531)
                                                     ....+|..+|+-+.-+.+|  .|.+++... ...+|++.. +...+.|.
T Consensus      1137 -------------------------------~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1137 -------------------------------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred             -------------------------------ccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc
Confidence                                           2345688899999888888  444444443 578999864 44555554


Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--e---cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--Y---TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      .   -.++.|+. .-..-+.|+.-..+.|||+.++.++.  +   ......-+.+.|+|+..+++-   ||  .+||++.
T Consensus      1186 e---d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1186 E---DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred             c---cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeecc
Confidence            2   35678877 44444555555689999999987652  1   122223367889999887653   44  3899988


Q ss_pred             CeEEEE---eeeeecccccCCCce
Q 009614          502 NQLYQQ---NQICLQGKKKLPGKR  522 (531)
Q Consensus       502 ~~l~~~---~~~~~~~~kk~~~~~  522 (531)
                      .+.++.   +.+.+.|...+++..
T Consensus      1257 ~~aIh~FD~ft~~~~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGGGGFHPSGNE 1280 (1516)
T ss_pred             HHHHhhhhhheecccccccCCCce
Confidence            766543   445555555555543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=9.7e-05  Score=74.94  Aligned_cols=128  Identities=17%  Similarity=0.275  Sum_probs=94.2

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-----------CCeEEEEeC
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-----------DGKVRIWEV  458 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-----------Dg~I~Iwd~  458 (531)
                      -+-+.|||.| +|++-...| |.+|--.+-..++.|.|++ |.-+.|+| ..+||++-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEc
Confidence            4678999999 888877665 7899877777788888875 78899999 9999998553           257999999


Q ss_pred             CCCeEEEec-C--CCCce-EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          459 RRCQVVDYT-D--IREIV-SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       459 ~~~~~~~~~-~--~~~~v-~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ++|...... .  ....+ .-..||.|++++|.-.. ..|.||+..+-.++....+.+        .-|..+.|+|
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--------~gIr~FswsP  356 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--------SGIRDFSWSP  356 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--------ccccCcccCC
Confidence            999876422 1  12222 33689999999988776 569999998866665444332        3355666666

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.83  E-value=0.0022  Score=60.55  Aligned_cols=191  Identities=13%  Similarity=0.116  Sum_probs=102.3

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCC------CEEEEEeCCCcEEEEEc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDG------QYLASGGEDGTVRVWKV  313 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg------~~Lasgs~Dg~I~iWd~  313 (531)
                      ++|+||+.+||.+...|+|+++|+.....-  .......+. .-..+|-.|.|-+..      ..|+.-...|.++-+-+
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGSELF--VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccceeE--EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            699999999999999999999999753321  111111111 124678888886522      24666677888888876


Q ss_pred             ccC--c---cccceecC---CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          314 IEH--E---RLDGFDVQ---DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       314 ~~~--~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ..+  +   ....+...   ...+.++.+.+.+.-.+++.......                              ..-.
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~------------------------------~~s~  176 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQD------------------------------GMSK  176 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCC------------------------------cccc
Confidence            432  1   12222221   22333334443332221111100000                              0000


Q ss_pred             cCCCCeeEEEEcCCC---eEEEEeCCCc------EEEEECCCCeEEEE-eecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          386 GHSSEVLDLSWSKNG---FLLSSSADKT------VRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~---~l~s~s~Dg~------V~lwdl~~~~~l~~-~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      +....+++-..-.+.   ..++...|+.      -.+|.+-+.+.... ......|..|..+| |+.+||+...+|.|.+
T Consensus       177 a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsL  255 (282)
T PF15492_consen  177 ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSL  255 (282)
T ss_pred             ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEE
Confidence            111222222222221   3333333322      23343332221111 12467899999999 9999999999999999


Q ss_pred             EeCCCCeEE
Q 009614          456 WEVRRCQVV  464 (531)
Q Consensus       456 wd~~~~~~~  464 (531)
                      |++.+-++.
T Consensus       256 W~iPsL~~~  264 (282)
T PF15492_consen  256 WEIPSLRLQ  264 (282)
T ss_pred             EecCcchhh
Confidence            999987655

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.79  E-value=0.0097  Score=57.11  Aligned_cols=108  Identities=18%  Similarity=0.267  Sum_probs=76.0

Q ss_pred             eeEEEEc-CCCeEEEEeCCCcEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeCC--------CeEEE
Q 009614          391 VLDLSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID--------GKVRI  455 (531)
Q Consensus       391 I~~l~~s-p~~~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~D--------g~I~I  455 (531)
                      ...+++. +++.|+.+...+ +.++|..+++......      .....+.+++.| ++++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence            5666777 667777776655 4555999886655443      235678999999 89887776644        56888


Q ss_pred             EeCCCCeEEEecCCCCceEEEEEccCCCEEE-EEeCCCcEEEEeCCC
Q 009614          456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGI-VGTMTGNCRFYDIKD  501 (531)
Q Consensus       456 wd~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~~  501 (531)
                      ++.. +++......-...+.|+|+||++.|+ +-+..+.|..|++..
T Consensus       120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence            8888 66554444456678999999998775 556678899999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.77  E-value=0.0016  Score=66.71  Aligned_cols=245  Identities=13%  Similarity=0.116  Sum_probs=123.1

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccc-----c-------------------------------ccccceEEc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----S-------------------------------SLYTGQEFL  281 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~-----~-------------------------------~~~~~~~l~  281 (531)
                      |.++.|.++...|++|...|.|.||.+...+..-     .                               .+....-+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            4568899999999999999999999765432110     0                               000111245


Q ss_pred             ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC--------CCCeeEEEeecCCcceeeeeccccccc
Q 009614          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD--------TDPSCLYFTINHLSQLIPIDVDKEKID  353 (531)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (531)
                      ...++|++++.|.=| ++|.|..+|.+.|.|++....+..-....        ..+.++.|.        .+........
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~--------vm~~~~D~yS  154 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS--------VMTLGGDGYS  154 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE--------EEE-TTSSSE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE--------EEecCCCccc
Confidence            567999999998555 89999999999999997766554432222        112233332        1122222233


Q ss_pred             cccccccCCCceEEEeCCcc---ccccCcceeEeecCCCCeeEEEEc-C-----------------CC----eEEEEeCC
Q 009614          354 KTKSLRKSSDLTCVVLPPKV---FRLLEKPLHEFQGHSSEVLDLSWS-K-----------------NG----FLLSSSAD  408 (531)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~I~~l~~s-p-----------------~~----~l~s~s~D  408 (531)
                      ....+.++..+.+++|....   ....-........+.+.|..|..- .                 .+    .++....+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence            33344455555555553311   111111122222344555444321 0                 11    24444557


Q ss_pred             CcEEEEECCCCeEEEEee-cCCceEEEEEee----CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-----CCceEEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP----VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-----REIVSAVCY  478 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp----~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~-----~~~v~~v~~  478 (531)
                      ..+|++...+.+..+..- ..-....+++-+    ..+..|++-..+|.|++|.+..-+.+.....     ...+...++
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            789999998877655443 222333444521    1466788889999999999999776632221     123445677


Q ss_pred             ccCCCEEEEEeCC
Q 009614          479 CPDGKGGIVGTMT  491 (531)
Q Consensus       479 spdg~~l~sgs~d  491 (531)
                      +++|..++-.+..
T Consensus       315 s~~Gdi~~~~gps  327 (395)
T PF08596_consen  315 SRNGDIFYWTGPS  327 (395)
T ss_dssp             -TTS-EEEE-SSS
T ss_pred             CCCCCEEEEeCcc
Confidence            8999877666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.77  E-value=0.0013  Score=62.70  Aligned_cols=111  Identities=18%  Similarity=0.200  Sum_probs=79.9

Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC---CCc
Q 009614          398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI---REI  472 (531)
Q Consensus       398 p~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~---~~~  472 (531)
                      .++.+++++.++.|..||..+++.+..+.....+......  .+..++.++.++.|+.+|..+++++-.  ...   ...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            4457888889999999999999998888644332222222  456677777888999999999988732  211   112


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ........++..++++..+|.|+.+|+++|+++.+.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            23334444588899999999999999999999887765

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.75  E-value=0.0095  Score=61.62  Aligned_cols=236  Identities=8%  Similarity=0.070  Sum_probs=126.3

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEE-EEEccCCCEEEEEeCCCcEEEEEcccCccccceec
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      .+..++.++.+|.+..+|..+++.......     .   +.+.+ ...  .+..++.+..+|.|..+|..+|+.+..+..
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-----~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV-----A---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccC-----C---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            345667777889999999887765443211     1   11111 111  234667778899999999999987766643


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC-cceeEeec-CC-CCeeEEEEcC---
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQG-HS-SEVLDLSWSK---  398 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-h~-~~I~~l~~sp---  398 (531)
                      .......   . .....++.   .      ...+....++.++.++.......- ..+....+ +. .....+..+|   
T Consensus       189 ~~~~~~~---~-~~~sP~v~---~------~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~  255 (394)
T PRK11138        189 DVPSLTL---R-GESAPATA---F------GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV  255 (394)
T ss_pred             CCCcccc---c-CCCCCEEE---C------CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence            2110000   0 00000000   0      001112222333322222111000 00000000 00 0000111112   


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCC-CceEEE
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR-EIVSAV  476 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~-~~v~~v  476 (531)
                      ++.++.++.++.+..+|..+++.+........ ..+..   .+..++.++.+|.|..+|..+++.+- ..... ....+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            44777788899999999999988766543221 12222   45677788899999999999987652 21111 111222


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       477 ~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ..  .+.+|++++.+|.+++.|..+|+++.+.++
T Consensus       332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            22  245788899999999999999999887765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.71  E-value=0.00033  Score=75.17  Aligned_cols=144  Identities=17%  Similarity=0.244  Sum_probs=103.7

Q ss_pred             eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---------CCcEEEEE
Q 009614          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVWK  312 (531)
Q Consensus       242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~I~iWd  312 (531)
                      -...+++++.+|...|+|.+.|.+       .+...+++.+|++.|.++..  .|+.|++||.         |.-|+|||
T Consensus       182 imR~Nnr~lf~G~t~G~V~LrD~~-------s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD  252 (1118)
T KOG1275|consen  182 IMRYNNRNLFCGDTRGTVFLRDPN-------SFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD  252 (1118)
T ss_pred             EEEecCcEEEeecccceEEeecCC-------cCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence            455688999999999999999987       55566789999999986655  6899999985         45577888


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      ++..+.+..+..+                                                              .+ ..
T Consensus       253 LRmmral~PI~~~--------------------------------------------------------------~~-P~  269 (1118)
T KOG1275|consen  253 LRMMRALSPIQFP--------------------------------------------------------------YG-PQ  269 (1118)
T ss_pred             hhhhhccCCcccc--------------------------------------------------------------cC-ch
Confidence            7666543332211                                                              11 12


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEEC---CCCe-EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          393 DLSWSKNG--FLLSSSADKTVRLWQV---GIDR-CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       393 ~l~~sp~~--~l~s~s~Dg~V~lwdl---~~~~-~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      -+.|+|.-  .++.++..|...+-|.   .... -+..+. ....+.++++++ +++.++.|..+|.|.+|--
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence            34566654  7788888888888883   2221 112222 445599999999 9999999999999999973

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.68  E-value=0.014  Score=57.42  Aligned_cols=245  Identities=16%  Similarity=0.178  Sum_probs=134.5

Q ss_pred             eeeeCCCCeEEe----------eecCCeEEEEeCCCCcccccccccceEEcc-cC----CCEEEEEEccCCCEEEEEeC-
Q 009614          241 ATLKPGDHELTL----------GQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HE----GSILTMKFSLDGQYLASGGE-  304 (531)
Q Consensus       241 ~~fspdg~~las----------gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~-H~----~~I~~l~fspdg~~Lasgs~-  304 (531)
                      +.++|+++.+.+          |-..-.|.+||..+......     -++.+ |.    ...+.+.++.||++++.... 
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-----I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T  115 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-----IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT  115 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-----EEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-----EecCCcchheecccccceEEccCCcEEEEEccC
Confidence            678999998875          44566799999986532211     01111 11    12234688899998877543 


Q ss_pred             -CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          305 -DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       305 -Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                       --.|.|-|+...+.+.++..    +.|....+.....+..+..++..             ..+.++..--. ..+....
T Consensus       116 Pa~SVtVVDl~~~kvv~ei~~----PGC~~iyP~~~~~F~~lC~DGsl-------------~~v~Ld~~Gk~-~~~~t~~  177 (342)
T PF06433_consen  116 PATSVTVVDLAAKKVVGEIDT----PGCWLIYPSGNRGFSMLCGDGSL-------------LTVTLDADGKE-AQKSTKV  177 (342)
T ss_dssp             SSEEEEEEETTTTEEEEEEEG----TSEEEEEEEETTEEEEEETTSCE-------------EEEEETSTSSE-EEEEEEE
T ss_pred             CCCeEEEEECCCCceeeeecC----CCEEEEEecCCCceEEEecCCce-------------EEEEECCCCCE-eEeeccc
Confidence             45788999988888777765    34555544443333333322221             11111110000 0001111


Q ss_pred             eecCCCCee-EEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--EEee-----------cCCceEEEEEeeCCCCEEEEEe
Q 009614          384 FQGHSSEVL-DLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS-----------HNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       384 ~~~h~~~I~-~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l--~~~~-----------h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      |..-..++. .-++...+ .++--+..|.|+--|+......  ..+.           -++.-.-+++++ ..+.|++.-
T Consensus       178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLM  256 (342)
T PF06433_consen  178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLM  256 (342)
T ss_dssp             SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEE
T ss_pred             cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEe
Confidence            222222222 22344443 6666788888888888765432  2221           112234477887 444444322


Q ss_pred             C---CC-------eEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCeEEEEee
Q 009614          449 I---DG-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVG-TMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       449 ~---Dg-------~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-s~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .   ++       .|.++|+.+++.+........+.+|..+.|.+ +|++. ..++.+.+||..+|+++....
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            1   11       48888999999987666566788999998775 55544 457899999999999988765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.67  E-value=0.023  Score=54.19  Aligned_cols=206  Identities=14%  Similarity=0.147  Sum_probs=111.4

Q ss_pred             eeeeccccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          232 ARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      .+..+.++.++|.|+.. ++++....+.|...+... . .+.    ...+.+ .+-.-+|++..++.++++--.++.+.+
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~-vlr----~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-K-VLR----RIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEE----EEE-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-C-EEE----EEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            33444566799999755 667777888888777642 2 111    112333 356788899888877776656888988


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      .++...........                                         ...+          .+.....++..
T Consensus        91 ~~~~~~~~~~~~~~-----------------------------------------~~~~----------~l~~~~~~N~G  119 (248)
T PF06977_consen   91 FTIDDDTTSLDRAD-----------------------------------------VQKI----------SLGFPNKGNKG  119 (248)
T ss_dssp             EEE----TT--EEE-----------------------------------------EEEE----------E---S---SS-
T ss_pred             EEEeccccccchhh-----------------------------------------ceEE----------ecccccCCCcc
Confidence            88744321100000                                         0000          00111235667


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCC---CeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~---~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      +-.|+|.|.+ .|+.+-...-.+||.+..   ...+....         ....+.+++++|..+.+++.......|.++|
T Consensus       120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence            8999999986 666777777777777654   22222221         3346789999998888888888899999999


Q ss_pred             CCCCeEEEecCCC----------CceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          458 VRRCQVVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       458 ~~~~~~~~~~~~~----------~~v~~v~~spdg~~l~sgs~dg~I~iw  497 (531)
                       .+++++......          ...-.|+|.++|++.++. .-+..++|
T Consensus       200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence             566665422211          246789999999755544 55544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.62  E-value=0.014  Score=59.87  Aligned_cols=152  Identities=20%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc-ceecCCCCCeeEEE-eecCCcceeeeeccccccccccccccCCC
Q 009614          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYF-TINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      .|+.|.|+++..-|+.|...|.|.||.....+... .............+ ..+....+..+..         ....   
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~---------r~~~---   70 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISD---------RAPP---   70 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GG---------G--T---
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehh---------hCCc---
Confidence            58999999998899999999999999987655332 00000000000000 0000111110000         0000   


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEE
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSV  434 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv  434 (531)
                               ..+..-.|...++...++|++++.+.-|+++.|..+|.+.|.|++....+..-.         ....|+++
T Consensus        71 ---------~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i  141 (395)
T PF08596_consen   71 ---------SLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI  141 (395)
T ss_dssp             ---------T-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred             ---------ccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence                     000001345556667899999999988899999999999999999888776632         23468888


Q ss_pred             EEeeC----CC---CEEEEEeCCCeEEEEeC
Q 009614          435 AFNPV----DD---NYFISGSIDGKVRIWEV  458 (531)
Q Consensus       435 ~fsp~----d~---~~l~sgs~Dg~I~Iwd~  458 (531)
                      .|...    |+   -.+++|...|.+.+|.+
T Consensus       142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             EEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence            88631    22   36778888888888865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00039  Score=68.17  Aligned_cols=82  Identities=16%  Similarity=0.266  Sum_probs=73.0

Q ss_pred             eeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ...+.+|...|.+|+++|..  ++..++.+.+|+|.|+++..++..+.....+++++|.-++.++|++|-..|.|.|||+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            33566788899999999976  7899999999999999999999999866999999999977789999999999999999


Q ss_pred             CCCe
Q 009614          459 RRCQ  462 (531)
Q Consensus       459 ~~~~  462 (531)
                      +..+
T Consensus       266 R~~~  269 (463)
T KOG1645|consen  266 RQPE  269 (463)
T ss_pred             cCCC
Confidence            9754

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0043  Score=65.24  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=59.1

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ...++++..++|+|+..|.|.|+.+...... ...+....-+.|...|++++|++++..|++|..-|+|.+-.+.+
T Consensus        81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~-~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPR-DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEEecchhHhhhhhcCCceEEeehhhccCCC-cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            3578999999999999999999998863321 12222222234788999999999999999999999999988876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.57  E-value=0.012  Score=57.22  Aligned_cols=196  Identities=14%  Similarity=0.195  Sum_probs=106.2

Q ss_pred             eeeeCCCCeEEee-----ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-------CC--
Q 009614          241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-------DG--  306 (531)
Q Consensus       241 ~~fspdg~~lasg-----s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-------Dg--  306 (531)
                      ..|++||++|.+.     ...|.|-|||...      .+....++..|.-.-..|.+.|||+.|+.+-.       .|  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~  129 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRA  129 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcC------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCce
Confidence            5899999999874     4468999999983      23344466666666677889999988877631       12  


Q ss_pred             ---------cEEEEEcccCccccceecCC--CCCeeEEEeecCCcceee-eeccccccccccccccCCCceEEEeCCcc-
Q 009614          307 ---------TVRVWKVIEHERLDGFDVQD--TDPSCLYFTINHLSQLIP-IDVDKEKIDKTKSLRKSSDLTCVVLPPKV-  373 (531)
Q Consensus       307 ---------~I~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  373 (531)
                               .+.+.|..+|+.+.......  ...+.-.+.......+.. ..+.......        ...+.++.... 
T Consensus       130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~--------~PLva~~~~g~~  201 (305)
T PF07433_consen  130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA--------PPLVALHRRGGA  201 (305)
T ss_pred             ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc--------CCeEEEEcCCCc
Confidence                     23334445555544433311  112222222222222221 1121111100        01111111111 


Q ss_pred             ccccCcceeEeecCCCCeeEEEEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       374 ~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                      ......+......-.+.|-+|++++++ .+ +|+=.-+.+.+||..++..+....-.+ +..++-.+ ++ ++++.+ .|
T Consensus       202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~-~~-f~~ssG-~G  277 (305)
T PF07433_consen  202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTD-DG-FLVSSG-QG  277 (305)
T ss_pred             ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-eeeeeecC-Cc-eEEeCC-Cc
Confidence            111111111123345678999999998 44 555577889999999999987765333 45566555 33 555544 45


Q ss_pred             eEE
Q 009614          452 KVR  454 (531)
Q Consensus       452 ~I~  454 (531)
                      .+.
T Consensus       278 ~~~  280 (305)
T PF07433_consen  278 QLI  280 (305)
T ss_pred             cEE
Confidence            433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0005  Score=68.31  Aligned_cols=208  Identities=16%  Similarity=0.164  Sum_probs=126.7

Q ss_pred             cCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC---ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccc
Q 009614          283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (531)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (531)
                      |...|+.+.-. -.+++.+++.||.++.|.-..-   +.+..+..+...+..+..+.                ......+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~----------------dg~L~~S   70 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY----------------DGWLFRS   70 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc----------------cceeEee
Confidence            77778876554 4569999999999999975331   11111111111111111110                1111122


Q ss_pred             cC-CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEE-EEeCCCcEEEEECCCCeEEE-Eee--cCCce
Q 009614          360 KS-SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLL-SSSADKTVRLWQVGIDRCLR-VFS--HNNYV  431 (531)
Q Consensus       360 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~-s~s~Dg~V~lwdl~~~~~l~-~~~--h~~~V  431 (531)
                      .. .+....+++...++...-  ..+.--.+.+.. ..+|..   .++ +.-.++.+.++|-....+.. .+.  |..+|
T Consensus        71 v~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV  147 (558)
T KOG0882|consen   71 VEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV  147 (558)
T ss_pred             ccCcccceeEEEeeccchhhh--cccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence            12 244455555444433211  111111222222 223332   333 33467889999987655433 332  99999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCC------CeE----------EEecCCCCceEEEEEccCCCEEEEEeCCCcEE
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRR------CQV----------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~------~~~----------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~  495 (531)
                      .++.++| -+..+++....|.|.-|....      .++          +.+.......+++.|+|+|..+.+-+.|..|+
T Consensus       148 ~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR  226 (558)
T KOG0882|consen  148 KKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR  226 (558)
T ss_pred             EEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence            9999999 888999998899999999873      111          12334456789999999999999999999999


Q ss_pred             EEeCCCCeEEEEeeee
Q 009614          496 FYDIKDNQLYQQNQIC  511 (531)
Q Consensus       496 iwd~~~~~l~~~~~~~  511 (531)
                      ++++++|++++.+.-.
T Consensus       227 ~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  227 GFVFKTGKLVQEIDEV  242 (558)
T ss_pred             EEEeccchhhhhhhcc
Confidence            9999999998877543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.54  E-value=0.053  Score=52.90  Aligned_cols=229  Identities=11%  Similarity=0.078  Sum_probs=121.8

Q ss_pred             eCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccccee
Q 009614          244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (531)
Q Consensus       244 spdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~  323 (531)
                      ...++.|+.|+.+| +.+++.......      .  -..+...|..|...++-+.|++-+ |+.+.++++..........
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~------~--~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKP------T--RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccc------e--eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence            45678899999988 889888221111      1  111333499999999877766654 5999999987655433211


Q ss_pred             ------------cCCCCCeeEEEe--ec-CCcceeeeeccccccccccccccCCCceEEEeCCccccccC-cceeEeecC
Q 009614          324 ------------VQDTDPSCLYFT--IN-HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGH  387 (531)
Q Consensus       324 ------------~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h  387 (531)
                                  .......+..+.  .. ......+             +.......++.|....  ... +..+++. -
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-------------va~kk~i~i~~~~~~~--~~f~~~~ke~~-l  137 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-------------VAVKKKILIYEWNDPR--NSFSKLLKEIS-L  137 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEE-------------EEECCEEEEEEEECCc--ccccceeEEEE-c
Confidence                        001111122222  00 0000111             1111112222332211  111 2334433 3


Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeec-------------CCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-------------NNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h-------------~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      ...+..++|.++ .++.|.. +...+.|+.++.....+..             ..++..+...  ++.+|++-  |..-.
T Consensus       138 p~~~~~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~  211 (275)
T PF00780_consen  138 PDPPSSIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGV  211 (275)
T ss_pred             CCCcEEEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEE
Confidence            478899999944 6666654 4478899997776655531             1233333433  34555542  33333


Q ss_pred             EEeCCCC----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          455 IWEVRRC----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       455 Iwd~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ..|....    ..+.|.   ..+.++++.  ..+|++.+. +.|.||++.++++++.+..
T Consensus       212 fv~~~G~~~r~~~i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  212 FVNKNGEPSRKSTIQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcCCCCcCcccEEEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            3344332    122333   345556663  357777665 5599999999999988763

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00047  Score=71.38  Aligned_cols=81  Identities=20%  Similarity=0.287  Sum_probs=71.0

Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceE-EEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      -...+.-+.|+| .-.+||.+..+|.|-+..+.-.++..+.-+...++ ++||.|||+.||+|-.||+|++.|+.++..+
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            345678899999 88999999999999999999666666665777777 9999999999999999999999999999988


Q ss_pred             EEe
Q 009614          506 QQN  508 (531)
Q Consensus       506 ~~~  508 (531)
                      +..
T Consensus        98 ~~~  100 (665)
T KOG4640|consen   98 VSF  100 (665)
T ss_pred             ecc
Confidence            774

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.44  E-value=0.012  Score=48.03  Aligned_cols=99  Identities=21%  Similarity=0.298  Sum_probs=71.4

Q ss_pred             eeEEEEcC---CC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          391 VLDLSWSK---NG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       391 I~~l~~sp---~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      |++|++..   +|  .|+.|+.|..||+|+  ....+..+.-...|++++-..  ...|+.+-.+|+|-+|+-... +..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence            45555543   44  899999999999996  447788888888899998876  478999999999999987432 223


Q ss_pred             ecCCCCceEEEEEcc-CC---CEEEEEeCCCcEE
Q 009614          466 YTDIREIVSAVCYCP-DG---KGGIVGTMTGNCR  495 (531)
Q Consensus       466 ~~~~~~~v~~v~~sp-dg---~~l~sgs~dg~I~  495 (531)
                      .. .+..++++++.. ++   .-|++|-.+|.|-
T Consensus        77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33 233356665543 32   3689999999874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.42  E-value=0.0056  Score=63.61  Aligned_cols=106  Identities=13%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~  469 (531)
                      .-..++|.+.+.+++-....+|.|+.--+....+.+..+..+..|-.    |.+|+..+.+ .|.+||+.+++++.....
T Consensus        70 ~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v  144 (443)
T PF04053_consen   70 SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDV  144 (443)
T ss_dssp             E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred             ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence            34567888877777777788899963323333334443334444432    6677766554 899999999999876665


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      .. |..|.|+++|.+++..+.+ .+.|++.+..
T Consensus       145 ~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  145 SA-VKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             -E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             CC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            54 8999999999999888855 5777765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.00028  Score=74.95  Aligned_cols=107  Identities=12%  Similarity=0.160  Sum_probs=88.6

Q ss_pred             eEEEEcCCC-eEEEEe----CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614          392 LDLSWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s----~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-  465 (531)
                      +-.+|+|.. +++.++    ..|.|-|| ..+|++.+....+-.+++++|+| ..-.|+.|-.-|.+.+|...+.+... 
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence            345799988 776665    45788888 46777766666666788999999 77788899899999999999887764 


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ...|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            56788999999999999999999999999999875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.37  E-value=0.05  Score=56.39  Aligned_cols=69  Identities=14%  Similarity=0.001  Sum_probs=47.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +....+....++.+.+.+-...+.   ....+++..++.||+|++||.-..+|.+.+.+..-.+.+.++...
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence            445555555556666444332211   223468999999999999999999999999987766666555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.36  E-value=0.0094  Score=63.27  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=78.2

Q ss_pred             cCCC-eEEEEeCCCcEEEEECCC-----CeEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCCeE------
Q 009614          397 SKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV------  463 (531)
Q Consensus       397 sp~~-~l~s~s~Dg~V~lwdl~~-----~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~~~------  463 (531)
                      .++| +...  .++.|.+.|..+     ...+..+.-......|.++| |++++++++ .+.+|.|.|+.+.+.      
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            3456 3333  367899999998     46677777788889999999 888877655 589999999988552      


Q ss_pred             ------EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          464 ------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       464 ------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                            +............+|.++|+...+-..|..|..||+..
T Consensus       362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                  33333344566789999999888899999999999986

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.36  E-value=7e-05  Score=77.28  Aligned_cols=141  Identities=14%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             ecCCCCeeEEEEcCCC--eEEEEe----CCCcEEEEECCCC--eEEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          385 QGHSSEVLDLSWSKNG--FLLSSS----ADKTVRLWQVGID--RCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~--~l~s~s----~Dg~V~lwdl~~~--~~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      .+|....++++|++-.  .|++|-    .|..+.|||+.++  .+....    .......+++|-. +.+++++|.....
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~  177 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS  177 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch
Confidence            4567788999999864  666663    4567999999876  222111    1334556899986 8899999999999


Q ss_pred             EEEEeCCCCeEEEecCCCCceEEEEEcc-CCCEEEEEeCCCcEEEEeCC-C-CeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          453 VRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIK-D-NQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       453 I~Iwd~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~-~-~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      +.++|++........-.+..+..+...| .+.|+++-. ||.|.+||.. . ..+++.+.   . .+++..++++.|+++
T Consensus       178 ~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~---~-~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL---R-NENKKPKQLFALAYC  252 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh---h-CCCCcccceeeEEec
Confidence            9999999543322222333556677778 667776665 9999999952 1 12222211   1 122333589999999


Q ss_pred             eC
Q 009614          530 KI  531 (531)
Q Consensus       530 p~  531 (531)
                      |.
T Consensus       253 Pt  254 (783)
T KOG1008|consen  253 PT  254 (783)
T ss_pred             cC
Confidence            84

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.33  E-value=0.015  Score=64.95  Aligned_cols=209  Identities=16%  Similarity=0.194  Sum_probs=112.7

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCC----cc------------cccccccceEEcccC-------------
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ----SR------------ELSSLYTGQEFLAHE-------------  284 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~----~~------------~~~~~~~~~~l~~H~-------------  284 (531)
                      ..+.|.+++|+||++.++..+..+++.+-...-.    ..            ..........|+|..             
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            3467778999999999999988888877544100    00            000001011122111             


Q ss_pred             --------CCEEEEEEccCCCEEEEEe----CC-CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc
Q 009614          285 --------GSILTMKFSLDGQYLASGG----ED-GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK  351 (531)
Q Consensus       285 --------~~I~~l~fspdg~~Lasgs----~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (531)
                              +.=+.|.|--||+++|+..    .+ +.|+|||.. |.....-........++.|.|.+ ..+.++.     
T Consensus       188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq-----  260 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQ-----  260 (1265)
T ss_pred             cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeee-----
Confidence                    1123589999999998842    23 799999976 44332222233334455555522 2222221     


Q ss_pred             cccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEE---EeCCCcEEEEECCCCeEEE--Ee
Q 009614          352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS---SSADKTVRLWQVGIDRCLR--VF  425 (531)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s---~s~Dg~V~lwdl~~~~~l~--~~  425 (531)
                             ..+.+..++++..+..... .....+......|..++|+.++ .|+.   ......|++|-+.+.....  .+
T Consensus       261 -------~~~sd~~IvffErNGL~hg-~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l  332 (1265)
T KOG1920|consen  261 -------CKTSDSDIVFFERNGLRHG-EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL  332 (1265)
T ss_pred             -------ecCCCCcEEEEecCCcccc-ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence                   2233335666554432211 1111122233448999999998 6655   3444459999987754322  22


Q ss_pred             ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       426 ~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ..+.... +.|+|.....+..-..+|...+++.
T Consensus       333 ~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  333 QFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence            2222222 7888866666666556666666553

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.32  E-value=0.057  Score=50.53  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEE-EEEEccCCCEEEEEeCCCcEEEEEcccCccccceec
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~-~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      -|++++.|...|.+++.+.+++.+-..       +..- +.|. .....+++.++..|+.|++.+..|..+..++.+.+.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~-------f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWN-------FVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheee-------eeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            466799999999999999987654321       1111 1121 123456899999999999999999988887666443

>smart00320 WD40 WD40 repeats

Probab=97.30  E-value=0.00055  Score=43.33  Aligned_cols=35  Identities=40%  Similarity=0.904  Sum_probs=31.7

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      ..+.+|...|+++.|++++.++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35667899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.00087  Score=70.29  Aligned_cols=110  Identities=12%  Similarity=0.159  Sum_probs=85.1

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE---
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---  464 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~---  464 (531)
                      |.--++...+ +++.|+.-|.|.+|+-..++....-.  ....+..+..++ +..++|+|+..|.|.|+.+.....-   
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcce
Confidence            3333444455 99999999999999987776554433  345566677888 8889999999999999998764321   


Q ss_pred             --E--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          465 --D--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       465 --~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                        .  -..|...|++++|++|+..+++|...|+|..-.+.+
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              1  223678899999999999999999999999888876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0015  Score=67.71  Aligned_cols=91  Identities=14%  Similarity=0.269  Sum_probs=76.9

Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceE-EEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~-sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ...|.-+.|+|.- ++|.+..+|.|.+..+. -+.+.++. ++..++ +++|.| ||++||.|-.||+|++-|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            3467789999987 99999999999999887 77778887 777777 999999 9999999999999999999998877


Q ss_pred             Ee--cCCCCceEEEEEcc
Q 009614          465 DY--TDIREIVSAVCYCP  480 (531)
Q Consensus       465 ~~--~~~~~~v~~v~~sp  480 (531)
                      .-  ......|.++-|.|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            53  55566777777763

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.22  E-value=0.03  Score=45.75  Aligned_cols=66  Identities=27%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCC---CEEEEEeCCCeEEE
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD---NYFISGSIDGKVRI  455 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~---~~l~sgs~Dg~I~I  455 (531)
                      ...|+.|.-...+.++.+-.+|+|-+|+-  .+.+...+.+..++++++...++   .-|++|-.+|+|-+
T Consensus        42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   42 TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            45677777777779999999999999975  33344445566688888765332   26899999998754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.16  E-value=0.096  Score=54.13  Aligned_cols=95  Identities=11%  Similarity=0.054  Sum_probs=64.2

Q ss_pred             CeEEEEeCCCcEEEEECCCCeEEEEeec--CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-CCCceEE-
Q 009614          400 GFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSA-  475 (531)
Q Consensus       400 ~~l~s~s~Dg~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~-~~~~v~~-  475 (531)
                      +.++.++.++.|..+|..+++.+.....  .....+...   .+.+++.++.||.|.+.|..+++++.... ....+.+ 
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~  371 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE  371 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC
Confidence            4788888999999999999987654431  111222222   24678888999999999999998874322 2222221 


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeC
Q 009614          476 VCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       476 v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      ..+  .+..|++++.||.|+.+++
T Consensus       372 P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        372 PVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEE--ECCEEEEEeCCceEEEEeC
Confidence            122  3457889999999888764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.14  E-value=0.025  Score=60.15  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=69.6

Q ss_pred             CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe--------------------------------------
Q 009614          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS--------------------------------------  448 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs--------------------------------------  448 (531)
                      ..+.+.+.|..+.+....+.-.....-++++| ++.++++.+                                      
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~  291 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK  291 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence            44667777877776666655444445667777 666665554                                      


Q ss_pred             --CCCeEEEEeCCC-----CeEEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCe
Q 009614          449 --IDGKVRIWEVRR-----CQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQ  503 (531)
Q Consensus       449 --~Dg~I~Iwd~~~-----~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~  503 (531)
                        .+++|.+.|..+     .+++.+.........+.++|||+++++++. +++|.|+|+.+.+
T Consensus       292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             EECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence              235688888887     456667777778899999999999877665 8999999998755

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.028  Score=53.32  Aligned_cols=207  Identities=17%  Similarity=0.205  Sum_probs=117.4

Q ss_pred             eeeeCCCCeEEeeec-----CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE-Ecc
Q 009614          241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW-KVI  314 (531)
Q Consensus       241 ~~fspdg~~lasgs~-----dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW-d~~  314 (531)
                      -.|||||.+|.+.-.     -|.|-|||....-      ...-++..|.-.-..|.|.+||+.|+.+.  |-|..- +..
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~f------qrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfg  190 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGF------QRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFG  190 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEeccccc------ceecccccCCcCcceeEEecCCcEEEEeC--CceecccccC
Confidence            479999999977433     3789999988432      23345777877778899999999988763  445544 221


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      .-+    ++.....++.+.+                                   +....++.++....-..+.-.|..+
T Consensus       191 R~~----lNldsMePSlvll-----------------------------------d~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         191 RTE----LNLDSMEPSLVLL-----------------------------------DAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ccc----cchhhcCccEEEE-----------------------------------eccccchhhhccCchhhhhcceeee
Confidence            111    1111111111111                                   1111111111111111345567778


Q ss_pred             EEcCCCeEEEEeC------CCcEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEE-EeCCCeEEEEeCC
Q 009614          395 SWSKNGFLLSSSA------DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVR  459 (531)
Q Consensus       395 ~~sp~~~l~s~s~------Dg~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~s-gs~Dg~I~Iwd~~  459 (531)
                      +..++|.++.++.      |---.+=-...++.+..+.        ..++|-+|+.+- +..+++. .-..+...|||..
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcC
Confidence            8888885555542      1111222223445554443        457899999997 4445544 4455678899999


Q ss_pred             CCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          460 RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       460 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      ++.++......+.   .-..+...-+++.+.+|.|.+|.
T Consensus       311 tG~vv~~a~l~da---aGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         311 TGAVVSEAALPDA---AGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CCcEEeccccccc---ccceeccCceEEecCCceEEecc
Confidence            9999864433321   11223445677888889998884

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.11  E-value=0.026  Score=58.48  Aligned_cols=110  Identities=21%  Similarity=0.279  Sum_probs=70.9

Q ss_pred             eEEEEcCCC--eEEEEeCCCc--EEEEECCCCeEEEEeecC-CceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeE
Q 009614          392 LDLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQV  463 (531)
Q Consensus       392 ~~l~~sp~~--~l~s~s~Dg~--V~lwdl~~~~~l~~~~h~-~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~  463 (531)
                      ...+|+|+|  ++++...|+.  |.+.|+.+++..+ +.+. +.-+.=.|+| +|++++-.+. .|  .|.++++..+.+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce
Confidence            345799999  5556666766  5666777777444 4433 3334567999 8887776554 44  466777777765


Q ss_pred             EEecCCCCceEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCe
Q 009614          464 VDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQ  503 (531)
Q Consensus       464 ~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~--I~iwd~~~~~  503 (531)
                      ..+......-..-.|+|||++|+..+.. |.  |.++|+.++.
T Consensus       319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            5443333333377899999999887753 44  6777776555

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.02  Score=61.78  Aligned_cols=102  Identities=21%  Similarity=0.370  Sum_probs=73.2

Q ss_pred             eEEEEeCCC-----cEEEEECCC------CeEE---EEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-
Q 009614          401 FLLSSSADK-----TVRLWQVGI------DRCL---RVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-  460 (531)
Q Consensus       401 ~l~s~s~Dg-----~V~lwdl~~------~~~l---~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-  460 (531)
                      .|++-+.|+     .|++|++..      .+++   +.+.     .+.++.+++.+. +-..+|+|-.+|.|..+.-.- 
T Consensus        79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcch
Confidence            777766654     499999863      2344   3333     246788999998 889999999999999885321 


Q ss_pred             ---C-eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          461 ---C-QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       461 ---~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                         + +.........+||.+++..+++.++.+.....|.+|.+....
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence               1 222345567899999999999885555556789999998544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.01  E-value=0.16  Score=50.95  Aligned_cols=175  Identities=18%  Similarity=0.235  Sum_probs=102.0

Q ss_pred             CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEee
Q 009614          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI  336 (531)
Q Consensus       257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~  336 (531)
                      |+|.++++.+.......+.... -....++|++|+-- +|. |+.|. .+.|.+|++...+.+..               
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~---------------  122 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLK---------------  122 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEE---------------
T ss_pred             cEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchh---------------
Confidence            9999999987411111111111 12347889998876 444 44443 47899999876651100               


Q ss_pred             cCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEEC
Q 009614          337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV  416 (531)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl  416 (531)
                                                                  ...+. ....+.++....+ +++.|...+.|.++..
T Consensus       123 --------------------------------------------~~~~~-~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen  123 --------------------------------------------KAFYD-SPFYITSLSVFKN-YILVGDAMKSVSLLRY  156 (321)
T ss_dssp             --------------------------------------------EEEE--BSSSEEEEEEETT-EEEEEESSSSEEEEEE
T ss_pred             --------------------------------------------hheec-ceEEEEEEecccc-EEEEEEcccCEEEEEE
Confidence                                                        11111 2225667766644 8888888888888755


Q ss_pred             CC-CeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-------C--eEE--EecCCCCceEEE---EE
Q 009614          417 GI-DRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------C--QVV--DYTDIREIVSAV---CY  478 (531)
Q Consensus       417 ~~-~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-------~--~~~--~~~~~~~~v~~v---~~  478 (531)
                      +. ...+..+.   ....++++.|-+ +++.++.+..+|.|.++....       +  ++.  ........|+++   ++
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l  235 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL  235 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence            43 33344443   456788999987 557999999999999998763       2  222  344456678877   55


Q ss_pred             cc--CCC------EEEEEeCCCcEEEE
Q 009614          479 CP--DGK------GGIVGTMTGNCRFY  497 (531)
Q Consensus       479 sp--dg~------~l~sgs~dg~I~iw  497 (531)
                      .|  .+.      .++.++.+|.|...
T Consensus       236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  236 IPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eecCCCCcccccceEEEEecCCEEEEE
Confidence            55  222      48888899998743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=96.98  E-value=0.0026  Score=40.02  Aligned_cols=37  Identities=43%  Similarity=0.842  Sum_probs=31.3

Q ss_pred             eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       420 ~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      +++..+. |...|++++|+| .+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            3445554 788999999999 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.93  E-value=0.35  Score=49.13  Aligned_cols=249  Identities=11%  Similarity=0.115  Sum_probs=125.3

Q ss_pred             eCCCCeEEee---------ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       244 spdg~~lasg---------s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      |||+++++..         +..+.+.|+|+.++....        +......+....|||+|+.+|-.. ++.|.+++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence            5777777663         234678889988644321        111256788999999999998875 5689999876


Q ss_pred             cCccccceecC-----------------CCCCeeEEEeecCCcceeeeecccccccc-------------------cccc
Q 009614          315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDK-------------------TKSL  358 (531)
Q Consensus       315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~  358 (531)
                      ++...+--...                 -.....+.|+++....++ +..+......                   .+..
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~-~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk  150 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF-LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK  150 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE-EEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE-EEECCcCCceEEeeccCCccccCCcccccccCC
Confidence            66432211111                 112344555555543222 2222111111                   1112


Q ss_pred             ccCCCce--EEEeCCccccccCcceeE---eecCCCCeeEEEEcCCC-eEEEEe--CC---CcEEEEECCCCeEEEEee-
Q 009614          359 RKSSDLT--CVVLPPKVFRLLEKPLHE---FQGHSSEVLDLSWSKNG-FLLSSS--AD---KTVRLWQVGIDRCLRVFS-  426 (531)
Q Consensus       359 ~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~h~~~I~~l~~sp~~-~l~s~s--~D---g~V~lwdl~~~~~l~~~~-  426 (531)
                      .+..+..  +.+++.......  .+..   +..-...+..+.|.+++ .|+..-  .+   -.+.+.|..++.+...+. 
T Consensus       151 ~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  151 AGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE  228 (353)
T ss_dssp             TTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred             CCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence            2222222  222333222111  1111   12234567889999988 344433  32   236677887765544432 


Q ss_pred             -cCCce---EEEEEe-eCCCCEEEEEeCCCe--EEEEeCCCCeEEEecCCCCceEE-EEEccCCCEEE-EEeCCC--c--
Q 009614          427 -HNNYV---TSVAFN-PVDDNYFISGSIDGK--VRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGI-VGTMTG--N--  493 (531)
Q Consensus       427 -h~~~V---~sv~fs-p~d~~~l~sgs~Dg~--I~Iwd~~~~~~~~~~~~~~~v~~-v~~spdg~~l~-sgs~dg--~--  493 (531)
                       ....|   ..+.|. +.+..+|.....||.  |.+++...+....+....-.|+. +.|.++++.|. +|..++  .  
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence             33332   345554 635556666667774  56667777776666666666754 67888877665 444422  3  


Q ss_pred             EEEEeCC-CCeE
Q 009614          494 CRFYDIK-DNQL  504 (531)
Q Consensus       494 I~iwd~~-~~~l  504 (531)
                      ++.-++. .+.+
T Consensus       309 lY~v~~~~~~~~  320 (353)
T PF00930_consen  309 LYRVSLDSGGEP  320 (353)
T ss_dssp             EEEEETTETTEE
T ss_pred             EEEEEeCCCCCe
Confidence            4444555 4443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.52  Score=48.43  Aligned_cols=198  Identities=15%  Similarity=0.178  Sum_probs=131.7

Q ss_pred             ceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEccc
Q 009614          240 SATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIE  315 (531)
Q Consensus       240 s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~  315 (531)
                      .+++++.+..+ +....++.|.+.|........      ....+.  .-..++++++++.+..+..   ++++.+.|..+
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~------~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG------SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceee------Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            46888888854 445556899999954322111      011222  5668899999987777655   57777777666


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ++......                                                             .+ ..+ ..++
T Consensus       150 ~~~~~~~~-------------------------------------------------------------vG-~~P-~~~a  166 (381)
T COG3391         150 NKVTATIP-------------------------------------------------------------VG-NTP-TGVA  166 (381)
T ss_pred             CeEEEEEe-------------------------------------------------------------cC-CCc-ceEE
Confidence            55332211                                                             11 122 6788


Q ss_pred             EcCCC-eEE-EEeCCCcEEEEECCCCeEEE-----EeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCCeEEE
Q 009614          396 WSKNG-FLL-SSSADKTVRLWQVGIDRCLR-----VFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD  465 (531)
Q Consensus       396 ~sp~~-~l~-s~s~Dg~V~lwdl~~~~~l~-----~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~~  465 (531)
                      +.|+| .++ +-..++.|.+.|.......+     ...-......+.++| ++.++++....   +.+.+.|..++.+..
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            99998 444 44578999999987766653     122334457789999 88866654443   599999999988876


Q ss_pred             ecC-CCC-ceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEee
Q 009614          466 YTD-IRE-IVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       466 ~~~-~~~-~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~~~~~  509 (531)
                      ... ... ....+..+|+|+.+.+... .+.+.+-|..+.++.....
T Consensus       246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            422 122 4677899999999988844 4889999999888776544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.88  E-value=0.1  Score=54.38  Aligned_cols=217  Identities=12%  Similarity=0.142  Sum_probs=110.5

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      ...+.++|+|++++++ .+|...|+......       .     ...+.-....|.+.+ .+|+-...++|.|+.--+..
T Consensus        35 p~~ls~npngr~v~V~-g~geY~iyt~~~~r-------~-----k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVC-GDGEYEIYTALAWR-------N-----KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SEEEE-TTSSEEEEE-ETTEEEEEETTTTE-------E-----EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred             CeeEEECCCCCEEEEE-cCCEEEEEEccCCc-------c-----cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence            4568999999999994 57778887732111       1     112445567898855 57777778899997432333


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                      ....+.... .+..+.  .   +.+               +....+..+.+|+.....    .+..+...  +|..+.|+
T Consensus       101 ~~k~i~~~~-~~~~If--~---G~L---------------L~~~~~~~i~~yDw~~~~----~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen  101 VVKSIKLPF-SVEKIF--G---GNL---------------LGVKSSDFICFYDWETGK----LIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             TT-----SS--EEEEE------SSS---------------EEEEETTEEEEE-TTT------EEEEESS---E-EEEEE-
T ss_pred             cceEEcCCc-ccceEE--c---CcE---------------EEEECCCCEEEEEhhHcc----eeeEEecC--CCcEEEEE
Confidence            322332211 011111  0   111               222233356666665432    34444422  48999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCC-----------eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          398 KNG-FLLSSSADKTVRLWQVGID-----------RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       398 p~~-~l~s~s~Dg~V~lwdl~~~-----------~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      +++ +++..+ +..+.|++....           ..+..+. ....|.+.+|.- +  .|+-.... .|+-  +..|...
T Consensus       154 ~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkY--l~~Ge~~  226 (443)
T PF04053_consen  154 DDGELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKY--LVNGETG  226 (443)
T ss_dssp             TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEE--EETTEEE
T ss_pred             CCCCEEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEE--EEcCCcc
Confidence            999 666665 457788775443           0222332 367899999975 3  44444444 6665  6666666


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      .+.....+++=+.+.|..+.+.....|+.|..+.+...
T Consensus       227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            55555667888888887788898989999988877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.28  Score=48.56  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCeEEEEeCC----------CcEEEEECC-CCeEEEEee-cCCceEEEEEeeCCCCEEEEEe-CCCeEEEEe
Q 009614          391 VLDLSWSKNGFLLSSSAD----------KTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWE  457 (531)
Q Consensus       391 I~~l~~sp~~~l~s~s~D----------g~V~lwdl~-~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd  457 (531)
                      .+++...|+|.+..+...          ..-.||-+. .+..++.+. +-..-+.|+|+| |++.|+..- ..+.|.-|+
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEe
Confidence            445556666644444333          011344443 444444443 345568899999 886666554 457888887


Q ss_pred             CCC--C----e--EEEecCCCCceEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEEEEeeee
Q 009614          458 VRR--C----Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       458 ~~~--~----~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~~~~l~~~~~~~  511 (531)
                      +..  +    +  .+......+..-.++...+|.+.+++...| .|.+|+.. ++++..+.++
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            762  1    1  122333445667788888998876666555 89999999 8998877765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.81  E-value=0.36  Score=51.40  Aligned_cols=105  Identities=10%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE------------------eCCCeEEEEeCCCCe
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG------------------SIDGKVRIWEVRRCQ  462 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg------------------s~Dg~I~Iwd~~~~~  462 (531)
                      .++.++.+|.+...|..+++.+......  ...++.+|   +.++.+                  ..+|.|.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            5778889999999999999988776422  11233333   233332                  246788899999988


Q ss_pred             EEEecCCC---------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          463 VVDYTDIR---------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       463 ~~~~~~~~---------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      .+-.....         .....-.....+..|++++.||.++.+|..+|+++.+.++
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            77222111         1111101112567889999999999999999999988765

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.71  E-value=0.052  Score=50.78  Aligned_cols=107  Identities=12%  Similarity=0.072  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEc
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC  479 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~s  479 (531)
                      +++.|+..+.+.--|..+|+.+..-.....+.+-+.-  -+++++.|+..|.+++.+..++... .+......-......
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            8888999999999999999888766556666555544  4678999999999999999999554 343333322345567


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       480 pdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +++..+..|+.|++.+..|.++...+.+.+
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEecc
Confidence            899999999999999999999988887755

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.70  E-value=0.043  Score=60.49  Aligned_cols=119  Identities=16%  Similarity=0.212  Sum_probs=81.7

Q ss_pred             CcceeEeecCCCC-eeEEEEcCC-----C-eEEEEeCCCcEEEEECCCCe--EEE----EeecCCceEEEEEeeCCCCEE
Q 009614          378 EKPLHEFQGHSSE-VLDLSWSKN-----G-FLLSSSADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYF  444 (531)
Q Consensus       378 ~~~~~~~~~h~~~-I~~l~~sp~-----~-~l~s~s~Dg~V~lwdl~~~~--~l~----~~~h~~~V~sv~fsp~d~~~l  444 (531)
                      ++.+..+..|... |..++-...     . ..+.|-.+..+..||.+-..  ++.    .+......+|++-..  ..+|
T Consensus       514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~i  591 (794)
T PF08553_consen  514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYI  591 (794)
T ss_pred             CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceE
Confidence            3456666666543 555543221     1 55677788899999998532  222    223455667777654  5689


Q ss_pred             EEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          445 ISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      |+|+.+|.||+||--..+.- .+.+...+|..|+.+.||++|++.+ +..+.++++
T Consensus       592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            99999999999995432222 3567789999999999999988777 456777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.60  E-value=0.67  Score=47.07  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             EEEEc-CCC--eEEEEeCCCc--EEEEECCCCeEEEEeecCCceEE-EEEeeCCCCEEEEEeCCC----eEEEEeCC-CC
Q 009614          393 DLSWS-KNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSIDG----KVRIWEVR-RC  461 (531)
Q Consensus       393 ~l~~s-p~~--~l~s~s~Dg~--V~lwdl~~~~~l~~~~h~~~V~s-v~fsp~d~~~l~sgs~Dg----~I~Iwd~~-~~  461 (531)
                      .+.+. +++  +|.....+|.  |.+++..++.........-.|+. +.+++..+.++.++..++    .|..-++. .+
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            45554 555  5555557776  44556656654433345566755 677884444555665533    67777778 67


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEEeC
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                      .+..+......-..+.|+|+|++++....
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            77666554444478999999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.58  E-value=0.43  Score=49.53  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=54.7

Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      +++..|++||++ +++.-..+|.+.+....-.+.  ...+...   ..-   ....++-++.|..+..|.    ..+.+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~--~~e~~~~---~~~---~p~~~~WCG~dav~l~~~----~~l~lv  284 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK--LCEFDTD---SKS---PPKQMAWCGNDAVVLSWE----DELLLV  284 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccce--eEEeecC---cCC---CCcEEEEECCCcEEEEeC----CEEEEE
Confidence            567777777777 666666667666665432221  1111111   111   234566666666666662    223222


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +..+.  .+.|..++..++..-.|| |||+.-...+++++.+
T Consensus       285 g~~~~--~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp  323 (410)
T PF04841_consen  285 GPDGD--SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP  323 (410)
T ss_pred             CCCCC--ceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence            22221  134444555555555566 7777777777766654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.49  E-value=0.39  Score=48.06  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             CCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCe-EEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC--CC
Q 009614          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RC  461 (531)
Q Consensus       387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~-~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~--~~  461 (531)
                      ..++|++|+-- +++|+.+. .+.|.+|++...+ .+..-.  ....++++...   +++++.|.....|.++...  ..
T Consensus        87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence            47889999876 44555544 4789999998877 544433  44466776664   5699999988888877544  33


Q ss_pred             eEE--EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          462 QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       462 ~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +..  ........+++++|-++++.++++..+|.+.++...
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            333  233345678999998777899999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.48  E-value=1.4  Score=45.87  Aligned_cols=216  Identities=16%  Similarity=0.114  Sum_probs=102.5

Q ss_pred             CEEEEEEccCCCEEEEE-eCCC----cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614          286 SILTMKFSLDGQYLASG-GEDG----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasg-s~Dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (531)
                      .+..+.++|+|++||-+ +..|    +|++.|+.+++.+...-. ......+.|..+....+.. .........    ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~-~~~~~~~~~----~~  198 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYT-RFDEDQRTS----DS  198 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEE-ECSTTTSS-----CC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEE-EeCcccccc----cC
Confidence            34467899999988765 3334    599999999976542211 1111124444433322222 111110000    11


Q ss_pred             CCCceEEEeCCccccccCcceeEeecCCC--CeeEEEEcCCC-e-EEEEeCC---CcEEEEECCCC-----eEEEEeecC
Q 009614          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGID-----RCLRVFSHN  428 (531)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~I~~l~~sp~~-~-l~s~s~D---g~V~lwdl~~~-----~~l~~~~h~  428 (531)
                      .....++.+......-..  ...+.....  ....+..++++ + ++.....   ..+.+.++..+     .........
T Consensus       199 ~~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             GCCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CCCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            113334444333222111  122333222  26678889998 4 4444433   34788888764     344444444


Q ss_pred             CceEEEEEeeCCCCEEEEEe---CCCeEEEEeCCCCe----EEEecCCCCceEEEEEccCCCEEEEEe-CCC--cEEEEe
Q 009614          429 NYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGT-MTG--NCRFYD  498 (531)
Q Consensus       429 ~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg--~I~iwd  498 (531)
                      ..+....-+. .+.+++...   ..+.|...++....    ...+..+...+.-..+...+.+|+... .++  .|++|+
T Consensus       277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence            4454444443 444444432   34677777877654    224455555333334444555555544 444  389999


Q ss_pred             CCCCeEEEEeee
Q 009614          499 IKDNQLYQQNQI  510 (531)
Q Consensus       499 ~~~~~l~~~~~~  510 (531)
                      +..+........
T Consensus       356 ~~~~~~~~~~~~  367 (414)
T PF02897_consen  356 LDDGKESREIPL  367 (414)
T ss_dssp             TT-TEEEEEEES
T ss_pred             CCCCcEEeeecC
Confidence            984454444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.36  E-value=0.078  Score=55.02  Aligned_cols=121  Identities=19%  Similarity=0.311  Sum_probs=83.5

Q ss_pred             EeecCCCCeeEEEEcCCC-eEEE---EeCC-CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE-EeCCCe--EE
Q 009614          383 EFQGHSSEVLDLSWSKNG-FLLS---SSAD-KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDGK--VR  454 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~-~l~s---~s~D-g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s-gs~Dg~--I~  454 (531)
                      .+......+..-.|+|++ .++.   -... ..+.++|+.+++..........-..-+|+| |++.|+- ...||.  |.
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEE
Confidence            334445567777899988 3222   2222 459999999998877777666667789999 7766554 455664  66


Q ss_pred             EEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC-CCc--EEEEeCCCCeE
Q 009614          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGN--CRFYDIKDNQL  504 (531)
Q Consensus       455 Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~--I~iwd~~~~~l  504 (531)
                      ++|+.+++...+....+.-+.-.|+|||++|+-.+. .|.  |.++++..+..
T Consensus       266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             EEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            778888776655555555557789999999988765 343  77778777665

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.32  E-value=0.073  Score=58.71  Aligned_cols=150  Identities=9%  Similarity=0.173  Sum_probs=94.3

Q ss_pred             CCCEEEEE-eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc
Q 009614          295 DGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (531)
Q Consensus       295 dg~~Lasg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (531)
                      +.++|+.- .....|+-.|+..|+.+..+..+...+ ...+.+....         ........+.+-.+..+..|+++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~---------aqlt~e~tflGls~n~lfriDpR~  561 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKF---------AQLTNEQTFLGLSDNSLFRIDPRL  561 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccc---------cccCCCceEEEECCCceEEeccCC
Confidence            34444443 345788999999999988887766543 2333332110         000111224445556677777775


Q ss_pred             ccccCccee---EeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC
Q 009614          374 FRLLEKPLH---EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       374 ~~~~~~~~~---~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      -.  .+.+.   ..........|++-..+|+||.|+.+|.||+||--..+....+. ...+|..|..+. ||+++++.+.
T Consensus       562 ~~--~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~  638 (794)
T PF08553_consen  562 SG--NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATCK  638 (794)
T ss_pred             CC--CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEeec
Confidence            33  11111   11124456889999899999999999999999954333333332 578999999999 9998887664


Q ss_pred             CCeEEEEeC
Q 009614          450 DGKVRIWEV  458 (531)
Q Consensus       450 Dg~I~Iwd~  458 (531)
                       ..+.+++.
T Consensus       639 -tyLlLi~t  646 (794)
T PF08553_consen  639 -TYLLLIDT  646 (794)
T ss_pred             -ceEEEEEE
Confidence             56777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.25  E-value=2.2  Score=45.86  Aligned_cols=61  Identities=15%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |.|.-+|+.++++.-......+...-...-.+.+++.++.+|.++.+|.++|+++.+.++.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            4577788888876632222221111111124557777888999999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.08  E-value=1.4  Score=42.11  Aligned_cols=188  Identities=15%  Similarity=0.188  Sum_probs=97.9

Q ss_pred             EEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      .+.+-...+.+|+|+|+.+ ++++....+.|...+. +|+.+..+.                                  
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~----------------------------------   60 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP----------------------------------   60 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE----------------------------------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe----------------------------------
Confidence            3455556799999999766 5555666777766665 344433322                                  


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe------EEEEee----
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR------CLRVFS----  426 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~------~l~~~~----  426 (531)
                                                +.+ .+..-.|++..++ ++++.-.++.+.++++....      ....+.    
T Consensus        61 --------------------------l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~  113 (248)
T PF06977_consen   61 --------------------------LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP  113 (248)
T ss_dssp             ---------------------------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred             --------------------------CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc
Confidence                                      111 3456778888777 55555468889998884221      112221    


Q ss_pred             --cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC---C-eE--EEe------cCCCCceEEEEEccC-CCEEEEEeCC
Q 009614          427 --HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---C-QV--VDY------TDIREIVSAVCYCPD-GKGGIVGTMT  491 (531)
Q Consensus       427 --h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~---~-~~--~~~------~~~~~~v~~v~~spd-g~~l~sgs~d  491 (531)
                        ++..+-.|+|+| ..+.|+.+-...-..||.+..   . ..  ...      ......+.+++++|. |.+++....+
T Consensus       114 ~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es  192 (248)
T PF06977_consen  114 NKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES  192 (248)
T ss_dssp             ---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred             cCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence              456689999999 555555555665566666653   1 11  111      113345789999995 4566777778


Q ss_pred             CcEEEEeCCCCeEEEEeeeeeccc-ccCCCceeeeEEEee
Q 009614          492 GNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGFQVVK  530 (531)
Q Consensus       492 g~I~iwd~~~~~l~~~~~~~~~~~-kk~~~~~It~l~f~p  530 (531)
                      ..|.++| ..|+++....+..... .......-.||+|.|
T Consensus       193 ~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  193 RLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             TEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             CeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            8899999 5677777665432100 011234567777754

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.023  Score=62.66  Aligned_cols=97  Identities=22%  Similarity=0.303  Sum_probs=73.8

Q ss_pred             eEEEEeCCCcEEEEECCCCeE--EEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCc---eE
Q 009614          401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS  474 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~--l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~---v~  474 (531)
                      .++.|+..|.|...|+...-+  .+--...++|++++|+. ++.+++.|-.+|.|.+||+..+++++ +..+..+   |.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            788899999999999876533  22223568999999998 99999999999999999999988775 4444443   44


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          475 AVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .+.+..++..++++...|.  +|.+.
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEEE
Confidence            4556667777888887776  66654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.95  E-value=1.1  Score=47.63  Aligned_cols=104  Identities=17%  Similarity=0.191  Sum_probs=66.3

Q ss_pred             eCCCcEEEEECCCCeEEEEeecC-C--------------------ce-EEEEEeeCCCCEEEEEeCCC------------
Q 009614          406 SADKTVRLWQVGIDRCLRVFSHN-N--------------------YV-TSVAFNPVDDNYFISGSIDG------------  451 (531)
Q Consensus       406 s~Dg~V~lwdl~~~~~l~~~~h~-~--------------------~V-~sv~fsp~d~~~l~sgs~Dg------------  451 (531)
                      +.++.|..+|..+++.+..+... .                    .+ ...++.+ .+..++.++.++            
T Consensus       172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~  250 (488)
T cd00216         172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPG  250 (488)
T ss_pred             CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCC
Confidence            34678888888888887766421 1                    01 1234444 456777777665            


Q ss_pred             ------eEEEEeCCCCeEEE-e--cCCCC----ceEEEEEc----cCCC---EEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          452 ------KVRIWEVRRCQVVD-Y--TDIRE----IVSAVCYC----PDGK---GGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       452 ------~I~Iwd~~~~~~~~-~--~~~~~----~v~~v~~s----pdg~---~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                            .|.-+|+.+++++- .  ..+..    ......+.    -+|.   .+++++.+|.+...|..+|+++.+...
T Consensus       251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~  329 (488)
T cd00216         251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE  329 (488)
T ss_pred             CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence                  79999999998872 2  11110    00111111    1343   678888999999999999999987654

The alignment model contains an 8-bladed beta-propeller.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.90  E-value=0.63  Score=44.52  Aligned_cols=123  Identities=12%  Similarity=0.125  Sum_probs=85.0

Q ss_pred             CCeeEEEEcCCC-eEEEEeCCC--cEEEEECCCCeEEEEeecCC--ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg--~V~lwdl~~~~~l~~~~h~~--~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      .....+.+..++ ++-+.+.-|  .|+.+|+.+++.+....-+.  .--.|+..  ++.++...-.++...+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            345678887777 666666555  69999999999887765332  23445554  345555666789999999999988


Q ss_pred             EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614          464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK  515 (531)
Q Consensus       464 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~  515 (531)
                      +........-+.++  .||+.|+.......++++|..+-+...++++...+.
T Consensus       123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~  172 (264)
T PF05096_consen  123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR  172 (264)
T ss_dssp             EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred             EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence            86555556677777  577788888778899999999999999888876654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.85  E-value=0.58  Score=47.71  Aligned_cols=154  Identities=18%  Similarity=0.223  Sum_probs=73.2

Q ss_pred             cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC--------------------CCcEEEEECCC
Q 009614          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA--------------------DKTVRLWQVGI  418 (531)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~--------------------Dg~V~lwdl~~  418 (531)
                      +...+.+++++...+.+...--. -.+....-.++-|.|.. .++|+..                    -.++.+||+.+
T Consensus       153 G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~  231 (461)
T PF05694_consen  153 GNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST  231 (461)
T ss_dssp             S-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred             CCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence            34555677777776655321110 01122334567777765 6666542                    35799999999


Q ss_pred             CeEEEEeecC---CceEEEEEeeC-CCC-EEEEEeCCCeEEEEeC-CCCe-----EEEecCC-----------------C
Q 009614          419 DRCLRVFSHN---NYVTSVAFNPV-DDN-YFISGSIDGKVRIWEV-RRCQ-----VVDYTDI-----------------R  470 (531)
Q Consensus       419 ~~~l~~~~h~---~~V~sv~fsp~-d~~-~l~sgs~Dg~I~Iwd~-~~~~-----~~~~~~~-----------------~  470 (531)
                      .+.++++...   ..+.-|.|... +.. -|+.+....+|..|-- ..++     ++.....                 .
T Consensus       232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P  311 (461)
T PF05694_consen  232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP  311 (461)
T ss_dssp             TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred             CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence            9999999743   34556777541 222 3444445556655544 3332     3322111                 3


Q ss_pred             CceEEEEEccCCCEEEEEeC-CCcEEEEeCCC-CeEEEEeeeeecc
Q 009614          471 EIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKD-NQLYQQNQICLQG  514 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~-~~l~~~~~~~~~~  514 (531)
                      .-|+.|..|.|.++|.+.+. +|.|+.||+.. .+....-++.+.|
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG  357 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG  357 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence            45899999999999977665 89999999976 3334444444433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.80  E-value=0.031  Score=38.27  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ...|.+++|+|...+||.|..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.80  E-value=0.04  Score=37.70  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ......|..++|+|...+||.|+.+|.|.+|.++
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3445679999999999999999999999999994

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.76  E-value=1.1  Score=43.44  Aligned_cols=112  Identities=16%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE---------------EeecCCceEEEE-EeeCCCCEEEEEeCCCeE
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV  453 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~---------------~~~h~~~V~sv~-fsp~d~~~l~sgs~Dg~I  453 (531)
                      |..|...|.- .|+.-+ |+.+.++++..-....               .+.....+...+ -....+...+......+|
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            8888888865 443333 5999999987544333               222233444444 112234444444555689


Q ss_pred             EEEeCCCC-----eEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       454 ~Iwd~~~~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      .||.....     +...-......+..++|.  ++.|++|..++ ..+.|+.++....
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~  171 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE  171 (275)
T ss_pred             EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE
Confidence            99887652     344445556888999998  56788887554 8888998766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.68  E-value=1.1  Score=41.76  Aligned_cols=131  Identities=10%  Similarity=0.122  Sum_probs=81.5

Q ss_pred             CCeeEEEEcCCCeEEEEeCC----------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEeCCCeEEEEe
Q 009614          389 SEVLDLSWSKNGFLLSSSAD----------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWE  457 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~D----------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd  457 (531)
                      ...++-..+|+|.+..|.+.          |.++.|-. .++....+..-.--+.++|+. +.+ +.++-+.+-.|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccc-cCcEEEEEccCceEEeeee
Confidence            34556677899955555542          33444432 222222223333346788987 554 455667777887787


Q ss_pred             --CCCCeEE------EecC----CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeee
Q 009614          458 --VRRCQVV------DYTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG  525 (531)
Q Consensus       458 --~~~~~~~------~~~~----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~  525 (531)
                        ..++.+.      .+..    .....-.++..-+|++.++.-..|+|...|..+|+++++++++        ..+||+
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~qits  258 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TPQITS  258 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CCceEE
Confidence              5555432      2222    1112334556668888888888999999999999999987754        357788


Q ss_pred             EEEe
Q 009614          526 FQVV  529 (531)
Q Consensus       526 l~f~  529 (531)
                      .+|.
T Consensus       259 ccFg  262 (310)
T KOG4499|consen  259 CCFG  262 (310)
T ss_pred             EEec
Confidence            7774

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=1.6  Score=44.92  Aligned_cols=117  Identities=19%  Similarity=0.237  Sum_probs=85.5

Q ss_pred             CeeEEEEcCCC-eEEEEe---CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 009614          390 EVLDLSWSKNG-FLLSSS---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s---~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~  464 (531)
                      ....+++.+++ .++.+.   .++++.+.|-.+++.+....-...-..+++.| +++.++.. ..++.|.+.|.....+.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence            45578888888 444443   37899999999998888865332238999999 88855554 47899999998877666


Q ss_pred             E-----ecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEEEE
Q 009614          465 D-----YTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       465 ~-----~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~~l~~~  507 (531)
                      .     ..........+.+.|+|.++.+....   +.+...|..++.....
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            3     23334455779999999977665544   5899999998887764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.66  E-value=2.1  Score=40.93  Aligned_cols=180  Identities=13%  Similarity=0.073  Sum_probs=110.9

Q ss_pred             CEEEEEEccCCCEEEEEeCCC--cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614          286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      -...+.|..+|.++-+.|.-|  .|+.+|+.+++.......+....                                  
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----------------------------------   91 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----------------------------------   91 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----------------------------------
Confidence            456788878888888888766  68899998887554433221100                                  


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCE
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~  443 (531)
                                       -.-+.-+...+..|.|          .++...+||..+-+.+..+.....=+.++.   ++..
T Consensus        92 -----------------gEGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~  141 (264)
T PF05096_consen   92 -----------------GEGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR  141 (264)
T ss_dssp             -----------------EEEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred             -----------------ceeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence                             0000011223333443          568899999999999999987777788884   5666


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEE---ecCCC---CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecc---
Q 009614          444 FISGSIDGKVRIWEVRRCQVVD---YTDIR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG---  514 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~---~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~---  514 (531)
                      |+.......++++|..+.+...   .....   ..++-+.|. +|...|=.-....|..-|..+|+....+.+..--   
T Consensus       142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~  220 (264)
T PF05096_consen  142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV  220 (264)
T ss_dssp             EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred             EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence            7666667799999998876553   22222   235566775 6766666666788999999999998877643211   


Q ss_pred             ----cccCCCceeeeEEEee
Q 009614          515 ----KKKLPGKRITGFQVVK  530 (531)
Q Consensus       515 ----~kk~~~~~It~l~f~p  530 (531)
                          .+.+......||++.|
T Consensus       221 ~~~~~~~~~~dVLNGIAyd~  240 (264)
T PF05096_consen  221 GRDKSRQPDDDVLNGIAYDP  240 (264)
T ss_dssp             TSTTST--TTS-EEEEEEET
T ss_pred             cccccccccCCeeEeEeEeC
Confidence                1223356889999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.34  E-value=0.91  Score=38.50  Aligned_cols=105  Identities=15%  Similarity=0.219  Sum_probs=76.7

Q ss_pred             eEEEEeCCCcEEEEECC--------CCeEEEEeecCCceEEEEEeeC----CCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 009614          401 FLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~--------~~~~l~~~~h~~~V~sv~fsp~----d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~  468 (531)
                      .|+.++.-+.|.|++..        ....+..+..+..|++|+--|-    ....|+.|+. ..+..||+....-+-+..
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke   90 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE   90 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence            67888888999999875        3345677778888999976653    3456777765 589999999988777777


Q ss_pred             CCCceEEEEEcc----CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          469 IREIVSAVCYCP----DGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       469 ~~~~v~~v~~sp----dg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ..+.|.++.+-.    +..++++|+ +-.|.-||....++...
T Consensus        91 ~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   91 VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence            778888888743    344555554 56677788877776654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.27  E-value=4.3  Score=41.91  Aligned_cols=82  Identities=13%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEE-EEEc-cC----------------CC-EEEEE
Q 009614          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSA-VCYC-PD----------------GK-GGIVG  488 (531)
Q Consensus       429 ~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~-v~~s-pd----------------g~-~l~sg  488 (531)
                      -.+.+|+.+| ++++.|+...=|.|.++|+.++.++. |++..+.-.. +... +.                .. +++-+
T Consensus       308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            4578899999 78888887777999999999988775 5555443111 1100 00                11 23446


Q ss_pred             eCCCcEEEEeCCCCeEEEEeeee
Q 009614          489 TMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       489 s~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      -.-|.|.||.++.|..+..+.+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEeC
Confidence            67899999999999998887764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=0.48  Score=52.86  Aligned_cols=81  Identities=19%  Similarity=0.267  Sum_probs=59.2

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      .+..++.|+..|.|...|+...-..+...      ..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQN------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcC------CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            44567888888988888776432111100      113579999999999999999999999999999998887777655


Q ss_pred             CCCCeeE
Q 009614          326 DTDPSCL  332 (531)
Q Consensus       326 ~~~~~~~  332 (531)
                      ..+...+
T Consensus       172 ~ap~t~v  178 (1206)
T KOG2079|consen  172 GAPVTGV  178 (1206)
T ss_pred             CCccceE
Confidence            5544443

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.11  E-value=0.62  Score=50.57  Aligned_cols=103  Identities=11%  Similarity=0.067  Sum_probs=60.9

Q ss_pred             eeEEEEcCCC-eEEEEeCC------------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE--
Q 009614          391 VLDLSWSKNG-FLLSSSAD------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI--  455 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~D------------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I--  455 (531)
                      ...-.|+|+| .|++....            +.+.+.++..+....  .....|..+.|+| |+..++... +|+|+|  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            5667788886 55554422            233333444333322  3356799999999 999887765 577777  


Q ss_pred             -EeCCCCeE-E----Ee-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          456 -WEVRRCQV-V----DY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       456 -wd~~~~~~-~----~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                       -....+.. +    .+ ......+.++.|.+++.++ ++..++...+|.
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence             44344431 1    12 2233446889999999854 555555444454

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.90  E-value=0.6  Score=48.23  Aligned_cols=118  Identities=17%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             cceeEeecCCCCeeEEEEcCCC---e-----EEEEeCCCcEEEEECCCCe--EEEEe-----ecCCceEEEEEeeCCCCE
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG---F-----LLSSSADKTVRLWQVGIDR--CLRVF-----SHNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~---~-----l~s~s~Dg~V~lwdl~~~~--~l~~~-----~h~~~V~sv~fsp~d~~~  443 (531)
                      +.+.++.-|.. |+-+.+.|+.   .     -+.|-.|..|.-||.+-..  .+..-     .....-.|.+-.  ...+
T Consensus       367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~  443 (644)
T KOG2395|consen  367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGY  443 (644)
T ss_pred             eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCce
Confidence            34555555544 6666666654   2     2345678889999987322  22211     123334444443  5679


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +++||.+|.||+||.-..+.- .+.+...+|..|..+.||++|+..+ +..+.+-++.
T Consensus       444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            999999999999998332222 3778889999999999999887766 5556666653

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.79  E-value=0.089  Score=48.46  Aligned_cols=100  Identities=13%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             eEEEEeCCCcEEEEECCCCeE-EEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--CceEEE
Q 009614          401 FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAV  476 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~-l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~--~~v~~v  476 (531)
                      .++.|+.+|.|.+|....... ...+ .....|-++.-.-.++.+..+++.||.||.|++.-.+.+.+.++.  .++...
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            789999999999998862111 1111 122333333333235668999999999999999998888654443  344444


Q ss_pred             EEccCCCEEEEE--eCCCcEEEEeCC
Q 009614          477 CYCPDGKGGIVG--TMTGNCRFYDIK  500 (531)
Q Consensus       477 ~~spdg~~l~sg--s~dg~I~iwd~~  500 (531)
                      .....++.|+.+  +.|..++.|++.
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchh
Confidence            444445555555  556666666654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.75  E-value=0.71  Score=47.71  Aligned_cols=151  Identities=14%  Similarity=0.245  Sum_probs=93.1

Q ss_pred             cCCCEE-EEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614          294 LDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (531)
Q Consensus       294 pdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (531)
                      .+.++| .++..-..++-.|+..|+.+.+...... +..+.+.+.....         .+.....+.+-.+..+..|+++
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~---------Ql~~e~TlvGLs~n~vfriDpR  412 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA---------QLTSEQTLVGLSDNSVFRIDPR  412 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh---------cccccccEEeecCCceEEeccc
Confidence            344444 4455556688889999998887776655 3333333332211         1112223445556667778887


Q ss_pred             cccccCcceeEeecC----CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEE
Q 009614          373 VFRLLEKPLHEFQGH----SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFIS  446 (531)
Q Consensus       373 ~~~~~~~~~~~~~~h----~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~s  446 (531)
                      +....  .+...++|    .....|++--.+|+++.|+.+|.||+||- .+...++ +. ...+|..|..+. +|.+|++
T Consensus       413 v~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvta-dGKwil~  488 (644)
T KOG2395|consen  413 VQGKN--KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTA-DGKWILA  488 (644)
T ss_pred             ccCcc--eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeec-cCcEEEE
Confidence            54331  12222233    23566777777889999999999999997 4433332 32 678899999998 8888776


Q ss_pred             EeCCCeEEEEeCC
Q 009614          447 GSIDGKVRIWEVR  459 (531)
Q Consensus       447 gs~Dg~I~Iwd~~  459 (531)
                      .+ +..+.+-++.
T Consensus       489 Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  489 TC-KTYLLLIDTL  500 (644)
T ss_pred             ec-ccEEEEEEEe
Confidence            55 4567666653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.62  E-value=2.9  Score=40.37  Aligned_cols=172  Identities=12%  Similarity=0.178  Sum_probs=101.4

Q ss_pred             EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC-CCeeEEEeecCCcceeeeecccccccccccc
Q 009614          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      +.+-...|.++.|+|+.+.|++......-.||=..+|+.+..++.... .+-.+.+..++  ..+..+-   .......+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~dE---R~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIVDE---RDRALYLF  155 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEEeh---hcceEEEE
Confidence            455566699999999999999998888888888888988888765432 12222222211  1111110   01111112


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe-EEE--Ee-ec------
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLR--VF-SH------  427 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~-~l~--~~-~h------  427 (531)
                      +...+..+.......+     ++......+...-.++|.|.+ .|+.+-...-+.||.+.... .+.  .. .+      
T Consensus       156 ~vd~~t~~~~~~~~~i-----~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         156 TVDADTTVISAKVQKI-----PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             EEcCCccEEeccceEE-----eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            2222222221111110     122222236678899999988 88888888888888776332 111  11 01      


Q ss_pred             -CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          428 -NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       428 -~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                       -..|.++.|++..+.+++-+..++.+.-.|....
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence             2357788999877778888888888888887755

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=0.17  Score=56.58  Aligned_cols=135  Identities=13%  Similarity=0.101  Sum_probs=89.3

Q ss_pred             CeeEEEEcCCC---eEEEEeCCCcEEEEECCCCe--------EEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR--------CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       390 ~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~--------~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      .|..+...+++   .++..+++-.|..||+++-.        +++.-    .......++.|+|.-....+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556666665   44455556678999987422        11111    13456688999996566778888999999


Q ss_pred             EEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       455 Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      +..+...... .........++++|+|.|+.+++|-..|++.-|-.. .++...+.-    .......+|++|.|-
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~----Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE----PPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccC----CCcCCCcceeEEEEe
Confidence            9887754333 334667789999999999999999999999988754 222222221    111224678887763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.40  E-value=7.3  Score=40.38  Aligned_cols=245  Identities=11%  Similarity=0.044  Sum_probs=116.9

Q ss_pred             ceeeeCCCCeEEee-----ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--------
Q 009614          240 SATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--------  306 (531)
Q Consensus       240 s~~fspdg~~lasg-----s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--------  306 (531)
                      ...++|+|+++|.+     +....|++.|+.++....      ..+....  -..+.|.++++.|+....+.        
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~------d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP------DGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE------EEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC------Ccccccc--cceEEEeCCCCEEEEEEeCcccccccCC
Confidence            46899999999854     333569999998763221      1122111  12399999988776654333        


Q ss_pred             ---cEEEEEcccCccc--cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC-ceEEEeCCccccccCcc
Q 009614          307 ---TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       307 ---~I~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  380 (531)
                         .|..|.+.+...-  ..+.........+..........+.+.           ...... ..+++.+..........
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~-----------~~~~~~~s~v~~~d~~~~~~~~~~  268 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS-----------SSSGTSESEVYLLDLDDGGSPDAK  268 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE-----------EESSSSEEEEEEEECCCTTTSS-S
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE-----------EEccccCCeEEEEeccccCCCcCC
Confidence               3777777666533  122222222212222222222222111           111222 34444444332101112


Q ss_pred             eeEeecCCCCee-EEEEcCCC-eEEEEe---CCCcEEEEECCCCeE---E-EEeecCCc--eEEEEEeeCCCCEEEEEeC
Q 009614          381 LHEFQGHSSEVL-DLSWSKNG-FLLSSS---ADKTVRLWQVGIDRC---L-RVFSHNNY--VTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       381 ~~~~~~h~~~I~-~l~~sp~~-~l~s~s---~Dg~V~lwdl~~~~~---l-~~~~h~~~--V~sv~fsp~d~~~l~sgs~  449 (531)
                      ...+..+...+. .+... ++ +++...   ..+.|.-.++.....   . ..+.+...  +..+...  .+.+++..-.
T Consensus       269 ~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~  345 (414)
T PF02897_consen  269 PKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRE  345 (414)
T ss_dssp             EEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEE
T ss_pred             cEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEE
Confidence            233333333333 34333 44 333322   235676777776542   2 34445553  4444442  3444455444


Q ss_pred             CC--eEEEEeCC-CCeEEEecC-CCCceEEEEEccCCCEEEEEeC----CCcEEEEeCCCCeEEE
Q 009614          450 DG--KVRIWEVR-RCQVVDYTD-IREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       450 Dg--~I~Iwd~~-~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~----dg~I~iwd~~~~~l~~  506 (531)
                      ++  .|+++++. +........ ..+.|..+...+++..+...-.    -+++.-||+.++++..
T Consensus       346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            54  58899999 554444332 3344666666666655433222    3568899999988753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.06  E-value=2.3  Score=42.24  Aligned_cols=58  Identities=12%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEEEec
Q 009614          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       410 ~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      .|-++|+.+++.+..+.-..++.+|+.+..+..+|++. ..++.+.|||..+++.+...
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            38888999999999998777888999998555577655 45799999999999988543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.04  E-value=2.1  Score=43.72  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=57.1

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCC-----eE---EEEeec-----CCceEEEEEeeCCCCEEEEEeCC------
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGID-----RC---LRVFSH-----NNYVTSVAFNPVDDNYFISGSID------  450 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~-----~~---l~~~~h-----~~~V~sv~fsp~d~~~l~sgs~D------  450 (531)
                      ..+.|++.+++ |+.++....+++.|....     +.   +..+..     ......++|.| |+.+.++-+..      
T Consensus        73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT  150 (367)
T ss_pred             CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence            45778888888 444555544444455321     11   112221     24477899999 88766654421      


Q ss_pred             -------------CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEe
Q 009614          451 -------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       451 -------------g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs  489 (531)
                                   |.|.-++..+++...+.........++|+|+|+++++-.
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                         445666666655443333334457899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.96  E-value=0.42  Score=51.85  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             CCCCeeEEEEcCCC-eEEEEe------CCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC-------
Q 009614          387 HSSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-------  450 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s------~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-------  450 (531)
                      ....+...+++|+| .++..-      .|.  .|.+++... .. ..+......+.-.|+| ++..+++....       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEe
Confidence            33467889999999 444333      243  455555422 22 3333333478889999 87776666432       


Q ss_pred             -----CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEE---EeCCCCe
Q 009614          451 -----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF---YDIKDNQ  503 (531)
Q Consensus       451 -----g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i---wd~~~~~  503 (531)
                           +.+.+.++..+....  .....|..+.|+|||..|+... +|.|++   -....|.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence                 233333443333222  3356799999999999888766 577777   4444554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.87  E-value=0.95  Score=47.56  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=74.7

Q ss_pred             cCCCCeeEEEEcCCC-----eEEEEeCCCcEEEEECC-----CCeEEEEe--ec--CCc--eEEEEEeeCCCCEEEEEeC
Q 009614          386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVG-----IDRCLRVF--SH--NNY--VTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~-----~~~~l~~~--~h--~~~--V~sv~fsp~d~~~l~sgs~  449 (531)
                      |.-..|..+.|.|-+     .|++....+.|.+|.+.     .++.+...  ..  .-+  -..+.||| ....|++-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            344568999999953     66777778999999985     22222221  11  222  25678999 7777777665


Q ss_pred             CCeEEEEeCCC--CeEEEecCCCCceEEEEEccCCCEEEEEeCC-CcEEEEeCC
Q 009614          450 DGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIK  500 (531)
Q Consensus       450 Dg~I~Iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~I~iwd~~  500 (531)
                      ...-.+++++.  .++..-....+-|.+.||.+||+.|+++-.. =.-+|||-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            55545666653  3333344667889999999999988776533 346788754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.84  E-value=3.3  Score=44.97  Aligned_cols=109  Identities=19%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             CC-eEEEEeCC------CcEEEEECCCCeEEEEeec--CCceEEEEEeeCCCCEEEEEeCCC-----eEEEEeCCCCeEE
Q 009614          399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV  464 (531)
Q Consensus       399 ~~-~l~s~s~D------g~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs~Dg-----~I~Iwd~~~~~~~  464 (531)
                      +| ..+.|+.+      .+|..||..+++....-..  .-.-..++.-  ++.+.+.|+.|+     +|..||..+.+..
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            45 55666644      4577888888766544321  1111223332  678888888876     3788998887766


Q ss_pred             EecCCCCceEEEEEc-cCCCEEEEEeCCCc-----EEEEeCCCCeEEEEee
Q 009614          465 DYTDIREIVSAVCYC-PDGKGGIVGTMTGN-----CRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       465 ~~~~~~~~v~~v~~s-pdg~~l~sgs~dg~-----I~iwd~~~~~l~~~~~  509 (531)
                      ....-......+... -+++..++|+.||.     |..||..+++......
T Consensus       505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             EcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            543333333322222 26677788888874     7788888777654433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.58  E-value=2.3  Score=45.98  Aligned_cols=110  Identities=12%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             CCCeeEEEEcCCCeEE-EEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeC-CCCEEEEEeCCCeEEEEeCCC---
Q 009614          388 SSEVLDLSWSKNGFLL-SSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRR---  460 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~-s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~---  460 (531)
                      ...+.-+.-+.-+.++ ..+....+.|||.+.+.....-  ...+.|..+.|... +++.+++.+....|.+|--..   
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            3344445444445333 3444567999999988755443  35889999998541 778888888999999986421   


Q ss_pred             ------C---eEEEecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          461 ------C---QVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       461 ------~---~~~~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                            .   +.+....++ .+|.+.+|.++|.+++.++  +.+.|+|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                  1   122344444 6799999999997555443  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=93.57  E-value=2.3  Score=46.16  Aligned_cols=93  Identities=5%  Similarity=-0.029  Sum_probs=54.4

Q ss_pred             CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC------CeEEEEeCCC-CeEEE---ecCCCCceEEE
Q 009614          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRR-CQVVD---YTDIREIVSAV  476 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D------g~I~Iwd~~~-~~~~~---~~~~~~~v~~v  476 (531)
                      ..+..||..+.+....-.  +...-.+++..  ++.+.+.|+.+      ..|..||..+ .+-..   +.........+
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~  509 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI  509 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence            357788888776543322  11111122222  56777777754      2467899887 44432   22222222222


Q ss_pred             EEccCCCEEEEEeCCC--cEEEEeCCCCeEE
Q 009614          477 CYCPDGKGGIVGTMTG--NCRFYDIKDNQLY  505 (531)
Q Consensus       477 ~~spdg~~l~sgs~dg--~I~iwd~~~~~l~  505 (531)
                      ++  +|++.++|+.+|  .+..||..+++-.
T Consensus       510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EE--CCEEEEEeeecceeehhhcCccccccc
Confidence            32  788899999988  7888888887654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.41  E-value=2  Score=47.68  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=27.6

Q ss_pred             CCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCC
Q 009614          387 HSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI  418 (531)
Q Consensus       387 h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~  418 (531)
                      +...|..+.|+|.+    +|+.-..|+++|+||+..
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            45679999999963    889999999999999974

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.36  E-value=4.5  Score=44.93  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCc---cccc---ccccceEE--------cccCCCEEEEEEccC---CCEE
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQS---RELS---SLYTGQEF--------LAHEGSILTMKFSLD---GQYL  299 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~---~~~~---~~~~~~~l--------~~H~~~I~~l~fspd---g~~L  299 (531)
                      .|..+.++|+|.++|..+..|.+.+ .+....   ..+.   ....++++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3445889999999998877664444 333210   0010   00011111        234568999999995   5789


Q ss_pred             EEEeCCCcEEEEEcccCc
Q 009614          300 ASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       300 asgs~Dg~I~iWd~~~~~  317 (531)
                      +.=..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            989999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.17  E-value=5.1  Score=43.94  Aligned_cols=109  Identities=10%  Similarity=0.107  Sum_probs=75.8

Q ss_pred             CeeEEEEcCCC---eEEEEeCCCcEEEEECCC-------C-------------eEEEEeecCCceEEEEEe--eCCCCEE
Q 009614          390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGI-------D-------------RCLRVFSHNNYVTSVAFN--PVDDNYF  444 (531)
Q Consensus       390 ~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~-------~-------------~~l~~~~h~~~V~sv~fs--p~d~~~l  444 (531)
                      .|+-|....=|   .|+.|..||.|.+|.+..       .             ++...+.....+++++++  . ..++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence            35555444322   899999999999997621       0             122233456789999998  6 77888


Q ss_pred             EEEeCCCeEEEEeCCCC--eEE--EecCCCCceEEEEEccCC---C---EEEEEeCCCcEEEEeC
Q 009614          445 ISGSIDGKVRIWEVRRC--QVV--DYTDIREIVSAVCYCPDG---K---GGIVGTMTGNCRFYDI  499 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~--~~~--~~~~~~~~v~~v~~spdg---~---~l~sgs~dg~I~iwd~  499 (531)
                      |+++....|.||-....  +..  .-..+...|.+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888888866542  221  123356678899998743   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.07  E-value=11  Score=38.19  Aligned_cols=250  Identities=11%  Similarity=0.070  Sum_probs=111.3

Q ss_pred             eeeeCCCCeEEe-eecCCe--EEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          241 ATLKPGDHELTL-GQRMRR--VRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       241 ~~fspdg~~las-gs~dg~--I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      =+|.++|+.|+- +..+|.  +.+.|+.++...  +      |..+. .......++|+.+.|+-.-....|+--|+.+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~--Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~  112 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT--Q------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL  112 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE--E---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE--E------CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence            478999977665 444554  455555544332  2      22222 22234567788888776666678888899888


Q ss_pred             ccccceecCCCCCeeEEEeecCCccee-eeecccccc-------ccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLI-PIDVDKEKI-------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      +....+..+..-.....+..+.....+ .+.......       .............++..+....     ....+..-.
T Consensus       113 e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----~~~~v~~~~  187 (386)
T PF14583_consen  113 EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----ERKVVFEDT  187 (386)
T ss_dssp             -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------EEEEEEES
T ss_pred             cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----ceeEEEecC
Confidence            765555555554444455444433332 222111100       0011122233333444443332     233344456


Q ss_pred             CCeeEEEEcCCC--eEEEEeC---CCc-EEEEECC--CCeEEEEeec--CCceEEEEEeeCCCCEEEEEe-----CCCeE
Q 009614          389 SEVLDLSWSKNG--FLLSSSA---DKT-VRLWQVG--IDRCLRVFSH--NNYVTSVAFNPVDDNYFISGS-----IDGKV  453 (531)
Q Consensus       389 ~~I~~l~~sp~~--~l~s~s~---Dg~-V~lwdl~--~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs-----~Dg~I  453 (531)
                      ..+.-+.++|..  +|.-|-.   +.. -|||-++  .........+  ...+.-=-|.| ||..|.--+     .+..|
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i  266 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWI  266 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEE
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEE
Confidence            677889999987  5555542   332 3667554  3333222222  22334445788 666554322     24457


Q ss_pred             EEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC----------------cEEEEeCCCCeEE
Q 009614          454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG----------------NCRFYDIKDNQLY  505 (531)
Q Consensus       454 ~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg----------------~I~iwd~~~~~l~  505 (531)
                      .-+|+.+++...+..- .....+--++||+++|-=+.|.                -|+++++..++..
T Consensus       267 ~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~  333 (386)
T PF14583_consen  267 AGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR  333 (386)
T ss_dssp             EEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred             EeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence            7778887754432222 2455667788999876644432                4667888776654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.05  E-value=18  Score=40.59  Aligned_cols=102  Identities=9%  Similarity=0.059  Sum_probs=61.7

Q ss_pred             CCcEEEEECCCCeEEEEeecC----------C--------ce-EEEEEeeCCCCEEEEEe------------------CC
Q 009614          408 DKTVRLWQVGIDRCLRVFSHN----------N--------YV-TSVAFNPVDDNYFISGS------------------ID  450 (531)
Q Consensus       408 Dg~V~lwdl~~~~~l~~~~h~----------~--------~V-~sv~fsp~d~~~l~sgs------------------~D  450 (531)
                      +|.|+-+|+.+|+.+..+...          +        .+ ..++++| ...+++.+.                  ..
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~  413 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYS  413 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCccccc
Confidence            678999999999888776411          0        01 2345555 333333321                  23


Q ss_pred             CeEEEEeCCCCeEE-Eec--CCC-------CceEEEEEcc-CCC---EEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          451 GKVRIWEVRRCQVV-DYT--DIR-------EIVSAVCYCP-DGK---GGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       451 g~I~Iwd~~~~~~~-~~~--~~~-------~~v~~v~~sp-dg~---~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      +.|.-.|+.+++.. ++.  .|.       ....-+.+.. +|+   .++.++.+|.++++|-++|+++...+.
T Consensus       414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            45666788888766 222  221       1111122322 663   789999999999999999999976553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.96  E-value=0.38  Score=44.41  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      -+.-+++|+.+|.|++|+........ ...    ..+-..-.+.|.--.++.+..+++.||.|+.|++.-++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~-d~~----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k  135 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHS-DRV----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK  135 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHH-Hhh----hcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence            34567889999999999887222111 000    11112222233333466688999999999999986544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.92  E-value=1.4  Score=49.76  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=71.5

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       389 ~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      ....++.|+|.=  ..+.+..|+.|++..+.. .+.+..+.....++|++|+| .|..++.|-..|++.-|-..-.....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~  234 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSE  234 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeec
Confidence            345678888875  677788899999887753 23334456677899999999 99999999999999988765432221


Q ss_pred             ec----CCCCceEEEEEccCCCEEEEE
Q 009614          466 YT----DIREIVSAVCYCPDGKGGIVG  488 (531)
Q Consensus       466 ~~----~~~~~v~~v~~spdg~~l~sg  488 (531)
                      +.    .....|.+|+|-..-.++|+-
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            11    114678999998777666653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.70  E-value=6.8  Score=41.45  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=58.8

Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCC--CeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEE----
Q 009614          393 DLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV----  464 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~----  464 (531)
                      ...|+|.. .|+.-.....-.+++++.  .+...-+...+.|.|.+|.+ ||+.|+++ +..=.-+|||-......    
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf  195 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF  195 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence            46699988 555555444445666653  33344456788999999999 77766554 33446789987654322    


Q ss_pred             -EecCCCCceEEEEEccCCCEEEEEeC
Q 009614          465 -DYTDIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       465 -~~~~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                       ...+..+.|.+|.-.-|. .+|+++.
T Consensus       196 cPVFdv~~~Icsi~AT~ds-qVAvaTE  221 (671)
T PF15390_consen  196 CPVFDVGGYICSIEATVDS-QVAVATE  221 (671)
T ss_pred             ceeecCCCceEEEEEeccc-eEEEEec
Confidence             244555566666655444 3444443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.64  E-value=12  Score=37.51  Aligned_cols=72  Identities=14%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             EeecCCceEEEEEeeC------CCCEEEEEeCCCeEEEEeCCCCe-EE---E-ecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          424 VFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQ-VV---D-YTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       424 ~~~h~~~V~sv~fsp~------d~~~l~sgs~Dg~I~Iwd~~~~~-~~---~-~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      .+.+...++.+.|.+.      .+.+|++.-..+.|....+.... +.   . +......+..|++.|||.++++-..+|
T Consensus       248 ~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G  327 (331)
T PF07995_consen  248 AYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG  327 (331)
T ss_dssp             EETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred             eecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence            3445567788888752      34566666666788888887543 22   2 233444799999999999888888888


Q ss_pred             cEE
Q 009614          493 NCR  495 (531)
Q Consensus       493 ~I~  495 (531)
                      .|+
T Consensus       328 ~iy  330 (331)
T PF07995_consen  328 KIY  330 (331)
T ss_dssp             TEE
T ss_pred             eEe
Confidence            764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.60  E-value=11  Score=36.82  Aligned_cols=67  Identities=13%  Similarity=0.068  Sum_probs=47.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEe--cCCCCceEEEEEcc------CCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          443 YFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~~~~v~~v~~sp------dg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .=+.|..-|.|-+||+...-+.++  .+.-...+.|+..|      .|.+|+----||+|..||..+++.+-+.+
T Consensus       214 d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       214 DEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             ccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence            334455567899999986544433  23334567788866      56777777779999999999988776554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.43  E-value=3.2  Score=40.04  Aligned_cols=116  Identities=9%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      .+-...+.++.|+|+. .|++..+...-.||=...|+.++++.  .-...-.|.+.- ++++.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            4445569999999998 77777777777777777888888875  222345566765 6777777777888888877654


Q ss_pred             eE-E-------E--ecCC-CCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          462 QV-V-------D--YTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       462 ~~-~-------~--~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      .. +       .  ...+ +...-.++|.|....|.++-...-+.||.+..
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            21 1       1  1122 56788999999999999999888888887763

>PHA03098 kelch-like protein; Provisional

Probab=91.99  E-value=10  Score=40.76  Aligned_cols=93  Identities=18%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeCC--------CeEEEEeCCCCeEEEecCC---CCceEE
Q 009614          409 KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVVDYTDI---REIVSA  475 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~D--------g~I~Iwd~~~~~~~~~~~~---~~~v~~  475 (531)
                      ..+..||..+++....-..+  ..-.+++..  ++.+++.|+.+        ..+.+||..+.+-......   ......
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~  483 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL  483 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence            45788888776654332211  111222222  56677777643        2388999988765433211   111122


Q ss_pred             EEEccCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 009614          476 VCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLY  505 (531)
Q Consensus       476 v~~spdg~~l~sgs~d-----g~I~iwd~~~~~l~  505 (531)
                      +.  .+++.++.|+.+     +.|.+||..+++-.
T Consensus       484 ~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        484 CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            22  277777888764     46889998877653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.96  E-value=3.6  Score=46.12  Aligned_cols=112  Identities=13%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCce---------EEEEEee---------------CCCCEEEEEeCCCeEE
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV---------TSVAFNP---------------VDDNYFISGSIDGKVR  454 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V---------~sv~fsp---------------~d~~~l~sgs~Dg~I~  454 (531)
                      ++.|+.++.++.|.-.|..+++.+..+.....+         ..+.+..               ..+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            447888888899999999999998888633221         1233321               1344788889999999


Q ss_pred             EEeCCCCeEEEecCCCCceE-------------EEEEcc--CCCEEEEEeC----------CCcEEEEeCCCCeEEEEee
Q 009614          455 IWEVRRCQVVDYTDIREIVS-------------AVCYCP--DGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       455 Iwd~~~~~~~~~~~~~~~v~-------------~v~~sp--dg~~l~sgs~----------dg~I~iwd~~~~~l~~~~~  509 (531)
                      -.|..+++..-..+....|.             .+.-.|  .+..+++|+.          +|.|+-||+.+|+++.++.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99999998874333222210             111112  2345666643          6889999999999998876


Q ss_pred             e
Q 009614          510 I  510 (531)
Q Consensus       510 ~  510 (531)
                      .
T Consensus       354 ~  354 (764)
T TIGR03074       354 P  354 (764)
T ss_pred             c
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.92  E-value=6.7  Score=36.65  Aligned_cols=89  Identities=10%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEE--CCCCeE-----EEEeec-----CCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614          391 VLDLSWSKNG--FLLSSSADKTVRLWQ--VGIDRC-----LRVFSH-----NNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (531)
Q Consensus       391 I~~l~~sp~~--~l~s~s~Dg~V~lwd--l~~~~~-----l~~~~h-----~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw  456 (531)
                      -+.|+|+.+.  +.++-+.+-+|.-||  ..+|..     +..+..     ....-.++... +++++++.-..++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            3567777665  555666777777777  444432     212211     11123345555 88899998889999999


Q ss_pred             eCCCCeEEE-ecCCCCceEEEEEcc
Q 009614          457 EVRRCQVVD-YTDIREIVSAVCYCP  480 (531)
Q Consensus       457 d~~~~~~~~-~~~~~~~v~~v~~sp  480 (531)
                      |..+++.+. +.-....|+++||--
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecC
Confidence            999999874 555678899999964

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.91  E-value=0.52  Score=31.36  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=26.1

Q ss_pred             CCEEEEEEccCC---CEEEEEeCCCcEEEEEccc
Q 009614          285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       285 ~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ++|.+++|+|..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.66  E-value=27  Score=39.35  Aligned_cols=123  Identities=13%  Similarity=0.090  Sum_probs=74.8

Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeC--CCC---EEEEEeCCCeEEEE-eCC
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV--DDN---YFISGSIDGKVRIW-EVR  459 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~--d~~---~l~sgs~Dg~I~Iw-d~~  459 (531)
                      +.++..+.+.+. .++.++.++.+...++..+......  .....|.|+.++|.  ..+   +++.|..+..+.+. -+.
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p  567 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP  567 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence            344444444444 6666676677777777655522222  24678999999984  333   78888877665443 333


Q ss_pred             CCeEEE-----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEE--eCCCCeEEEEeeee
Q 009614          460 RCQVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY--DIKDNQLYQQNQIC  511 (531)
Q Consensus       460 ~~~~~~-----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw--d~~~~~l~~~~~~~  511 (531)
                      ....+.     .......|.-.++-.|..+|.++..||.+..|  |..++++-...+..
T Consensus       568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~  626 (1096)
T KOG1897|consen  568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT  626 (1096)
T ss_pred             CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccc
Confidence            333332     12223345556666778999999999998666  55566665544433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.50  E-value=5.9  Score=43.46  Aligned_cols=168  Identities=17%  Similarity=0.184  Sum_probs=95.3

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccc-----cccc--------eEE--cccCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSS-----LYTG--------QEF--LAHEGSILTMKFSL--DGQYLASGGEDGTVR  309 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~-----~~~~--------~~l--~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~  309 (531)
                      ..++.++. .+.|.||+..........     +...        ..+  ..-...|+-|....  +...|+.|.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777764 789999998754442210     0000        000  00223467666654  456899999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +|.+.+--.  .+..........                              .          .+..-+|...+. -..
T Consensus       128 ~Yyt~~I~~--~i~~~~~~~~~~------------------------------~----------~r~~i~P~f~~~-v~~  164 (717)
T PF08728_consen  128 AYYTETIIE--AIERFSEDNDSG------------------------------F----------SRLKIKPFFHLR-VGA  164 (717)
T ss_pred             EEEHHHHHH--HHHhhccccccc------------------------------c----------ccccCCCCeEee-cCC
Confidence            998754211  010000000000                              0          000012222222 233


Q ss_pred             CeeEEEEc--CCC-eEEEEeCCCcEEEEECCCC--eEE--EEeecCCceEEEEEeeCC--CC---EEEEEeCCCeEEEEe
Q 009614          390 EVLDLSWS--KNG-FLLSSSADKTVRLWQVGID--RCL--RVFSHNNYVTSVAFNPVD--DN---YFISGSIDGKVRIWE  457 (531)
Q Consensus       390 ~I~~l~~s--p~~-~l~s~s~Dg~V~lwdl~~~--~~l--~~~~h~~~V~sv~fsp~d--~~---~l~sgs~Dg~I~Iwd  457 (531)
                      ..++++++  ... +||.+++...|.||-....  +..  ....+...|.+|+|-+.+  +.   ++++++..|.+.+|+
T Consensus       165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            68888888  555 7788888888888765432  111  122367789999998743  22   788899999999988


Q ss_pred             C
Q 009614          458 V  458 (531)
Q Consensus       458 ~  458 (531)
                      +
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            7

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.34  E-value=3.9  Score=40.55  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=70.0

Q ss_pred             ccccceeeeCCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC-cEEEEEc
Q 009614          236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKV  313 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg-~I~iWd~  313 (531)
                      ...+.++||||++.+..... .+.|.-+++...............+..+.+.--.++...+|.+.+++..+| .|.+|+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            34456999999987766644 488888888742111111111122333456667788888888776555554 8999998


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceee
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIP  344 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (531)
                      . ++.+..+..+...+.++.|--.....++.
T Consensus       243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             C-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            8 88888888886667776665554444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.29  E-value=1.7  Score=40.74  Aligned_cols=74  Identities=11%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--------ec-------CCCCceEEEEEccCCCEEEEEeCCC
Q 009614          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------YT-------DIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       428 ~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--------~~-------~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      ..++..+.  . .+.++++-+.+|.+++||+.+++.+.        +.       .....|..+.++.+|.-|++-+ +|
T Consensus        12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng   87 (219)
T PF07569_consen   12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG   87 (219)
T ss_pred             CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence            34444444  3 67899999999999999999987652        11       3556789999999998777665 68


Q ss_pred             cEEEEeCCCCeEE
Q 009614          493 NCRFYDIKDNQLY  505 (531)
Q Consensus       493 ~I~iwd~~~~~l~  505 (531)
                      ..+.|+..-+.-+
T Consensus        88 ~~y~y~~~L~~W~  100 (219)
T PF07569_consen   88 DSYSYSPDLGCWI  100 (219)
T ss_pred             CEEEeccccceeE
Confidence            8999988755443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.11  E-value=5.5  Score=38.34  Aligned_cols=110  Identities=20%  Similarity=0.223  Sum_probs=69.5

Q ss_pred             CeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe-CCCC--eEE
Q 009614          390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRC--QVV  464 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd-~~~~--~~~  464 (531)
                      .+...++++++ .++... .++.-.||-...+...........++.-.|++ ++...+....+...+++. ...+  ..+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            68899999999 444433 33333444444444333332344788889999 777777777677777774 3333  222


Q ss_pred             --EecCCCCceEEEEEccCCCEEEEEe---CCCcEEEEeCC
Q 009614          465 --DYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIK  500 (531)
Q Consensus       465 --~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~iwd~~  500 (531)
                        .+......|+.+.++|||..++...   .++.|.+--+.
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence              2332233899999999999887765   35677776553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.12  E-value=4.4  Score=38.91  Aligned_cols=119  Identities=12%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             eEEEEcCCC--eEEEEeCCCc-EEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCC
Q 009614          392 LDLSWSKNG--FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRR  460 (531)
Q Consensus       392 ~~l~~sp~~--~l~s~s~Dg~-V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~  460 (531)
                      ..|+++|.-  -++.+-.-|+ ..++|....+...++.   ....---=+|+| |+.+|++.-.|     |.|-|||.+.
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence            356777765  4555555555 5688888877766653   111222346999 99999886544     6899999986


Q ss_pred             Ce--EEEecCCCCceEEEEEccCCCEEEEEeC------------------CCcEEEEeCCCCeEEEEeeee
Q 009614          461 CQ--VVDYTDIREIVSAVCYCPDGKGGIVGTM------------------TGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       461 ~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~------------------dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +-  +-.+..|.-....+.|.+||+.++++..                  .-.+.+.|..+|+++++..++
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp  220 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP  220 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence            42  3357778778889999999999988643                  123566777778877766544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.78  E-value=0.69  Score=50.69  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             EcCCC-eEEEEeCCCcEEEEECC-----CCeEEEEee-cC-CceEEEEEeeC--------CCCEEEEEeC-CCeEEEEeC
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVG-----IDRCLRVFS-HN-NYVTSVAFNPV--------DDNYFISGSI-DGKVRIWEV  458 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~-----~~~~l~~~~-h~-~~V~sv~fsp~--------d~~~l~sgs~-Dg~I~Iwd~  458 (531)
                      .+||| .++.++.||.++.|.+.     .-.|+..+. |. .+-.|.-++..        .-.++++++. ...+++|..
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            78999 99999999999998764     223444443 43 33333323320        0124455543 456888888


Q ss_pred             CCCeEEEecCCCCceEEEEEccCCCE------------EEEEeCCCcEEEEeC
Q 009614          459 RRCQVVDYTDIREIVSAVCYCPDGKG------------GIVGTMTGNCRFYDI  499 (531)
Q Consensus       459 ~~~~~~~~~~~~~~v~~v~~spdg~~------------l~sgs~dg~I~iwd~  499 (531)
                      ...+++ +....+.|..|. -+||..            ++.-+-++.|.+|.-
T Consensus       323 a~w~Cl-l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  323 APWQCL-LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             cchhhh-hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            776665 222334444444 333321            234555777878753

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.67  E-value=1.4  Score=29.33  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=26.5

Q ss_pred             CceEEEEEccCC---CEEEEEeCCCcEEEEeCCCC
Q 009614          471 EIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       471 ~~v~~v~~spdg---~~l~sgs~dg~I~iwd~~~~  502 (531)
                      +.|.++.|+|+.   .+|+.+-.-|.|+|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999854   48888888899999999964

It contains a characteristic DLL sequence motif.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.65  E-value=23  Score=38.46  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             CC-eEEEEeCCCc-----EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC------eEEEEeCCCCeEEEe
Q 009614          399 NG-FLLSSSADKT-----VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------KVRIWEVRRCQVVDY  466 (531)
Q Consensus       399 ~~-~l~s~s~Dg~-----V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg------~I~Iwd~~~~~~~~~  466 (531)
                      +| ..+.|+.||.     |-.||..+.+.-..-.......+......++.+.++|+.++      +|..||..+.+....
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            34 7778888754     77788877665444433334444444443788888888664      577888888765532


Q ss_pred             cCC---CCceEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCeEEEE
Q 009614          467 TDI---REIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIKDNQLYQQ  507 (531)
Q Consensus       467 ~~~---~~~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~~~~l~~~  507 (531)
                      ..-   ..... ++ .-++.+.++|+.|+.     |..||..+.+...-
T Consensus       460 ~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  460 APMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             CCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            211   11111 22 236778888888873     78899888776543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.58  E-value=3.1  Score=48.00  Aligned_cols=74  Identities=16%  Similarity=0.153  Sum_probs=46.1

Q ss_pred             ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      .-|..++.+..+.....++.+..-+.+-+|+.........+.-.+    ..+.+ ++..++++..||.+..||...++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  195 SLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG----QLESR-DGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc----ccCcc-CCceEEEEEecCCEEeeecCCCce
Confidence            334455555555444444555556667777655444443332111    11166 899999999999999999998754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.28  E-value=13  Score=37.89  Aligned_cols=65  Identities=5%  Similarity=0.038  Sum_probs=35.8

Q ss_pred             cccceeeeCCCCeEEeee-----------cCC-eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          237 RHGSATLKPGDHELTLGQ-----------RMR-RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs-----------~dg-~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      ....++|.++|+++++-.           ..+ +|.+++-.+..-...   ....+...-.....|++.++| +++ +..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~   89 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG-VYV-ATP   89 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC-EEE-eCC
Confidence            344689999999887742           223 777775432211110   111232233456889999888 444 444


Q ss_pred             CC
Q 009614          305 DG  306 (531)
Q Consensus       305 Dg  306 (531)
                      ..
T Consensus        90 ~~   91 (367)
T TIGR02604        90 PD   91 (367)
T ss_pred             Ce
Confidence            43

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.22  E-value=44  Score=37.77  Aligned_cols=68  Identities=15%  Similarity=0.081  Sum_probs=50.8

Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec----CC----------------CCceEEEEEccCCCEEE
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DI----------------REIVSAVCYCPDGKGGI  486 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~----~~----------------~~~v~~v~~spdg~~l~  486 (531)
                      ....|.+|+... -+.+++..-.||+|.++|..+.+.+...    ..                -..+..++|||.+..++
T Consensus       258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v  336 (753)
T PF11635_consen  258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV  336 (753)
T ss_pred             cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence            446677888776 6778999999999999999886544222    11                11334588999999999


Q ss_pred             EEeCCCcEE
Q 009614          487 VGTMTGNCR  495 (531)
Q Consensus       487 sgs~dg~I~  495 (531)
                      .-..+|.+.
T Consensus       337 ~~~~~~~~~  345 (753)
T PF11635_consen  337 QIDEDGKTK  345 (753)
T ss_pred             EEecCCCce
Confidence            999999866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.04  E-value=22  Score=34.13  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=41.8

Q ss_pred             cccceeeeCCCCeEEeee---cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          237 RHGSATLKPGDHELTLGQ---RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs---~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      ...+.++++++..+|.-.   ....++++.........        +.+  ..+..-.|++++...+....+...+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------ccC--CccccccccCCCCEEEEEcCCCceEEEE
Confidence            345689999999887654   44556666554322211        122  3677889999987666666666666664

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=88.75  E-value=0.073  Score=57.84  Aligned_cols=64  Identities=20%  Similarity=0.341  Sum_probs=46.9

Q ss_pred             eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEE-----------EccCCCEEEEEeCCCcEEEE
Q 009614          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-----------FSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~-----------fspdg~~Lasgs~Dg~I~iW  311 (531)
                      |-++.-++..+-+++.|++.++.....        ..+.+|...+..++           .+|||+.||.+..||.++.|
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            445666777888899999988774433        12456776666654           58899999999999999988


Q ss_pred             Ecc
Q 009614          312 KVI  314 (531)
Q Consensus       312 d~~  314 (531)
                      .+.
T Consensus       263 Qiy  265 (1283)
T KOG1916|consen  263 QIY  265 (1283)
T ss_pred             eee
Confidence            763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.61  E-value=12  Score=34.58  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=69.4

Q ss_pred             eEEEEcCCCeEEEEeCCCcEEEEECC--CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---C---eEEEE---eCC-
Q 009614          392 LDLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---G---KVRIW---EVR-  459 (531)
Q Consensus       392 ~~l~~sp~~~l~s~s~Dg~V~lwdl~--~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g---~I~Iw---d~~-  459 (531)
                      ..+.-.+.+.|+.+.....|.+|++.  ..+.+..|..-+.|..+.++. .|+|+++--.+   .   .+|+|   ... 
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            33444443434333556779999988  445667777779999999999 89999985332   2   56665   221 


Q ss_pred             -CCeEE--EecC---------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          460 -RCQVV--DYTD---------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       460 -~~~~~--~~~~---------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                       ..+.+  ...+                     ...++.+++..|-.--|++|+ ++++.||.+..+..
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence             11111  1112                     234677888888544456665 56799998875544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.60  E-value=6.5  Score=42.28  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=71.5

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCc--eEE----------EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--VTS----------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~--V~s----------v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      ++.++.++.++.|.-.|..+++.+..+.....  +..          +++   .+..++.++.|+.|.-.|..+++++-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            45777888889999999999999888753221  111          222   235677788899999999999998732


Q ss_pred             cCCCC--ceEEEEEcc---CCCEEEEEeC------CCcEEEEeCCCCeEEEEeeee
Q 009614          467 TDIRE--IVSAVCYCP---DGKGGIVGTM------TGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       467 ~~~~~--~v~~v~~sp---dg~~l~sgs~------dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      .....  .-..+.-+|   ++ .|+++..      +|.|+-+|+.+|+++.++...
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            21110  001111112   44 4555442      689999999999999877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.44  E-value=2.7  Score=39.42  Aligned_cols=74  Identities=12%  Similarity=0.041  Sum_probs=54.5

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-------~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +.+..++.++++-+.+|.+++||+.+.+..+........+.       .....|..+.++.+|.-|++-+ +|....|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            45677899999999999999999998876655422221222       3567899999999998777654 578899986


Q ss_pred             cc
Q 009614          314 IE  315 (531)
Q Consensus       314 ~~  315 (531)
                      .-
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            43

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.09  E-value=14  Score=40.09  Aligned_cols=70  Identities=14%  Similarity=0.275  Sum_probs=46.4

Q ss_pred             CCCCeeEEEEcC--CC-eEEEEeCCCcEEEEECC---------CCeEEEEee---c-CCceEEEEEeeCCCCEEEEEeCC
Q 009614          387 HSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVG---------IDRCLRVFS---H-NNYVTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       387 h~~~I~~l~~sp--~~-~l~s~s~Dg~V~lwdl~---------~~~~l~~~~---h-~~~V~sv~fsp~d~~~l~sgs~D  450 (531)
                      ..+.|.++.|..  ++ .+++.+....|.+|--.         +-.+++.+.   + +.+|.+..|.+ +|.+++.+  +
T Consensus        71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--G  147 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--G  147 (631)
T ss_pred             CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--C
Confidence            456788888864  45 77777778888888531         122344442   3 37899999998 77655544  3


Q ss_pred             CeEEEEeCC
Q 009614          451 GKVRIWEVR  459 (531)
Q Consensus       451 g~I~Iwd~~  459 (531)
                      ..+.|+|-.
T Consensus       148 Nqlfv~dk~  156 (631)
T PF12234_consen  148 NQLFVFDKW  156 (631)
T ss_pred             CEEEEECCC
Confidence            578888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.60  E-value=18  Score=35.35  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=70.1

Q ss_pred             CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe------CCCeEEEEeCCCCeEEEecC-----CCCceEEE
Q 009614          409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS------IDGKVRIWEVRRCQVVDYTD-----IREIVSAV  476 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs------~Dg~I~Iwd~~~~~~~~~~~-----~~~~v~~v  476 (531)
                      ..|++||..+.+....-. -.+.|+.|.|.. +.+++++|.      ....+..||..+.....+..     ..++|+.+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            459999998877665543 567899999986 667777764      35578999999887654443     34778888


Q ss_pred             EEcc-CCC-EEEEEe-CCCc--EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614          477 CYCP-DGK-GGIVGT-MTGN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       477 ~~sp-dg~-~l~sgs-~dg~--I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~  531 (531)
                      .+.. |+. ..+.|. .+|.  |..||=.  +.. .....    --..+..|.++++.|+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs--~W~-~i~~~----~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGS--SWS-SIGSD----ILGSGTTIRGLQVLPL  147 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCC--ceE-ecccc----ccCCCCEEEEEEEEec
Confidence            7743 343 344443 3444  5555432  221 11110    1122467777777664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.35  E-value=28  Score=34.36  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=62.7

Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC-CCCe
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ  462 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~-~~~~  462 (531)
                      .-.+.+..+..+++| ++++++.-....-||-........- .....|..|.|.| ++.+.+.+ ..|.|+.=+. ....
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcc
Confidence            345778888889999 5656555555567776543333222 3578899999999 77766654 8888888772 2222


Q ss_pred             EEE-----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          463 VVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       463 ~~~-----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      ...     .....-.+..++|.+++...++|+ .|.+ +.....|+-
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt  264 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT  264 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc
Confidence            211     111223478999999988777666 4533 555666654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.31  E-value=58  Score=36.93  Aligned_cols=248  Identities=11%  Similarity=0.128  Sum_probs=115.6

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc-
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-  319 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~-  319 (531)
                      ...++++...+.|..+|.+...-+.-.....+...+..++.+...-..|+..-++| .|.+|+.-|-=++-.+.+.... 
T Consensus       263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~g  341 (1096)
T KOG1897|consen  263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVG  341 (1096)
T ss_pred             ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCC
Confidence            35677888888999999887765552222222222333455666666777777666 7888888776666665443221 


Q ss_pred             ------cceecCCCCCeeEEEeecCCcceeeeecccccccccccc-ccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          320 ------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       320 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                            .++... .++.-+.          .++.+.......... ....++...+.-... .+.+.....+.| -..++
T Consensus       342 sy~~ilet~~NL-gPI~Dm~----------Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi-~I~e~A~i~l~G-ikg~w  408 (1096)
T KOG1897|consen  342 SYVVILETFVNL-GPIVDMC----------VVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI-GIDELASIDLPG-IKGMW  408 (1096)
T ss_pred             chhhhhhhcccc-cceeeEE----------EEeccccCCceEEEEeCCCCCCcEEEEeccc-ccceeeEeecCC-cccee
Confidence                  111110 1111111          111111011111111 122233333332211 111112223333 34556


Q ss_pred             EEE--EcCC--CeEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          393 DLS--WSKN--GFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       393 ~l~--~sp~--~~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      .+.  +.++  .+|+.+--+- -++..+... ...+.  ........+..+-..++.|+=... ..||+++-. +..-.|
T Consensus       409 ~lk~~v~~~~d~ylvlsf~~e-Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W  484 (1096)
T KOG1897|consen  409 SLKSMVDENYDNYLVLSFISE-TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEW  484 (1096)
T ss_pred             EeeccccccCCcEEEEEeccc-eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcc
Confidence            665  4333  2444443333 344444332 11111  122333444444434444433332 357777765 333345


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ..... ++....+.+...++.++.++.+...++..+.+.+.
T Consensus       485 ~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~  524 (1096)
T KOG1897|consen  485 RPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV  524 (1096)
T ss_pred             cCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccceeee
Confidence            44433 34444444555777887778787778877764443

>PRK13684 Ycf48-like protein; Provisional

Probab=86.95  E-value=33  Score=34.45  Aligned_cols=106  Identities=10%  Similarity=0.108  Sum_probs=60.1

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      ..++++.+.+++.++..+..|.+++=....+..-....     ....+..+.+.| ++..+++| .+|.|. .....++-
T Consensus       215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~t  291 (334)
T PRK13684        215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKT  291 (334)
T ss_pred             ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCC
Confidence            46778888888844444556766532233333222111     124578899998 66655554 566554 34444333


Q ss_pred             EEe----cCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          464 VDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       464 ~~~----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      ...    .......+.+.|..+++.+++| ..|.|--|+
T Consensus       292 W~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~  329 (334)
T PRK13684        292 WEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV  329 (334)
T ss_pred             CeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence            221    2233467888888777765554 578777665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=86.61  E-value=27  Score=35.49  Aligned_cols=106  Identities=10%  Similarity=0.081  Sum_probs=55.7

Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEee-CCCCEEEEEe----------------------C
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP-VDDNYFISGS----------------------I  449 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp-~d~~~l~sgs----------------------~  449 (531)
                      .++|+. .++-......|+-.|+.+.+....+. ....+-...|.. .++..++-.-                      -
T Consensus        87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p  166 (386)
T PF14583_consen   87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP  166 (386)
T ss_dssp             EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred             EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence            344555 44434445677777887776655555 344444455542 2444433211                      1


Q ss_pred             CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCc-----EEEEeCC
Q 009614          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIK  500 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~  500 (531)
                      ...|.--|+.+++...+......+..+.|+|....+++-+..|-     -|||-++
T Consensus       167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence            12455667888877766677778889999997766666555441     3666543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.74  E-value=39  Score=33.40  Aligned_cols=107  Identities=12%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             CCCCeeEEEEcCCCeEEEEeCCCcEEEEECC-CCeEEEE----ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRV----FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       387 h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~-~~~~l~~----~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ....|..|.|.|++.|......|.|+.=+.. .......    .. ....+..++|.+ +...+++|+. |.+ +.....
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l-~~S~Dg  261 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTL-LVSTDG  261 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-E-EEESST
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccE-EEeCCC
Confidence            3567899999999955555588888887722 1111111    11 223478999998 7777776654 433 334455


Q ss_pred             CeEEE----ecCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          461 CQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       461 ~~~~~----~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw  497 (531)
                      ++--.    .......++.|.|.++.+.+|.|. +|.|--|
T Consensus       262 GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G~ll~~  301 (302)
T PF14870_consen  262 GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DGVLLRY  301 (302)
T ss_dssp             TSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TTEEEEE
T ss_pred             CccceECccccCCCCceEEEEEcCCCceEEECC-CcEEEEe
Confidence            54332    223455688999987766666654 7776544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.68  E-value=23  Score=32.61  Aligned_cols=90  Identities=18%  Similarity=0.304  Sum_probs=54.0

Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecC-CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee----------
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----------  426 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~----------  426 (531)
                      +...+...+..-+++.+....+...++.+. -..++-+.|-.....+-.=.+..|...|..+|+.+..+.          
T Consensus       144 imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~  223 (262)
T COG3823         144 IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL  223 (262)
T ss_pred             EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence            444555566667777777666655555552 234555666432233333344556666777777666542          


Q ss_pred             ---cCCceEEEEEeeCCCCEEEEE
Q 009614          427 ---HNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       427 ---h~~~V~sv~fsp~d~~~l~sg  447 (531)
                         +.+-.+.|++.|..++++++|
T Consensus       224 ~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         224 DKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccccceeecCcCCeEEEec
Confidence               445678999999555677776

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.67  E-value=14  Score=37.93  Aligned_cols=152  Identities=15%  Similarity=0.172  Sum_probs=80.4

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccc--ee
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG--FD  323 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~--~~  323 (531)
                      |.+..+.+...|.+.-|-++........-    --....++|.+++||+|.+.||.--.|++|.+.+....+....  ..
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiS----fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~  107 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPIS----FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE  107 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCce----eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence            44444444455667777766544332211    1123567999999999999999999999999999844332221  11


Q ss_pred             cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---
Q 009614          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---  400 (531)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---  400 (531)
                      ........+-|.+.+...++.+...+              ..++...+.     ...++..+.|...|+-..|.++.   
T Consensus       108 ck~k~~~IlGF~W~~s~e~A~i~~~G--------------~e~y~v~pe-----krslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  108 CKTKNANILGFCWTSSTEIAFITDQG--------------IEFYQVLPE-----KRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             hccCcceeEEEEEecCeeEEEEecCC--------------eEEEEEchh-----hhhhhhhhhcccCccEEEEccccceE
Confidence            22222223333333333333222111              111111111     11244456677888888888876   


Q ss_pred             eEEEEeCCCcEEEEECCCCe
Q 009614          401 FLLSSSADKTVRLWQVGIDR  420 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~  420 (531)
                      +|+++-..+++.=+.++++.
T Consensus       169 LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  169 LLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             eeeccccccccccEEEeece
Confidence            33333245555555554443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.98  E-value=7.5  Score=40.38  Aligned_cols=60  Identities=12%  Similarity=0.248  Sum_probs=47.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ...|+|+++..|-|++||.-..+.- .+.+....|..|..+.+|++|++.+ ...+.+-|+.
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            4568999999999999997654433 3667788899999999999888777 4567777764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.60  E-value=15  Score=38.49  Aligned_cols=96  Identities=14%  Similarity=0.187  Sum_probs=56.2

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (531)
                      -.|..|..++.|..++-+|.+|.+.++=.+....-..+......+.|-.+....                          
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~--------------------------  157 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE--------------------------  157 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc--------------------------
Confidence            357788899999999999999976655332222222222222222222211110                          


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEE
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCL  422 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~~l  422 (531)
                                     .+.+-. ..-.+...+|+|+.    .|+.-+.|.+||+||+...+.+
T Consensus       158 ---------------~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  158 ---------------RFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             ---------------eeeccC-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence                           011111 22346778899975    7888889999999999754433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.46  E-value=19  Score=36.15  Aligned_cols=103  Identities=14%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE---EEEee-----cCCceEEEEEeeC---CCCEEEEEeCC--------
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVFS-----HNNYVTSVAFNPV---DDNYFISGSID--------  450 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~---l~~~~-----h~~~V~sv~fsp~---d~~~l~sgs~D--------  450 (531)
                      ..+.|+|.|+|.++.+...|.|++++ ..+..   +....     .......++++|.   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999666677799999999 44433   22221     3456799999992   13333333321        


Q ss_pred             CeEEEEeCCCC-------eEE-E-ec---CCCCceEEEEEccCCCEEEEEeCCCc
Q 009614          451 GKVRIWEVRRC-------QVV-D-YT---DIREIVSAVCYCPDGKGGIVGTMTGN  493 (531)
Q Consensus       451 g~I~Iwd~~~~-------~~~-~-~~---~~~~~v~~v~~spdg~~l~sgs~dg~  493 (531)
                      ..|.-|.....       +.+ . ..   ........|.|.|||.+.++.+..+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            23444444332       111 1 12   23345677999999977776665443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=83.29  E-value=25  Score=34.60  Aligned_cols=106  Identities=8%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             EEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC-
Q 009614          413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-  491 (531)
Q Consensus       413 lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-  491 (531)
                      ++|+.+++.+..=  -....+-.|+  ++++.++-+..|.|.-+|..+++........+-...++|.  |.++++|-.. 
T Consensus       189 vidv~s~evl~~G--LsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~  262 (335)
T TIGR03032       189 VIDIPSGEVVASG--LSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKL  262 (335)
T ss_pred             EEEeCCCCEEEcC--ccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccc
Confidence            3566666554221  1112234565  6888889899999999999988776656666677888887  8888776542 


Q ss_pred             -------------------CcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          492 -------------------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       492 -------------------g~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                                         --|.+.|+++|..+.-+++.-.      ...|..+++-|
T Consensus       263 R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~------v~EifdV~vLP  314 (335)
T TIGR03032       263 RESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV------IEEIYDVAVLP  314 (335)
T ss_pred             cCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc------eeEEEEEEEec
Confidence                               1267889999998887765422      24556665544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PHA02790 Kelch-like protein; Provisional

Probab=82.96  E-value=69  Score=34.02  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=52.4

Q ss_pred             eEEEEeCC---CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC---CCc
Q 009614          401 FLLSSSAD---KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI---REI  472 (531)
Q Consensus       401 ~l~s~s~D---g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~---~~~  472 (531)
                      ..+.|+.+   ..+..||..+.+....-.  ..-.-.+++. - ++.+.+.|   |.+.+||..+.+-......   ...
T Consensus       365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~-~-~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~  439 (480)
T PHA02790        365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV-F-GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN  439 (480)
T ss_pred             EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE-E-CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence            44455543   346788887766544322  1111112222 2 56666666   3578899887765432221   112


Q ss_pred             eEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 009614          473 VSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQL  504 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~d-----g~I~iwd~~~~~l  504 (531)
                      ...+  .-+|+..++|+.+     ..+..||..+++-
T Consensus       440 ~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        440 PELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             cEEE--EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            2222  2377888888764     3577888877654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.02  E-value=11  Score=33.75  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             CCeeEEEEcCCC-------eEEEEeCCCcEEEEECCC
Q 009614          389 SEVLDLSWSKNG-------FLLSSSADKTVRLWQVGI  418 (531)
Q Consensus       389 ~~I~~l~~sp~~-------~l~s~s~Dg~V~lwdl~~  418 (531)
                      ..|..++|+|.|       +|++.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999954       789999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.66  E-value=5.3  Score=43.22  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             CCCCeEEeeecCCeEEEEeCCCCc---cccccc-cc----ceEEc-----------ccCCCEEEEEEcc----CCCEEEE
Q 009614          245 PGDHELTLGQRMRRVRVHPVKKQS---RELSSL-YT----GQEFL-----------AHEGSILTMKFSL----DGQYLAS  301 (531)
Q Consensus       245 pdg~~lasgs~dg~I~vwd~~~~~---~~~~~~-~~----~~~l~-----------~H~~~I~~l~fsp----dg~~Las  301 (531)
                      ++...++.+..||.+.........   ...... +.    .+.+.           .-.+.+..++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466778888888888777666411   111000 00    00011           1124456666666    6779999


Q ss_pred             EeCCCcEEEEEcccCccccceecC
Q 009614          302 GGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      .+.|+++|+||+.+++++......
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEETT
T ss_pred             EeCCCeEEEEECCCCeEEEEeccc
Confidence            999999999999999987666544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.49  E-value=0.25  Score=50.45  Aligned_cols=95  Identities=13%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             CCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEE-ee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV-FS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       388 ~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~-~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ++...+++|..++  .++.+-..+.+.+||+.+...... +.  |....  +.|++ ....++.|-..|.+.|++..+.+
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR  150 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR  150 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence            4456677888777  666777789999999976432211 11  33322  67888 77888888899999999999877


Q ss_pred             EEEecC-CCCceEEEEEccCCCEE
Q 009614          463 VVDYTD-IREIVSAVCYCPDGKGG  485 (531)
Q Consensus       463 ~~~~~~-~~~~v~~v~~spdg~~l  485 (531)
                      ..-..+ |...+++++|.+.+..+
T Consensus       151 ~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  151 RIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             hhhhhcccccceeEEEecccceee
Confidence            665444 88999999999987543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.19  E-value=3.2  Score=44.74  Aligned_cols=81  Identities=12%  Similarity=0.205  Sum_probs=56.5

Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      ....+++|+-+| .++-++.++.||.|++|+....+..+......+-..+.|...|  |++++.|..+.-|.- +|-.++
T Consensus        13 ~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~-dgvvqq   88 (1636)
T KOG3616|consen   13 EDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE-DGVVQQ   88 (1636)
T ss_pred             ccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec-cCcchh
Confidence            456688999999 8999999999999999998765544333333344556666554  677777888877863 354555


Q ss_pred             Eeeee
Q 009614          507 QNQIC  511 (531)
Q Consensus       507 ~~~~~  511 (531)
                      ++...
T Consensus        89 qfdyn   93 (1636)
T KOG3616|consen   89 QFDYN   93 (1636)
T ss_pred             hcccc
Confidence            55433

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=80.04  E-value=79  Score=32.82  Aligned_cols=147  Identities=13%  Similarity=0.235  Sum_probs=88.1

Q ss_pred             ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC---C-C-eEEEEeCCCcEEEEECCC--C------
Q 009614          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---N-G-FLLSSSADKTVRLWQVGI--D------  419 (531)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp---~-~-~l~s~s~Dg~V~lwdl~~--~------  419 (531)
                      .....+.++..+.+.++.+.........+..-..-..+|..|..-+   . . ..++-=.-+.+.+|.+..  +      
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3445567788888888888543332222222223456788877543   1 1 333334556778887731  1      


Q ss_pred             --eEEEEeecC--CceEEEEEeeC---C-CCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614          420 --RCLRVFSHN--NYVTSVAFNPV---D-DNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (531)
Q Consensus       420 --~~l~~~~h~--~~V~sv~fsp~---d-~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d  491 (531)
                        +....+.|.  .....++.-|.   . ..+|.+-+.||.+.+|+-............--...++|.|.-..+++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence              111222333  23344444442   2 468888999999999998876544433333344557888888889999888


Q ss_pred             CcEEEEeC
Q 009614          492 GNCRFYDI  499 (531)
Q Consensus       492 g~I~iwd~  499 (531)
                      ..+.-|..
T Consensus       196 ~~l~~Yky  203 (418)
T PF14727_consen  196 WTLECYKY  203 (418)
T ss_pred             eeEEEecH
Confidence            88888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	531
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-12
2h9l_A	329	Wdr5delta23 Length = 329		1e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		9e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		3e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		7e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 143
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 501 DNQ 503
             Q
Sbjct: 204 SGQ 206

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 141
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 501 DNQ 503
             Q
Sbjct: 202 SGQ 204

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 DNQ 503
             Q
Sbjct: 186 SGQ 188

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 DNQ 503
             Q
Sbjct: 186 SGQ 188

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 125
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 501 DNQ 503
             Q
Sbjct: 186 SGQ 188

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 124
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 501 DNQ 503
             Q
Sbjct: 185 SGQ 187

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 120
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 501 DNQ 503
             Q
Sbjct: 181 SGQ 183

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 501 DNQ 503
             Q
Sbjct: 180 SGQ 182

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 119
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 501 DNQ 503
             Q
Sbjct: 180 SGQ 182

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 136
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 501 DNQ 503
             Q
Sbjct: 197 SGQ 199

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 386 GHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
           GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   N 
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 444 FISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502
            +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D    
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 503 Q 503
           Q
Sbjct: 185 Q 185

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 118
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 501 DNQ 503
             Q
Sbjct: 179 SGQ 181

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 115
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 501 DNQ 503
             Q
Sbjct: 176 SGQ 178

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+  + +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+    +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 384 FQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
             GH   + D++WS +   L+S+S DKT+++W V   +CL+    H+NYV    FNP   
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QS 122
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           N  +SGS D  VRIW+V+    +       + VSAV +  DG   +  +  G CR +D  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 501 DNQ 503
             Q
Sbjct: 183 SGQ 185

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 36/264 (13%)
Query: 264 VKKQSRELSSLYTG----------QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           +KKQ+ +   LY             + L H   +  +KFS DG+YLA+G  + T +V++V
Sbjct: 34  LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRV 92
Query: 314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370
            +     RL      + DP  L  + +  S L           ++               
Sbjct: 93  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI---------RSVCFSPDGKFLATGAE 143
Query: 371 PKVFRLLE----KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF 425
            ++ R+ +    K +   QGH  ++  L +  +G  L+S S D+TVR+W +   +C    
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--------REIVSAVC 477
           S  + VT+VA +P D  Y  +GS+D  VR+W+     +V+  D         ++ V +V 
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263
Query: 478 YCPDGKGGIVGTMTGNCRFYDIKD 501
           +  DG+  + G++  + + +++++
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQN 287

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
           NH   + P  +D +      +L+K ++   ++  P + R ++  LH+   H+S V  + +
Sbjct: 13  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 72
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------YVTSVAFN 437
           S +G  L++  +KT ++++V     +   S ++                   Y+ SV F+
Sbjct: 73  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCYCPDGKGGIVGTMTGNCRF 496
           P D  +  +G+ D  +RIW++   ++V      E  + ++ Y P G   + G+     R 
Sbjct: 133 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 497 YDIKDNQ 503
           +D++  Q
Sbjct: 192 WDLRTGQ 198

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           Q    H  S+  + FS DGQ +AS  +D TV++W              + +   L     
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--------------NRNGQHLQTLTG 342
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
           H S +  +    +     +++  +SD   V L  +  +LL+       GHSS V  +++S
Sbjct: 343 HSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFS 394
Query: 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
            +G  + S+S DKTV+LW         +  H++ V  VAF+P DD    S S D  V++W
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLW 453
Query: 457 EVRRCQVVD-YTDIREIVSAVCYCPDGK 483
             R  Q++   T     V  V + PDG+
Sbjct: 454 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           K  +  + HSS V  +++S +G  + S+S DKTV+LW         +  H++ V  VAF+
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 66
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK 483
           P D     S S D  V++W  R  Q++   T     V  V + PDG+
Sbjct: 67  P-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 111

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H   I+++K++ DG ++ S   +    +W VI    +  F++++T  S +    NH S  
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE-NH-SGD 205
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPK----VFRLLEK-PLHEFQGHSSEVLDLSWS 397
             + VD E +D  K          V+  PK    V+++ EK P  +  GH   +  L ++
Sbjct: 206 GSLGVDVEWVDDDK---------FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 398 -KNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
             N  LLS+S D T+R+W  G       F  H+  + S ++  V D+  IS S+DG VR+
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRL 314
Query: 456 WEVRRCQVVDYTDIREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIK 500
           W +++  ++  + +  + + A     DG+   V  M G    YD+K
Sbjct: 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
           E+ + Y  + F  H   +  ++ + DG  +AS   D TVRVW V   E            
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 330 SCLYF----TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385
            C+ +    + + +S+    +  K        L  S D T  +        L        
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLV 335
Query: 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443
           GH + V  + +   G F+LS + DKT+R+W     RC++   +H ++VTS+ F+     Y
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-Y 394
Query: 444 FISGSIDGKVRIWEVR 459
            ++GS+D  V++WE R
Sbjct: 395 VVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441
            +GH+  V D+S+  +G LL+S SAD T++LW      C+R    H++ V+SV+  P  D
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 442 NYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGN 493
            + +S S D  +++WEV+    V  +T  RE V  V   P+  G ++ + + +
Sbjct: 206 -HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSND 255

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           ++   F+ +GQ +A GG D    ++ +      DG ++  +     +       Q +P  
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVP-- 167
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWS--KNGFLL 403
            D+E    T+ +  S D TCV+      + +     EF  GH+++VL LS +       +
Sbjct: 168 -DQE----TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 404 SSSADKTVRLWQVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-- 459
           S S D TVRLW + I  R +R +  H   + SV F P D   F +GS DG  R++++R  
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG 281
Query: 460 -RCQVVDYTDIRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYD 498
            + QV +    R      IV++V +   G+    G   G+C  +D
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455
           L++ S D+T  LW V   + + +F       H   V S++ N ++ N FISGS D  VR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 456 WEVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
           W++R     V  Y      +++V + PDG+    G+  G CR +D++     Q
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
           G   L+  D ++  G R   +++    K + E   + TG     H GS+L +++  D + 
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIW--DKNTLECKRILTG-----HTGSVLCLQY--DERV 185
Query: 299 LASGGEDGTVRVWKVIEHERLD--------------------------GFDVQD----TD 328
           + +G  D TVRVW V   E L+                             V D    TD
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
            +     + H + +  +D D + I     +  S D T  V        +        GH 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYI-----VSASGDRTIKVWNTSTCEFVRT----LNGHK 296
Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG 447
             +  L + ++  ++S S+D T+RLW +    CLRV   H   V  + F   D+   +SG
Sbjct: 297 RGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSG 352
Query: 448 SIDGKVRIWEV 458
           + DGK+++W++
Sbjct: 353 AYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
           D Q + SG  D T+++W     E             C      H   ++ +  D+  I  
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLE-------------CKRILTGHTGSVLCLQYDERVI-- 186
Query: 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLW 414
              +  SSD T  V       +L   +H    H   VL L ++ NG +++ S D+++ +W
Sbjct: 187 ---ITGSSDSTVRVWDVNTGEMLNTLIH----HCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
Query: 415 QVG--IDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
            +    D  LR  +  H   V  V F   DD Y +S S D  +++W    C+ V
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV 289

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 56  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 115
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 152
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 211
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++ +Q
Sbjct: 212 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------ 327
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386
             PS  Y     L  +  I   K +    +  R                       E  G
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-----------------------ELAG 141
Query: 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445
           H+  +    +  +  +++SS D T  LW +    +      H   V S++  P D   F+
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 446 SGSIDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
           SG+ D   ++W+VR   C+   +T     ++A+C+ P+G     G+    CR +D++ +Q
Sbjct: 201 SGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 99/257 (38%), Gaps = 66/257 (25%)
Query: 267 QSRELSSLYTGQ---EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323
            S  L +L  GQ   +FL H   +L++ FS D + + SGG D  +RVW V          
Sbjct: 89  HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV---------- 138
Query: 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD-LTCVVLPPKVFRLLEKPLH 382
                                    K +   T S    +D ++CV   P     L+ P+ 
Sbjct: 139 -------------------------KGECMHTLSRGAHTDWVSCVRFSPS----LDAPV- 168
Query: 383 EFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVDD 441
                              ++S   D  V++W +   R +  +  H NYVTSV  +P D 
Sbjct: 169 -------------------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DG 208
Query: 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501
           +   S   DG  R+W++ + + +        ++ +C+ P+       T  G  R +D+++
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKG-IRIFDLEN 267
Query: 502 NQLYQQNQICLQGKKKL 518
             +  +     QG KK+
Sbjct: 268 KDIIVELAPEHQGSKKI 284

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           KK  + LS L        H  ++    FS DGQ +AS G D T++V+K    E+L     
Sbjct: 600 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
            + +  C  F+ +  S +     DK    K K    ++                K +H +
Sbjct: 656 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 695
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
             HS +V     +   N  LL++ S D  ++LW +    C   +F H N V    F+P D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 754
Query: 441 DNYFISGSIDGKVRIWEVR 459
           D    S S DG +R+W+VR
Sbjct: 755 DELLASCSADGTLRLWDVR 773

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           KK  + LS L        H  ++    FS DGQ +AS G D T++V+K    E+L     
Sbjct: 607 KKTIKNLSRLVVR----PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
            + +  C  F+ +  S +     DK    K K    ++                K +H +
Sbjct: 663 HEDEVLCCAFSSDD-SYIATCSADK----KVKIWDSATG---------------KLVHTY 702
Query: 385 QGHSSEV--LDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR-VFSHNNYVTSVAFNPVD 440
             HS +V     +   N  LL++ S D  ++LW +    C   +F H N V    F+P D
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 761
Query: 441 DNYFISGSIDGKVRIWEVR 459
           D    S S DG +R+W+VR
Sbjct: 762 DELLASCSADGTLRLWDVR 780

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 111/275 (40%), Gaps = 43/275 (15%)
Query: 255 RMRRVRVHPVKKQSRELSS--LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
           ++  V +H V ++   L    + T +    H   +L M +  D + + S  +DG V VW 
Sbjct: 33  KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
Query: 313 VIEHERLDGFDVQDT-DPSCLYFT---------INHLSQLIPIDVDKEKIDKTKSLRKSS 362
                +     +  T   +C Y           +++   + P+  DK +    K  +KS 
Sbjct: 93  SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK--KKSV 150
Query: 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRC 421
            +                      H++ +   S++ +   +L++S D T  LW V   + 
Sbjct: 151 AM----------------------HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188
Query: 422 LRVF-SHNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVVDYTDIREI-VSAVCY 478
           L+ F  H   V  +   P +  N F+SG  D K  +W++R  Q V   +  E  V++V Y
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 479 CPDGKGGIVGTMTGNCRFYDIKDNQ---LYQQNQI 510
            P G     G+    CR YD++ ++   +Y +  I
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 78/251 (31%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
              H  ++  M   L  + + SG  D T+RVW +                 CL+  + H+
Sbjct: 195 LYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDI-------------ETGQCLHVLMGHV 239
Query: 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-- 397
           + +  +  D  ++     +  + D    V  P+     E  LH  QGH++ V  L +   
Sbjct: 240 AAVRCVQYDGRRV-----VSGAYDFMVKVWDPET----ETCLHTLQGHTNRVYSLQFDGI 290
Query: 398 -------------------------------------KNGFLLSSSADKTVRLWQVGIDR 420
                                                K+  L+S +AD TV++W +   +
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 350
Query: 421 CLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV 476
           CL+       H + VT + FN    N+ I+ S DG V++W+++  +      IR +V+  
Sbjct: 351 CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEF-----IRNLVTLE 402
Query: 477 CYCPDGKGGIV 487
                G GG+V
Sbjct: 403 ---SGGSGGVV 410

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 48/220 (21%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
           +YTGQ FL       ++ +  + + L  GG+D  +          +  F     DP  LY
Sbjct: 55  VYTGQGFLN------SVCYDSEKELLLFGGKDTXIN--------GVPLFATSGEDP--LY 98
Query: 334 FTINHLSQLIPID-----VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
             I H   +  +      V     DKT  + K   L                ++  Q H+
Sbjct: 99  TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL----------------VYNLQAHN 142
Query: 389 SEVLD---LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNY 443
           + V D   +S+S+N FL ++SADKT++LWQ   D+ ++ FS  HN+ V  +A   VDD +
Sbjct: 143 ASVWDAKVVSFSENKFL-TASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV--VDDGH 197
Query: 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG 482
           FIS S DG +++ +     V+  Y      V  +   P+G
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG 237

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           + ++K+S DG +L+ G  +G V ++ V    +L           CL +  + LS      
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSG---- 192
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS 406
                  ++ ++                R+    +   QGHSSEV  L+W  +G  L+S 
Sbjct: 193 ------SRSGAIHHHD-----------VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 407 A-DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRC 461
             D  V++W     I +  +  +HN  V +VA+ P   N   +  G++D ++  W     
Sbjct: 236 GNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 462 QVVDYTDIREIVSAVCYCPDGK 483
             V+  D    V+++ + P  K
Sbjct: 295 ARVNTVDAGSQVTSLIWSPHSK 316

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI---EHERLDGFDVQD 326
           +L++  + + F+ H   +L++ FSLD + + S   D T+++W  +   ++   +G +   
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQ 385
              SC+ F+ N L   I              +  S D T      KV+ L    L     
Sbjct: 518 DWVSCVRFSPNTLQPTI--------------VSASWDKTV-----KVWNLSNCKLRSTLA 558
Query: 386 GHSSEVLDLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
           GH+  V  ++ S +G L +S   D  V LW +   + L     N+ + ++ F+P  + Y+
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP--NRYW 616
Query: 445 ISGSIDGKVRIWEVRRCQVVD 465
           +  + +  ++IW++    +V+
Sbjct: 617 LCAATEHGIKIWDLESKSIVE 637

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 93  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 138
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 194
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 252
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 253 GIKVFSLDPQYLVD--DLR 269

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 51  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 111 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
           T Q F+ H+  ++++        + SG  D T++VW +                 CL   
Sbjct: 99  TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--------------KGQCLATL 144
Query: 336 INH---LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
           + H   +SQ+  +  +K   D    +   +D          F++      +F GH+S + 
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIGHNSNIN 200
Query: 393 DLSWSKNGFLLSSSA-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG 451
            L+ S +G L++S+  D  + LW +   + +   S  + V S+AF+P  + Y+++ +   
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP--NRYWLAAATAT 258
Query: 452 KVRIWEVRRCQVVDYTDIR 470
            ++++ +    +VD  D+R
Sbjct: 259 GIKVFSLDPQYLVD--DLR 275

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQ-VGIDR-CLRVFSHNNYVTSVAFNPVD 440
           F GH+ +VL +++S  N  ++S S DKT++LW  +G+ +  ++  SH+ +V+ V F+P  
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 441 DNYFI-SGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
            N  I S   D  V++W +  C++  ++      ++ V   PDG     G   G    +D
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 499 IKDNQ 503
           + + +
Sbjct: 244 LNEGK 248

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 384 FQGHSSEVLDLSWSK-NGFLLSSSADKTVRLWQ-VGIDR-CLRVFSHNNYVTSVAFNPVD 440
           F GH+ +VL +++S  N  ++S S DKT++LW  +G+ +  ++  SH+ +V+ V F+P  
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 441 DNYFI-SGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
            N  I S   D  V++W +  C++  ++      ++ V   PDG     G   G    +D
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 499 IKDNQ 503
           + + +
Sbjct: 221 LNEGK 225

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 37/234 (15%)
Query: 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354
           D   L SG  D TV +WK+ E E+   F +    P       NH        V    + +
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGI----PHKALTGHNHF-------VSDLALSQ 86
Query: 355 TKSLRKSSDLTCVVLPPKVFRLLE----KPLHEFQGHSSEVLDLSWSK-NGFLLSSSADK 409
                 SS         K  RL +         F GH SEV  +++S  N  +LS+ A++
Sbjct: 87  ENCFAISSSWD------KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 410 TVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDN---------YFISGSIDGKVRIW 456
            ++LW + +  C        +H+++V+ V ++P+  +         YF S   DG++++W
Sbjct: 141 EIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199
Query: 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510
                    +      V+ +   P+GK    G        +DI  N  Y Q + 
Sbjct: 200 NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL-NLTYPQREF 252

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436
           +K L +  GH   V  L ++  G L+S S D+TVR+W +    C  VF  HN+ V  +  
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 437 NPVDD-NYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
               +  Y ++GS D  + +W++ +   V D+ +  +    V + P+     VG + G+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGH 269

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436
           +K L +  GH   V  L ++  G L+S S D+TVR+W +    C  VF  HN+ V  +  
Sbjct: 152 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 437 NPVDD-NYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
               +  Y ++GS D  + +W++ +   V D+ +  +    V + P+     VG + G+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGH 269

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437
           P+  F+GHS  V D + + +G + LS+S DKT+RLW V      + F  H + V SV  +
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484
               +  ISGS D  +++W ++   +       + VS V   P+ K 
Sbjct: 117 K-KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 385 QGHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443
           Q H+  VLD+ WS +G  + ++S DKT ++W +  ++ +++  H+  V ++ +     NY
Sbjct: 83  QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNY 141
Query: 444 --FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
              ++GS D  ++ W+ R    +    + E     CYC D
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE----RCYCAD 177

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 29/210 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 205
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 206 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 406 SADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W           L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
                +   D    V ++ + P  K  I G
Sbjct: 309 CSGACLSAVDAHSQVCSILWSPHYKELISG 338

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 29/210 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 216
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 217 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 406 SADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W           L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 260 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
                +   D    V ++ + P  K  I G
Sbjct: 320 CSGACLSAVDAHSQVCSILWSPHYKELISG 349

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 29/210 (13%)
Query: 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPID 346
           I ++ +  +G YLA G     V++W V + +RL       T  S    +++  S ++   
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----TSHSARVGSLSWNSYILSSG 125
Query: 347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405
                I                      R+ E  +    GHS EV  L W+ +G  L S 
Sbjct: 126 SRSGHIHHHD-----------------VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 406 SADKTVRLWQV----GIDRCLRVFS-HNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEV 458
             D  V +W      G    L+ F+ H   V +VA+ P   N   +  G+ D  +RIW V
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
                +   D    V ++ + P  K  I G
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYKELISG 258

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-TVRLWQV-----GIDRCLRVFSHNNYV 431
           EKP+   Q   S+  DL WS N  +++ + D  ++ L+        I+   R  +H++ V
Sbjct: 58  EKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
            +V FN   DN   SG  +G++ IW++ +C
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 57/190 (30%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
            HE ++ ++ F   GQ LAS  +D TVR+W+        G     +DPS  +  I  LS 
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS--WKCICTLSG 249
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG 400
                                                        HS  + D++W +  G
Sbjct: 250 F--------------------------------------------HSRTIYDIAWCQLTG 265
Query: 401 FLLSSSADKTVRLWQ--VGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSID 450
            L ++  D  +R++Q     D     FS        H+  V  VA+NP +     S S D
Sbjct: 266 ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Query: 451 GKVRIWEVRR 460
           G+V  W+ +R
Sbjct: 326 GEVAFWKYQR 335

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 265

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 379 KPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHN 428
           +P    +GH  E   LSW+ N  G+LLS+S D T+ LW +         ID       H 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
             V  VA++ + ++ F S + D K+ IW+ R 
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 267

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 401 FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           ++LS S D TV+LW    +  L + F  H ++V  VAFNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 483 KGGIVGTMTGNCRFY 497
              +        R Y
Sbjct: 309 ARLLTTDQKSEIRVY 323

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 483 KGGIVGTMTGNCRFY 497
              +        R Y
Sbjct: 309 ARLLTTDQKSEIRVY 323

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----RCQVVDYTDIREIVSAVCYCPDG 482
           H   VT VA NP  D +  + S+D  V+IW++R    +   +     R  V+A C+ PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRC 421
           +VLP      ++K +    GH++ VLD++W    +  + S S D TV +W++   G+   
Sbjct: 60  LVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Query: 422 LR-----VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
           LR     +  H   V  VA++P   N  +S   D  + +W+V
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 390 EVLDLSWSKNGFLL---------------SSSADKTVRLWQVGIDRCLRVFSHNNY-VTS 433
           E LDL WS  G  L               SSS D  +RLW +   + ++          +
Sbjct: 68  ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTG 492
           +AF+P D  Y  +G+  GKV I+ V   +     D R + + ++ Y PDGK    G + G
Sbjct: 128 LAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 493 NCRFYDIKDNQL 504
               +DI   +L
Sbjct: 187 IINIFDIATGKL 198

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC---------LY 333
           H+  + T+    DG    SGG+D +V+VW + +   L  ++   ++ +C         ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDL-TCVVLPPK---VFRL-----------LE 378
            +     +++  D  K K         S  + T V   P+    F             ++
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 379 KP--LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
            P        HS  +  L++S +   FL S S D TV +         R  SH ++VT V
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV 317
Query: 435 AFNPVDDNYFISGSIDGKV 453
           A++P+D + F +   D KV
Sbjct: 318 AWSPLDHSKFTTVGWDHKV 336

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 403 LSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
           +S   D +V++W +     L+ + +H++ V  VA  P  D  F+S   DG++ +W+ R+ 
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 462 QV---VDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQLYQQNQICLQ 513
           +    +D+     I ++V + P+       G  TGN    +IK+    Q + +  Q
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ 270

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 386 GHSSEVLDLSWS--KNGFLLSSSADKTVRLWQV---GIDRCLR-----VFSHNNYVTSVA 435
           GH++ VLD++W    +  + S S D TV +W++   G+   LR     +  H   V  VA
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 436 FNPVDDNYFISGSIDGKVRIWEV 458
           ++P   N  +S   D  + +W+V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
            +GH  E   LSW+ N  G LLS+S D TV LW +         +D       H+  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
           VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTR 260

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 384 FQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTS 433
            +GH  E   LSW+ N  G LLS+S D TV LW +         +D       H+  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVR 459
           VA++ + ++ F S + D K+ IW+ R
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTR 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	531
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.77
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.75
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.74
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.73
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.72
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.71
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.68
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.67
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.53
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.41
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.41
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.37
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.23
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.21
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.19
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.18
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.18
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.14
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.13
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.96
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.93
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.88
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.87
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.86
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.85
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.8
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.74
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.72
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.67
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.47
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.37
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.36
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.29
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.0
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.91
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.79
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.78
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.78
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.78
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.77
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.65
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.38
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.29
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.29
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.28
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.22
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.2
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.14
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.02
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.96
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.88
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.81
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.6
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.44
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.44
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.77
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.63
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.33
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.0
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.74
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.29
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.2
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.17
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.21
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.98
3ott_A	758	Two-component system sensor histidine kinase; beta	92.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.95
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.35
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.34
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.29
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	91.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.07
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.43
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.41
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.81
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.98
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.73
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	85.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	83.49
3ott_A	758	Two-component system sensor histidine kinase; beta	83.4
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	82.59
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.73
2rr3_B	47	OSBP, oxysterol-binding protein 1; lipid transport	80.14

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6e-35  Score=289.46  Aligned_cols=268  Identities=18%  Similarity=0.220  Sum_probs=226.8

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      .++..|.+.|.+++|+|++++|++|+.||.|++||+.+..       ....+.+|..+|.+++|+|++++|++|+.|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            3577888999999999999999999999999999997543       334678899999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+.+++.+..+..+...+.++.+.+...                ..++++.++.+.+|+....   ......+.+|.
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~sgs~D~~v~lWd~~~~---~~~~~~~~~h~  140 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP----------------YVLSGSDDLTVKLWNWENN---WALEQTFEGHE  140 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEEGGGT---TEEEEEECCCC
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCC----------------EEEEECCCCeEEEEECCCC---cchhhhhcccC
Confidence            9999999998888888887777777765432                2356778889999986542   12356788999


Q ss_pred             CCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          389 SEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       389 ~~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      ..|.+++|+|. + +|++|+.|++|++||++++.+...+.  |...+..+.|+|. ++.+|++|+.|++|+|||++++++
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~  220 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence            99999999994 5 89999999999999998877666553  6688999999873 567999999999999999999987


Q ss_pred             E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       464 ~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      + .+.+|...|++++|+|++++|++|+.||+|+|||+.+++++..+...        ...+..++|.|
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~  280 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSWCIATHP  280 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--------SSSEEEEEECT
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--------CccEEEEEECC
Confidence            7 57889999999999999999999999999999999999988765432        34566666655

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-35  Score=303.37  Aligned_cols=266  Identities=20%  Similarity=0.295  Sum_probs=232.6

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...+.+++|+|++.++++|+.||.|+|||+.++.       ....+.+|.+.|++++|+|++++|++|+.||+|+
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK  175 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            467788999999999999999999999999999998544       2356889999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +||+.+++.+..+..+...+.++.+.++..                ..++++.++.+.+|+...    ...+..+.+|..
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~----------------~l~s~s~D~~i~~wd~~~----~~~~~~~~~h~~  235 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGD----------------HIVSASRDKTIKMWEVQT----GYCVKTFTGHRE  235 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEETTT----CCEEEEEECCSS
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCC----------------EEEEEeCCCeEEEEECCC----CcEEEEEeCCCc
Confidence            999999988888887777777777765432                235667888999998865    345778899999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCC-------------------CCEEEEEe
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD-------------------DNYFISGS  448 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d-------------------~~~l~sgs  448 (531)
                      .|.++.++|++ +|++|+.|++|++||+.++++...+. |...|.+++|+|..                   +.+|++|+
T Consensus       236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            99999999999 99999999999999999999988885 99999999999931                   67999999


Q ss_pred             CCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEE
Q 009614          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ  527 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~  527 (531)
                      .|+.|++||+++++++ .+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+.        .|...|++++
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~  387 (410)
T 1vyh_C          316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVTSLD  387 (410)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------CCSSCEEEEE
T ss_pred             CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--------CCCCcEEEEE
Confidence            9999999999999877 578899999999999999999999999999999999988776543        3456899999


Q ss_pred             Eee
Q 009614          528 VVK  530 (531)
Q Consensus       528 f~p  530 (531)
                      |+|
T Consensus       388 ~~~  390 (410)
T 1vyh_C          388 FHK  390 (410)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            987

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=290.40  Aligned_cols=268  Identities=15%  Similarity=0.250  Sum_probs=227.2

Q ss_pred             ccceeeeccccceeeeCC----CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          229 GAMARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspd----g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      +....|.+.|.+++|+|+    +.+|++|+.|++|+||++......     ....+.+|...|.+++|++++.++++++.
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            345568899999999885    668999999999999998754322     22357899999999999999999999999


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      |++|++||+.+++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+...    .+....+
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~----------------~l~~g~~dg~v~i~~~~~----~~~~~~~  160 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ----------------YLATGTHVGKVNIFGVES----GKKEYSL  160 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS----------------EEEEECTTSEEEEEETTT----CSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC----------------EEEEEcCCCcEEEEEcCC----CceeEEe
Confidence            99999999999998888877777677777665442                224456677888887765    3446677


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ..|...|.+++|+|++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.|+.|+|||+++++
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCC
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcc
Confidence            8899999999999999 99999999999999999999998886 899999999999 99999999999999999999987


Q ss_pred             EE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       463 ~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .+ .+.+|...|++++|+|++++|++|+.||+|+|||+.+++++..+.        .+...|++++|+|
T Consensus       240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~h~~~v~~v~~s~  300 (321)
T 3ow8_A          240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--------DHQDQVWGVKYNG  300 (321)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECT
T ss_pred             eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--------CCCCcEEEEEECC
Confidence            76 578899999999999999999999999999999999998877653        2346789999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.6e-34  Score=289.56  Aligned_cols=266  Identities=18%  Similarity=0.299  Sum_probs=221.6

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ...+.+|...+.+++|+|++++|++|+.||.|+|||.....       ....+..|...|.+++|+|++++|++|+.|+.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence            34577788899999999999999999999999999987543       23457889999999999999999999999999


Q ss_pred             EEEEEcccCc----cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          308 VRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       308 I~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      |++|++.+..    ....+..+...+.++.+.+..                 ..+.++.++.+.+|+....    +.+..
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------------~l~s~s~d~~i~~wd~~~~----~~~~~  179 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------------QIVTSSGDTTCALWDIETG----QQTTT  179 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-----------------EEEEEETTSCEEEEETTTT----EEEEE
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCC-----------------cEEEEECCCcEEEEECCCC----cEEEE
Confidence            9999997653    223334444444444443321                 1356677889999987653    45678


Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      +.+|.+.|.+++|+|++ +|++|+.|++|++||++++.++..+. |...|++++|+| ++++|++|+.||+|+|||++++
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC
Confidence            89999999999999999 99999999999999999999998886 999999999999 9999999999999999999998


Q ss_pred             eEEEecCC---CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          462 QVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       462 ~~~~~~~~---~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +.+....+   ...|++++|+|+|++|++|+.||.|++||+.+++.+..+.        .|...|++++|+|
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~s~  322 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--------GHDNRVSCLGVTD  322 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECT
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee--------cCCCcEEEEEEcC
Confidence            87754333   3479999999999999999999999999999988766443        3457899999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.8e-34  Score=284.42  Aligned_cols=280  Identities=18%  Similarity=0.232  Sum_probs=234.2

Q ss_pred             cccccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       226 ~~~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      .....+.+|.+.|.+++|+|++ .+|++|+.|++|++|++......  .......+.+|...|++++|+|+|++|++|+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--EEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--ccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            3345678899999999999976 79999999999999998643322  12234568899999999999999999999999


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      |++|++||+.+++.+..+..+...+.++.+.+..                ...++++.++.+.+|+.+     ...+..+
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~l~s~s~D~~i~vwd~~-----~~~~~~~  144 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA----------------SMIISGSRDKTIKVWTIK-----GQCLATL  144 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS----------------CEEEEEETTSCEEEEETT-----SCEEEEE
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC----------------CEEEEEeCCCeEEEEECC-----CCeEEEE
Confidence            9999999999999888888777777776665433                123567788889999764     3567788


Q ss_pred             ecCCCCeeEEEEcCC------C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614          385 QGHSSEVLDLSWSKN------G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~------~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw  456 (531)
                      .+|...|.++.++|.      + .|++++.|++|++||+++.+....+. |...|++++|+| ++++|++|+.||.|+||
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iw  223 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW  223 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence            999999999999984      3 79999999999999999998888775 999999999999 99999999999999999


Q ss_pred             eCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       457 d~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |+.+++.+....+...|.+++|+|++.+|++++.+ .+++|++..+.++........+..+.+...+++++|+|
T Consensus       224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred             ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence            99999988766667889999999999999988755 59999999988887766555444445567889999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=287.50  Aligned_cols=247  Identities=14%  Similarity=0.189  Sum_probs=202.7

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +...+.+++|+|++ .+++|+.||.|+|||+.+......   ....+.+|.+.|++|+|+|+|++|++|+.||+|++||+
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            44567889999985 678999999999999986553211   12245689999999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe--ecCCCCe
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEV  391 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I  391 (531)
                      .+++.+..+..+...+.++.+.+.....               .++++.|+.+.+|+.+...    +...+  ..|...+
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~---------------l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~  217 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSV---------------FLSCSEDNRILLWDTRCPK----PASQIGCSAPGYLP  217 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTE---------------EEEEETTSCEEEEETTSSS----CEEECC----CCCE
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCc---------------eeeeccccccccccccccc----eeeeeecceeeccc
Confidence            9999998888888888887776654332               2456678889999876533    34443  3456679


Q ss_pred             eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCC-CEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       392 ~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~-~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      .+++|+|++  +|++|+.|++|++||+++++++..+. |...|++|+|+| ++ ++|++|+.|++|+|||+.+++++.+.
T Consensus       218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~~~~~~~  296 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLSELFRSQ  296 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCCEEEEEC
T ss_pred             eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCcEEEEc
Confidence            999999965  88999999999999999999998886 999999999999 65 68999999999999999999999999


Q ss_pred             CCCCceEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeE
Q 009614          468 DIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      +|...|++++|+|+++ +|++++.||+|++|++.+..+
T Consensus       297 ~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          297 AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            9999999999999986 567899999999999987544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=287.62  Aligned_cols=277  Identities=15%  Similarity=0.145  Sum_probs=211.7

Q ss_pred             ccccccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCc----ccccccccceEEcccCCCEEEEEEccCCCE
Q 009614          223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLDGQY  298 (531)
Q Consensus       223 ~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~  298 (531)
                      .|..+.....++...+.+++|+|||++|++++ |+++++|+.....    ..............|...|.+++|+|++ .
T Consensus        18 ~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~   95 (344)
T 4gqb_B           18 EWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G   95 (344)
T ss_dssp             -----CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred             ccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence            34433344455666788899999999999887 6777777632110    0000111112334577889999999985 7


Q ss_pred             EEEEeCCCcEEEEEcccCcccccee----cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614          299 LASGGEDGTVRVWKVIEHERLDGFD----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       299 Lasgs~Dg~I~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                      |++|+.||+|+|||+.+++......    .+...+.++.|.++.                ..+++++.++.+.+|+... 
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg----------------~~l~sgs~d~~i~iwd~~~-  158 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG----------------TQAVSGSKDICIKVWDLAQ-  158 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTT-
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC----------------CEEEEEeCCCeEEEEECCC-
Confidence            8899999999999999887654432    345555566555433                2335677888999998765 


Q ss_pred             cccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeC
Q 009614          375 RLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                         .+.+..+.+|.+.|.+++|+|++  +|++++.|++|++||+++++++..+.   +...+++++|+|.++++|++|+.
T Consensus       159 ---~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          159 ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             ---TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             ---CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence               45678899999999999999987  78999999999999999999888774   56679999999977789999999


Q ss_pred             CCeEEEEeCCCCeEE-EecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEE
Q 009614          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ  527 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~  527 (531)
                      ||.|+|||+++++++ .+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++.     +    +.|...|++++
T Consensus       236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-----~----~~H~~~V~~v~  306 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-----S----QAHRDFVRDAT  306 (344)
T ss_dssp             TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-----E----CCCSSCEEEEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-----E----cCCCCCEEEEE
Confidence            999999999998766 588899999999999998 579999999999999999988653     1    23557899999


Q ss_pred             Eee
Q 009614          528 VVK  530 (531)
Q Consensus       528 f~p  530 (531)
                      |+|
T Consensus       307 ~sp  309 (344)
T 4gqb_B          307 WSP  309 (344)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            987

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.9e-33  Score=279.72  Aligned_cols=269  Identities=19%  Similarity=0.267  Sum_probs=220.2

Q ss_pred             cccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC
Q 009614          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       226 ~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      +....+.+|...|.+++|+|++.+|++|+.||.|+|||......       ...+..|...|.+++|+|+|.+|++|+.|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-------~~~~~~~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------EHAVTMPCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------EEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-------ceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            34456788999999999999999999999999999999875432       34567799999999999999999999999


Q ss_pred             CcEEEEEcccCc------cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          306 GTVRVWKVIEHE------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       306 g~I~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      +.|++|++....      ....+..+...+.++.|.+..                ...++++.++.+.+|+...    .+
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~l~t~s~D~~v~lwd~~~----~~  187 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD----------------MQILTASGDGTCALWDVES----GQ  187 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS----------------SEEEEEETTSEEEEEETTT----CC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC----------------CEEEEEeCCCcEEEEeCCC----Ce
Confidence            999999986542      122233333334444443322                1345678889999998865    34


Q ss_pred             ceeEeecCCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          380 PLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      .+..+.+|...|.+++|+|+  + +|++|+.|++|++||+++++++..+. |...|++++|+| ++++|++|+.|++|++
T Consensus       188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~l  266 (354)
T 2pbi_B          188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRL  266 (354)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEE
Confidence            57889999999999999884  5 99999999999999999999998886 999999999999 9999999999999999


Q ss_pred             EeCCCCeEEEecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          456 WEVRRCQVVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       456 wd~~~~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ||+++.+.+....   +...+++++|+|+|++|++|+.||.|++||+.+++.+..+.        .|...|++++|+|
T Consensus       267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--------~h~~~v~~l~~sp  336 (354)
T 2pbi_B          267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--------GHENRVSTLRVSP  336 (354)
T ss_dssp             EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--------CCSSCEEEEEECT
T ss_pred             EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--------CCCCcEEEEEECC
Confidence            9999987664332   33478999999999999999999999999999888765432        3457899999987

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-33  Score=283.33  Aligned_cols=265  Identities=15%  Similarity=0.193  Sum_probs=200.3

Q ss_pred             cccccccccceeeeccccceeeeCCCCeEEeeec------CCeEEEEeCCCCcccccc----------------------
Q 009614          222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR------MRRVRVHPVKKQSRELSS----------------------  273 (531)
Q Consensus       222 ~~w~~~~~~~~~~~~~~~s~~fspdg~~lasgs~------dg~I~vwd~~~~~~~~~~----------------------  273 (531)
                      ..|..+....++|...+.+++|+|||++||+|+.      |+.|++|+..........                      
T Consensus        29 ~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~  108 (357)
T 4g56_B           29 SAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI  108 (357)
T ss_dssp             -----------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE
T ss_pred             cccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE
Confidence            4455444555677777888888888888888776      667777765433211000                      


Q ss_pred             --------------------cccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEE
Q 009614          274 --------------------LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (531)
Q Consensus       274 --------------------~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (531)
                                          ........+|.+.|++|+|+|+|++|++|+.||+|++||+.+++.+..+..+...+.++.
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~  188 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA  188 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence                                000112347899999999999999999999999999999999988888887777777777


Q ss_pred             EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcE
Q 009614          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTV  411 (531)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V  411 (531)
                      +.+.....+               +.++.++.+.+|+.......  ....+..|...+.+++|+|++  +|++|+.|+.|
T Consensus       189 ~s~~~~~~~---------------~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i  251 (357)
T 4g56_B          189 ACPGKDTIF---------------LSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV  251 (357)
T ss_dssp             ECTTCSSCE---------------EEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred             EccCCCcee---------------eeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccce
Confidence            765543322               34566788999987654321  122334577889999999985  88999999999


Q ss_pred             EEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEcc-CCCEEEEEe
Q 009614          412 RLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGT  489 (531)
Q Consensus       412 ~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs  489 (531)
                      ++||+++++++..+. |...|++++|+|...++|++|+.|++|+|||+.+++++...+|...|++|+|+| |+.+|++++
T Consensus       252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEc
Confidence            999999999988886 899999999999445789999999999999999999999889999999999999 899999999


Q ss_pred             CCCcEEEEeCCCCe
Q 009614          490 MTGNCRFYDIKDNQ  503 (531)
Q Consensus       490 ~dg~I~iwd~~~~~  503 (531)
                      .||+|++|++.+..
T Consensus       332 ~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          332 WDHKVLHHHLPSEG  345 (357)
T ss_dssp             TTSCEEEEECC---
T ss_pred             CCCeEEEEECCCCC
Confidence            99999999997543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-33  Score=286.52  Aligned_cols=271  Identities=22%  Similarity=0.347  Sum_probs=215.7

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      ..+.+|.+.|.+++|+|++++|++|+.||+|+|||.....       ....+.+|...|.+++|+|+|++|++|+.|+.|
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            4567788999999999999999999999999999987543       334688999999999999999999999999999


Q ss_pred             EEEEcccCcc-------ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          309 RVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       309 ~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      ++|++.+...       ...+..+...+..+.+.+..               ....++++.++.+.+|+.....    .+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~---------------~~~l~s~s~D~~i~~wd~~~~~----~~  193 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ---------------ETRLITGSGDQTCVLWDVTTGQ----RI  193 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS---------------SSCEEEECTTSCEEEECTTTCC----EE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCC---------------CCEEEEECCCCcEEEEEcCCCc----EE
Confidence            9999875421       12233333333333332221               1234677889999999987533    23


Q ss_pred             eEe-----ecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECC-CCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          382 HEF-----QGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       382 ~~~-----~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~-~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      ..+     .+|...|.+++|++ ++ +|++|+.|++|++||++ .++++..+. |...|++++|+| ++++|++|+.||+
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~  272 (380)
T 3iz6_a          194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGT  272 (380)
T ss_dssp             EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSC
T ss_pred             EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCe
Confidence            333     67999999999987 55 99999999999999998 456677765 999999999999 9999999999999


Q ss_pred             EEEEeCCCCeEEEe-cCC-------CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceee
Q 009614          453 VRIWEVRRCQVVDY-TDI-------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT  524 (531)
Q Consensus       453 I~Iwd~~~~~~~~~-~~~-------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It  524 (531)
                      |+|||+++++.+.. ..+       ...|++++|+|+|++|++|+.||.|++||+..++.+......    ...|...|+
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~h~~~v~  348 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL----QNSHEGRIS  348 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS----CSSCCCCCC
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc----cCCCCCceE
Confidence            99999999987743 222       234899999999999999999999999999998877654322    244668899


Q ss_pred             eEEEee
Q 009614          525 GFQVVK  530 (531)
Q Consensus       525 ~l~f~p  530 (531)
                      .++|+|
T Consensus       349 ~l~~s~  354 (380)
T 3iz6_a          349 CLGLSS  354 (380)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999987

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-33  Score=288.52  Aligned_cols=243  Identities=18%  Similarity=0.315  Sum_probs=209.2

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|.+.+.+++|+|++.+|++|+.|+.|+|||+....       ....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            455677888899999999999999999999999987433       3345789999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +||+.++.++..+..+...+.++.+.++.                ...++++.++.+.+|+....    .....+.+|..
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g----------------~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~  277 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDG----------------TLIASCSNDQTVRVWVVATK----ECKAELREHRH  277 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTTC----CEEEEECCCSS
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCC----------------CEEEEEcCCCeEEEEECCCC----ceeeEecCCCc
Confidence            99999998888877766655555544322                22356677888999987653    45677889999


Q ss_pred             CeeEEEEcCC--------------------C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEE
Q 009614          390 EVLDLSWSKN--------------------G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       390 ~I~~l~~sp~--------------------~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sg  447 (531)
                      .|.+++|+|+                    + +|++|+.|++|++||++++.++..+. |...|++++|+| ++.+|++|
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~  356 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSC  356 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEE
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEE
Confidence            9999999995                    4 79999999999999999999998886 999999999999 99999999


Q ss_pred             eCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       448 s~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +.|+.|+|||+.+++++ .+.+|...|++++|+|++.+|++|+.||+|+||+++
T Consensus       357 s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999988765 577899999999999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=275.38  Aligned_cols=242  Identities=21%  Similarity=0.276  Sum_probs=211.0

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|...+.+++|+|++.++++|+.|+.|++||+....       ....+.+|...+.+++|+|++++|++|+.||.|++
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI  148 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence            45677788899999999999999999999999998543       23457789999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |++.+++....+..+...+.++.+.++..                ..+.++.++.+.+|+...    .+.+..+.+|...
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~----------------~lasg~~dg~i~iwd~~~----~~~~~~~~~h~~~  208 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGK----------------YLASGAIDGIINIFDIAT----GKLLHTLEGHAMP  208 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT----TEEEEEECCCSSC
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCC----------------EEEEEcCCCeEEEEECCC----CcEEEEEcccCCc
Confidence            99999887777766666566666554432                234566788899998765    3457788999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Eec
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT  467 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~  467 (531)
                      |.+++|+|++ +|++++.|++|++||+++++++..+. |...|++++|+| ++.+|++++.|++|+|||+.+++++ .+.
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            9999999999 99999999999999999999888886 999999999999 9999999999999999999999887 477


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +|...|++++|+|+|++|++++.||.|+|||+.
T Consensus       288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            899999999999999999999999999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-31  Score=265.46  Aligned_cols=266  Identities=19%  Similarity=0.310  Sum_probs=222.3

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      ..+.+|...+.+++|+|++++|++|+.||.|++|+.....       ..+.+.+|...|.+++|+|++++|++|+.||.|
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            3567788889999999999999999999999999987543       234678999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+.+++.+..+..+...+.++.+.+...                ..+.++.++.+.+|+...    .+.+..+..|.
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~  149 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN----------------LIVSGSFDESVRIWDVKT----GKCLKTLPAHS  149 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS----------------EEEEEETTSCEEEEETTT----CCEEEEECCCS
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCC----------------EEEEEeCCCcEEEEECCC----CEEEEEecCCC
Confidence            9999999988888877777666666655332                235567788899998765    34567888999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      ..|.+++|+|++ +|++++.|+.|++||+++++++..+.  +...+.+++|+| ++++|++++.|+.|++||+.+++.+.
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~  228 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLK  228 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            999999999999 99999999999999999999888774  667899999999 99999999999999999999998774


Q ss_pred             -ecCCCCce---EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          466 -YTDIREIV---SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       466 -~~~~~~~v---~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                       +.+|...+   ......+++.+|++|+.||.|++||+.+++++..++        .+...|++++|+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~p  289 (312)
T 4ery_A          229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--------GHTDVVISTACHP  289 (312)
T ss_dssp             EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECS
T ss_pred             EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--------ccCCcEEEEeecC
Confidence             55665433   223334688999999999999999999998876543        2346788888887

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-31  Score=267.24  Aligned_cols=278  Identities=18%  Similarity=0.267  Sum_probs=222.9

Q ss_pred             cceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      ++.+|.+.|.+++|+|+ +++||+|+.|++|+||++......  .....+.+.+|...|.+++|+|+|++|++|+.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            57789999999999998 579999999999999999865433  223445789999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++|+.....................+.+..                ...+.++.++.+.+|+.....   .......+|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~s~s~d~~~~~~d~~~~~---~~~~~~~~~~  171 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDN----------------RQIVSGSRDKTIKLWNTLGVC---KYTVQDESHS  171 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTS----------------SCEEEEETTSCEEEECTTSCE---EEEECSSSCS
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecC----------------ccceeecCCCeEEEEEeCCCc---eEEEEecccc
Confidence            999998877665555444443333332222                123456677888888765432   2244567799


Q ss_pred             CCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          389 SEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       389 ~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ..+..++|++++   ++++++.|++|++||+++++++..+. |...|++|+|+| ++++|++|+.||.|++||+++.+.+
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCcee
Confidence            999999999875   78899999999999999999988885 999999999999 9999999999999999999999998


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecc-cccCCCceeeeEEEee
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG-KKKLPGKRITGFQVVK  530 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~-~kk~~~~~It~l~f~p  530 (531)
                      ....+...|.+++|+|++. +++++.|+.|++||++++.++...+..... ....+...|++++|+|
T Consensus       251 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          251 YTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             EEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             eeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence            7777778999999999886 456667999999999999988776543322 2345678999999987

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=276.07  Aligned_cols=280  Identities=19%  Similarity=0.220  Sum_probs=213.4

Q ss_pred             ccceeeec-cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          229 GAMARIID-RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       229 ~~~~~~~~-~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ..+..|.+ .+.+++|+|+|++||+|+.|+.|+||++.......    ......+|...|++++|+|+|++||+|+.|++
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC----KSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE----EEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee----eeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            34555665 67789999999999999999999999987543211    11123689999999999999999999999999


Q ss_pred             EEEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      |+||++.++.  .+..+..+...+.++.|.++..                ..++++.++.+.+|+...... ...+..+.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~----------------~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~  147 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN----------------LLATCSRDKSVWVWEVDEEDE-YECVSVLN  147 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEEECTTSC-EEEEEEEC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC----------------EEEEEECCCeEEEEECCCCCC-eEEEEEec
Confidence            9999987764  4455666666666666655432                235567788888887654221 12356778


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE--EEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC--LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~--l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      +|...|.+++|+|++ +|++++.|++|++||++++..  ...+ .|...|++++|+| ++++|++|+.|++|+||+....
T Consensus       148 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECT
T ss_pred             CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccC
Confidence            999999999999999 999999999999999988764  3444 4999999999999 9999999999999999996321


Q ss_pred             ---------------eEE-EecC-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc-ccCCCcee
Q 009614          462 ---------------QVV-DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRI  523 (531)
Q Consensus       462 ---------------~~~-~~~~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~-kk~~~~~I  523 (531)
                                     +++ .+.+ |...|++++|+|++..|++++.|+.|++|+...+.........+..+ ...|...|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V  306 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV  306 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE
T ss_pred             CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE
Confidence                           122 2333 78899999999999999999999999999987654221111111111 23466889


Q ss_pred             eeEEEee
Q 009614          524 TGFQVVK  530 (531)
Q Consensus       524 t~l~f~p  530 (531)
                      ++++|+|
T Consensus       307 ~~v~~~p  313 (345)
T 3fm0_A          307 NCVAWNP  313 (345)
T ss_dssp             EEEEECS
T ss_pred             eEeEEeC
Confidence            9999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.2e-32  Score=293.92  Aligned_cols=267  Identities=18%  Similarity=0.251  Sum_probs=219.5

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC----
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----  305 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----  305 (531)
                      .+.+|.+.+.+++|+|+|++||+|+.|++|+|||+......     ....+.+|.++|.+++|+|+|++|++++.+    
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~  128 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  128 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence            35567788999999999999999999999999998643321     223578899999999999999999999875    


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.|++||  ++.....+..+...+.++.|.+....               ..++++.++.+.+|+....    +....+.
T Consensus       129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~---------------~l~s~s~D~~v~lwd~~~~----~~~~~l~  187 (611)
T 1nr0_A          129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKSTFG  187 (611)
T ss_dssp             EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEEEC
T ss_pred             eEEEEee--CCCCcceecCCCCCceEEEECCCCCe---------------EEEEEeCCCeEEEEECCCC----eEeeeec
Confidence            4677777  45566667777777777777665422               2356778888999986543    3467789


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw  456 (531)
                      +|...|.+++|+|++ +|++++.|++|++||+.+++++..+        .|...|++++|+| ++++|++++.|++|+||
T Consensus       188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence            999999999999999 9999999999999999999998887        5899999999999 99999999999999999


Q ss_pred             eCCCCeEEE--------------------------------------------ecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          457 EVRRCQVVD--------------------------------------------YTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       457 d~~~~~~~~--------------------------------------------~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      |+.+++.+.                                            +.+|...|++++|+|||++|++++.||
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            999876432                                            246888999999999999999999999


Q ss_pred             cEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       493 ~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +|++||+.+++.....       ...+...|++++|+|
T Consensus       347 ~v~~Wd~~~~~~~~~~-------~~~h~~~v~~~~~s~  377 (611)
T 1nr0_A          347 HINSWDISTGISNRVF-------PDVHATMITGIKTTS  377 (611)
T ss_dssp             CEEEEETTTCCEEECS-------SCSCSSCEEEEEECT
T ss_pred             cEEEEECCCCceeeec-------ccCCcceEEEEEECC
Confidence            9999999998765432       123456778877753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.6e-32  Score=267.70  Aligned_cols=249  Identities=17%  Similarity=0.239  Sum_probs=198.3

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I  308 (531)
                      +.+|.+.|.+++|+|+|++||+|+.|+.|+||++.....     .....+.+|.++|++++|++  ++++||+|+.||+|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            456778889999999999999999999999999874321     23357899999999999986  48999999999999


Q ss_pred             EEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      +|||+.+++  .+..+..+...+.++.|.+.....              ..+.++.++.+.+|+......  .....+.+
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~--------------~l~s~s~d~~v~~wd~~~~~~--~~~~~~~~  143 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--------------MLLVASSDGKVSVVEFKENGT--TSPIIIDA  143 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS--------------EEEEEETTSEEEEEEBCSSSC--BCCEEEEC
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc--------------EEEEEECCCcEEEEEecCCCc--eeeeeeec
Confidence            999998774  333444455566666665543211              234567788888887654321  12356789


Q ss_pred             CCCCeeEEEEcCC-------------C-eEEEEeCCCcEEEEECCCCe----EEEEee-cCCceEEEEEeeCC---CCEE
Q 009614          387 HSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---DNYF  444 (531)
Q Consensus       387 h~~~I~~l~~sp~-------------~-~l~s~s~Dg~V~lwdl~~~~----~l~~~~-h~~~V~sv~fsp~d---~~~l  444 (531)
                      |...|.+++|+|+             + +|++|+.|++|++||++++.    .+..+. |...|++++|+| +   +.+|
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~l  222 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYM  222 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEE
Confidence            9999999999996             3 89999999999999998765    455554 999999999999 6   4899


Q ss_pred             EEEeCCCeEEEEeCCCCe----EEEe--cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          445 ISGSIDGKVRIWEVRRCQ----VVDY--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~~----~~~~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      ++++.|++|+|||+.+..    ...+  ..|...|.+++|+|+|++|++++.||.|+||+...
T Consensus       223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999999999998742    1222  46788999999999999999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.2e-32  Score=271.61  Aligned_cols=242  Identities=18%  Similarity=0.273  Sum_probs=207.6

Q ss_pred             eeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      ..|...+.+++|+|++.++++|+.|+.|++|++......   ......+.+|.+.|.++.|++++. |++++.|++|++|
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~w  169 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN---VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW  169 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS---CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc---ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEE
Confidence            334556778999999999999999999999999764422   223456889999999999998875 8999999999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      |+.+++....+..+...+.++.+.++..                ..++++.++.+.+|+...    ...+..+.+|...|
T Consensus       170 d~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~sg~~d~~v~~wd~~~----~~~~~~~~~h~~~v  229 (340)
T 1got_B          170 DIETGQQTTTFTGHTGDVMSLSLAPDTR----------------LFVSGACDASAKLWDVRE----GMCRQTFTGHESDI  229 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTT----CSEEEEECCCSSCE
T ss_pred             ECCCCcEEEEEcCCCCceEEEEECCCCC----------------EEEEEeCCCcEEEEECCC----CeeEEEEcCCcCCE
Confidence            9999988888877777776666655431                235667788999998765    34577889999999


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC---CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Ee
Q 009614          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY  466 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~---~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~  466 (531)
                      .+++|+|++ +|++|+.|++|++||+++++.+..+.|.   ..|++++|+| ++++|++|+.|+.|++||+.+++.+ .+
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence            999999999 9999999999999999999998888754   4799999999 9999999999999999999988776 57


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .+|...|++++|+|+|.+|++|+.||.|+|||
T Consensus       309 ~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            89999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-31  Score=289.79  Aligned_cols=248  Identities=16%  Similarity=0.217  Sum_probs=203.2

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      ...+.+++|+|+|++||+++ ++.|++|++....       ....+.+|...|++++|+|+|++||+|+.||+|+|||+.
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~-------~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~   89 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT   89 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcc-------cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECC
Confidence            34556789999999999987 5799999987432       334688999999999999999999999999999999997


Q ss_pred             cCcc--ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          315 EHER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       315 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      +++.  ...+..+...+.++.|.++....+ .....           ....+.+.+|+..      .....+.+|...|.
T Consensus        90 ~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~-~~~~~-----------~~~~~~v~~wd~~------~~~~~l~gh~~~v~  151 (611)
T 1nr0_A           90 QTTHILKTTIPVFSGPVKDISWDSESKRIA-AVGEG-----------RERFGHVFLFDTG------TSNGNLTGQARAMN  151 (611)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECTTSCEEE-EEECC-----------SSCSEEEEETTTC------CBCBCCCCCSSCEE
T ss_pred             CCcceeeEeecccCCceEEEEECCCCCEEE-EEECC-----------CCceeEEEEeeCC------CCcceecCCCCCce
Confidence            6543  334556666677777766543211 11100           0112467777742      34567889999999


Q ss_pred             EEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec--
Q 009614          393 DLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--  467 (531)
Q Consensus       393 ~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~--  467 (531)
                      +++|+|++  .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++|+.|++|+|||+.+++.+...  
T Consensus       152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~  230 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFED  230 (611)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeecc
Confidence            99999997  69999999999999999999888886 999999999999 9999999999999999999998877533  


Q ss_pred             ------CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          468 ------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       468 ------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                            +|...|++++|+|+|++|++++.|++|+|||+.+++++..+.
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  278 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence                  699999999999999999999999999999999998877654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-31  Score=271.31  Aligned_cols=245  Identities=20%  Similarity=0.285  Sum_probs=209.3

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +...+.+++|+|+|.++++|+.|+.+++|++....... .......+.+|.+.|.+++|+|++.+|++|+.|++|++||+
T Consensus       105 ~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~  183 (354)
T 2pbi_B          105 PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN-MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV  183 (354)
T ss_dssp             SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC-SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc-ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC
Confidence            34557789999999999999999999999987543221 12334567899999999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++.+..+..+...+.++.+.+.....              ..++++.++.+.+|+.+.    .+.+..+.+|...|.+
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~~~~~~g~--------------~l~sgs~Dg~v~~wd~~~----~~~~~~~~~h~~~v~~  245 (354)
T 2pbi_B          184 ESGQLLQSFHGHGADVLCLDLAPSETGN--------------TFVSGGCDKKAMVWDMRS----GQCVQAFETHESDVNS  245 (354)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECCCSSCC--------------EEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEE
T ss_pred             CCCeEEEEEcCCCCCeEEEEEEeCCCCC--------------EEEEEeCCCeEEEEECCC----CcEEEEecCCCCCeEE
Confidence            9999888888777777777766543322              235667788999998875    3457788999999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec---CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecC
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD  468 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h---~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~  468 (531)
                      ++|+|++ +|++++.|++|++||+++++.+..+.+   ...+++++|+| ++.+|++|+.|+.|+|||+.+++.+ .+.+
T Consensus       246 v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~  324 (354)
T 2pbi_B          246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFG  324 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEEC
Confidence            9999999 999999999999999999988887753   35789999999 9999999999999999999988766 5788


Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      |...|++++|+|||++|++|+.||+|+||+
T Consensus       325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-31  Score=270.80  Aligned_cols=283  Identities=15%  Similarity=0.175  Sum_probs=216.4

Q ss_pred             ccccceeeeccccceee-----eC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE
Q 009614          227 KLGAMARIIDRHGSATL-----KP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA  300 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~f-----sp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La  300 (531)
                      ....+.+|.+.|.+++|     ++ ++.+|++|+.|++|+||++...............+.+|...|++++|+|++.+|+
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            34567788899999998     66 9999999999999999998754432112233456889999999999999999999


Q ss_pred             EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      +|+.|++|++||+.+++.+..+..+...+.++.|.++..                ..+.++.++.+.+|+......  ..
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~----------------~l~s~~~d~~i~~wd~~~~~~--~~  154 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR----------------QILSAGAEREIKLWNILGECK--FS  154 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT----------------EEEEEETTSCEEEEESSSCEE--EE
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC----------------EEEEEcCCCEEEEEeccCCce--ee
Confidence            999999999999999998888888877777777766542                224566788888888652110  01


Q ss_pred             eeEeecCCCCeeEEEEcCCC-----------eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe
Q 009614          381 LHEFQGHSSEVLDLSWSKNG-----------FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp~~-----------~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      .....+|...|.+++|+|++           +|++++.|++|++||. ..+....+ .|...|++++|+| ++++|++|+
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs  232 (343)
T 2xzm_R          155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISP-NGKYIATGG  232 (343)
T ss_dssp             CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECC-CCCEEEEEc
Confidence            11123789999999999974           7999999999999995 45555555 4999999999999 999999999


Q ss_pred             CCCeEEEEeCCC-CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee--ecc---cccCCCce
Q 009614          449 IDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC--LQG---KKKLPGKR  522 (531)
Q Consensus       449 ~Dg~I~Iwd~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~--~~~---~kk~~~~~  522 (531)
                      .||.|+|||+.. ........+...|.+++|+|++.+|+++ .|+.|++|++.+++......+.  ...   ..+.+...
T Consensus       233 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (343)
T 2xzm_R          233 KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ  311 (343)
T ss_dssp             TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred             CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence            999999999954 3333334456679999999999887655 5888999999887654422211  110   11245567


Q ss_pred             eeeEEEee
Q 009614          523 ITGFQVVK  530 (531)
Q Consensus       523 It~l~f~p  530 (531)
                      |++++|+|
T Consensus       312 v~~~~~sp  319 (343)
T 2xzm_R          312 CTSLAWNA  319 (343)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECC
Confidence            99999987

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-31  Score=267.45  Aligned_cols=250  Identities=17%  Similarity=0.287  Sum_probs=205.2

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      ..+.+|...+.+++|+|++.++++|+.|++|+|||+.++.       ..+.+.+|...|.+++|+|++.+|++|+.|++|
T Consensus        59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i  131 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI  131 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            4566788888899999999999999999999999998543       335688999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+. +..+..+..+...+.++.+.+....          .......+.++.++.+.+|+.....    ....+.+|.
T Consensus       132 ~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~----------~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~  196 (319)
T 3frx_A          132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA----------DDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHN  196 (319)
T ss_dssp             EEEETT-SCEEEEECCCSSCEEEEEECCC----------------CCEEEEEETTSCEEEEETTTTE----EEEEECCCC
T ss_pred             EEEECC-CCeEEEEeccCCcEEEEEEccCCCC----------CCCccEEEEEeCCCEEEEEECCcch----hheeecCCC
Confidence            999985 4445555555555555555443211          0112234677888999999887643    456788999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-e
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y  466 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~  466 (531)
                      ..|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++|+| ++.+|++++. +.+++|++.....+. +
T Consensus       197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~-~~i~v~~~~~~~~~~~~  274 (319)
T 3frx_A          197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATA-TGIKVFSLDPQYLVDDL  274 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECS-SSSEEEEEET-TEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcC-CCCEEEEEcC-CCcEEEEeCcCeeeecc
Confidence            999999999999 99999999999999999999999999888999999999 8999988875 469999999877653 2


Q ss_pred             --------cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          467 --------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       467 --------~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                              ..+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       275 ~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                    224567999999999999999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-31  Score=266.15  Aligned_cols=273  Identities=21%  Similarity=0.235  Sum_probs=204.0

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEE-cc-cCCCEEEEEEccCCCEEEEEeCC
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LA-HEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l-~~-H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      +..+.+|.+.+.+++|+|+  +||+|+.|+.|++|++......     ....+ .+ |.+.|++++|+|++++|++|+.|
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----EEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----EEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            3456678888999999988  9999999999999999753211     12234 34 99999999999999999999999


Q ss_pred             CcEEEEEcccC-------ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          306 GTVRVWKVIEH-------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       306 g~I~iWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      ++|+||++...       +....+..+...+.++.|.++.                ..+++++.++.+.+|+........
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------------~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------------YYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------------CEEEEEETTSCEEEEECCTTCCCC
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------------CEEEEEeCCCEEEEEeccCCCCCe
Confidence            99999998542       2233344444445555554432                234567788899999874322223


Q ss_pred             cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC--eEEEEee-cCCceEEEEEeeCC--CCEEEEEeCCCe
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVD--DNYFISGSIDGK  452 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~--~~l~~~~-h~~~V~sv~fsp~d--~~~l~sgs~Dg~  452 (531)
                      +.+..+.+|...|.+++|+|++ +|++++.|++|++||+.++  +++..+. |...|++++|+| +  +.+|++|+.|++
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSC
T ss_pred             EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCe
Confidence            4567788999999999999999 9999999999999999876  5666765 999999999999 6  678999999999


Q ss_pred             EEEEeCCCC--------eEEE-ecC-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCc-
Q 009614          453 VRIWEVRRC--------QVVD-YTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK-  521 (531)
Q Consensus       453 I~Iwd~~~~--------~~~~-~~~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~-  521 (531)
                      |+|||+..+        .... +.. |...|++++|++++ +|++++.||.|+||++.+++.......     ...+.. 
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-----~~~h~~~  296 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-----ALCHGVY  296 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-----SCTTTTS
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-----ccccccc
Confidence            999998754        2232 333 88899999999765 799999999999999987753211111     112333 


Q ss_pred             eeeeEEEee
Q 009614          522 RITGFQVVK  530 (531)
Q Consensus       522 ~It~l~f~p  530 (531)
                      .|+.++|+|
T Consensus       297 ~v~~v~~~~  305 (330)
T 2hes_X          297 EINVVKWLE  305 (330)
T ss_dssp             CEEEEEEC-
T ss_pred             eEEEEEEec
Confidence            788999887

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.3e-32  Score=276.40  Aligned_cols=254  Identities=17%  Similarity=0.290  Sum_probs=206.3

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~  309 (531)
                      +..|...+.+++|+|+|+++++|+.|+.|++|++...............+.+|.+.|.++.|+|+ +..|++|+.|++|+
T Consensus       104 ~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~  183 (380)
T 3iz6_a          104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCV  183 (380)
T ss_dssp             EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEE
T ss_pred             EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEE
Confidence            34566678889999999999999999999999997644333333344568899999999999996 45799999999999


Q ss_pred             EEEcccCcccccee-----cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          310 VWKVIEHERLDGFD-----VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       310 iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      +||+.+++.+..+.     .+...+.++.+.+..               ....++++.++.+.+|+.+..   ..++..+
T Consensus       184 ~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~~~l~sgs~D~~v~~wd~~~~---~~~~~~~  245 (380)
T 3iz6_a          184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN---------------ANMFISGSCDTTVRLWDLRIT---SRAVRTY  245 (380)
T ss_dssp             EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS---------------CCEEEEEETTSCEEEEETTTT---CCCCEEE
T ss_pred             EEEcCCCcEEEEeecccCCCCccCeEEEEeecCC---------------CCEEEEEECCCeEEEEECCCC---CcceEEE
Confidence            99999988765552     222223333332211               223466788899999987632   3457788


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec--------CCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------NNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h--------~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      .+|.+.|.+++|+|++ +|++|+.|++|++||+++++++..+..        ...|++++|+| ++.+|++|+.||.|+|
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~v  324 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYV  324 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEE
Confidence            9999999999999999 999999999999999999999988752        23489999999 9999999999999999


Q ss_pred             EeCCCCeEEE-e----cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          456 WEVRRCQVVD-Y----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       456 wd~~~~~~~~-~----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      ||+.+++.+. +    .+|...|++++|+|+|++|++|+.||+|+||++...+
T Consensus       325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999887763 3    5788999999999999999999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.4e-30  Score=257.74  Aligned_cols=263  Identities=16%  Similarity=0.173  Sum_probs=218.6

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc--ccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      .|...+.+++|+|+++++++++ ||.|++|++.......    ....+.  +|...|.+++|+|++++|++++.||.|++
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            4667888999999999999998 9999999998654321    112233  79999999999999999999999999999


Q ss_pred             EEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          311 WKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       311 Wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ||+.+++  ....+..+...+.++.+.++..                ..+.++.++.+.+|+....    +.+..+.+|.
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~  183 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSK----------------VCFSCCSDGNIAVWDLHNQ----TLVRQFQGHT  183 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTT----EEEEEECCCS
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCC----------------EEEEEeCCCcEEEEeCCCC----ceeeeeeccc
Confidence            9998876  3344444444455555544321                2234556778888887653    4567788899


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      ..|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| ++++|++++.|+.|++||+.+++.....
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence            999999999999 99999999999999999999999999999999999999 9999999999999999999999988899


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .|...|++++|+|++++|++++.||.|++||+.+++.+....         +...|++++|+|
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~---------~~~~v~~~~~s~  316 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISV  316 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSSCEEEEEECT
T ss_pred             CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec---------CCCcEEEEEECC
Confidence            999999999999999999999999999999999988774321         346788888876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-31  Score=266.33  Aligned_cols=249  Identities=18%  Similarity=0.197  Sum_probs=194.9

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I  308 (531)
                      +.+|.+.|.+++|+|+|++||+|+.|+.|+|||+......     ....+.+|.+.|++++|++  ++++|++|+.|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            4568889999999999999999999999999998754321     2346889999999999986  48999999999999


Q ss_pred             EEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          309 RVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       309 ~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      ++||+.++.  ....+..+...+.++.|.+.....              ..+.++.++.+.+|+...... ......+.+
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~--------------~lasgs~D~~i~lwd~~~~~~-~~~~~~~~~  148 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL--------------ILACGSSDGAISLLTYTGEGQ-WEVKKINNA  148 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS--------------CEEEECSSSCEEEEEECSSSC-EEECCBTTS
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCc--------------EEEEEcCCCCEEEEecCCCCC-cceeeeecc
Confidence            999998764  344555666677777777653222              234566778888887653210 011345678


Q ss_pred             CCCCeeEEEEcCC-----------------C-eEEEEeCCCcEEEEECCCC---eEEEEee-cCCceEEEEEeeCCC---
Q 009614          387 HSSEVLDLSWSKN-----------------G-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDD---  441 (531)
Q Consensus       387 h~~~I~~l~~sp~-----------------~-~l~s~s~Dg~V~lwdl~~~---~~l~~~~-h~~~V~sv~fsp~d~---  441 (531)
                      |...|.+++|+|+                 + +|++|+.|++|++||++..   +++..+. |...|++++|+| ++   
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~  227 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLP  227 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCS
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCC
Confidence            9999999999997                 3 8999999999999999765   3555554 999999999999 65   


Q ss_pred             -CEEEEEeCCCeEEEEeCCCC---e--EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          442 -NYFISGSIDGKVRIWEVRRC---Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       442 -~~l~sgs~Dg~I~Iwd~~~~---~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                       .+|++|+.|++|+||++.+.   +  ...+..|...|++++|+|+|++|++++.||.|+||+..
T Consensus       228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence             89999999999999999762   1  12345678899999999999999999999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.98  E-value=6e-31  Score=265.51  Aligned_cols=252  Identities=17%  Similarity=0.219  Sum_probs=195.3

Q ss_pred             eeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      .+|...+.+++|+|++++|++|+.|+.|+||+......     .....+.+|...|++++|+|++++|++|+.|++|++|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-----ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW  132 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEE
Confidence            35667788999999999999999999999999874332     2335688999999999999999999999999999999


Q ss_pred             EcccCcc---ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          312 KVIEHER---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       312 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      |+.++..   +..+..+...+.++.|.++..                ..+.++.++.+.+|+......  .....+.+|.
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~----------------~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~  194 (345)
T 3fm0_A          133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQE----------------LLASASYDDTVKLYREEEDDW--VCCATLEGHE  194 (345)
T ss_dssp             EECTTSCEEEEEEECCCCSCEEEEEECSSSS----------------CEEEEETTSCEEEEEEETTEE--EEEEEECCCS
T ss_pred             ECCCCCCeEEEEEecCcCCCeEEEEECCCCC----------------EEEEEeCCCcEEEEEecCCCE--EEEEEecCCC
Confidence            9987643   333444555555555554332                234566777888887543211  2356788999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC---------------eEEEEee--cCCceEEEEEeeCCCCEEEEEeCC
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---------------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~---------------~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D  450 (531)
                      ..|.+++|+|++ +|++++.|++|++||....               +++..+.  |...|++++|+| ++.+|++++.|
T Consensus       195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d  273 (345)
T 3fm0_A          195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGD  273 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCC
Confidence            999999999999 9999999999999996321               2344443  888999999999 89999999999


Q ss_pred             CeEEEEeCCCCe--------E-E-EecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          451 GKVRIWEVRRCQ--------V-V-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       451 g~I~Iwd~~~~~--------~-~-~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      +.|++|+.....        . . ...+|...|++++|+|++ .+|++|+.||+|+||++.+++...+
T Consensus       274 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            999999987542        1 1 235789999999999998 5999999999999999998876544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.98  E-value=4.2e-30  Score=264.04  Aligned_cols=266  Identities=20%  Similarity=0.276  Sum_probs=209.3

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccc------------eEEcccCCCEEEEEEccCCCEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQYLA  300 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~~La  300 (531)
                      .|...+.+++|+|+|++||+|+ ++.++||++..+..... +...            .....+...|++++|+|+|++|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            4667888999999999999986 68999999986543211 0000            00012334599999999999999


Q ss_pred             EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      +|+.|++|+|||+.+++....+..+...+.++.|.++..                ..++++.++.+.+|+.....    .
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~----------------~l~s~s~d~~v~iwd~~~~~----~  199 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----------------KLVSGSGDRTVRIWDLRTGQ----C  199 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTE----E
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC----------------EEEEecCCCcEEEEECCCCe----e
Confidence            999999999999999988877777777777777665432                23456778899999876532    2


Q ss_pred             eeEeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEe--------ecCCceEEEEEeeCCCCEEEEEeCC
Q 009614          381 LHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       381 ~~~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--------~h~~~V~sv~fsp~d~~~l~sgs~D  450 (531)
                      ...+ .+...+.+++|+| ++ +|++|+.|++|++||++++..+..+        .|...|++++|+| ++++|++|+.|
T Consensus       200 ~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d  277 (393)
T 1erj_A          200 SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD  277 (393)
T ss_dssp             EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCC
Confidence            3333 3567899999999 66 9999999999999999999888766        3889999999999 99999999999


Q ss_pred             CeEEEEeCCCCe-------------EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccccc
Q 009614          451 GKVRIWEVRRCQ-------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK  517 (531)
Q Consensus       451 g~I~Iwd~~~~~-------------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk  517 (531)
                      +.|++||+++..             ...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..++        
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--------  349 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--------  349 (393)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--------
T ss_pred             CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--------
Confidence            999999997632             23567899999999999999999999999999999999998876543        


Q ss_pred             CCCceeeeEEEee
Q 009614          518 LPGKRITGFQVVK  530 (531)
Q Consensus       518 ~~~~~It~l~f~p  530 (531)
                      .|...|++++|+|
T Consensus       350 ~h~~~v~~v~~~~  362 (393)
T 1erj_A          350 GHRNSVISVAVAN  362 (393)
T ss_dssp             CCSSCEEEEEECS
T ss_pred             CCCCCEEEEEecC
Confidence            2346788888764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=1.6e-30  Score=286.90  Aligned_cols=284  Identities=19%  Similarity=0.277  Sum_probs=227.8

Q ss_pred             cccccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       226 ~~~~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      +..+.+..|.+.|.+++|+|++ .+|++|+.|+.|+||++.......  ......+.+|...|++++|+|++++|++|+.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--GVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--CEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--ccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            3445678899999999999875 789999999999999997644321  1233568899999999999999999999999


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      ||+|+|||+.++.....+..+...+.++.+.++..                ..++++.++.+.+|+...... .......
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~----------------~l~s~s~D~~i~iwd~~~~~~-~~~~~~~  513 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR----------------QIVSASRDRTIKLWNTLGECK-YTISEGG  513 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS----------------CEEEEETTSCEEEECTTSCEE-EEECSST
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC----------------EEEEEeCCCEEEEEECCCCcc-eeeccCC
Confidence            99999999999988888888887777777765432                235667788899998643111 0011122


Q ss_pred             ecCCCCeeEEEEcCCC---eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          385 QGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~---~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .+|...|.+++|+|++   .|++++.|++|++||++++++...+. |...|++++|+| ++++|++|+.||.|+|||+.+
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC
Confidence            5689999999999986   79999999999999999999888885 999999999999 999999999999999999999


Q ss_pred             CeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccc-----------cCCCceeeeEEEe
Q 009614          461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK-----------KLPGKRITGFQVV  529 (531)
Q Consensus       461 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~k-----------k~~~~~It~l~f~  529 (531)
                      ++.+....+...|.+++|+|++.+|++++ ++.|+|||+.+++++..+........           +.+...+++++|+
T Consensus       593 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s  671 (694)
T 3dm0_A          593 GKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS  671 (694)
T ss_dssp             TEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred             CceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence            99887666778899999999998887766 56699999999999887765432211           1112247889988


Q ss_pred             e
Q 009614          530 K  530 (531)
Q Consensus       530 p  530 (531)
                      |
T Consensus       672 p  672 (694)
T 3dm0_A          672 A  672 (694)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.2e-31  Score=263.71  Aligned_cols=248  Identities=20%  Similarity=0.214  Sum_probs=185.9

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      |...+.+++|+|++.+|++|+.|+.|+||+................+.+|.+.|++++|+|+|++||+|+.|++|++||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            56778889999999999999999999999986432211122344568899999999999999999999999999999999


Q ss_pred             ccC----ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          314 IEH----ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       314 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      ...    +.+..+..+...+.++.|.++.                ...++++.++.+.+|+.....  .+++..+.+|.+
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~----------------~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~  198 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSE----------------ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEG  198 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSS----------------SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSS
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCC----------------CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCC
Confidence            432    2344455555556666655432                123566778888888754321  135778899999


Q ss_pred             CeeEEEEcCC--C-eEEEEeCCCcEEEEECCCC--------eEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614          390 EVLDLSWSKN--G-FLLSSSADKTVRLWQVGID--------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (531)
Q Consensus       390 ~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~--------~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw  456 (531)
                      .|.+++|+|+  + +|++++.|++|++||+..+        .+...+.  |...|++++|+| + .+|++++.||.|+||
T Consensus       199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw  276 (330)
T 2hes_X          199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVY  276 (330)
T ss_dssp             CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEE
T ss_pred             cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEE
Confidence            9999999998  5 8999999999999998754        3444443  889999999997 4 489999999999999


Q ss_pred             eCCCCe--EE-E-ecCCCC-ceEEEEEcc--CCCEEEEEeCCCcEEEEeCCC
Q 009614          457 EVRRCQ--VV-D-YTDIRE-IVSAVCYCP--DGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       457 d~~~~~--~~-~-~~~~~~-~v~~v~~sp--dg~~l~sgs~dg~I~iwd~~~  501 (531)
                      |..+++  .+ . ...|.. .|++++|+|  ++++|++|+.||+|+|||+..
T Consensus       277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            998874  33 2 356776 899999999  789999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.98  E-value=1e-30  Score=263.42  Aligned_cols=253  Identities=17%  Similarity=0.266  Sum_probs=197.5

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...+.+++|+|++.++++|+.|+.|++||+.+..       ....+.+|...|++++|+|++++|++|+.|++|+
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~  143 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK  143 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC-------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence            456778888999999999999999999999999998543       3346889999999999999999999999999999


Q ss_pred             EEEcccCccccce--ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          310 VWKVIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       310 iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      +||+.........  ..+...+.++.+.+........      .......+.++.++.+.+|+..     ......+.+|
T Consensus       144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~h  212 (343)
T 2xzm_R          144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV------QPFAPYFASVGWDGRLKVWNTN-----FQIRYTFKAH  212 (343)
T ss_dssp             EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCC------CSSCCEEEEEETTSEEEEEETT-----TEEEEEEECC
T ss_pred             EEeccCCceeeeecccCCCceeeeeeecccccccccc------CCCCCEEEEEcCCCEEEEEcCC-----CceeEEEcCc
Confidence            9999743221111  1334445556655543211000      0011234667888999999843     3456678899


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEEC-CCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl-~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-  464 (531)
                      ...|.+++|+|++ +|++|+.|++|++||+ ........+.+...|++++|+| ++.+++++ .|+.|++||+.+++.. 
T Consensus       213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred             cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence            9999999999999 9999999999999999 4555666677778899999999 88877655 5788999999876532 


Q ss_pred             --Eec-----------CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          465 --DYT-----------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       465 --~~~-----------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                        .+.           +|...|++++|+|+|++|++|+.||.|++|++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence              222           57788999999999999999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.9e-30  Score=256.28  Aligned_cols=274  Identities=15%  Similarity=0.175  Sum_probs=223.9

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      ..+.+|...+.+++|+|++++|++|+.||.|+||++....       ....+.+|...|++++|+|++++|++++.||.|
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            3577888999999999999999999999999999987543       335688999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc-------cCcce
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-------LEKPL  381 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  381 (531)
                      ++||+.+++....+. ....+.++.+.+.....+....  .         ....++.+.+|+......       ...++
T Consensus        99 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--~---------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           99 KLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILD--N---------VMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEEC--C---------BTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             EEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecC--C---------ccCCCCEEEEEEecCCccceeeccccccee
Confidence            999999998877776 4555666666554432221111  0         112235666666543322       12355


Q ss_pred             eEeecCCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCC-CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614          382 HEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (531)
Q Consensus       382 ~~~~~h~~--~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~-~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw  456 (531)
                      ..+..|.+  .+.+++|+|++ +|++++.|+.|++||+++ .+.+..+. |...|.+++|+| ++++|++++.|+.|++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEE
Confidence            66777777  99999999999 999999999999999998 77777776 899999999999 99999999999999999


Q ss_pred             eCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCeEEEEeeeeecccccCCCce
Q 009614          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG--------------NCRFYDIKDNQLYQQNQICLQGKKKLPGKR  522 (531)
Q Consensus       457 d~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--------------~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~  522 (531)
                      |+.+++.+....+...+..++|+|+++++++++.++              .+++||+.+++.+..+.        .+...
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~  317 (369)
T 3zwl_B          246 DVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--------GHFGP  317 (369)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--------CCSSC
T ss_pred             ECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--------cccCc
Confidence            999999887666889999999999999999999988              89999999998877553        23468


Q ss_pred             eeeEEEee
Q 009614          523 ITGFQVVK  530 (531)
Q Consensus       523 It~l~f~p  530 (531)
                      |++++|+|
T Consensus       318 v~~~~~s~  325 (369)
T 3zwl_B          318 LNTVAISP  325 (369)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEECC
Confidence            89999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2e-30  Score=262.64  Aligned_cols=256  Identities=18%  Similarity=0.239  Sum_probs=206.4

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC--CCEEEEEeCC
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGED  305 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~D  305 (531)
                      ...+.+|...+.+++|+|++++||+|+.||.|+||++....     ......+.+|.+.|++++|+++  +++|++|+.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            34577888999999999999999999999999999987322     2233468899999999999987  9999999999


Q ss_pred             CcEEEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          306 GTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       306 g~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      |.|++||+.+++  ....+..+...+.++.+.+....              ...+.++.++.+.+|+......  .....
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~d~~i~v~d~~~~~~--~~~~~  142 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGT--TSPII  142 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCTTSC--CCEEE
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC--------------CEEEEecCCCcEEEEecCCCCc--eeeEE
Confidence            999999999886  55555556666667766655211              1234556778888988765422  23456


Q ss_pred             eecCCCCeeEEEEcC-------------CC-eEEEEeCCCcEEEEECCCCe----EEEEee-cCCceEEEEEeeCC---C
Q 009614          384 FQGHSSEVLDLSWSK-------------NG-FLLSSSADKTVRLWQVGIDR----CLRVFS-HNNYVTSVAFNPVD---D  441 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp-------------~~-~l~s~s~Dg~V~lwdl~~~~----~l~~~~-h~~~V~sv~fsp~d---~  441 (531)
                      +.+|...|.+++|+|             ++ +|++++.|+.|++||++++.    ++..+. |...|++++|+| +   +
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~  221 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLR  221 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSS
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCC
Confidence            778999999999999             46 99999999999999998764    333443 899999999999 7   8


Q ss_pred             CEEEEEeCCCeEEEEeCCCCe----EE--EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          442 NYFISGSIDGKVRIWEVRRCQ----VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~~~----~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      .+|++++.||.|+|||+.++.    ..  ....|...|++++|+|+|++|++++.||.|++|++..+...
T Consensus       222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            999999999999999999863    22  23447889999999999999999999999999999854433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=7.6e-30  Score=274.45  Aligned_cols=274  Identities=23%  Similarity=0.324  Sum_probs=217.8

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|.+.|.+++|+|||++||+|+.|+.|+|||...        ...+.+.+|.+.|++|+|+|+|++||+++.|++|+|
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--------~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~v   83 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL   83 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--------CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            677889999999999999999999999999999532        234578999999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc-------------------------------c-------
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK-------------------------------I-------  352 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~-------  352 (531)
                      ||+ +++.+..+..+...+.++.|.++....+.+ ..+...                               +       
T Consensus        84 Wd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  161 (577)
T 2ymu_A           84 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK  161 (577)
T ss_dssp             EET-TSCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEE-cCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccc
Confidence            996 567777777777777777776654322111 000000                               0       


Q ss_pred             -----------------------------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE
Q 009614          353 -----------------------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL  402 (531)
Q Consensus       353 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l  402 (531)
                                                   .....+.++.++.+.+|+.     ..+.+..+.+|...|.+++|+|++ +|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~s~dg~~l  236 (577)
T 2ymu_A          162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTI  236 (577)
T ss_dssp             EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-----TSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-----CCcEEEEEecCCCCEEEEEECCCCCEE
Confidence                                         0011234455666667764     245677889999999999999999 99


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccC
Q 009614          403 LSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (531)
Q Consensus       403 ~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spd  481 (531)
                      ++++.|+.|++||.. ++.+..+ .|...|++++|+| ++++|++++.|+.|++||........+.+|...|++++|+|+
T Consensus       237 ~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~  314 (577)
T 2ymu_A          237 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD  314 (577)
T ss_dssp             EEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCC
Confidence            999999999999975 4555555 4999999999999 999999999999999999876666678899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       482 g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +++|++++.||.|++||+....+.. .        ..+...|++++|+|
T Consensus       315 ~~~l~t~~~d~~i~~w~~~~~~~~~-~--------~~~~~~v~~~~~s~  354 (577)
T 2ymu_A          315 GQTIASASDDKTVKLWNRNGQHLQT-L--------TGHSSSVWGVAFSP  354 (577)
T ss_dssp             SSEEEEEETTSCEEEEETTSCEEEE-E--------CCCSSCEEEEEECT
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEE-E--------eCCCCCEEEEEECC
Confidence            9999999999999999987665432 1        22346788888876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=5.9e-30  Score=262.96  Aligned_cols=241  Identities=22%  Similarity=0.333  Sum_probs=191.1

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+.+++|+|+|++|++|+.|+.|+|||+....       ....+.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            46689999999999999999999999997543       33468899999999999999999999999999999999998


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC---cceeEeecCCCCeeE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE---KPLHEFQGHSSEVLD  393 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~I~~  393 (531)
                      +....+... ..+.++.+.+...               ...+.++.++.+.+|+........   .......+|...|.+
T Consensus       198 ~~~~~~~~~-~~v~~~~~~~~~~---------------~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          198 QCSLTLSIE-DGVTTVAVSPGDG---------------KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEEEEEECS-SCEEEEEECSTTC---------------CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             eeEEEEEcC-CCcEEEEEECCCC---------------CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            876555432 2333333333221               223456778888899876533211   111223679999999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCC------------eEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGID------------RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~------------~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      ++|+|++ +|++++.|++|++||+++.            .+...+ .|...|.+++|+| ++.+|++|+.|+.|++||+.
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence            9999999 9999999999999999753            233344 4999999999999 99999999999999999999


Q ss_pred             CCeEE-EecCCCCceEEEEEcc------CCCEEEEEeCCCcEEEEeCCC
Q 009614          460 RCQVV-DYTDIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       460 ~~~~~-~~~~~~~~v~~v~~sp------dg~~l~sgs~dg~I~iwd~~~  501 (531)
                      +++.+ .+.+|...|.+++|+|      ++++|++|+.||+|+||++..
T Consensus       341 ~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            98876 5788999999999986      688999999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.1e-29  Score=251.55  Aligned_cols=244  Identities=19%  Similarity=0.261  Sum_probs=198.3

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +..|...+.+++|+|++++|++|+.|+.|++||+....       ....+.+|.+.|++++|+|++++|++|+.||+|++
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~l  123 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEE
Confidence            44456677889999999999999999999999998544       33468899999999999999999999999999999


Q ss_pred             EEcccCc-cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          311 WKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       311 Wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      ||+.++. ....+..+...+.++.|.+....               ..++++.++.+.+|+......   ......+|..
T Consensus       124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~---------------~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~~  185 (304)
T 2ynn_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPS---------------TFASGCLDRTVKVWSLGQSTP---NFTLTTGQER  185 (304)
T ss_dssp             EEGGGTTEEEEEECCCCSCEEEEEECTTCTT---------------EEEEEETTSEEEEEETTCSSC---SEEEECCCTT
T ss_pred             EECCCCcchhhhhcccCCcEEEEEECCCCCC---------------EEEEEeCCCeEEEEECCCCCc---cceeccCCcC
Confidence            9998874 33455666666666666553322               235667888999998754321   1223345778


Q ss_pred             CeeEEEEcC--CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          390 EVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       390 ~I~~l~~sp--~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      .+..+.|+|  ++ +|++++.|++|++||+++++++..+. |...|++++|+| ++.+|++|+.||+|+|||+.+++++.
T Consensus       186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceee
Confidence            899999987  45 99999999999999999999999886 999999999999 99999999999999999999998874


Q ss_pred             -ecCCCCceEEEEEccCCC--EEEEEeCCCcEEEEeCCC
Q 009614          466 -YTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       466 -~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~~  501 (531)
                       +..+...+.+++|+|++.  ++++|+.| .+.+|++.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          265 TLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             eccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence             677888999999999885  46777654 577888764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.9e-29  Score=271.37  Aligned_cols=259  Identities=23%  Similarity=0.340  Sum_probs=214.5

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|...+.+++|+|++.++++++.|+.|++|+.....        ...+.+|...|++++|+|+|++|++|+.||.|++
T Consensus       299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            45566777789999999999999999999999976432        2357889999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |+. +++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+..     .+.+..+.+|...
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~----------------~l~~~~~d~~v~~~~~~-----~~~~~~~~~~~~~  428 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQ----------------TIASASDDKTVKLWNRN-----GQLLQTLTGHSSS  428 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSS----------------CEEEEETTSEEEEECTT-----CCEEEEEECCSSC
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCC----------------EEEEEeCCCEEEEEeCC-----CCEEEEecCCCCC
Confidence            995 5666666766666666666655432                22445667788888743     4567888999999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD  468 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~  468 (531)
                      |++++|+|++ +|++++.|++|++||+.. +.+..+ .|...|++++|+| ++++|++++.|+.|+|||.....+..+.+
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~~~~~~~~~  506 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG  506 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence            9999999999 999999999999999754 555555 5999999999999 99999999999999999976555557889


Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |...|++++|+|||++|++++.||.|+|||. +++++..+.        .|...|++++|+|
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~~v~~~~fs~  559 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSSSVWGVAFSP  559 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSSCEEEEEECT
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCCCEEEEEEcC
Confidence            9999999999999999999999999999996 466555432        3457899999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.2e-29  Score=257.46  Aligned_cols=284  Identities=13%  Similarity=0.117  Sum_probs=224.8

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC----C---CEEE
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----G---QYLA  300 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~La  300 (531)
                      ...+..|.+.+.+++|+|  .+|++|+.||.|+||++...... ........+.+|...|++++|+|+    +   ++|+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            345667888999999999  89999999999999999865521 123345568899999999999999    9   9999


Q ss_pred             EEeCCCcEEEEEcccCcc-----ccceecC-----CCCCeeEEEe----ecCCcceeeeeccccccccccccccCCCceE
Q 009614          301 SGGEDGTVRVWKVIEHER-----LDGFDVQ-----DTDPSCLYFT----INHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (531)
                      +++.||.|++|++.+++.     ...+..+     ...+.++.+.    +....               ..+.++.++.+
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~l~~~~~dg~i  150 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH---------------RLVATDVKGTT  150 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE---------------EEEEEETTSCE
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce---------------EEEEEeCCCcE
Confidence            999999999999998886     6666655     3556666666    33221               02445567788


Q ss_pred             EEeCCcc------cccc-CcceeEe-------ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee----c-
Q 009614          367 VVLPPKV------FRLL-EKPLHEF-------QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----H-  427 (531)
Q Consensus       367 ~~~~~~~------~~~~-~~~~~~~-------~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~----h-  427 (531)
                      .+|+...      .... -.+...+       ..|...|.+++|+|+++|++++.|+.|++||+++++++..+.    | 
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence            8887765      2221 1122255       448999999999998888899999999999999999998886    5 


Q ss_pred             --CCceEEEEEeeCCCCEEEEEeCC---CeEEEEeCCCCeEEE-ecC-------------CCCceEEEEEccCCCEEEEE
Q 009614          428 --NNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVVD-YTD-------------IREIVSAVCYCPDGKGGIVG  488 (531)
Q Consensus       428 --~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iwd~~~~~~~~-~~~-------------~~~~v~~v~~spdg~~l~sg  488 (531)
                        ...|++++|+| ++.+|++++.|   +.|++||+.+++.+. +..             |...|++++|+|++++|+++
T Consensus       231 ~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          231 NNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence              89999999999 89999999999   999999999988764 555             89999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeEEEEeeeeecc--c-----------ccCCCceeeeEEEee
Q 009614          489 TMTGNCRFYDIKDNQLYQQNQICLQG--K-----------KKLPGKRITGFQVVK  530 (531)
Q Consensus       489 s~dg~I~iwd~~~~~l~~~~~~~~~~--~-----------kk~~~~~It~l~f~p  530 (531)
                      +.||.|++||+.+++++..+......  .           ...+...|++++|+|
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence            99999999999999988877632110  0           011268899999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-29  Score=252.86  Aligned_cols=261  Identities=16%  Similarity=0.185  Sum_probs=205.2

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--CCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I  308 (531)
                      +.+|.+.+.+++|+|++.+|++|+.||.|+||++......   ......+.+|...|++++|+|  ++++|++|+.||.|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4568888999999999999999999999999999864432   123456789999999999999  69999999999999


Q ss_pred             EEEEcccCc---------cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          309 RVWKVIEHE---------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       309 ~iWd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      ++||+.++.         ....+..+...+.++.+.+....              ...+.++.++.+.+|+.........
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG--------------LKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC--------------cEEEEecCCCcEEEecCCChHHhcc
Confidence            999998873         34444445555555555544211              2234566788889998765433211


Q ss_pred             ce---------eEeecCCCCeeEEEEcCC---C-eEEEEeCCCcEEEEECCCCeE--EEEee-cCCceEEEEEeeCCC--
Q 009614          380 PL---------HEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRC--LRVFS-HNNYVTSVAFNPVDD--  441 (531)
Q Consensus       380 ~~---------~~~~~h~~~I~~l~~sp~---~-~l~s~s~Dg~V~lwdl~~~~~--l~~~~-h~~~V~sv~fsp~d~--  441 (531)
                      ..         ....+|...+.+++|+|+   + +|++++.|+.+.+|+...++.  +..+. |...|++++|+| ++  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~  228 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGR  228 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSC
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCC
Confidence            10         112368889999999997   5 999999999999998887765  44443 899999999999 76  


Q ss_pred             --CEEEEEeCCCeEEEEeCCCC----------------------------------------------eEE-EecCCCCc
Q 009614          442 --NYFISGSIDGKVRIWEVRRC----------------------------------------------QVV-DYTDIREI  472 (531)
Q Consensus       442 --~~l~sgs~Dg~I~Iwd~~~~----------------------------------------------~~~-~~~~~~~~  472 (531)
                        ++|++|+.||.|++||++.+                                              +.+ .+.+|...
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  308 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE  308 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred             cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence              89999999999999999874                                              233 46778999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      |++++|+|++++|++|+.||.|+||++.+++....++
T Consensus       309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence            9999999999999999999999999999987766554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.4e-29  Score=253.36  Aligned_cols=248  Identities=14%  Similarity=0.143  Sum_probs=198.9

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .|...+.+++|+|+++++++|+.++.|++|++.....     .....+.+|...|++++|+|++++|++++.||.|++||
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            3567888999999999999999999999999875431     13356789999999999999999999999999999999


Q ss_pred             cccCccccce--ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          313 VIEHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       313 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      +.+++....+  ..+...+.++.+.++..                ..+.++.++.+.+|+...............+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEK----------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST  144 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSS----------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCC----------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence            9887654433  23344455555544321                22344556777777765432111122334678999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEEC------------------CCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQV------------------GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl------------------~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D  450 (531)
                      |.+++|+|++ +|++++.|+.|++||+                  ..++++..+. |...|++++|+| ++++|++++.|
T Consensus       145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  223 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHD  223 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETT
T ss_pred             eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCC
Confidence            9999999999 9999999999999995                  4677888874 899999999999 99999999999


Q ss_pred             CeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC--Ce
Q 009614          451 GKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD--NQ  503 (531)
Q Consensus       451 g~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~--~~  503 (531)
                      +.|++||+++++.+ .+..|...|++++|+|++.+|++| .||.|++|++.+  ++
T Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~  278 (372)
T 1k8k_C          224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK  278 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred             CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence            99999999988776 577888899999999999988887 899999999988  64

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-29  Score=257.09  Aligned_cols=240  Identities=21%  Similarity=0.320  Sum_probs=202.5

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .|...+.+++|+|++.+|++|+.+|.|++|+...        .....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN  177 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence            3566888999999999999999999999999331        23346788999999999999999999999999999999


Q ss_pred             cccCccccceecCCCC---------------CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc
Q 009614          313 VIEHERLDGFDVQDTD---------------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (531)
                      +.+++....+..+...               +.++.+.++                 ...+.++.++.+.+|+...    
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~i~~~d~~~----  236 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-----------------DKFVIPGPKGAIFVYQITE----  236 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEET-----------------TEEEEECGGGCEEEEETTC----
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-----------------CEEEEEcCCCeEEEEEcCC----
Confidence            9999887777655544               333333322                 1235566778888888765    


Q ss_pred             CcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       378 ~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      .+++..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++ +|++++.|+.|++
T Consensus       237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i  314 (425)
T 1r5m_A          237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRL  314 (425)
T ss_dssp             SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEE
T ss_pred             CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEE
Confidence            34567788999999999999999 99999999999999999998888886 899999999999 77 9999999999999


Q ss_pred             EeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          456 WEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       456 wd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      ||+.+++.+. +..|...|++++|+|++++|++++.||.|++||+.+++
T Consensus       315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9999998774 67788999999999999999999999999999998877

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.6e-30  Score=262.88  Aligned_cols=243  Identities=11%  Similarity=0.088  Sum_probs=187.4

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +...+.+++|+|++++||+|+.|+.|+||++.....     .....+.+|.+.|++++|+|++++|++|+.||+|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            346788999999999999999999999999985421     223357789999999999999999999999999999999


Q ss_pred             ccCc---cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec-CCC
Q 009614          314 IEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSS  389 (531)
Q Consensus       314 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~  389 (531)
                      .++.   ....+..+...+.++.+.++..                ..+.++.++.+.+|+....... .....+.+ |..
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~h~~  147 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNED----------------KFAVGSGARVISVCYFEQENDW-WVSKHLKRPLRS  147 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSS----------------CCEEEESSSCEEECCC-----C-CCCEEECSSCCS
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCC----------------EEEEEecCCeEEEEEECCcccc-eeeeEeecccCC
Confidence            8877   3334444555555555544321                2345667788899987653311 13556667 999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECC------------------CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG------------------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~------------------~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D  450 (531)
                      .|.+++|+|++ +|++++.|++|++||+.                  .++++..+.|...|++++|+| ++++|++++.|
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d  226 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHD  226 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-TSSCEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-CCCEEEEEeCC
Confidence            99999999999 99999999999999985                  355666668999999999999 99999999999


Q ss_pred             CeEEEEeCCCCeE----E-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          451 GKVRIWEVRRCQV----V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       451 g~I~Iwd~~~~~~----~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      |.|+|||+.+++.    + .+..|...|++++|+|+|++|++|+.++.+ +|+..
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999998865    3 578899999999999999999998866655 77665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-30  Score=268.04  Aligned_cols=268  Identities=10%  Similarity=0.144  Sum_probs=200.6

Q ss_pred             eeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       232 ~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      .+|.+.+.+++|+| ++.+||+|+.||.|+||++....... .......+ +|.+.|++|+|+|++++|++|+.||+|++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  137 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIV  137 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence            44667888999999 99999999999999999987522111 11112222 59999999999999999999999999999


Q ss_pred             EEcc---cCccccceecCCCCCeeEEEeec-CCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          311 WKVI---EHERLDGFDVQDTDPSCLYFTIN-HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       311 Wd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      ||+.   +++.......+  .+..+.+.+. ....+..+.... .......+.++.++.+.+|+...    .+.+..+.+
T Consensus       138 wd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~  210 (437)
T 3gre_A          138 LKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFV-NEEKSLLVALTNLSRVIIFDIRT----LERLQIIEN  210 (437)
T ss_dssp             EEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEE-CSSCEEEEEEETTSEEEEEETTT----CCEEEEEEC
T ss_pred             EEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEE-cCCCCEEEEEeCCCeEEEEeCCC----CeeeEEEcc
Confidence            9995   55443333221  1111111111 111111111000 00123456778889999999876    345777777


Q ss_pred             --CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeC---CCCEEEEEeCCCeEEEEeC
Q 009614          387 --HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV---DDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       387 --h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~---d~~~l~sgs~Dg~I~Iwd~  458 (531)
                        |.+.|++++|+|++ +|++|+.|++|++||+++++++..+  .|...|++++|+|.   ++.+|++|+.||.|+|||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence              89999999999999 9999999999999999999999987  57789999977662   5779999999999999999


Q ss_pred             CCCeEEE-ecC--------------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          459 RRCQVVD-YTD--------------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       459 ~~~~~~~-~~~--------------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .+++.+. +.+                          |...|++++|+ ++++|++|+.||.|++||+.+++....+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            9988663 222                          55668899999 78999999999999999999988776554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=242.65  Aligned_cols=258  Identities=21%  Similarity=0.281  Sum_probs=210.2

Q ss_pred             cccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ...+.+|.+.+.+++| |++.++++|+.||.|++|++....       ....+..|...|.+++|+|++++|++|+.||.
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence            3456778889999999 999999999999999999986433       33457789999999999999999999999999


Q ss_pred             EEEEEcccCc---cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          308 VRVWKVIEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       308 I~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      |++|++....   ....+..+...+.++.+             .     ....+.++.++.+.+|+      ....+..+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------~-----~~~l~~~~~d~~i~~~d------~~~~~~~~  138 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF-------------Q-----DGVVISGSWDKTAKVWK------EGSLVYNL  138 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEE-------------E-----TTEEEEEETTSEEEEEE------TTEEEEEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEe-------------c-----CCEEEEEeCCCCEEEEc------CCcEEEec
Confidence            9999987653   33334444444444333             1     12345667788899997      34567788


Q ss_pred             ecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          385 QGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       385 ~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ..|...|.++.|.| ++ +|++++.|+.|++||  ..+.+..+.  |...|.+++|+| ++. +++++.||.|++||+++
T Consensus       139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT
T ss_pred             ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc
Confidence            89999999999998 66 999999999999999  455555554  899999999999 776 99999999999999999


Q ss_pred             CeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       461 ~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ++.+ .+..|...|++++|+|++ .|++++.||.|++||+.+++++..+..        +...|++++|+|
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~  276 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL--------PAISIWSVDCMS  276 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC--------SSSCEEEEEECT
T ss_pred             hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec--------cCceEEEEEEcc
Confidence            8877 477899999999999999 589999999999999999988776542        235788888876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.8e-28  Score=256.70  Aligned_cols=276  Identities=18%  Similarity=0.280  Sum_probs=222.1

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...+.. ++.+++.++++|+.||.|++||+.+..       ....+.+|.+.|++++|+|++ +|++|+.||+|+
T Consensus       116 ~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          116 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             EEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            45566655432 455577899999999999999987543       345688999999999999988 999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcce-e---------eeecccccc---------------------------
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL-I---------PIDVDKEKI---------------------------  352 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~---------------------------  352 (531)
                      +||+.+++....+..+...+.++.+.+...... +         .++......                           
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            999999999888888888888888876433222 2         122111110                           


Q ss_pred             ------------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC
Q 009614          353 ------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID  419 (531)
Q Consensus       353 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~  419 (531)
                                  .....+.++.++.+.+|+...    .+++..+.+|...|.+++|+|++ +|++|+.|++|++||++++
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence                        012345567788888888765    34577888999999999999998 9999999999999999999


Q ss_pred             eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       420 ~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      +++..+. |...|++++|++   .+|++++.||.|++||+.++.......+...+..++|+|++++|++|+ ||.|++||
T Consensus       343 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            9999886 999999999964   899999999999999999988776666777888899999999999998 99999999


Q ss_pred             CCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          499 IKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       499 ~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      +.+++++....       ..+...|++++|+
T Consensus       419 ~~~g~~~~~~~-------~~~~~~v~~v~~~  442 (464)
T 3v7d_B          419 LRSGKLVHANI-------LKDADQIWSVNFK  442 (464)
T ss_dssp             TTTCCEEESCT-------TTTCSEEEEEEEE
T ss_pred             CCCCcEEehhh-------ccCCCcEEEEEec
Confidence            99999876422       2235788888886

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-28  Score=255.10  Aligned_cols=261  Identities=18%  Similarity=0.280  Sum_probs=202.2

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      +.++|+++ ++||+|. |++|+|||..++...     ..-.+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.
T Consensus       109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             BCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             eeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence            45889976 4777775 899999999865432     1113457888999999999999999999999999999999999


Q ss_pred             ccceecCCCCCeeEEEeec------CCcceeeeecccccc-------------------ccccccccCCCceEEEeCCcc
Q 009614          319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKEKI-------------------DKTKSLRKSSDLTCVVLPPKV  373 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  373 (531)
                      +..+..+...+.++.+...      ....+..+.......                   .......++.++.+.+|+...
T Consensus       182 ~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            8888877776665544211      011111111110000                   112235566778888888776


Q ss_pred             ccccCcceeEeecCCCCeeEEEEcCCC--eEEE--EeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe-
Q 009614          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS--SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-  448 (531)
Q Consensus       374 ~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s--~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-  448 (531)
                      .......+.....|...|.+++|+|.+  .+++  |+.|++|++||+.+++++..+.+...+.++.|+| +++.+++++ 
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~sg  340 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG  340 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC-CCCeEEEEEe
Confidence            655556677888999999999999987  5554  4579999999999999999999889999999999 888877765 


Q ss_pred             -CCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       449 -~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                       .|+.|+|||+.+++++ .+.+|...|++++|+|||++|++|+.||+|+|||+.+.....+
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence             7899999999999877 5889999999999999999999999999999999987655443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1e-29  Score=264.66  Aligned_cols=267  Identities=15%  Similarity=0.184  Sum_probs=197.9

Q ss_pred             cceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCc
Q 009614          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGT  307 (531)
Q Consensus       230 ~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~  307 (531)
                      ....|...|.+++|+| ++.+||+|+.||.|+|||+......     ....+.+|.+.|++|+|+| ++++|+||+.||+
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            3455677899999999 5678999999999999998754432     1223568999999999998 7899999999999


Q ss_pred             EEEEEcccCccccceecCCC--CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVIEHERLDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      |++||+.++........+..  .+.++.+.++.                ...+.++.++.+.+|+..     .+.+..+.
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~~g~~dg~i~~wd~~-----~~~~~~~~  247 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS----------------RMVVTGDNVGNVILLNMD-----GKELWNLR  247 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT----------------TEEEEECSSSBEEEEESS-----SCBCCCSB
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCC----------------CEEEEEeCCCcEeeeccC-----cceeEEEe
Confidence            99999976543222221111  12233333221                223566778889998864     34567788


Q ss_pred             cCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      +|...|.+++|+|++  +|++++.|++|++||+++.+....+    .|...|++++|+| ++.+|++++.||.|+|||+.
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESS
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECC
Confidence            999999999999987  7889999999999999887654433    4899999999999 99999999999999999999


Q ss_pred             CCeEE-EecCCCC------ceEEEEEccCCCEEEEEeC------------CCcEEEEeCCCCeEEEEeeeeecccccCCC
Q 009614          460 RCQVV-DYTDIRE------IVSAVCYCPDGKGGIVGTM------------TGNCRFYDIKDNQLYQQNQICLQGKKKLPG  520 (531)
Q Consensus       460 ~~~~~-~~~~~~~------~v~~v~~spdg~~l~sgs~------------dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~  520 (531)
                      ++... .+..|..      .+..++|+|++.++++++.            ++.|++||+.+++++....       ..+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------~~~~  399 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------DPES  399 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------CSSC
T ss_pred             CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------CCCC
Confidence            87654 3333322      2345678888777777653            3579999999998876542       1233


Q ss_pred             ceeeeE-EEee
Q 009614          521 KRITGF-QVVK  530 (531)
Q Consensus       521 ~~It~l-~f~p  530 (531)
                      ..|+++ +|+|
T Consensus       400 ~~v~s~~~fsp  410 (435)
T 4e54_B          400 SGISSLNEFNP  410 (435)
T ss_dssp             CCCCCEEEECT
T ss_pred             CcEEEEEEECC
Confidence            456665 4665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.5e-28  Score=241.44  Aligned_cols=256  Identities=18%  Similarity=0.269  Sum_probs=198.7

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      +.++|++++ +||+| .|++|+|||..++....     ...+.+|...|++|+|+|++++||+|+.||+|++|++.+++.
T Consensus        29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-----~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-----EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-----EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            568999886 77776 58999999998654321     113457888999999999999999999999999999999998


Q ss_pred             ccceecCCCCCeeEEEeec------CCcceeeeecccc------------c-------cccccccccCCCceEEEeCCcc
Q 009614          319 LDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKE------------K-------IDKTKSLRKSSDLTCVVLPPKV  373 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~~  373 (531)
                      +..+..+.....+......      ....+..+.....            .       ......++++.++.+.+|+...
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            8888776655443332111      0000100000000            0       0112345677888999999877


Q ss_pred             ccccCcceeEeecCCCCeeEEEEcCCC----eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe-
Q 009614          374 FRLLEKPLHEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-  448 (531)
Q Consensus       374 ~~~~~~~~~~~~~h~~~I~~l~~sp~~----~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-  448 (531)
                      .............|.+.|.++.++|.+    .+++++.+++|++||...........+...+..+.|+| ++..+++++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEEE
Confidence            666556677778899999999999976    33466788999999999999999888999999999999 777776654 


Q ss_pred             -CCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          449 -IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       449 -~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                       .|+.|+|||+.+++++ .+.+|...|++++|+|||++|++|+.||+|+|||+.+.
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence             7999999999999887 48889999999999999999999999999999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=2e-28  Score=242.73  Aligned_cols=243  Identities=17%  Similarity=0.309  Sum_probs=199.6

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +..|...+.+++|+|++++|++|+.|+.|++||+....       ....+.+|...|.+++|+|++++|++|+.||.|++
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI  133 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            34566778889999999999999999999999998543       33468899999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSS  389 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~  389 (531)
                      ||+.+++....+..+...+.++.+.++..                ..+.++.++.+.+|+.....    .+..+ ..|..
T Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~  193 (312)
T 4ery_A          134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGS----------------LIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNP  193 (312)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTCC----EEEEECCSSCC
T ss_pred             EECCCCEEEEEecCCCCcEEEEEEcCCCC----------------EEEEEeCCCcEEEEECCCCc----eeeEEeccCCC
Confidence            99999988877777666666666654332                23455677888899876532    23333 45677


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCce--EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV--TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-  464 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V--~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-  464 (531)
                      .+..++|+|++ +|++++.|+.|++||+++++++..+. |...+  ....+++.++.+|++|+.||.|++||+.+++++ 
T Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            89999999999 99999999999999999999988885 54433  334455448899999999999999999999877 


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEe--CCCcEEEEeCC
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIK  500 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~  500 (531)
                      .+.+|...|.+++|+|++++|++++  .|+.|++|+..
T Consensus       274 ~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            4788999999999999999999987  69999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=7.1e-29  Score=253.16  Aligned_cols=267  Identities=15%  Similarity=0.149  Sum_probs=205.7

Q ss_pred             ccceeeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCC
Q 009614          229 GAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG  306 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg  306 (531)
                      ..+..|...+.+++|+|++ .+|++|+.||.|+||++.......     ...+.+|.+.|.+++|+| ++++|++++.|+
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3556777889999999999 999999999999999998544321     112347999999999999 789999999999


Q ss_pred             cEEEEEcccCccccceecCC---CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          307 TVRVWKVIEHERLDGFDVQD---TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      .|++||+.+ .....+....   ..+.++.+.++..                ..+.++.++.+.+|+..     .+++..
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~i~d~~-----~~~~~~  199 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ----------------MLATGDSTGRLLLLGLD-----GHEIFK  199 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT----------------EEEEEETTSEEEEEETT-----SCEEEE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC----------------EEEEECCCCCEEEEECC-----CCEEEE
Confidence            999999985 3333443322   3344555544321                23456778889999873     457888


Q ss_pred             eecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC----CeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI----DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~----~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      +.+|...|.+++|+|++  +|++++.|++|++||+++    +.++..+.|...|++++|+|.++.+|++++.|+.|+|||
T Consensus       200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence            99999999999999998  799999999999999998    778888899999999999997789999999999999999


Q ss_pred             CCCCeEE-EecC-------CC----------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCC
Q 009614          458 VRRCQVV-DYTD-------IR----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP  519 (531)
Q Consensus       458 ~~~~~~~-~~~~-------~~----------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~  519 (531)
                      +++++.. .+..       |.          ..+..++|+|+|++  +|+.||.|+|||+.+++++..+...      .+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~------~~  351 (383)
T 3ei3_B          280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP------NA  351 (383)
T ss_dssp             TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT------TB
T ss_pred             CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC------CC
Confidence            9886543 2221       22          23445666677666  7778999999999999987765421      12


Q ss_pred             CceeeeEEEee
Q 009614          520 GKRITGFQVVK  530 (531)
Q Consensus       520 ~~~It~l~f~p  530 (531)
                      ...+..++|+|
T Consensus       352 ~~~~~~~~~s~  362 (383)
T 3ei3_B          352 AGIISLNKFSP  362 (383)
T ss_dssp             CSCCCEEEECT
T ss_pred             CceEEEEEEec
Confidence            34566667775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.2e-28  Score=244.17  Aligned_cols=247  Identities=16%  Similarity=0.296  Sum_probs=199.1

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...+.+++|+|++.+|++|+.|+.|++|+......       ......+...+..+.+++++.+|++|+.|+.++
T Consensus        81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~  153 (340)
T 4aow_A           81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK  153 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce-------eeeecCCCCceeEEEEeecCccceeecCCCeEE
Confidence            4556778888999999999999999999999999885433       234667888999999999999999999999999


Q ss_pred             EEEcccCcccc-ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          310 VWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       310 iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      +||+....... ....+...+.++.+.......+              .+.++.++.+.+|+....    +.+..+.+|.
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~s~~~d~~i~i~d~~~~----~~~~~~~~h~  215 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI--------------IVSCGWDKLVKVWNLANC----KLKTNHIGHT  215 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE--------------EEEEETTSCEEEEETTTT----EEEEEECCCS
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcE--------------EEEEcCCCEEEEEECCCC----ceeeEecCCC
Confidence            99987654322 2233334444444444333222              234566778888887653    4567788999


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--  465 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--  465 (531)
                      +.|++++|+|++ +|++|+.|++|++||+++.+++..+.+...|.+++|+| ++. +++++.|+.|+|||++++..+.  
T Consensus       216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRY-WLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS-SSS-EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC-CCc-eeeccCCCEEEEEECCCCeEEEec
Confidence            999999999999 99999999999999999999999999999999999999 665 5566679999999999887653  


Q ss_pred             --------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          466 --------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       466 --------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                              ...|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                    23578899999999999999999999999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-29  Score=258.26  Aligned_cols=250  Identities=11%  Similarity=0.193  Sum_probs=203.4

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWK  312 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd  312 (531)
                      |...+.+++|+|++.+|++|+.||.|++|++......   ......+.+|...|++++|+|+ +++|++++.||.|++||
T Consensus        66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             cCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            4466778999999999999999999999999863211   1133467889999999999998 89999999999999999


Q ss_pred             cccCc------cccc---eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          313 VIEHE------RLDG---FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       313 ~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      +.+++      ....   ...+...+.++.+.+....               ..+.++.++.+.+|+....    +.+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~l~~~~~dg~v~iwd~~~~----~~~~~  203 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH---------------VFASAGSSNFASIWDLKAK----KEVIH  203 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT---------------EEEEESSSSCEEEEETTTT----EEEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCc---------------EEEEEcCCCCEEEEECCCC----CcceE
Confidence            98876      2222   2344555666666554222               2345567788899987653    33455


Q ss_pred             eecC------CCCeeEEEEcCCC--eEEEEeCCC---cEEEEECCCC-eEEEEee--cCCceEEEEEeeCCCCEEEEEeC
Q 009614          384 FQGH------SSEVLDLSWSKNG--FLLSSSADK---TVRLWQVGID-RCLRVFS--HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       384 ~~~h------~~~I~~l~~sp~~--~l~s~s~Dg---~V~lwdl~~~-~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                      +..|      ...|.+++|+|++  +|++++.|+   .|++||++++ .++..+.  |...|++++|+|.++++|++++.
T Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence            5555      7899999999997  899999998   9999999986 5666665  89999999999977899999999


Q ss_pred             CCeEEEEeCCCCeEE-EecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEE
Q 009614          450 DGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ||.|++||+.+++.+ .+..|...|++++|+|++ .+|++++.||.|+|||+.+++..
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            999999999998877 477889999999999999 89999999999999999887643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3e-28  Score=250.65  Aligned_cols=264  Identities=21%  Similarity=0.277  Sum_probs=214.2

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      .+.+.+...++++++..+++++.|+.|++|+...+...       ..+. .|...|++++|+|++++|++|+.||.|++|
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence            34444444455555677889999999999999865432       1233 388999999999999999999999999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      |+.+++.+..+..+...+.++.+..                  ...+.++.++.+.+|+....   ...+..+.+|.+.|
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~~~------------------~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v  220 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSWNR------------------HVLSSGSRSGAIHHHDVRIA---NHQIGTLQGHSSEV  220 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEET------------------TEEEEEETTSEEEEEETTSS---SCEEEEEECCSSCE
T ss_pred             ECcCCeEEEEecCCCCceEEEEECC------------------CEEEEEcCCCCEEEEecccC---cceeeEEcCCCCCe
Confidence            9999988887776666666655511                  13356677888999987642   34577888999999


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe--CCCeEEEEeCCCCeEEEec
Q 009614          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs--~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      .+++|+|++ +|++++.|+.|++||+++++++..+. |...|.+++|+|....++++|+  .|+.|++||+.+++.+...
T Consensus       221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~  300 (401)
T 4aez_A          221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV  300 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence            999999998 99999999999999999999888875 9999999999995556777765  7999999999999988777


Q ss_pred             CCCCceEEEEEccCCCEEEEE--eCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          468 DIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sg--s~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .+...|++++|+|++++|+++  +.||.|++||+.+++......+.      .+...|++++|+|
T Consensus       301 ~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~------~h~~~v~~~~~s~  359 (401)
T 4aez_A          301 DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP------AHDTRVLYSALSP  359 (401)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE------CCSSCCCEEEECT
T ss_pred             eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec------CCCCCEEEEEECC
Confidence            788899999999999999995  48999999999998776654432      3446889999886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=253.25  Aligned_cols=267  Identities=10%  Similarity=0.177  Sum_probs=214.0

Q ss_pred             ccccceeeeCCCC-eEEee----------ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          236 DRHGSATLKPGDH-ELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       236 ~~~~s~~fspdg~-~lasg----------s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      ..+.+++|+|++. ++++|          +.|+.|+||++.......    .. ....|...|++++|+|++++|++|+.
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~----~~-~~~~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK----PI-ASLQVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS----CS-CCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc----EE-EEEecCCceEEEEECCCCCeEEEEcc
Confidence            5677899999997 89999          889999999998654320    11 12358899999999999999999999


Q ss_pred             CCcEEEEEccc----CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc---
Q 009614          305 DGTVRVWKVIE----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---  377 (531)
Q Consensus       305 Dg~I~iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  377 (531)
                      ||.|++|++.+    .+....+..+...+.++.+.+.....               .+.++.++.+.+|+.......   
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---------------l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNV---------------LASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTB---------------EEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCE---------------EEEEcCCCeEEEEECCCCcccccc
Confidence            99999999987    34566666677777777776653222               245566788888887654310   


Q ss_pred             --CcceeEeecCCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEee-c------CCceEEEEEeeCCCCEEEE
Q 009614          378 --EKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-H------NNYVTSVAFNPVDDNYFIS  446 (531)
Q Consensus       378 --~~~~~~~~~h~~~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h------~~~V~sv~fsp~d~~~l~s  446 (531)
                        ...+..+.+|...|.+++|+|+ + +|++++.|+.|++||+++++++..+. +      ...|++++|+|....+|++
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence              1112334679999999999998 4 99999999999999999999988886 3      7889999999933479999


Q ss_pred             EeCCC---eEEEEeCCCC-eEE-Eec-CCCCceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCC
Q 009614          447 GSIDG---KVRIWEVRRC-QVV-DYT-DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP  519 (531)
Q Consensus       447 gs~Dg---~I~Iwd~~~~-~~~-~~~-~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~  519 (531)
                      ++.|+   .|++||++++ .++ .+. .|...|++++|+| ++++|++++.||.|++||+.+++++..+.        .+
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--------~~  304 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--------AR  304 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--------CS
T ss_pred             EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--------CC
Confidence            99999   9999999986 444 355 7899999999999 99999999999999999999998876654        23


Q ss_pred             CceeeeEEEee
Q 009614          520 GKRITGFQVVK  530 (531)
Q Consensus       520 ~~~It~l~f~p  530 (531)
                      ...|++++|+|
T Consensus       305 ~~~v~~~~~s~  315 (416)
T 2pm9_A          305 GNWCFKTKFAP  315 (416)
T ss_dssp             SSCCCCEEECT
T ss_pred             CCceEEEEECC
Confidence            46788888886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=1.3e-28  Score=271.64  Aligned_cols=244  Identities=19%  Similarity=0.320  Sum_probs=197.1

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...+.+++|+|++++|++|+.||.|+|||+....       ..+.+.+|...|++++|+|++++|++|+.|++|+
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK  497 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            456677888899999999999999999999999997543       3346889999999999999999999999999999


Q ss_pred             EEEcccCccccce---ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec
Q 009614          310 VWKVIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG  386 (531)
Q Consensus       310 iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (531)
                      +||+.........   ..+...+.++.+.++...              ...++++.++.+.+|+....    +....+.+
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--------------~~l~s~s~d~~v~vwd~~~~----~~~~~~~~  559 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ--------------PTIVSASWDKTVKVWNLSNC----KLRSTLAG  559 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS--------------CEEEEEETTSCEEEEETTTC----CEEEEECC
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc--------------ceEEEEeCCCeEEEEECCCC----cEEEEEcC
Confidence            9998654322111   223334555555544321              12356778889999987653    44677889


Q ss_pred             CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      |.+.|++++|+|++ +|++|+.|++|++||+.+++++..+.+...|.+++|+| ++.++++++ ++.|+|||+.+++++.
T Consensus       560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSIVE  637 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCChh
Confidence            99999999999999 99999999999999999999999988888999999999 888777765 5679999999988764


Q ss_pred             -ecCC-------------------CCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          466 -YTDI-------------------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       466 -~~~~-------------------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                       +..+                   ...+++++|+|||++|++|+.||.|+||++.
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence             2111                   1137899999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.9e-28  Score=274.44  Aligned_cols=268  Identities=18%  Similarity=0.223  Sum_probs=226.7

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      ..+..|.+.+.+++|+|+++++|+|+.+|.|+||++..+.       ..+.+.+|.++|++++|+|++++|++|+.||.|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            3567788999999999999999999999999999987543       334678999999999999999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+.+++.+..+..+...+.++.|.++...                .+.++.++.+.+|+....   ......+.+|.
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----------------l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~  140 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY----------------VLSGSDDLTVKLWNWENN---WALEQTFEGHE  140 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSE----------------EEEEETTSEEEEEEGGGT---SEEEEEEECCS
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCE----------------EEEEcCCCEEEEEECCCC---ceEEEEEcCCC
Confidence            99999999988888877777777777665432                234566788888876542   23466788999


Q ss_pred             CCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       389 ~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      ..|.+++|+| ++ .|++++.|++|++||+.++.....+.  +...+.+++|+|. ++.+|++++.||.|++||+.+++.
T Consensus       141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (814)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred             CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            9999999999 66 99999999999999999888777664  4588999999983 578999999999999999999987


Q ss_pred             EE-ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          464 VD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       464 ~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +. +..|...|++++|+|++++|++++.||.|++||+.+++.+..+..        +...|+.++|+|
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~  280 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--------GLERSWCIATHP  280 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--------SSSSEEEEEECT
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--------CCCcEEEEEEcc
Confidence            74 677899999999999999999999999999999999888775542        235677777765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.2e-28  Score=248.91  Aligned_cols=260  Identities=18%  Similarity=0.216  Sum_probs=200.3

Q ss_pred             cceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCccccccccc------ceEEcccCCCEEEEEEcc-CCCEEEE
Q 009614          230 AMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYT------GQEFLAHEGSILTMKFSL-DGQYLAS  301 (531)
Q Consensus       230 ~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~------~~~l~~H~~~I~~l~fsp-dg~~Las  301 (531)
                      .+..|.+.+.+++|+| ++++|++|+.||.|++|++............      .....+|...|.+++|+| ++++|++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  117 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS  117 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence            3556788899999999 9999999999999999999866543221000      001136999999999999 7889999


Q ss_pred             EeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      ++.||.|++||+.+++....+.. ...+.++.+.+...             .....+.++.++.+.+|+...    .+.+
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~d~~~----~~~~  179 (408)
T 4a11_B          118 SSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVST-------------KHCLVAVGTRGPKVQLCDLKS----GSCS  179 (408)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCS-------------SCCEEEEEESSSSEEEEESSS----SCCC
T ss_pred             EeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCC-------------CCcEEEEEcCCCeEEEEeCCC----ccee
Confidence            99999999999999887666652 33333444433221             112335566778888888765    3456


Q ss_pred             eEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe-EEEEe----------------ecCCceEEEEEeeCCCC
Q 009614          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-CLRVF----------------SHNNYVTSVAFNPVDDN  442 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~-~l~~~----------------~h~~~V~sv~fsp~d~~  442 (531)
                      ..+.+|...|.+++|+|++  +|++++.|+.|++||++++. ++..+                .|...|++++|+| +++
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  258 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGL  258 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSS
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCC
Confidence            7888999999999999998  58999999999999998765 33433                3888999999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCCe-----------------------------------------------EE-EecCCCCceE
Q 009614          443 YFISGSIDGKVRIWEVRRCQ-----------------------------------------------VV-DYTDIREIVS  474 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~-----------------------------------------------~~-~~~~~~~~v~  474 (531)
                      +|++++.||.|++||+.+++                                               .+ .+.+|...|+
T Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~  338 (408)
T 4a11_B          259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD  338 (408)
T ss_dssp             EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence            99999999999999987643                                               22 3466889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      +++|+|++++|++|+.||.|++||+.+++.+...
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence            9999999999999999999999999998877544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=6.7e-29  Score=258.02  Aligned_cols=267  Identities=14%  Similarity=0.230  Sum_probs=190.8

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcc----cccccccceEEcccC------------CCEEEEEEccCC-
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHE------------GSILTMKFSLDG-  296 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~----~~~~~~~~~~l~~H~------------~~I~~l~fspdg-  296 (531)
                      +.+.|.+++|+|+|.+||+|+.||.|+||++.....    ..........+.+|.            +.|++++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            346788899999999999999999999999986542    111222345788998            889999999998 


Q ss_pred             -CEEEEEeCCCcEEEEEcccCccccceecCCC--------------CCe-------------eEEEeecCCcceeeeecc
Q 009614          297 -QYLASGGEDGTVRVWKVIEHERLDGFDVQDT--------------DPS-------------CLYFTINHLSQLIPIDVD  348 (531)
Q Consensus       297 -~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~--------------~~~-------------~~~~~~~~~~~~~~~~~~  348 (531)
                       .+|++++.||+|++|++.++...........              ...             ...+...+...+..+.+.
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             7999999999999999987543211000000              000             001112233333333333


Q ss_pred             ccccccccccccCCCceEEEeCCccccccCc----ceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE-
Q 009614          349 KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK----PLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-  421 (531)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~-  421 (531)
                      ..   ....+.+ .++.+.+|+.........    ....+.+|...|.+++|+|++  +|++|+.|++|++||+++++. 
T Consensus       187 ~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          187 SD---YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             TT---SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             CC---CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            21   1122344 688999998863211100    011366899999999999986  899999999999999999886 


Q ss_pred             ---EEEee-cCC------------ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC-CeEEE-ecCCCCc-----------
Q 009614          422 ---LRVFS-HNN------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVD-YTDIREI-----------  472 (531)
Q Consensus       422 ---l~~~~-h~~------------~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~-~~~~~-~~~~~~~-----------  472 (531)
                         +..+. |..            .|++++|+| ++++|++++. +.|+|||+++ ++++. +..|...           
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence               66665 444            899999999 9999999999 9999999997 66553 4444321           


Q ss_pred             ----eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          473 ----VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       473 ----v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                          +..++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence                3349999999999999999999999999988763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=6e-28  Score=240.30  Aligned_cols=240  Identities=17%  Similarity=0.229  Sum_probs=203.6

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      +...+.+++|+|+++++++|+.+|.|++|++......     ....+.+|...|++++|+|++++|++++.||.|++||+
T Consensus        96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            4456778999999999999999999999999865421     23457789999999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++....+..+...+.++.+.++..                ..+.++.++.+.+|+.....    .+..+ .|...+.+
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~l~~~~~dg~i~~~d~~~~~----~~~~~-~~~~~v~~  229 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGT----------------KLWTGGLDNTVRSWDLREGR----QLQQH-DFTSQIFS  229 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTE----EEEEE-ECSSCEEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCC----------------EEEEEecCCcEEEEECCCCc----eEeee-cCCCceEE
Confidence            99988877777666666666655432                22345567788888876543    23333 47889999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~  472 (531)
                      ++|+|++ +|++++.|+.|++||+.+++......|...|++++|+| ++++|++++.||.|++||+.+++.+....|...
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  308 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEecCCCc
Confidence            9999999 99999999999999999998877777999999999999 999999999999999999999998877788999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      |++++|+|++++|++++.||.|++|++.
T Consensus       309 v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          309 VLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999999999999999999999999963

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.9e-28  Score=246.17  Aligned_cols=281  Identities=13%  Similarity=0.163  Sum_probs=212.1

Q ss_pred             ceeeeccccceeeeCCCCeE-Eeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC---CCEEEEEe
Q 009614          231 MARIIDRHGSATLKPGDHEL-TLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGG  303 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~l-asgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs  303 (531)
                      ...|...+.+++|+|++..+ ++|+.   ||.|+||++.......      ....+|...|++++|+|+   +++|++|+
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~   87 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGD   87 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEec
Confidence            34577788899999999655 56665   9999999998654321      123379999999999998   69999999


Q ss_pred             CCCcEEEEEcccCc-cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          304 EDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      .||.|++||+.+++ ....+..+...+.++.+.+.-     +  +.   ......+.++.++.+.+|+.....   .++.
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~--~s---~~~~~l~~~~~d~~i~vwd~~~~~---~~~~  154 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-----G--IG---EGAPEIVTGSRDGTVKVWDPRQKD---DPVA  154 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-----G--CC----CCCEEEEEETTSCEEEECTTSCS---SCSE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-----c--cC---CCccEEEEEeCCCeEEEEeCCCCC---Ccce
Confidence            99999999999887 667777676666666554210     0  00   011233566778889999887543   2455


Q ss_pred             EeecCCC----CeeEEE----EcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeC--CCCEEEEEeCCC
Q 009614          383 EFQGHSS----EVLDLS----WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDG  451 (531)
Q Consensus       383 ~~~~h~~----~I~~l~----~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~--d~~~l~sgs~Dg  451 (531)
                      .+..|.+    .|.+++    |+|++ +|++++.|+.|++||+++++......|...|++++|+|.  ++.+|++++.||
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            6655554    899998    67888 999999999999999999999888889999999999995  678999999999


Q ss_pred             eEEEEeCCCCeEE------EecCCCCceEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEee-----------eeec
Q 009614          452 KVRIWEVRRCQVV------DYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQ-----------ICLQ  513 (531)
Q Consensus       452 ~I~Iwd~~~~~~~------~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~~~~l~~~~~-----------~~~~  513 (531)
                      .|++||+++++..      ....|...|++++|+|+++ +|++|+.||.|++||+..+.......           ....
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~  314 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL  314 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence            9999999876533      2348999999999999998 89999999999999998754332100           0001


Q ss_pred             ccccCCCceeeeEEEee
Q 009614          514 GKKKLPGKRITGFQVVK  530 (531)
Q Consensus       514 ~~kk~~~~~It~l~f~p  530 (531)
                      .....+...|++++|+|
T Consensus       315 ~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          315 QNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             EEEECCSSCEEEEEECS
T ss_pred             eccccCCCCeeEEEEcC
Confidence            11234567899999987

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-28  Score=250.25  Aligned_cols=266  Identities=15%  Similarity=0.275  Sum_probs=208.1

Q ss_pred             eeccccceeeeCCCC-eEEeeecCCeEEEEeC----CCCcc-----cccc----cccceEEcccCCCEEEEEEccCCCEE
Q 009614          234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPV----KKQSR-----ELSS----LYTGQEFLAHEGSILTMKFSLDGQYL  299 (531)
Q Consensus       234 ~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~----~~~~~-----~~~~----~~~~~~l~~H~~~I~~l~fspdg~~L  299 (531)
                      |.+.+.+++|+|++. +||+|+.||.|++|++    .....     ....    +.......+|.+.|++++|+|++++|
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            347888999999999 9999999999999999    65442     0000    00001122378899999999999999


Q ss_pred             EEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       300 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      ++|+.||.|++|+ .+++....+..+...+.++.+.++..                ..+.++.++.+.+|+....    +
T Consensus       124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~----~  182 (425)
T 1r5m_A          124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT----------------HIISMDVENVTILWNVISG----T  182 (425)
T ss_dssp             EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS----------------EEEEEETTCCEEEEETTTT----E
T ss_pred             EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC----------------EEEEEecCCeEEEEECCCC----c
Confidence            9999999999999 56777777777777777776655432                1234456777888887553    3


Q ss_pred             ceeEeecCCCC---------------eeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCE
Q 009614          380 PLHEFQGHSSE---------------VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       380 ~~~~~~~h~~~---------------I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~  443 (531)
                      .+..+..|...               +.+++|+|++.+++++.|+.|++||+.+++.+..+. |...|++++|+| ++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  261 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKL  261 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTE
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCE
Confidence            45556666665               999999999999999999999999999998888775 899999999999 9999


Q ss_pred             EEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCce
Q 009614          444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR  522 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~  522 (531)
                      |++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ +|++++.||.|++||+.+++++..+.        .+...
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~  332 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--------VDGVP  332 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--------CTTCC
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--------cCCcc
Confidence            999999999999999987765 466789999999999999 99999999999999999998776544        23467


Q ss_pred             eeeEEEee
Q 009614          523 ITGFQVVK  530 (531)
Q Consensus       523 It~l~f~p  530 (531)
                      |++++|+|
T Consensus       333 i~~~~~s~  340 (425)
T 1r5m_A          333 IFAGRISQ  340 (425)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEcC
Confidence            88888876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=2.9e-28  Score=249.11  Aligned_cols=250  Identities=14%  Similarity=0.189  Sum_probs=202.0

Q ss_pred             cceeeeccccceeeeCC----C---CeEEeeecCCeEEEEeCCCCcccccccccceEEccc-----CCCEEEEEEc----
Q 009614          230 AMARIIDRHGSATLKPG----D---HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-----EGSILTMKFS----  293 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspd----g---~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-----~~~I~~l~fs----  293 (531)
                      .+..|...+.+++|+|+    +   .+|++|+.||.|++|++......  .......+.+|     ...|++++|+    
T Consensus        57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccC
Confidence            34456677888999999    9   99999999999999998865431  11113457778     5999999999    


Q ss_pred             cCCCE-EEEEeCCCcEEEEEccc------Ccccc-----cee-------cCCCCCeeEEEeecCCcceeeeecccccccc
Q 009614          294 LDGQY-LASGGEDGTVRVWKVIE------HERLD-----GFD-------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDK  354 (531)
Q Consensus       294 pdg~~-Lasgs~Dg~I~iWd~~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (531)
                      |++++ |++++.||.|++||+.+      ++.+.     .+.       .+...+.++.+.+..                
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------  198 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----------------  198 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----------------
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc----------------
Confidence            99999 99999999999999988      66555     442       244445555554433                


Q ss_pred             ccccccCCCceEEEeCCccccccCcceeEeec---C---CCCeeEEEEcCCC-eEEEEeCC---CcEEEEECCCCeEEEE
Q 009614          355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG---H---SSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRV  424 (531)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~I~~l~~sp~~-~l~s~s~D---g~V~lwdl~~~~~l~~  424 (531)
                       ..+.++.++.+.+|+...    .+++..+..   |   ...|.+++|+|++ +|++++.|   +.|++||+++++++..
T Consensus       199 -~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~  273 (397)
T 1sq9_A          199 -LIATGFNNGTVQISELST----LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS  273 (397)
T ss_dssp             -EEEEECTTSEEEEEETTT----TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             -eEEEEeCCCcEEEEECCC----CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence             234566778899998865    345677788   8   9999999999999 99999999   9999999999998888


Q ss_pred             ee--------------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec------CC--------------
Q 009614          425 FS--------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT------DI--------------  469 (531)
Q Consensus       425 ~~--------------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~------~~--------------  469 (531)
                      +.              |...|++++|+| ++++|++++.||.|+|||+.+++.+. +.      .|              
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  352 (397)
T 1sq9_A          274 LSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL  352 (397)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             eccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccc
Confidence            85              889999999999 99999999999999999999998774 55      56              


Q ss_pred             -CCceEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCe
Q 009614          470 -REIVSAVCYCPDG----------KGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       470 -~~~v~~v~~spdg----------~~l~sgs~dg~I~iwd~~~~~  503 (531)
                       ...|++++|+|+|          ++|++++.||.|++|++.+++
T Consensus       353 ~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          353 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence             8999999999998          799999999999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=1.9e-28  Score=252.64  Aligned_cols=262  Identities=15%  Similarity=0.149  Sum_probs=202.9

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~  319 (531)
                      ...|+|++.+|++|+.||.|++|++....       ..+.+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+
T Consensus       102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A          102 VDTAKLQMRRFILGTTEGDIKVLDSNFNL-------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP  174 (420)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEECTTSCE-------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred             EEEEecCCCEEEEEECCCCEEEEeCCCcc-------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence            35789999999999999999999987433       22345789999999999999999999999999999999999988


Q ss_pred             cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec-------------
Q 009614          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-------------  386 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  386 (531)
                      ..+..+...+.++.+.++..                ..+.++.++.+.+|+.....    .+..+..             
T Consensus       175 ~~~~~h~~~v~~~~~~~~~~----------------~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          175 RTLIGHRATVTDIAIIDRGR----------------NVLSASLDGTIRLWECGTGT----TIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEEECCSSCEEEEEEETTTT----------------EEEEEETTSCEEEEETTTTE----EEEEECBTTBTTCCEEEEEE
T ss_pred             eEEcCCCCcEEEEEEcCCCC----------------EEEEEcCCCcEEEeECCCCc----eeEEeecCCCCCCCccEEEE
Confidence            88887877777777766432                22345667778888765432    2333332             


Q ss_pred             -----------CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCC-EEEEEeCCC
Q 009614          387 -----------HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDG  451 (531)
Q Consensus       387 -----------h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~-~l~sgs~Dg  451 (531)
                                 |...+.+++|+|++ +|++++.|+.|++||+++++.+..+.  |...|++++|+| ++. +|++|+.||
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg  313 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG-NNANYIYAGYENG  313 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS-SCTTEEEEEETTS
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC-CCCCEEEEEeCCC
Confidence                       34566667778999 99999999999999999998887774  788999999999 777 999999999


Q ss_pred             eEEEEeCCCCeE--EEecC-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-eeecccccCCCceeeeEE
Q 009614          452 KVRIWEVRRCQV--VDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ-ICLQGKKKLPGKRITGFQ  527 (531)
Q Consensus       452 ~I~Iwd~~~~~~--~~~~~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~-~~~~~~kk~~~~~It~l~  527 (531)
                      .|++||+++++.  ..+.. +...|+++. .|++++|++++.||.|++|++.......... .........+...|+.++
T Consensus       314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  392 (420)
T 3vl1_A          314 MLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC  392 (420)
T ss_dssp             EEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred             eEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence            999999998643  34444 666777774 5688899999999999999998743221111 011111234567889999


Q ss_pred             Eee
Q 009614          528 VVK  530 (531)
Q Consensus       528 f~p  530 (531)
                      |+|
T Consensus       393 ~s~  395 (420)
T 3vl1_A          393 YVS  395 (420)
T ss_dssp             EEC
T ss_pred             Ecc
Confidence            987

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=2.1e-28  Score=252.37  Aligned_cols=258  Identities=16%  Similarity=0.158  Sum_probs=205.9

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      +...+++|+|+++++++|+.|+.|++|+........       .+..| ..+....|++++++|++|+.||.|++||+.+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee-------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence            334568999999999999999999999988654321       23344 4455557899999999999999999999998


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ++....+..+...+.++.|.++..                ..+.++.++.+.+|+...    .+.+..+.+|...|.+++
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~s~s~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGE----------------ALISSSQDMQLKIWSVKD----GSNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTT----CCCCEEEECCSSCEEEEE
T ss_pred             cceeeecccccCccEEEEECCCCC----------------EEEEEeCCCeEEEEeCCC----CcCceEEcCCCCcEEEEE
Confidence            887777677777777777765432                234566788899998765    345678899999999999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEE---------------------eeCCCCEEEEEeC
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAF---------------------NPVDDNYFISGSI  449 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~f---------------------sp~d~~~l~sgs~  449 (531)
                      |+|++ +|++++.|++|++||+++++++..+.    +...|.+++|                     +| ++++|++|+.
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  267 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHV  267 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEET
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcC
Confidence            99999 99999999999999999999998885    4555666555                     67 7889999999


Q ss_pred             CCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeE-EEEeeeeecccccCCCceeee
Q 009614          450 DGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITG  525 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~~~~l-~~~~~~~~~~~kk~~~~~It~  525 (531)
                      ||.|++||+++++.+.  ...|...|++++|+|++. +|++|+.||.|++||+.+++. +..+..       .+...|+.
T Consensus       268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~v~~  340 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------NEGTPINN  340 (420)
T ss_dssp             TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-------STTSCEEE
T ss_pred             CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-------cCCCCceE
Confidence            9999999999987663  345778999999999999 999999999999999998753 433332       12356666


Q ss_pred             EEEe
Q 009614          526 FQVV  529 (531)
Q Consensus       526 l~f~  529 (531)
                      +.|.
T Consensus       341 ~~~~  344 (420)
T 3vl1_A          341 VYFA  344 (420)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            6553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.5e-28  Score=250.20  Aligned_cols=244  Identities=16%  Similarity=0.254  Sum_probs=199.6

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      ...+.+++|+|++.+|++|+.||.|++|++....       ....+.+|...|.+++|  ++++|++|+.||.|++||+.
T Consensus       134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            4567789999999999999999999999997543       33467899999999999  46799999999999999998


Q ss_pred             c-CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          315 E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      . ......+..+...+.++.+.++.                ...+.++.++.+.+|+...    .+++..+.+|...|.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDG----------------LQLASGGNDNVVQIWDARS----SIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTC----SSEEEEECCCSSCCCE
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCC----------------CEEEEEeCCCeEEEccCCC----CCccEEecCCcceEEE
Confidence            4 44555666666666666665532                1234566778899998775    4557778899999999


Q ss_pred             EEEcCCC--eEEEEe--CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE--eCCCeEEEEeCCCCeEE---
Q 009614          394 LSWSKNG--FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVV---  464 (531)
Q Consensus       394 l~~sp~~--~l~s~s--~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg--s~Dg~I~Iwd~~~~~~~---  464 (531)
                      ++|+|++  ++++++  .|+.|++||+.+++++..+.+...|++++|+| ++.+|+++  +.||.|+|||+.+++..   
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence            9999977  666665  79999999999999999999999999999999 89999984  48999999999997654   


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      .+.+|...|++++|+|+|++|++++.||.|++|++.+++.+...
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            36789999999999999999999999999999999998877643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=7.3e-28  Score=247.65  Aligned_cols=233  Identities=15%  Similarity=0.228  Sum_probs=191.7

Q ss_pred             ccceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCC
Q 009614          229 GAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDG  306 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg  306 (531)
                      ..+.+|...+.+++|+| ++.+|++|+.||.|+||++...............+.+|...|++++|+|++ ++|++|+.||
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            34566788899999999 999999999999999999987643222223455788999999999999998 6999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe--
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--  384 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  384 (531)
                      .|++||+.+++.                                                              +..+  
T Consensus       155 ~i~iwd~~~~~~--------------------------------------------------------------~~~~~~  172 (402)
T 2aq5_A          155 VILVWDVGTGAA--------------------------------------------------------------VLTLGP  172 (402)
T ss_dssp             CEEEEETTTTEE--------------------------------------------------------------EEEECT
T ss_pred             EEEEEECCCCCc--------------------------------------------------------------cEEEec
Confidence            999999977653                                                              2333  


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCc-eEEEEEeeCCCCEEEEE---eCCCeEEEEe
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNY-VTSVAFNPVDDNYFISG---SIDGKVRIWE  457 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~-V~sv~fsp~d~~~l~sg---s~Dg~I~Iwd  457 (531)
                      .+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+  .|... +.+++|+| ++.+|++|   +.|+.|++||
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEc
Confidence            5688999999999999 9999999999999999999999887  36655 89999999 89999999   7999999999


Q ss_pred             CCCCeE---EEecCCCCceEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeE-EEEeeeeecccccCCCceeeeEEEee
Q 009614          458 VRRCQV---VDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       458 ~~~~~~---~~~~~~~~~v~~v~~spdg~~l~s-gs~dg~I~iwd~~~~~l-~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +++.+.   .....+...+.+++|+|++++|++ |+.||.|++||+.+++. +..+...      .+...|++++|+|
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~------~~~~~v~~~~~sp  323 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF------SSKESQRGMGYMP  323 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE------CCSSCCSEEEECC
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc------ccCCcccceEEec
Confidence            998653   234467788999999999999965 55799999999998874 3333211      1346889999886

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-27  Score=234.68  Aligned_cols=247  Identities=20%  Similarity=0.270  Sum_probs=202.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +..|...+.+++|+|++.++++|+.||.|++|++.....    ......+.+|...|.+++|  ++++|++++.||.|++
T Consensus        55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~  128 (313)
T 3odt_A           55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG----EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKV  128 (313)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT----SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC----CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEE
Confidence            344566788899999999999999999999999986432    2233467899999999999  5779999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec-CCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSS  389 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~  389 (531)
                      ||  .+.....+..+...+.++.+.+.....               .+.++.++.+.+|+.      .+....+.. |..
T Consensus       129 ~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------l~~~~~d~~i~i~d~------~~~~~~~~~~~~~  185 (313)
T 3odt_A          129 WK--EGSLVYNLQAHNASVWDAKVVSFSENK---------------FLTASADKTIKLWQN------DKVIKTFSGIHND  185 (313)
T ss_dssp             EE--TTEEEEEEECCSSCEEEEEEEETTTTE---------------EEEEETTSCEEEEET------TEEEEEECSSCSS
T ss_pred             Ec--CCcEEEecccCCCceeEEEEccCCCCE---------------EEEEECCCCEEEEec------CceEEEEeccCcc
Confidence            99  566666666666666666666533222               244566777888872      345666676 999


Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-Eec
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT  467 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~  467 (531)
                      .|.+++|+|++.+++++.|+.|++||+++++++..+. |...|++++|+| ++ .|++++.||.|++||+.+++.+ .+.
T Consensus       186 ~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          186 VVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             CEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred             cEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEe
Confidence            9999999999999999999999999999999998886 999999999999 77 6899999999999999999877 467


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .|...|++++|+|+++ +++++.||.|++||+.++++.....
T Consensus       264 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          264 LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            7888999999999998 6679999999999999888765544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-27  Score=239.99  Aligned_cols=264  Identities=12%  Similarity=0.123  Sum_probs=210.2

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC-----
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----  305 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----  305 (531)
                      +..|...+.+++|+|++++|++++.||.|++|++.....       ...+. |...|.+++|+|++++|++++.+     
T Consensus        70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~  141 (369)
T 3zwl_B           70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-------VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNP  141 (369)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred             hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-------EEEee-cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence            345667788899999999999999999999999985442       22344 88899999999999999999999     


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      |.|++||+........+...................+..+.+...   ....+.++.++.+.+|+....   ...+..+.
T Consensus       142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~  215 (369)
T 3zwl_B          142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK---GKYIIAGHKDGKISKYDVSNN---YEYVDSID  215 (369)
T ss_dssp             CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG---GCEEEEEETTSEEEEEETTTT---TEEEEEEE
T ss_pred             CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC---CCEEEEEcCCCEEEEEECCCC---cEeEEEEe
Confidence            999999998876554443332222111111111112333322221   123355677888999987652   24577888


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC-------------
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-------------  451 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg-------------  451 (531)
                      .|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| ++.++++++.++             
T Consensus       216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~  294 (369)
T 3zwl_B          216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGK  294 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECCC-------------
T ss_pred             cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCc
Confidence            899999999999999 99999999999999999999999999999999999999 999999999988             


Q ss_pred             -eEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          452 -KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       452 -~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                       .|++||+.+++.+ .+..|...|++++|+|++++|++++.||.|+||++..+.+..++.
T Consensus       295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  354 (369)
T 3zwl_B          295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD  354 (369)
T ss_dssp             CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred             ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence             8999999998877 478899999999999999999999999999999998876655443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.2e-28  Score=248.37  Aligned_cols=273  Identities=16%  Similarity=0.198  Sum_probs=212.4

Q ss_pred             eeeeccccceeeeCC----CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC----CCEEEEEe
Q 009614          232 ARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGG  303 (531)
Q Consensus       232 ~~~~~~~~s~~fspd----g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs  303 (531)
                      .+|...+.+++|+|+    ...+++++.++.|++|++....... . ........|...|++++|+|+    +++|++|+
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR-L-LQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE-E-EEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE-e-eeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            356778889999994    5567777778899999998543211 0 011111237788999999998    67999999


Q ss_pred             CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      .||.|++||+.+++.+..+..+...+.++.+.+....               ..+.++.++.+.+|+....    +.+..
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~l~s~~~dg~i~iwd~~~~----~~~~~  153 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN---------------LLLSVSKDHALRLWNIQTD----TLVAI  153 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT---------------EEEEEETTSCEEEEETTTT----EEEEE
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC---------------EEEEEeCCCeEEEEEeecC----eEEEE
Confidence            9999999999999988888877777888777663222               2244566788999987653    34555


Q ss_pred             e---ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-----------------------------cCCc
Q 009614          384 F---QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------------------------HNNY  430 (531)
Q Consensus       384 ~---~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-----------------------------h~~~  430 (531)
                      +   .+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.                             |...
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence            5   6899999999999999 99999999999999999876543332                             8899


Q ss_pred             eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE--------------E-EecCCCCceEEEEEccC--CCEEEEEeCCCc
Q 009614          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--------------V-DYTDIREIVSAVCYCPD--GKGGIVGTMTGN  493 (531)
Q Consensus       431 V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~--------------~-~~~~~~~~v~~v~~spd--g~~l~sgs~dg~  493 (531)
                      |++++|+   +++|++++.|+.|++||+.+...              + .+..|...|++++|+|+  +++|++|+.||.
T Consensus       234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  310 (366)
T 3k26_A          234 VDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK  310 (366)
T ss_dssp             CCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred             EEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence            9999998   57999999999999999987532              3 57778889999999999  999999999999


Q ss_pred             EEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          494 CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       494 I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |++||+.+++........+.++  .+...|++++|+|
T Consensus       311 i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~  345 (366)
T 3k26_A          311 LYVWDLEVEDPHKAKCTTLTHH--KCGAAIRQTSFSR  345 (366)
T ss_dssp             EEEEECCSSSGGGCEEEEECCT--TCCSCEEEEEECT
T ss_pred             EEEEECCCCCCccccceEEccc--ccCCceEEEEeCC
Confidence            9999999987554322222222  1257899999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.7e-28  Score=247.12  Aligned_cols=241  Identities=15%  Similarity=0.192  Sum_probs=193.0

Q ss_pred             ccccceeeeCC----CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 009614          236 DRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV  310 (531)
Q Consensus       236 ~~~~s~~fspd----g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~i  310 (531)
                      ..+.+++|+|+    +.+|++|+.||.|++|++....       ....+.+|...|++++|+| ++++|++|+.||.|++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i  142 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL  142 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            55778999999    6799999999999999988543       3346789999999999999 9999999999999999


Q ss_pred             EEcccCccccce---ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc----------
Q 009614          311 WKVIEHERLDGF---DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL----------  377 (531)
Q Consensus       311 Wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  377 (531)
                      ||+.+++....+   ..+...+.++.+.++..                ..+.++.++.+.+|+.......          
T Consensus       143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  206 (366)
T 3k26_A          143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE----------------KIMSCGMDHSLKLWRINSKRMMNAIKESYDYN  206 (366)
T ss_dssp             EETTTTEEEEEECSTTSCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred             EEeecCeEEEEecccccccCceeEEEECCCCC----------------EEEEecCCCCEEEEECCCCccccccceeEEec
Confidence            999998877776   45555666666655332                2244556677888876543221          


Q ss_pred             --------------CcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE--------------EEEee-cC
Q 009614          378 --------------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC--------------LRVFS-HN  428 (531)
Q Consensus       378 --------------~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~--------------l~~~~-h~  428 (531)
                                    ........+|...|.+++|+ ..+|++++.|+.|++||+.++..              +..+. |.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          207 PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             GGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             CCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                          01233445599999999999 33999999999999999987643              55554 88


Q ss_pred             CceEEEEEeeCC--CCEEEEEeCCCeEEEEeCCCCe-----EEEecCC--CCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          429 NYVTSVAFNPVD--DNYFISGSIDGKVRIWEVRRCQ-----VVDYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       429 ~~V~sv~fsp~d--~~~l~sgs~Dg~I~Iwd~~~~~-----~~~~~~~--~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      ..|++++|+| +  +++|++|+.||.|++||+.+++     ...+..|  ...|++++|+|++++|++++.||.|+|||+
T Consensus       286 ~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          286 CDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             CCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            8999999999 8  9999999999999999999864     2246666  789999999999999999999999999998


Q ss_pred             CC
Q 009614          500 KD  501 (531)
Q Consensus       500 ~~  501 (531)
                      .+
T Consensus       365 ~~  366 (366)
T 3k26_A          365 LR  366 (366)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=4.4e-27  Score=254.14  Aligned_cols=255  Identities=18%  Similarity=0.226  Sum_probs=209.7

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCC-EEEEEEcc--CCCEEEEEeCCCcEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSL--DGQYLASGGEDGTVR  309 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~I~  309 (531)
                      .+...+.+++|+|+++++++++ ++.|+||++.+....   ......+.+|.+. |++++|+|  ++++|++|+.||.|+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            3457788899999999999998 899999999854211   1234568899999 99999999  999999999999999


Q ss_pred             EEEcccC--------ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          310 VWKVIEH--------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       310 iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      +||+.++        .....+..+...+.++.+.++....+.. ..+           ....+.+.+|+.      .+.+
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~-----------~~~~~~v~~~d~------~~~~  153 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV-GEG-----------RDNFGVFISWDS------GNSL  153 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE-ECC-----------SSCSEEEEETTT------CCEE
T ss_pred             EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe-ccC-----------CCCccEEEEEEC------CCcc
Confidence            9999755        5555666666666677666554322211 100           011256777773      3467


Q ss_pred             eEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCC---ceEEEEEeeCC-CCEEEEEeCCCeEE
Q 009614          382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVD-DNYFISGSIDGKVR  454 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~---~V~sv~fsp~d-~~~l~sgs~Dg~I~  454 (531)
                      ..+.+|...|.+++|+|++  .|++++.|+.|++||+.+++++..+. |..   .|++++|+| + +++|++++.||.|+
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS  232 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence            7888999999999999998  79999999999999999999998886 888   899999999 7 99999999999999


Q ss_pred             EEeCCCCeEEEec-----CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          455 IWEVRRCQVVDYT-----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       455 Iwd~~~~~~~~~~-----~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +||+.+++.+...     .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+...
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            9999999888644     899999999999 9999999999999999999999988776643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=273.57  Aligned_cols=252  Identities=18%  Similarity=0.246  Sum_probs=204.6

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC--CCEEEEEeCCCc
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGT  307 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~  307 (531)
                      .+.+|.+.+.+++|+|+++++++|+.||.|+||++....     ......+.+|.++|++++|+|+  +++|++|+.||+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            456788899999999999999999999999999987432     2233568899999999999988  999999999999


Q ss_pred             EEEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      |++||+.+++  ....+..+...+.++.+.+....              ...+.++.++.+.+|+......  .....+.
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--------------~~l~sgs~dg~I~vwdl~~~~~--~~~~~~~  142 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGT--TSPIIID  142 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCSSSC--CCCEEEE
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCC--------------CEEEEEeCCCcEEEEEeecCCC--cceeEee
Confidence            9999999886  55556666666777777665211              1234567788899998765422  2345678


Q ss_pred             cCCCCeeEEEEcCC-------------C-eEEEEeCCCcEEEEECCCC----eEEEEee-cCCceEEEEEeeCC---CCE
Q 009614          386 GHSSEVLDLSWSKN-------------G-FLLSSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVD---DNY  443 (531)
Q Consensus       386 ~h~~~I~~l~~sp~-------------~-~l~s~s~Dg~V~lwdl~~~----~~l~~~~-h~~~V~sv~fsp~d---~~~  443 (531)
                      +|...|.+++|+|.             + +|++|+.||+|++||++++    .++..+. |...|++++|+| +   +.+
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~  221 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSY  221 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEE
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCE
Confidence            89999999999993             6 9999999999999999876    4444554 899999999999 7   899


Q ss_pred             EEEEeCCCeEEEEeCCCCe------EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          444 FISGSIDGKVRIWEVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      |++|+.||.|++||+.+++      ......|...|++++|+|+|++|++|+.||.|++|++..+.
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999999999999999863      22355688899999999999999999999999999998543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=1.3e-27  Score=280.02  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=212.5

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|.+.+.+++|+|+|+++|+|+.||.|+||+..+..       ....+.+|.+.|.+++|+|+|++|++|+.||+|+|
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            45677888899999999999999999999999998544       33468899999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.+++.+..+..+...+.++.+.+.....+              .+.++.++.+.+|+...    .+.+..+.+|.+.
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------l~sg~~d~~v~vwd~~~----~~~~~~~~~h~~~  745 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL--------------LATGSNDFFLKLWDLNQ----KECRNTMFGHTNS  745 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCE--------------EEEEETTSCEEEEETTS----SSEEEEECCCSSC
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceE--------------EEEEeCCCeEEEEECCC----cchhheecCCCCC
Confidence            99999999888888888888887776543332              24566778899998765    3457788899999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--------------------------------------------
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------------------------------------------  425 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--------------------------------------------  425 (531)
                      |.+++|+|++ +|++++.|++|++||+.+++....+                                            
T Consensus       746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            9999999999 9999999999999999776544332                                            


Q ss_pred             ------------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          426 ------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       426 ------------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                                  .|...|++++|+| ++.++++++.||.|++||+.++..+ .+.+|...|++++|+|+|++|++++.||
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence                        3667889999999 9999999999999999999998877 5788999999999999999999999999


Q ss_pred             cEEEEeCCC
Q 009614          493 NCRFYDIKD  501 (531)
Q Consensus       493 ~I~iwd~~~  501 (531)
                      .|++|++.+
T Consensus       905 ~v~vw~~~~  913 (1249)
T 3sfz_A          905 TIRVWETKK  913 (1249)
T ss_dssp             CEEEEEHHH
T ss_pred             eEEEEEccc
Confidence            999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=262.24  Aligned_cols=242  Identities=11%  Similarity=0.026  Sum_probs=175.1

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC------CCEEEEEeCCCcEEEEEcccCcccc
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      +..+++++.|++|+||++.......   .....+.+|.+.|++|+|+|+      +.+||+|+.||+|+|||+.++....
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             hhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            3344556688999999987543211   112346778899999999996      5799999999999999998764321


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE--EEcC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL--SWSK  398 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l--~~sp  398 (531)
                      ........  .......+...+.++.+...    ..++.++.|+.+.+|+....   ..+...+.+|...|.+|  .|+|
T Consensus       250 ~~~~~~~~--p~~~l~~h~~~v~sv~~s~~----~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~  320 (524)
T 2j04_B          250 HVFKMCEK--PSLTLSLADSLITTFDFLSP----TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSD  320 (524)
T ss_dssp             SEEECCCS--CSEEECCTTTCEEEEEESSS----SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCT
T ss_pred             ccceeecC--ceEEEEcCCCCEEEEEecCC----CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCC
Confidence            00000000  00011112233333333321    13567889999999998753   23456788999999999  5788


Q ss_pred             CC--eEEEEeCCCcEEEEECCCCeEEEEee-cC--CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE-EEecCCCCc
Q 009614          399 NG--FLLSSSADKTVRLWQVGIDRCLRVFS-HN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-VDYTDIREI  472 (531)
Q Consensus       399 ~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~--~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~-~~~~~~~~~  472 (531)
                      ++  +|++++.|++|+|||+++++++..+. |.  ..|.+++|+| ++..|++++.|++|+|||++++.+ ..+.+|...
T Consensus       321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~  399 (524)
T 2j04_B          321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT  399 (524)
T ss_dssp             TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC
T ss_pred             CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCc
Confidence            75  78999999999999999887766653 43  3588999999 899999999999999999999876 357789999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      |++|+|+|+|++|++|+.||+|++||+..
T Consensus       400 V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          400 ITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             eEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            99999999999999999999999999754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=4.4e-28  Score=243.49  Aligned_cols=248  Identities=13%  Similarity=0.194  Sum_probs=192.1

Q ss_pred             eeeccccceeeeCC---CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEE------EccCCCEEEEEe
Q 009614          233 RIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK------FSLDGQYLASGG  303 (531)
Q Consensus       233 ~~~~~~~s~~fspd---g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~------fspdg~~Lasgs  303 (531)
                      .|...+.+++|+|+   +.++++|+.||.|++|++.....      ....+.+|...|.++.      |+|++++|++|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~  136 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS  136 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEe
Confidence            35567888999999   69999999999999999986541      2346889999999995      468999999999


Q ss_pred             CCCcEEEEEcccCc-cccceecCCC----CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          304 EDGTVRVWKVIEHE-RLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      .||.|++||+.++. ....+..+..    .+.++.+...         +.   ......+.++.++.+.+|+.....   
T Consensus       137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~---~~~~~l~~~~~d~~i~i~d~~~~~---  201 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA---------YN---QEERVVCAGYDNGDIKLFDLRNMA---  201 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC---------CC----CCCEEEEEETTSEEEEEETTTTE---
T ss_pred             CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec---------cC---CCCCEEEEEccCCeEEEEECccCc---
Confidence            99999999999876 4555544333    2222222110         00   011233456677889999877643   


Q ss_pred             cceeEeecCCCCeeEEEEcC---CC-eEEEEeCCCcEEEEECCCCeEEEEe------ecCCceEEEEEeeCCCC-EEEEE
Q 009614          379 KPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDN-YFISG  447 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp---~~-~l~s~s~Dg~V~lwdl~~~~~l~~~------~h~~~V~sv~fsp~d~~-~l~sg  447 (531)
                        ......|...|.+++|+|   ++ +|++++.|+.|++||+++++++..+      .|...|++++|+| ++. +|++|
T Consensus       202 --~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~  278 (357)
T 3i2n_A          202 --LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTA  278 (357)
T ss_dssp             --EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEE
T ss_pred             --eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEE
Confidence              234467889999999999   77 9999999999999999876654433      4899999999999 777 89999


Q ss_pred             eCCCeEEEEeCCCC-------------------e-EEEecCCCCceEEEEEccCCCEEE-EEeCCCcEEEEeCCCCeE
Q 009614          448 SIDGKVRIWEVRRC-------------------Q-VVDYTDIREIVSAVCYCPDGKGGI-VGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       448 s~Dg~I~Iwd~~~~-------------------~-~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~~~~l  504 (531)
                      +.||.|++||++.+                   + +..+..|...|++++|+|++++|+ +++.||.|+|||+.+.++
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999999999753                   2 335778999999999999999998 799999999999987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.7e-27  Score=238.08  Aligned_cols=266  Identities=11%  Similarity=0.079  Sum_probs=204.9

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~  309 (531)
                      ...|.+.+.+++|+|++.+|++|+.||.|+||++.......    ....+.+|...|++++|+|+++ +|++|+.||.|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            34677888999999999999999999999999987554211    1234568999999999999999 999999999999


Q ss_pred             EEEc-ccCccccceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc-----Ccce
Q 009614          310 VWKV-IEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-----EKPL  381 (531)
Q Consensus       310 iWd~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  381 (531)
                      +||+ .+++. ..+..  +...+.++.+.+  ..               ..+.++.++.+.+|+.......     .+++
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~---------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG--DD---------------KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET--TT---------------EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC--CC---------------EEEEEcCCCeEEEEcccccccccccccCCee
Confidence            9999 77654 44554  555566666654  11               2245567788899987651110     2234


Q ss_pred             eEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCC-CeEE---EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCL---RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~-~~~l---~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      ..+. |...|.+++|+|++ +++++.|+.|++||+++ +...   ....|...|++++|+|.++++|++++.||.|+||+
T Consensus       145 ~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             SSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             eEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence            4444 88999999999987 99999999999999988 5432   33348889999999984578999999999999999


Q ss_pred             CCCC------eEE-EecCCCC---------ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCc
Q 009614          458 VRRC------QVV-DYTDIRE---------IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK  521 (531)
Q Consensus       458 ~~~~------~~~-~~~~~~~---------~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~  521 (531)
                      +...      +.. .+..|..         .|++++|+|++++|++++.||.|++||+.+++++..+..+       +..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------h~~  295 (342)
T 1yfq_A          223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-------NED  295 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-------SSS
T ss_pred             EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-------cCC
Confidence            9775      332 4555544         9999999999999999999999999999999887654321       145


Q ss_pred             eeeeEE
Q 009614          522 RITGFQ  527 (531)
Q Consensus       522 ~It~l~  527 (531)
                      .|++++
T Consensus       296 ~v~~~~  301 (342)
T 1yfq_A          296 SVVKIA  301 (342)
T ss_dssp             EEEEEE
T ss_pred             CceEec
Confidence            666665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2.2e-27  Score=246.71  Aligned_cols=257  Identities=17%  Similarity=0.237  Sum_probs=202.8

Q ss_pred             ceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccc---cccccceEEcccCCCEEEEEEccCCC-EEEEEeCC
Q 009614          231 MARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSREL---SSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGED  305 (531)
Q Consensus       231 ~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D  305 (531)
                      ...|.+.+.+++|+|+ +.++|+|+.+|.|+||++.......   ........+.+|...|++|+|+|++. +|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            4457788899999997 6799999999999999997532111   11334457889999999999999988 99999999


Q ss_pred             CcEEEEEcccCcc-------ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          306 GTVRVWKVIEHER-------LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       306 g~I~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      |.|++|++.++..       ...+..+...+.++.|.+....               ..+.++.++.+.+|+.+.... .
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~---------------~l~s~~~dg~i~i~d~~~~~~-~  267 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES---------------LFGSVADDQKLMIWDTRNNNT-S  267 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEETTCSCS-S
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC---------------EEEEEeCCCeEEEEECCCCCC-C
Confidence            9999999987432       2223344444555555443222               234556788899998875321 2


Q ss_pred             cceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      +++..+..|...|++++|+|++  +|++|+.|++|++||+++ ..++..+. |...|++++|+|....+|++++.|+.|+
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence            4567778999999999999988  688999999999999997 56677775 9999999999993336899999999999


Q ss_pred             EEeCCC--------------CeE-EEecCCCCceEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 009614          455 IWEVRR--------------CQV-VDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       455 Iwd~~~--------------~~~-~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~~~~  503 (531)
                      |||+..              .++ ....+|...|++++|+|+++ +|++++.||.|+||++..+.
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            999987              233 35678889999999999999 89999999999999997644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=5.6e-28  Score=244.36  Aligned_cols=252  Identities=12%  Similarity=0.127  Sum_probs=198.4

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+..|...+.+++|+|++.++++|+.||.|++|++......     ....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  121 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  121 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-----eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence            34556778889999999999999999999999998654321     1223467999999999999999999999999999


Q ss_pred             EEEcccCcc---ccce-ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc----------
Q 009614          310 VWKVIEHER---LDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR----------  375 (531)
Q Consensus       310 iWd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  375 (531)
                      +||+..+..   ...+ ..+...+.++.+.++.                ...+.++.++.+.+|+.....          
T Consensus       122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  185 (372)
T 1k8k_C          122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----------------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPW  185 (372)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----------------SEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             EEEecCCCcceeeeeeecccCCCeeEEEEcCCC----------------CEEEEEcCCCCEEEEEccccccccccccccc
Confidence            999988763   1222 2233444455544432                123455667788888854211          


Q ss_pred             ----ccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeC
Q 009614          376 ----LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI  449 (531)
Q Consensus       376 ----~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~  449 (531)
                          ...+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++.+|++| .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~  263 (372)
T 1k8k_C          186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-H  263 (372)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-T
T ss_pred             ccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-e
Confidence                1245677788999999999999999 99999999999999999999998886 888999999999 88888887 8


Q ss_pred             CCeEEEEeCCC--CeE---------------------------------------EEe-cCCCCceEEEEEc-cCC---C
Q 009614          450 DGKVRIWEVRR--CQV---------------------------------------VDY-TDIREIVSAVCYC-PDG---K  483 (531)
Q Consensus       450 Dg~I~Iwd~~~--~~~---------------------------------------~~~-~~~~~~v~~v~~s-pdg---~  483 (531)
                      |+.|++|++.+  ++.                                       ..+ .+|...|++++|. ++|   .
T Consensus       264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~  343 (372)
T 1k8k_C          264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  343 (372)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence            99999999988  431                                       122 4889999999977 566   9


Q ss_pred             EEEEEeCCCcEEEEeCCCCeE
Q 009614          484 GGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      +|++|+.||.|++|++.+++.
T Consensus       344 ~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          344 QFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             EEEEEETTSEEEEEEHHHHHH
T ss_pred             eEEEecCCCceEEEEecChhH
Confidence            999999999999999977543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.4e-27  Score=242.95  Aligned_cols=196  Identities=10%  Similarity=0.103  Sum_probs=159.6

Q ss_pred             cccceeeeCCCCeEEe--eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          237 RHGSATLKPGDHELTL--GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       237 ~~~s~~fspdg~~las--gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      .+.+++|+|||+++|+  |+.|++|+|||.......       ..+ .|.+.|++|+|+|||++|++++.|+ +++|+..
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-------~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~  205 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-------FEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTV  205 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-------EEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-------EEe-CCCCceEEEEEccCCceEEecccee-EEEEEec
Confidence            3556899999999865  557899999999854432       233 4788999999999999999998654 6666665


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      ++....                                                            .....+|...|.++
T Consensus       206 ~~~~~~------------------------------------------------------------~~~~~~~~~~v~~v  225 (365)
T 4h5i_A          206 TGSCIA------------------------------------------------------------RKTDFDKNWSLSKI  225 (365)
T ss_dssp             TCCEEE------------------------------------------------------------EECCCCTTEEEEEE
T ss_pred             cCccee------------------------------------------------------------eeecCCCCCCEEEE
Confidence            544211                                                            12234578889999


Q ss_pred             EEcCCC-eEEEEeCCC----cEEEEECCCCeEE----EEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          395 SWSKNG-FLLSSSADK----TVRLWQVGIDRCL----RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg----~V~lwdl~~~~~l----~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      +|+|++ ++++++.|+    .+++|++......    ..+ .|...|++++|+| ++++||+|+.|++|+|||+.+++++
T Consensus       226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEE
Confidence            999999 889988887    6889998776542    222 3889999999999 9999999999999999999999987


Q ss_pred             E--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          465 D--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       465 ~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      .  +.+|...|++|+|+|||++||+|+.|++|+||++..+
T Consensus       305 ~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          305 KIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            5  3679999999999999999999999999999999654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=5.5e-27  Score=231.27  Aligned_cols=232  Identities=17%  Similarity=0.189  Sum_probs=179.8

Q ss_pred             EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC--ccccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (531)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+||++...  +.+..+..+...+.++.|.+....              ..
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g--------------~~   69 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--------------TI   69 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC--------------SE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC--------------CE
Confidence            46789999999999999999999999999999999743  455666667666666666543211              22


Q ss_pred             ccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeE--EEEe-ecCCc
Q 009614          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC--LRVF-SHNNY  430 (531)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~--l~~~-~h~~~  430 (531)
                      .++++.|+.+.+|+.....  ...+..+.+|...|.+++|+|+  + +|++++.|++|++||++++..  ...+ .|...
T Consensus        70 l~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSC--BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EEEEcCCCEEEEEEcCCCc--eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence            3567788899999876422  1245667889999999999997  6 999999999999999987632  2233 59999


Q ss_pred             eEEEEEeeCC-------------CCEEEEEeCCCeEEEEeCCCCe----EE-EecCCCCceEEEEEccCC---CEEEEEe
Q 009614          431 VTSVAFNPVD-------------DNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPDG---KGGIVGT  489 (531)
Q Consensus       431 V~sv~fsp~d-------------~~~l~sgs~Dg~I~Iwd~~~~~----~~-~~~~~~~~v~~v~~spdg---~~l~sgs  489 (531)
                      |++++|+| +             +++|++|+.|++|+|||+++++    .. .+.+|...|.+++|+|++   .+|++++
T Consensus       148 v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          148 VNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             EEEEEECC-CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             cceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            99999999 4             5799999999999999998754    33 578899999999999985   8999999


Q ss_pred             CCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          490 MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       490 ~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .|++|+|||+.++....... .+.  ...+...|.+++|+|
T Consensus       227 ~D~~v~iWd~~~~~~~~~~~-~~~--~~~~~~~v~~~~~s~  264 (297)
T 2pm7_B          227 QDRTCIIWTQDNEQGPWKKT-LLK--EEKFPDVLWRASWSL  264 (297)
T ss_dssp             TTSCEEEEEESSTTSCCEEE-ESS--SSCCSSCEEEEEECS
T ss_pred             CCCcEEEEEeCCCCCcccee-eee--cccCCCcEEEEEECC
Confidence            99999999998753211111 010  123346789999987

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=2.5e-27  Score=240.29  Aligned_cols=253  Identities=19%  Similarity=0.238  Sum_probs=173.3

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE------DGTVRVWKVI  314 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~iWd~~  314 (531)
                      +.+.+++.++ .+..+.....|++...           ...+|...|++|+|+|||++||+|+.      |+.|++|+..
T Consensus        11 ~d~g~~~~~~-~~~g~~~~~~w~~p~~-----------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~   78 (357)
T 4g56_B           11 VDLGTENLYF-QSNGSSKGSAWGRPVT-----------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP   78 (357)
T ss_dssp             -----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC
T ss_pred             CCCCccceEE-ecCCCccccccCCCCC-----------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC
Confidence            4455555444 3444677888876521           23469999999999999999999998      7789999987


Q ss_pred             cCccccce----ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          315 EHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       315 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ++.....+    ..+...+.++.|.++.                 ..+.++.++.+.+|+...............+|...
T Consensus        79 ~~~~~~~~~~~~~~~~~~V~~~~~s~d~-----------------~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~  141 (357)
T 4g56_B           79 EGAPNESLCTAGVQTEAGVTDVAWVSEK-----------------GILVASDSGAVELWEILEKESLLVNKFAKYEHDDI  141 (357)
T ss_dssp             C---CGGGCSEEEECSSCEEEEEEETTT-----------------EEEEEETTSCEEEC--------CCCCEEECCCSSC
T ss_pred             CCCcceeEecccCCCCCCEEEEEEcCCC-----------------CEEEEECCCEEEEeeccccceeEEEeeccCCCCCC
Confidence            76543332    2334445555555432                 12345667889999876654433334456689999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---  465 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---  465 (531)
                      |++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.|+.|+|||+++++...   
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~  221 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID  221 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee
Confidence            9999999999 99999999999999999999999886 999999999999444689999999999999999987653   


Q ss_pred             ecCCCCceEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ...+...+++++|+|++ .+|++|+.|+.|++||+.+++++..+.        .+...|++++|+|
T Consensus       222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--------~~~~~v~~l~~sp  279 (357)
T 4g56_B          222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--------VHSQNITGLAYSY  279 (357)
T ss_dssp             CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--------CCSSCEEEEEECS
T ss_pred             eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--------ccceeEEEEEEcC
Confidence            44567789999999974 688999999999999999988766543        2346889999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-26  Score=241.78  Aligned_cols=268  Identities=13%  Similarity=0.081  Sum_probs=199.5

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCc---cccc--c------------------------------------
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS---RELS--S------------------------------------  273 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~---~~~~--~------------------------------------  273 (531)
                      ..++.+++|+|+|++++++ .++.|++|++.++.   ....  .                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3466788999999966665 57899999987665   1100  0                                    


Q ss_pred             ---------cccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcc--cCcccccee--cCCCCCeeEEEeecCC
Q 009614          274 ---------LYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVI--EHERLDGFD--VQDTDPSCLYFTINHL  339 (531)
Q Consensus       274 ---------~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~--~~~~~~~~~--~~~~~~~~~~~~~~~~  339 (531)
                               ........+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .+...+.++.|.++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                     00011223567789999999999996 899999999999998  777766665  2334455555554332


Q ss_pred             cceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC---C-eEEEEeCCCcEEEEE
Q 009614          340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQ  415 (531)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~---~-~l~s~s~Dg~V~lwd  415 (531)
                                      ..+.++.++.+.+|+.........+...+.+|...|.+++|+|+   + +|++++.|++|++||
T Consensus       163 ----------------~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd  226 (450)
T 2vdu_B          163 ----------------TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH  226 (450)
T ss_dssp             ----------------EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred             ----------------EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence                            12334456777777765443322244577889999999999999   8 999999999999999


Q ss_pred             CCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec--------------------------
Q 009614          416 VGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--------------------------  467 (531)
Q Consensus       416 l~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~--------------------------  467 (531)
                      +.+++++..+  .|...|++++|+  ++++|++|+.|+.|+|||+.+++++...                          
T Consensus       227 ~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (450)
T 2vdu_B          227 YPQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND  304 (450)
T ss_dssp             ESCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred             CCCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence            9999888774  499999999999  8999999999999999999999876422                          


Q ss_pred             CCCCceEEEEEccCCCEEEEEe-CCCcEEEEeC--CCC---eEEEEeeeeecccccCCCceeeeEEEee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDI--KDN---QLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~--~~~---~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .....|..++|+|++++|++++ .++.|+||++  .++   +++..+.    +    + ..|++++|+|
T Consensus       305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~----~----~-~~v~~~~~~~  364 (450)
T 2vdu_B          305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT----F----P-YNVISLSAHN  364 (450)
T ss_dssp             CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE----C----S-SCEEEEEEET
T ss_pred             cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec----c----C-CceEEEEecC
Confidence            2345799999999999999999 8999999999  555   3333222    1    1 5678888876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.2e-26  Score=230.44  Aligned_cols=268  Identities=16%  Similarity=0.178  Sum_probs=207.2

Q ss_pred             cccceeeeccccceeeeCC---CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          228 LGAMARIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       228 ~~~~~~~~~~~~s~~fspd---g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      +..+..|.+.+.+++|+|+   |.+|++|+.||.|+||++......     ....+.+|.+.|++++|+|++++|++|+.
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----IPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----EEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----eEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            3356678889999999999   699999999999999999852221     12457889999999999999999999999


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      ||.|++||+.+++... +..+...+.++.+.+.....              ..+.++.++.+.+|+....    +++..+
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~--------------~l~~~~~dg~i~vwd~~~~----~~~~~~  167 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS--------------CVMTGSWDKTLKFWDTRSS----NPMMVL  167 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE--------------EEEEEETTSEEEEECSSCS----SCSEEE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC--------------EEEEccCCCcEEEEECCCC----cEEEEE
Confidence            9999999999887654 44455566666664333222              2345677888999998763    445666


Q ss_pred             ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCE----EEEEeCCCeEEEEe
Q 009614          385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNY----FISGSIDGKVRIWE  457 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~----l~sgs~Dg~I~Iwd  457 (531)
                      ..|. .+.++.+.++ .+++++.++.+++|++..........   +...+.++++.+ +...    +++++.||.|++||
T Consensus       168 ~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          168 QLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             ECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEE
T ss_pred             ecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEe
Confidence            6554 6777777654 88888999999999998765443332   556677777776 5544    99999999999999


Q ss_pred             CCCCe----EEEecCCCC------------ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCc
Q 009614          458 VRRCQ----VVDYTDIRE------------IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK  521 (531)
Q Consensus       458 ~~~~~----~~~~~~~~~------------~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~  521 (531)
                      +....    ...+..|..            .|++++|+|++++|++|+.||.|++||+.+++++..+.        .+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~  316 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--------QLDQ  316 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--------CCSS
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--------CCCC
Confidence            99863    223455544            79999999999999999999999999999998876543        3456


Q ss_pred             eeeeEEEee
Q 009614          522 RITGFQVVK  530 (531)
Q Consensus       522 ~It~l~f~p  530 (531)
                      .|++++|+|
T Consensus       317 ~v~~~~~s~  325 (368)
T 3mmy_A          317 PISACCFNH  325 (368)
T ss_dssp             CEEEEEECT
T ss_pred             CceEEEECC
Confidence            899999987

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=9.3e-26  Score=235.11  Aligned_cols=277  Identities=19%  Similarity=0.374  Sum_probs=214.8

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|.+.+.. +++++|+++++|+.||.|++|++.+..       ....+.+|.+.|++++|+  +++|++|+.||+|+
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            35556555433 577789999999999999999998543       334678999999999997  66999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeec------CCcceeeeecccccc----------------ccccccccCCCceEE
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTIN------HLSQLIPIDVDKEKI----------------DKTKSLRKSSDLTCV  367 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~  367 (531)
                      +||+.+++.+..+..+...+.++.+...      ..+.+..++......                .....+.++.++.+.
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~  262 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  262 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEE
Confidence            9999999988888877777766665321      111222222221111                112335566778888


Q ss_pred             EeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEE
Q 009614          368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~  445 (531)
                      +|+...    .+++..+.+|...|.++.|  ++ ++++++.|+.|++||+++++++..+. |...+.++.++   +++|+
T Consensus       263 iwd~~~----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~  333 (445)
T 2ovr_B          263 VWDPET----ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILV  333 (445)
T ss_dssp             EEEGGG----TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEE
T ss_pred             EEECCC----CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEE
Confidence            887655    3457788899999999999  45 99999999999999999999998886 88889988874   57999


Q ss_pred             EEeCCCeEEEEeCCCCeEEE-ecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCc
Q 009614          446 SGSIDGKVRIWEVRRCQVVD-YTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK  521 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~~~~~-~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~  521 (531)
                      +|+.||.|++||+.+++.+. +..   |...|++++|+  +++|++|+.||.|++||+.+++++..+....   ...+..
T Consensus       334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~  408 (445)
T 2ovr_B          334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE---SGGSGG  408 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT---TGGGTC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc---cCCCCc
Confidence            99999999999999988774 443   78899999995  6899999999999999999999887664321   123457


Q ss_pred             eeeeEEEee
Q 009614          522 RITGFQVVK  530 (531)
Q Consensus       522 ~It~l~f~p  530 (531)
                      .|++++|+|
T Consensus       409 ~v~~~~~s~  417 (445)
T 2ovr_B          409 VVWRIRASN  417 (445)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEEecC
Confidence            899999987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.4e-27  Score=249.93  Aligned_cols=253  Identities=10%  Similarity=0.059  Sum_probs=190.7

Q ss_pred             ceeeeccccceeeeCC------CCeEEeeecCCeEEEEeCCCCcccc----cccccceEEcccCCCEEEEEEccCCCEEE
Q 009614          231 MARIIDRHGSATLKPG------DHELTLGQRMRRVRVHPVKKQSREL----SSLYTGQEFLAHEGSILTMKFSLDGQYLA  300 (531)
Q Consensus       231 ~~~~~~~~~s~~fspd------g~~lasgs~dg~I~vwd~~~~~~~~----~~~~~~~~l~~H~~~I~~l~fspdg~~La  300 (531)
                      +.++...+.+++|+|+      +.+||+|+.||+|+||++.......    ........+.+|...|++++|++++ .|+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la  281 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV  281 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence            3445567788999997      5799999999999999997653210    0111234688999999999999864 899


Q ss_pred             EEeCCCcEEEEEcccCcc-ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          301 SGGEDGTVRVWKVIEHER-LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      +|+.||+|++||+.++.. ...+..+...+.++.+......             ....++++.|+.+.+|+.+....   
T Consensus       282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g-------------~~~laS~S~D~tvklWD~~~~~~---  345 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE-------------DTVVSTVAVDGYFYIFNPKDIAT---  345 (524)
T ss_dssp             EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS-------------CCEEEEEETTSEEEEECGGGHHH---
T ss_pred             EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC-------------CeEEEEeccCCeEEEEECCCCCc---
Confidence            999999999999987643 2335555555555532211111             02235678899999999876432   


Q ss_pred             ceeEeecCCC--CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          380 PLHEFQGHSS--EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       380 ~~~~~~~h~~--~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                       +..+.+|..  .|.+++|+|++ .|++++.|++|++||++++.++..+ .|...|++|+|+| ++++|++|+.||+|+|
T Consensus       346 -~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~l  423 (524)
T 2j04_B          346 -TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLII  423 (524)
T ss_dssp             -HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEEC
T ss_pred             -ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEE
Confidence             345556653  58899999998 9999999999999999999887666 5999999999999 9999999999999999


Q ss_pred             EeCCCC---------------eE------------------------------EEecCCCCceEEEEEccCCC---EEEE
Q 009614          456 WEVRRC---------------QV------------------------------VDYTDIREIVSAVCYCPDGK---GGIV  487 (531)
Q Consensus       456 wd~~~~---------------~~------------------------------~~~~~~~~~v~~v~~spdg~---~l~s  487 (531)
                      ||+..+               .+                              ..+.+|...|++|+|+|+++   +|++
T Consensus       424 wd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAs  503 (524)
T 2j04_B          424 TNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAF  503 (524)
T ss_dssp             CBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEE
T ss_pred             EechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHh
Confidence            985321               01                              11334667899999999964   9999


Q ss_pred             EeCCCcEEEEeCCCC
Q 009614          488 GTMTGNCRFYDIKDN  502 (531)
Q Consensus       488 gs~dg~I~iwd~~~~  502 (531)
                      |+.+|.|+||++...
T Consensus       504 g~~~g~vrlw~l~~~  518 (524)
T 2j04_B          504 SNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ECTTSEEEEEECSCC
T ss_pred             hccCceEEEEEcccc
Confidence            999999999998753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.6e-27  Score=264.15  Aligned_cols=293  Identities=11%  Similarity=0.061  Sum_probs=201.3

Q ss_pred             ceeeeccccceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccc------------eEEcccCCCEEEEEEccCCC
Q 009614          231 MARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQ  297 (531)
Q Consensus       231 ~~~~~~~~~s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fspdg~  297 (531)
                      +..|...+.+++|+|+ +..+++|+.||.| +||+........ +...            ....+|...|++++|+|+|+
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQS-FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEE-ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEE-EecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            3557788899999996 4789999999999 999986542210 0000            01123568899999999999


Q ss_pred             EEEEEeCCCcEEEEEcccCccccc--ee---cC-------------CCCCeeEEEeecCC----cceeeeecccc----c
Q 009614          298 YLASGGEDGTVRVWKVIEHERLDG--FD---VQ-------------DTDPSCLYFTINHL----SQLIPIDVDKE----K  351 (531)
Q Consensus       298 ~Lasgs~Dg~I~iWd~~~~~~~~~--~~---~~-------------~~~~~~~~~~~~~~----~~~~~~~~~~~----~  351 (531)
                      +||+|+.||+|++||+.+++.+..  +.   .+             ...+..+.|.+...    ..++....+..    .
T Consensus       225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~  304 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS  304 (902)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence            999999999999999998876542  21   11             12344555644211    11111101000    0


Q ss_pred             c---------------------------------------------------------ccccccccCCCceEEEeCCccc
Q 009614          352 I---------------------------------------------------------DKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       352 ~---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                      +                                                         .....+..+.++.+.+|+....
T Consensus       305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g  384 (902)
T 2oaj_A          305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG  384 (902)
T ss_dssp             EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence            0                                                         0001122233566777764221


Q ss_pred             ccc-------------------------------------CcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEEC
Q 009614          375 RLL-------------------------------------EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV  416 (531)
Q Consensus       375 ~~~-------------------------------------~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl  416 (531)
                      ...                                     ......+.+|...+..++|+|++ +|++|+.|++|++||+
T Consensus       385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~  464 (902)
T 2oaj_A          385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA  464 (902)
T ss_dssp             CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred             CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence            100                                     00112245667777778888988 9999999999999999


Q ss_pred             CCCeEE-----EE-e------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe----------------------
Q 009614          417 GIDRCL-----RV-F------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----------------------  462 (531)
Q Consensus       417 ~~~~~l-----~~-~------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----------------------  462 (531)
                      .++...     .. +      .|...|++|+|+| ++++||+|+.||+|+|||+.+++                      
T Consensus       465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (902)
T 2oaj_A          465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL  543 (902)
T ss_dssp             SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred             CCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence            877421     11 1      5788999999999 99999999999999999997652                      


Q ss_pred             ------------------------EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          463 ------------------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       463 ------------------------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                                              ...+.+|...|++|+|+||| +||+|+.||+|+|||+.++.++....+  ......
T Consensus       544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~--~~~~~g  620 (902)
T 2oaj_A          544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI--REISGA  620 (902)
T ss_dssp             GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG--GGTCSS
T ss_pred             cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh--hHhccc
Confidence                                    23467799999999999999 999999999999999998888754332  111125


Q ss_pred             CCceeeeEEEe
Q 009614          519 PGKRITGFQVV  529 (531)
Q Consensus       519 ~~~~It~l~f~  529 (531)
                      |...|++|+|+
T Consensus       621 h~~~V~sv~Fs  631 (902)
T 2oaj_A          621 QSACVTCIEFV  631 (902)
T ss_dssp             CCCCEEEEEEE
T ss_pred             cccceEEEEEE
Confidence            67889999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=5.5e-27  Score=239.11  Aligned_cols=242  Identities=13%  Similarity=0.078  Sum_probs=188.1

Q ss_pred             eeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          234 IIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       234 ~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      |...+.+++|+| ++.++++|+.|+.|++|++.....     .......+|...|.+++|+|++++|++|+.||.|++||
T Consensus       117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-----QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-----EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-----EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            556778899999 789999999999999999984221     11111234568899999999999999999999999999


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      + +++.+..+..+...+.++.+.+....               ..+.++.++.+.+|+..........+..+ +|...|.
T Consensus       192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~---------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~  254 (383)
T 3ei3_B          192 L-DGHEIFKEKLHKAKVTHAEFNPRCDW---------------LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVN  254 (383)
T ss_dssp             T-TSCEEEEEECSSSCEEEEEECSSCTT---------------EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEE
T ss_pred             C-CCCEEEEeccCCCcEEEEEECCCCCC---------------EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceE
Confidence            9 56667777777777777777655432               22455678889999887655444455555 6999999


Q ss_pred             EEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee-c-------C----------CceEEEEEeeCCCCEEEEEeCCCe
Q 009614          393 DLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-------N----------NYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       393 ~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h-------~----------~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      +++|+| ++ +|++++.|+.|++||+++++.+..+. |       .          ..+..++|+| ++++  +|+.|+.
T Consensus       255 ~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~  331 (383)
T 3ei3_B          255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRT  331 (383)
T ss_dssp             EEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCC
T ss_pred             EEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCe
Confidence            999999 88 99999999999999999877655543 2       2          3344466666 5555  6778999


Q ss_pred             EEEEeCCCCeEEE-ecC--CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          453 VRIWEVRRCQVVD-YTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       453 I~Iwd~~~~~~~~-~~~--~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      |+|||+.+++.+. +..  +...+..++|+|++++|++|+ ||.|+|||+++
T Consensus       332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999999998774 443  567788889999999999997 99999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.9e-27  Score=241.73  Aligned_cols=247  Identities=11%  Similarity=0.082  Sum_probs=180.6

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+..|...+.+++|+|++++|++|+.|+.|++|++....    .......+.+|...|++++|+|++++|++|+.|+.|+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            455677888899999999999999999999999998654    1223345778999999999999999999999999999


Q ss_pred             EEEcccCcc---ccceec-CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc---------
Q 009614          310 VWKVIEHER---LDGFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------  376 (531)
Q Consensus       310 iWd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  376 (531)
                      +||+.+++.   ...+.. +...+.++.+.++..                ..+.++.++.+.+|+......         
T Consensus       126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  189 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV----------------LLAAGCADRKAYVLSAYVRDVDAKPEASVW  189 (377)
T ss_dssp             ECCC-----CCCCEEECSSCCSCEEEEEECTTSS----------------EEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred             EEEECCcccceeeeEeecccCCCeEEEEEcCCCC----------------EEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence            999988763   445554 555566666655331                234556677788887642221         


Q ss_pred             -----cCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE----EEEee-cCCceEEEEEeeCCCCEEE
Q 009614          377 -----LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC----LRVFS-HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       377 -----~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~----l~~~~-h~~~V~sv~fsp~d~~~l~  445 (531)
                           ..+++..+ +|...|.+++|+|++ +|++++.|++|++||+.++++    +..+. |...|++++|+| ++.+|+
T Consensus       190 ~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  267 (377)
T 3dwl_C          190 GSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVA  267 (377)
T ss_dssp             CSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEE
T ss_pred             ccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEE
Confidence                 12345555 899999999999999 999999999999999999876    55554 889999999999 899999


Q ss_pred             EEeCCCeEEEEeCCCCe---------------------------------------EE---E-----------ecCCCCc
Q 009614          446 SGSIDGKVRIWEVRRCQ---------------------------------------VV---D-----------YTDIREI  472 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~~---------------------------------------~~---~-----------~~~~~~~  472 (531)
                      +|+.++.+ +|+.....                                       ..   .           ...|...
T Consensus       268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~  346 (377)
T 3dwl_C          268 AGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNM  346 (377)
T ss_dssp             EESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSC
T ss_pred             EEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccce
Confidence            98876665 66654211                                       00   0           1128889


Q ss_pred             eEEEEEccCC-C---EEEEEeCCCcEEEEeC
Q 009614          473 VSAVCYCPDG-K---GGIVGTMTGNCRFYDI  499 (531)
Q Consensus       473 v~~v~~spdg-~---~l~sgs~dg~I~iwd~  499 (531)
                      |+++++.+.. .   .|++|+.||.|+|||+
T Consensus       347 i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          347 IATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             eEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            9999977644 3   6999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-26  Score=260.18  Aligned_cols=227  Identities=12%  Similarity=0.116  Sum_probs=181.5

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      ..+|...+.+++|+|++.+||+|+.||.|+||+.......        ....|..+|++|+|+| |++|++++.|++|+|
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l   83 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYV   83 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence            3456778889999999999999999999999997643221        1235788999999999 889999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.+++.+                                                              ..+. |.+.
T Consensus        84 Wd~~~~~~~--------------------------------------------------------------~~~~-~~~~  100 (902)
T 2oaj_A           84 LSLYSQKVL--------------------------------------------------------------TTVF-VPGK  100 (902)
T ss_dssp             EETTTCSEE--------------------------------------------------------------EEEE-CSSC
T ss_pred             EECCCCcEE--------------------------------------------------------------EEEc-CCCC
Confidence            999776432                                                              2222 5578


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE-----------Ee-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR-----------VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~-----------~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      |++++|+|++ +|++|+.||+|++||+.++++..           .+ .|...|++|+|+|.++.+|++|+.||.| |||
T Consensus       101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd  179 (902)
T 2oaj_A          101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS  179 (902)
T ss_dssp             EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence            9999999999 99999999999999999887641           11 2788999999999546799999999999 999


Q ss_pred             CCCCeEEE-ecCC------------------CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee-eccccc
Q 009614          458 VRRCQVVD-YTDI------------------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGKKK  517 (531)
Q Consensus       458 ~~~~~~~~-~~~~------------------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~-~~~~kk  517 (531)
                      +++++.+. +..|                  ...|++++|+|+|++|++|+.||.|+|||+.+++++....+. ..++..
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~  259 (902)
T 2oaj_A          180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP  259 (902)
T ss_dssp             TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred             CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence            99998774 3333                  467999999999999999999999999999999887542211 011110


Q ss_pred             ---------CCCceeeeEEEee
Q 009614          518 ---------LPGKRITGFQVVK  530 (531)
Q Consensus       518 ---------~~~~~It~l~f~p  530 (531)
                               .+...|++++|+|
T Consensus       260 ~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          260 QPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             CTTCCCCCSSCCCEEEEEEEEE
T ss_pred             CCcCCCCCccccCCeeEEEEEe
Confidence                     1235799999964

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=4e-26  Score=234.63  Aligned_cols=225  Identities=20%  Similarity=0.280  Sum_probs=183.1

Q ss_pred             ceeeeCCCCeEE-eeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCc
Q 009614          240 SATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       240 s~~fspdg~~la-sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      .++++|+...++ +|+.+|.|+||++.......   .....+.+|.+.|++++|+| ++++|++|+.||+|+||++.++.
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            477888776554 57899999999997543321   12234789999999999999 99999999999999999997764


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                      .....                                                       ..++..+.+|...|.+++|+
T Consensus       116 ~~~~~-------------------------------------------------------~~~~~~~~~h~~~v~~~~~~  140 (402)
T 2aq5_A          116 LVLPL-------------------------------------------------------REPVITLEGHTKRVGIVAWH  140 (402)
T ss_dssp             CSSCB-------------------------------------------------------CSCSEEEECCSSCEEEEEEC
T ss_pred             Ccccc-------------------------------------------------------CCceEEecCCCCeEEEEEEC
Confidence            32110                                                       12456778999999999999


Q ss_pred             CCC--eEEEEeCCCcEEEEECCCCeEEEEe--e-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-e-cCCC
Q 009614          398 KNG--FLLSSSADKTVRLWQVGIDRCLRVF--S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y-TDIR  470 (531)
Q Consensus       398 p~~--~l~s~s~Dg~V~lwdl~~~~~l~~~--~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~-~~~~  470 (531)
                      |++  +|++++.|++|++||+.+++++..+  . |...|++++|+| ++++|++++.||.|+|||+++++.+. + ..|.
T Consensus       141 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCC
Confidence            996  8999999999999999999999888  3 899999999999 99999999999999999999998875 4 5676


Q ss_pred             Cc-eEEEEEccCCCEEEEE---eCCCcEEEEeCCCCeE-EEEeeeeecccccCCCceeeeEEEee
Q 009614          471 EI-VSAVCYCPDGKGGIVG---TMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       471 ~~-v~~v~~spdg~~l~sg---s~dg~I~iwd~~~~~l-~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .. +..++|+|++++|++|   +.|+.|++||+.+++. +....       ..+...|+.++|+|
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-------LDTSSGVLLPFFDP  277 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-------CCCCSSCEEEEEET
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-------ccCCCceeEEEEcC
Confidence            65 8999999999999999   7899999999988664 22211       12234577777775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=1.5e-25  Score=233.11  Aligned_cols=247  Identities=20%  Similarity=0.359  Sum_probs=199.9

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      .++.+++.++++|+.||.|++||..+..       ....+.+|.+.|++++|  ++++|++|+.||+|++||+.+++.+.
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3566699999999999999999987543       33568899999999999  78899999999999999999998877


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~  400 (531)
                      .+..+...+.++.+.             .     ...+.++.++.+.+|+....... .....+.+|...|.+++|. ..
T Consensus       208 ~~~~h~~~v~~l~~~-------------~-----~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~-~~  267 (435)
T 1p22_A          208 TLIHHCEAVLHLRFN-------------N-----GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFD-DK  267 (435)
T ss_dssp             EECCCCSCEEEEECC-------------T-----TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEE-TT
T ss_pred             EEcCCCCcEEEEEEc-------------C-----CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEeC-CC
Confidence            776665555444432             1     13456777888999987653321 1236678899999999993 22


Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEE
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY  478 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~  478 (531)
                      +|++|+.|+.|++||+++++++..+. |...|.+++|+   ++++++|+.||.|++||+++++.+ .+.+|...|++++|
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence            99999999999999999999998886 89999999994   579999999999999999998877 47789999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCe---------EEEEeeeeecccccCCCceeeeEEEe
Q 009614          479 CPDGKGGIVGTMTGNCRFYDIKDNQ---------LYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       479 spdg~~l~sgs~dg~I~iwd~~~~~---------l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                        ++.+|++|+.||.|++||+.+++         .+..+        ..+...|++++|.
T Consensus       345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~  394 (435)
T 1p22_A          345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--------VEHSGRVFRLQFD  394 (435)
T ss_dssp             --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--------CCCSSCCCCEEEC
T ss_pred             --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec--------cCCCCCeEEEEeC
Confidence              78999999999999999997655         33322        2344677777764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3.2e-26  Score=231.83  Aligned_cols=261  Identities=10%  Similarity=0.073  Sum_probs=187.7

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~  309 (531)
                      ...|...+.+++|+|||++||+|+.++ ++||+.......         ...+...+..+++.++++++ ++++.|++|+
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            455778899999999999999998775 789997743321         12223358888999988877 5677889999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecC-----Ccceeeeecccc-ccc--------------cccccc-cCCCceEEE
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINH-----LSQLIPIDVDKE-KID--------------KTKSLR-KSSDLTCVV  368 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~--------------~~~~~~-~~~~~~~~~  368 (531)
                      +||+.+++.+..+... ..+..+.+....     ...+..++.... ...              ....+. +..++.+.+
T Consensus        85 iWd~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVD-APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEETTTTEEEEEEECS-SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EEECCCCcEEEEEECC-CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            9999999888777643 334444433221     111222222221 000              011112 577888999


Q ss_pred             eCCccccc-----------cCcc-eeEeecCCCCeeEEEEcCCC-eEEEEeCCCc-EEEEECCCCeEEEEee---cCCce
Q 009614          369 LPPKVFRL-----------LEKP-LHEFQGHSSEVLDLSWSKNG-FLLSSSADKT-VRLWQVGIDRCLRVFS---HNNYV  431 (531)
Q Consensus       369 ~~~~~~~~-----------~~~~-~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~-V~lwdl~~~~~l~~~~---h~~~V  431 (531)
                      |+......           ...+ +..+.+|.+.|.+++|+|++ +|++|+.|++ |++||+++++++..+.   |...|
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV  243 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence            98765320           0123 67889999999999999999 9999999998 9999999999999997   89999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE---Ee---------------------cCCCCceEEEEEccCCCEEEE
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DY---------------------TDIREIVSAVCYCPDGKGGIV  487 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~---~~---------------------~~~~~~v~~v~~spdg~~l~s  487 (531)
                      ++++|+| ++++|++++.|++|+|||+......   .+                     .........++|+|||++|++
T Consensus       244 ~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~  322 (355)
T 3vu4_A          244 VDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV  322 (355)
T ss_dssp             EEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred             EEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence            9999999 9999999999999999999765311   00                     011223467999999999999


Q ss_pred             EeCCCcEEEEeCCCCe
Q 009614          488 GTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       488 gs~dg~I~iwd~~~~~  503 (531)
                      ++.||.+++|++..+.
T Consensus       323 ~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          323 WPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ETTTTEEEEEEEEEET
T ss_pred             EeCCCeEEEEEEEcCC
Confidence            9999999999986544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=1.3e-26  Score=230.82  Aligned_cols=231  Identities=16%  Similarity=0.177  Sum_probs=172.6

Q ss_pred             EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (531)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+..+...+.++.|.+...              ...
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~--------------~~~   73 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY--------------GNI   73 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGG--------------SSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCC--------------CCE
Confidence            467899999999999999999999999999999998764  3455666666666666643211              123


Q ss_pred             ccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEE---EEe-ecCC
Q 009614          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCL---RVF-SHNN  429 (531)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~l---~~~-~h~~  429 (531)
                      .++++.|+.+.+|+.....  ...+..+.+|...|.+++|+|+  + +|++|+.|++|++||++.+...   ..+ .|..
T Consensus        74 l~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGT--WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EEEEETTSCEEEECCSSSC--CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EEEEECCCEEEEEECCCCc--ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            3566788899999876422  1345677899999999999997  6 8999999999999999876422   222 3888


Q ss_pred             ceEEEEEeeCC-----------------CCEEEEEeCCCeEEEEeCCCC---eEE-EecCCCCceEEEEEccCC----CE
Q 009614          430 YVTSVAFNPVD-----------------DNYFISGSIDGKVRIWEVRRC---QVV-DYTDIREIVSAVCYCPDG----KG  484 (531)
Q Consensus       430 ~V~sv~fsp~d-----------------~~~l~sgs~Dg~I~Iwd~~~~---~~~-~~~~~~~~v~~v~~spdg----~~  484 (531)
                      .|.+++|+| +                 +.+|++|+.|++|+|||+...   +.+ .+.+|...|.+++|+|++    ++
T Consensus       152 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            999999999 5                 468999999999999999764   233 477899999999999987    88


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       485 l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |++|+.||+|+||++.+..........+    ..+...|.+++|+|
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~~v~~v~~sp  272 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLL----HKFNDVVWHVSWSI  272 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEE----EECSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhh----hcCCCcEEEEEEcC
Confidence            9999999999999997631100000001    11246788999887

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=1.6e-25  Score=241.95  Aligned_cols=266  Identities=18%  Similarity=0.266  Sum_probs=213.4

Q ss_pred             ceeeecc-ccceeeeC--CCCeEEeeecCCeEEEEeCCCCccc-ccccccceEEcccCCCEEEEEEccCCCEEEEEeCC-
Q 009614          231 MARIIDR-HGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-  305 (531)
Q Consensus       231 ~~~~~~~-~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-  305 (531)
                      +..|... +.+++|+|  ++++|++|+.||.|+||++...... .........+.+|...|.+++|+|++++|++++.+ 
T Consensus        59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  138 (615)
T 1pgu_A           59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR  138 (615)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred             EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC
Confidence            4456677 88999999  9999999999999999999643100 00112334678899999999999999999999988 


Q ss_pred             ---CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          306 ---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       306 ---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                         +.|++||  .++....+..+...+.++.+.+....               ..+.++.++.+.+|+....    +.+.
T Consensus       139 ~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~l~~~~~d~~v~vwd~~~~----~~~~  197 (615)
T 1pgu_A          139 DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM---------------RSMTVGDDGSVVFYQGPPF----KFSA  197 (615)
T ss_dssp             SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC---------------EEEEEETTTEEEEEETTTB----EEEE
T ss_pred             CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCc---------------EEEEEeCCCcEEEEeCCCc----ceee
Confidence               6888888  55666667667777777777655432               2345567788999987653    4567


Q ss_pred             EeecCCC---CeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-----ecCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          383 EFQGHSS---EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       383 ~~~~h~~---~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~-----~h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      .+.+|..   .|.+++|+|+ + +|++++.|+.|++||+.+++.+..+     .|...|++++|+  ++.+|++++.|+.
T Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~  275 (615)
T 1pgu_A          198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADAT  275 (615)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred             eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCc
Confidence            7888999   9999999999 8 9999999999999999999999998     799999999999  7899999999999


Q ss_pred             EEEEeCCCCeEEE-ecCC----CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEE
Q 009614          453 VRIWEVRRCQVVD-YTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ  527 (531)
Q Consensus       453 I~Iwd~~~~~~~~-~~~~----~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~  527 (531)
                      |++||+.+++.+. +..+    ...+.++.|. ++.++++++.||.|++||+.+++++..+.        .+...|++++
T Consensus       276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~--------~~~~~v~~~~  346 (615)
T 1pgu_A          276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS--------GHNKGITALT  346 (615)
T ss_dssp             EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC--------CCSSCEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe--------CCCCCEEEEE
Confidence            9999999998775 3333    3678888885 89999999999999999999877765443        2345667766


Q ss_pred             E
Q 009614          528 V  528 (531)
Q Consensus       528 f  528 (531)
                      |
T Consensus       347 ~  347 (615)
T 1pgu_A          347 V  347 (615)
T ss_dssp             T
T ss_pred             e
Confidence            6

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=1.9e-26  Score=239.94  Aligned_cols=251  Identities=12%  Similarity=0.087  Sum_probs=185.9

Q ss_pred             ceeeeccccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      +.+|...|.+++|+| ++.+|++|+.||+|+|||+.......     ......+...+.+++|+|++++|++|+.||.|+
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~  234 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV-----FASSDTINIWFCSLDVSASSRMVVTGDNVGNVI  234 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE-----EECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE-----EeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence            345778899999998 68899999999999999987533211     111223455688999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +||+. ++.+..+..+...+.++.|.+.....               .+.++.++.+.+|+.+...... .+....+|..
T Consensus       235 ~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~---------------~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~  297 (435)
T 4e54_B          235 LLNMD-GKELWNLRMHKKKVTHVALNPCCDWF---------------LATASVDQTVKIWDLRQVRGKA-SFLYSLPHRH  297 (435)
T ss_dssp             EEESS-SCBCCCSBCCSSCEEEEEECTTCSSE---------------EEEEETTSBCCEEETTTCCSSS-CCSBCCBCSS
T ss_pred             eeccC-cceeEEEecccceEEeeeecCCCceE---------------EEEecCcceeeEEecccccccc-eEEEeeeccc
Confidence            99985 45566677777777777766544322               2345667778888876544322 2334467999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCC------ceEEEEEeeCCCCEEEEEe------------C
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN------YVTSVAFNPVDDNYFISGS------------I  449 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~------~V~sv~fsp~d~~~l~sgs------------~  449 (531)
                      .|++++|+|++ +|++++.|++|+|||+.++.+...+. |..      .+..+.|+| ++.++++++            .
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~  376 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYE  376 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTC
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecC
Confidence            99999999999 99999999999999999988766653 321      234567777 666666654            2


Q ss_pred             CCeEEEEeCCCCeEEE--ecCCCCceEEE-EEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          450 DGKVRIWEVRRCQVVD--YTDIREIVSAV-CYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v-~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ++.|++||..+++++.  ..+|...|.++ +|+|+|++|++|+ |+.|+||++++++..
T Consensus       377 ~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            3579999999998874  34677888887 6999999999876 889999999988753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-25  Score=226.19  Aligned_cols=234  Identities=18%  Similarity=0.203  Sum_probs=184.8

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc--cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      +.+.+|.+.|++++|+|++++||+|+.||.|+||++.  +++....+..+...+.++.|.+....              .
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--------------~   70 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--------------T   70 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC--------------S
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC--------------C
Confidence            4578999999999999999999999999999999998  55566666666666777776544211              1


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeE---EEEeecCC
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNN  429 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~---l~~~~h~~  429 (531)
                      ..+.++.++.+.+|+.....  ...+..+.+|...|.+++|+|+  + +|++++.|+.|++||+.++..   .....|..
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             EEEEeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            23456677888888766532  1246777889999999999998  7 999999999999999988733   23335899


Q ss_pred             ceEEEEEeeC------------CCCEEEEEeCCCeEEEEeCCCCe----EE-EecCCCCceEEEEEccC---CCEEEEEe
Q 009614          430 YVTSVAFNPV------------DDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPD---GKGGIVGT  489 (531)
Q Consensus       430 ~V~sv~fsp~------------d~~~l~sgs~Dg~I~Iwd~~~~~----~~-~~~~~~~~v~~v~~spd---g~~l~sgs  489 (531)
                      .|++++|+|.            ++.+|++|+.||.|++||++++.    +. .+..|...|++++|+|+   +++|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9999999995            58999999999999999998753    22 47789999999999999   89999999


Q ss_pred             CCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          490 MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       490 ~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .||.|+|||+.++.........   ....+...|++++|+|
T Consensus       229 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~  266 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPWKKTLL---KEEKFPDVLWRASWSL  266 (379)
T ss_dssp             TTSCEEEEEESSTTSCCEEEES---SSSCCSSCEEEEEECS
T ss_pred             CCCEEEEEeCCCCCccceeeee---ccccCCCcEEEEEEcC
Confidence            9999999999987532221111   1233557899999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=1.1e-25  Score=228.96  Aligned_cols=264  Identities=14%  Similarity=0.137  Sum_probs=190.5

Q ss_pred             cccceeeeCCCCeEEeeecC-------CeEEEEeCCCCccccc-ccc--cceEEcccCCCEEEEEEccCCCEEEEE----
Q 009614          237 RHGSATLKPGDHELTLGQRM-------RRVRVHPVKKQSRELS-SLY--TGQEFLAHEGSILTMKFSLDGQYLASG----  302 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~d-------g~I~vwd~~~~~~~~~-~~~--~~~~l~~H~~~I~~l~fspdg~~Lasg----  302 (531)
                      ++.+++|+||+++|++|+.+       +.|++|++........ .+.  ....+.+|...|.+++++  ++.+++|    
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~   93 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN   93 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence            57889999999999998753       3699999875543211 111  112467888899888775  5566665    


Q ss_pred             -------eCCCcEEEEEcccCcccccee---------cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceE
Q 009614          303 -------GEDGTVRVWKVIEHERLDGFD---------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (531)
Q Consensus       303 -------s~Dg~I~iWd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (531)
                             +.|+.+++|++.+........         .....+.++.|+++....+              ..+++.++.+
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la--------------~as~~~d~~i  159 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA--------------IASSKVPAIM  159 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE--------------EEESCSSCEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE--------------EEECCCCCEE
Confidence                   457889999987654321110         0111123344444332111              1245567889


Q ss_pred             EEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe---ecCCceEEEEEeeCCCC
Q 009614          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDN  442 (531)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~---~h~~~V~sv~fsp~d~~  442 (531)
                      .+|+.....    .+..+. |.+.|.+++|+|+| +|++++ ++.+++|+..+++.+...   .|...|.+++|+| ++.
T Consensus       160 ~iwd~~~~~----~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~  232 (365)
T 4h5i_A          160 RIIDPSDLT----EKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDT  232 (365)
T ss_dssp             EEEETTTTE----EEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTE
T ss_pred             EEeECCCCc----EEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCC
Confidence            999887643    344444 77889999999999 777777 556777777777665443   3888999999999 999


Q ss_pred             EEEEEeCCC----eEEEEeCCCCeEE-----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614          443 YFISGSIDG----KVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ  513 (531)
Q Consensus       443 ~l~sgs~Dg----~I~Iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~  513 (531)
                      ++++++.|+    .+++|++......     .+.+|...|++++|+|||++||+|+.||+|+|||+.+++++..+     
T Consensus       233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-----  307 (365)
T 4h5i_A          233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-----  307 (365)
T ss_dssp             EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred             EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-----
Confidence            999999887    6899998876532     46788999999999999999999999999999999999987653     


Q ss_pred             ccccCCCceeeeEEEee
Q 009614          514 GKKKLPGKRITGFQVVK  530 (531)
Q Consensus       514 ~~kk~~~~~It~l~f~p  530 (531)
                        .+.|...|++++|+|
T Consensus       308 --~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          308 --KQAHSFAITEVTISP  322 (365)
T ss_dssp             --TTSSSSCEEEEEECT
T ss_pred             --cCcccCCEEEEEECC
Confidence              234567899999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=7.6e-26  Score=234.93  Aligned_cols=246  Identities=13%  Similarity=0.244  Sum_probs=186.9

Q ss_pred             ccccceeeeCCC--CeEEeeecCCeEEEEeCCCCccccc------------------cc--------------ccceE-E
Q 009614          236 DRHGSATLKPGD--HELTLGQRMRRVRVHPVKKQSRELS------------------SL--------------YTGQE-F  280 (531)
Q Consensus       236 ~~~~s~~fspdg--~~lasgs~dg~I~vwd~~~~~~~~~------------------~~--------------~~~~~-l  280 (531)
                      ..+.+++|+|++  .++++++.|+.|++|++........                  .+              ..... .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            678889999998  7999999999999999875332100                  00              00012 3


Q ss_pred             cccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC-cccc-------ceecCCCCCeeEEEeecCCcceeeeecccccc
Q 009614          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH-ERLD-------GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI  352 (531)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (531)
                      .+|...|++++|+|++++|++| .||.|++||+.+. ....       .+..+...+.++.|.+....            
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~------------  240 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN------------  240 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT------------
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc------------
Confidence            6899999999999999999998 7999999999843 3333       23344555566666554322            


Q ss_pred             ccccccccCCCceEEEeCCccccccCcceeEeecCCC------------CeeEEEEcCCC-eEEEEeCCCcEEEEECCC-
Q 009614          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS------------EVLDLSWSKNG-FLLSSSADKTVRLWQVGI-  418 (531)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~-  418 (531)
                         ..+.++.++.+.+|+.+........+..+.+|..            .|.+++|+|++ +|++++. +.|++||+++ 
T Consensus       241 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~  316 (447)
T 3dw8_B          241 ---TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME  316 (447)
T ss_dssp             ---EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred             ---EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence               2345667888999998776544444677788876            99999999999 8888888 9999999997 


Q ss_pred             CeEEEEee-cCCc---------------eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC--------------
Q 009614          419 DRCLRVFS-HNNY---------------VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--------------  468 (531)
Q Consensus       419 ~~~l~~~~-h~~~---------------V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~--------------  468 (531)
                      ++++..+. |...               +..++|+| ++.+|++|+.||.|+|||+.+++.+.+..              
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  395 (447)
T 3dw8_B          317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR  395 (447)
T ss_dssp             SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred             ccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence            88887776 4321               33499999 99999999999999999999988775433              


Q ss_pred             -------------------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          469 -------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       469 -------------------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                                         +...|..++|+|++++|++++.++ +++|..+
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                               345688999999999999998776 8888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=5.6e-25  Score=246.25  Aligned_cols=246  Identities=18%  Similarity=0.288  Sum_probs=201.1

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +..|...+.+++|+|++++|++|+.||.|+||++.++.       ....+.+|.+.|++++|+|++++|++++.||+|++
T Consensus        51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  123 (814)
T 3mkq_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (814)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence            44566778889999999999999999999999998543       33467889999999999999999999999999999


Q ss_pred             EEcccC-ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec-CC
Q 009614          311 WKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HS  388 (531)
Q Consensus       311 Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~  388 (531)
                      |++.++ .....+..+...+.++.|.+...               ...+.++.++.+.+|+....    .+...+.. |.
T Consensus       124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------------~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~~  184 (814)
T 3mkq_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDP---------------STFASGCLDRTVKVWSLGQS----TPNFTLTTGQE  184 (814)
T ss_dssp             EEGGGTSEEEEEEECCSSCEEEEEEETTEE---------------EEEEEEETTSEEEEEETTCS----SCSEEEECCCT
T ss_pred             EECCCCceEEEEEcCCCCcEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC----cceeEEecCCC
Confidence            999887 55556666666666766665221               12345667788888887542    23444444 44


Q ss_pred             CCeeEEEEcC--CC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          389 SEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       389 ~~I~~l~~sp--~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ..+.+++|+|  ++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++.+|++++.||.|++||+.+++.+
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            8999999999  77 99999999999999999999998886 899999999999 9999999999999999999998877


Q ss_pred             -EecCCCCceEEEEEccCCCE-EEEEeCCCcEEEEeCCCCe
Q 009614          465 -DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       465 -~~~~~~~~v~~v~~spdg~~-l~sgs~dg~I~iwd~~~~~  503 (531)
                       .+..+...+.+++|+|+|.. +++++.++.+.+|++..+.
T Consensus       264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence             47778889999999999873 2444557779999986543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=3.6e-26  Score=267.89  Aligned_cols=278  Identities=21%  Similarity=0.237  Sum_probs=222.6

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc------------------------------ccccceEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS------------------------------SLYTGQEF  280 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~------------------------------~~~~~~~l  280 (531)
                      +..|...+.+++|+|++.++++++.||.|++|++........                              ........
T Consensus       878 ~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1249)
T 3sfz_A          878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID  957 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred             cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence            445667788899999999999999999999999764211100                              00001112


Q ss_pred             cccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614          281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (531)
Q Consensus       281 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (531)
                      ..+...|.+++|+|+++++++|+.||.|++|++.+++....+..+...+.++.+.++..                ..+++
T Consensus       958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~----------------~l~s~ 1021 (1249)
T 3sfz_A          958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK----------------TLISS 1021 (1249)
T ss_dssp             EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS----------------CEEEE
T ss_pred             EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC----------------EEEEE
Confidence            23456899999999999999999999999999999988887777777788877766542                23456


Q ss_pred             CCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC
Q 009614          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV  439 (531)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~  439 (531)
                      +.++.+.+|+.....     ...+.+|...|.+++|+|++.+++++.|++|++||+.+++++..+. |...|++++|+| 
T Consensus      1022 ~~dg~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~- 1095 (1249)
T 3sfz_A         1022 SEDSVIQVWNWQTGD-----YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS- 1095 (1249)
T ss_dssp             CSSSBEEEEETTTTE-----EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS-
T ss_pred             cCCCEEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC-
Confidence            678888899876533     2345689999999999998899999999999999999999988886 999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee-eeccccc
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGKKK  517 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~-~~~~~kk  517 (531)
                      ++++|++++.||+|++||+.+++.+ .+.+|...|++++|+|+|++|++|+.||.|++||+.+++.+..... .......
T Consensus      1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A         1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp             SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC------
T ss_pred             CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccc
Confidence            9999999999999999999988766 4778999999999999999999999999999999999988765421 1111123


Q ss_pred             CCCceeeeEEEee
Q 009614          518 LPGKRITGFQVVK  530 (531)
Q Consensus       518 ~~~~~It~l~f~p  530 (531)
                      .+...|++++|+|
T Consensus      1176 ~~~~~v~~l~fs~ 1188 (1249)
T 3sfz_A         1176 THGGWVTDVCFSP 1188 (1249)
T ss_dssp             -CCSCCCEEEECT
T ss_pred             ccCceEEEEEECC
Confidence            4667899999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=2.5e-25  Score=231.29  Aligned_cols=237  Identities=19%  Similarity=0.354  Sum_probs=186.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|...+.+++|  ++.++++|+.||.|++||+....       ....+.+|...|.+++|+  +.+|++|+.||.|++
T Consensus       169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~v  237 (435)
T 1p22_A          169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAV  237 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-------EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEE
T ss_pred             EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEE
Confidence            3445566666666  88999999999999999998543       335678999999999997  459999999999999


Q ss_pred             EEcccCccc---cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          311 WKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       311 Wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      ||+.++...   ..+..+...+.++.+                  .....+.++.++.+.+|+....    +.+..+.+|
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~------------------~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~  295 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDF------------------DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGH  295 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEE------------------ETTEEEEEETTSEEEEEETTTC----CEEEEEECC
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEe------------------CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCC
Confidence            999887654   223333333333332                  1223466778889999988763    457888999


Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe----
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----  462 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~----  462 (531)
                      ...|.++.+++ .+|++|+.|++|++||+++++++..+. |...|++++|   ++.+|++|+.||.|++||+.++.    
T Consensus       296 ~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~  371 (435)
T 1p22_A          296 KRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRA  371 (435)
T ss_dssp             SSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred             CCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence            99999999953 399999999999999999999999886 9999999999   56899999999999999997654    


Q ss_pred             -----E-EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          463 -----V-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       463 -----~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                           . ..+..|...|++++|  ++.+|++|+.||.|++||+.++....
T Consensus       372 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred             cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence                 4 457889999999999  78899999999999999998876544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=1.2e-24  Score=217.39  Aligned_cols=234  Identities=12%  Similarity=0.055  Sum_probs=189.5

Q ss_pred             eeeeccccceeeeCCCC-eEEeeecCCeEEEEeC-CCCcccccccccceEEcc--cCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          232 ARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPV-KKQSRELSSLYTGQEFLA--HEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~-~lasgs~dg~I~vwd~-~~~~~~~~~~~~~~~l~~--H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      ..|...+.+++|+|++. ++++|+.||.|++|++ .....        ..+.+  |...|++++|+| +++|++++.|+.
T Consensus        53 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~  123 (342)
T 1yfq_A           53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------QALTNNEANLGICRICKYG-DDKLIAASWDGL  123 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--------EECBSCCCCSCEEEEEEET-TTEEEEEETTSE
T ss_pred             eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--------EeccccCCCCceEEEEeCC-CCEEEEEcCCCe
Confidence            35667788899999999 9999999999999998 65432        45678  999999999999 999999999999


Q ss_pred             EEEEEccc---------CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc-cccc
Q 009614          308 VRVWKVIE---------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLL  377 (531)
Q Consensus       308 I~iWd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  377 (531)
                      |++||+.+         ++.+..+. +...+.++.+.++.                  .+.++.++.+.+|+... ... 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~------------------l~~~~~d~~i~i~d~~~~~~~-  183 (342)
T 1yfq_A          124 IEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR------------------LIVGMNNSQVQWFRLPLCEDD-  183 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE------------------EEEEESTTEEEEEESSCCTTC-
T ss_pred             EEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc------------------EEEEeCCCeEEEEECCccccc-
Confidence            99999987         66555554 44444444443221                  34556677888888765 321 


Q ss_pred             CcceeEeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCC------eEEEEee-cCC---------ceEEEEEeeC
Q 009614          378 EKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGID------RCLRVFS-HNN---------YVTSVAFNPV  439 (531)
Q Consensus       378 ~~~~~~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~------~~l~~~~-h~~---------~V~sv~fsp~  439 (531)
                       ........|...|.+++|+| ++ +|++++.|+.|++|++...      +.+..+. |..         .|++++|+| 
T Consensus       184 -~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-  261 (342)
T 1yfq_A          184 -NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-  261 (342)
T ss_dssp             -CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-
T ss_pred             -cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-
Confidence             12334556888999999999 88 9999999999999999876      6666665 544         999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC-CCceEEEEEccCCCEEEEEeCCCc-EEEEe
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVVD-YTDI-REIVSAVCYCPDGKGGIVGTMTGN-CRFYD  498 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~-~~~v~~v~~spdg~~l~sgs~dg~-I~iwd  498 (531)
                      ++++|++++.||.|++||+.+++.+. +..| ...|++++  |++++|++|+.||. .+.|.
T Consensus       262 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            99999999999999999999998774 6677 89999999  99999999999998 55555

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.7e-26  Score=234.71  Aligned_cols=243  Identities=12%  Similarity=0.082  Sum_probs=168.4

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc--------CCCEEEEEeCCCcEEE
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--------DGQYLASGGEDGTVRV  310 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~Lasgs~Dg~I~i  310 (531)
                      ....+++++.++|+|+.|++|+||+........  ......+.+|.+.|++|+|+|        |+++||||+.|++|+|
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIIT--QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEE--EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccce--eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence            345678888899999999999999988654321  122234689999999999998        8899999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC------------
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE------------  378 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  378 (531)
                      ||+.++.....+..+...+.++.|.+.....               .+.++.++.+.+|+........            
T Consensus       171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~---------------l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          171 WRLTDEGPILAGYPLSSPGISVQFRPSNPNQ---------------LIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             EEEETTEEEEEEEECSSCEEEEEEETTEEEE---------------EEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             EECCCCceeeeecCCCCCcEEEEECCCCCce---------------EEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            9999888777777777777777776654322               2445667777777765432211            


Q ss_pred             ---------cceeEeecCCCCeeEEEEc-CCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceE--------------
Q 009614          379 ---------KPLHEFQGHSSEVLDLSWS-KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT--------------  432 (531)
Q Consensus       379 ---------~~~~~~~~h~~~I~~l~~s-p~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~--------------  432 (531)
                               .......+|...+.++.|+ |++ .|++++.|+++++||+..++....+. |...+.              
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence                     1122345788899999997 677 99999999999999998876655442 322222              


Q ss_pred             ----EEEEeeC-CCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          433 ----SVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       433 ----sv~fsp~-d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                          ...|+|. ++.++++|+.||+|+|||+.+++.+ ....|...|.+++|+|||++||+++.+| +.+|.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                2334442 3346677889999999999988655 4677888999999999999999999766 666654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=8e-25  Score=217.70  Aligned_cols=211  Identities=12%  Similarity=0.187  Sum_probs=170.4

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc----cccceecCCCCCeeEEEeecCCcceeeeeccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID  353 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (531)
                      +.+.+|.+.|++|+|+|++++||+|+.||.|++||+.++.    ....+..+...+.++.|.+....             
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-------------   71 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-------------   71 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-------------
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-------------
Confidence            3578999999999999999999999999999999998763    34445556666666666553111             


Q ss_pred             cccccccCCCceEEEeCCccccccC-----cceeEeecCCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEe
Q 009614          354 KTKSLRKSSDLTCVVLPPKVFRLLE-----KPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF  425 (531)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~l~~~  425 (531)
                       ...+.++.++.+.+|+........     +++..+.+|...|.+++|+|+  + +|++++.|+.|++||+++++.+..+
T Consensus        72 -~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           72 -RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             -SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             -CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence             123456677888888876543211     457778899999999999998  8 9999999999999999887654332


Q ss_pred             --------------ecCCceEEEEEeeC--CCCEEEEEeCCCeEEEEeCCCCeE---EEecCCCCceEEEEEccCC----
Q 009614          426 --------------SHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDG----  482 (531)
Q Consensus       426 --------------~h~~~V~sv~fsp~--d~~~l~sgs~Dg~I~Iwd~~~~~~---~~~~~~~~~v~~v~~spdg----  482 (531)
                                    .|...+.+++|+|.  ++.+|++++.|+.+.+|+...++.   ..+..|...|++++|+|++    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence                          37788999999993  289999999999999998888764   2467899999999999998    


Q ss_pred             CEEEEEeCCCcEEEEeCCCC
Q 009614          483 KGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       483 ~~l~sgs~dg~I~iwd~~~~  502 (531)
                      ++|++|+.||.|++||+..+
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEEEcCCCeEEEEeCCCC
Confidence            89999999999999999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=223.39  Aligned_cols=239  Identities=10%  Similarity=0.129  Sum_probs=180.7

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE--ccCCCEEEEEeCCCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF--SLDGQYLASGGEDGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f--spdg~~Lasgs~Dg~I  308 (531)
                      +..|...+.+++|+|++++|++|+.||.|++|++......        .+.+|...|++++|  +|++++|++++.||.|
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  153 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI--------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL  153 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------EEEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce--------eeccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence            4556778889999999999999999999999999854421        35679999999999  8999999999999999


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      ++||+.+++.+..+..+..   ...+.....                ..+.+..++.+.+|+...........  ...+.
T Consensus       154 ~vwd~~~~~~~~~~~~~~~---~~~~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~  212 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPER---CYCADVIYP----------------MAVVATAERGLIVYQLENQPSEFRRI--ESPLK  212 (368)
T ss_dssp             EEECSSCSSCSEEEECSSC---EEEEEEETT----------------EEEEEEGGGCEEEEECSSSCEEEEEC--CCSCS
T ss_pred             EEEECCCCcEEEEEecCCC---ceEEEecCC----------------eeEEEeCCCcEEEEEeccccchhhhc--ccccc
Confidence            9999999887777665431   222221111                12334455667777665432111111  12234


Q ss_pred             CCeeEEEEcCCC-----eEEEEeCCCcEEEEECCCC---eEEEEee-cCC------------ceEEEEEeeCCCCEEEEE
Q 009614          389 SEVLDLSWSKNG-----FLLSSSADKTVRLWQVGID---RCLRVFS-HNN------------YVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       389 ~~I~~l~~sp~~-----~l~s~s~Dg~V~lwdl~~~---~~l~~~~-h~~------------~V~sv~fsp~d~~~l~sg  447 (531)
                      ..+.++.+.++.     .+++++.|+.|++||++..   ..+..+. |..            .|++++|+| ++++|++|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~  291 (368)
T 3mmy_A          213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATV  291 (368)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEE
T ss_pred             CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEE
Confidence            455666665544     3999999999999999987   4455554 433            799999999 99999999


Q ss_pred             eCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       448 s~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      +.||.|+|||+.+++.+ .+..|...|++++|+|+|++|++|+.|+..+.|++
T Consensus       292 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          292 GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             ccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999877 47788999999999999999999999886555554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-25  Score=231.18  Aligned_cols=244  Identities=9%  Similarity=0.154  Sum_probs=188.7

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCC---Ccccc-cccccceEEc--c--cCCCEEEEE--EccCCCEEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK---QSREL-SSLYTGQEFL--A--HEGSILTMK--FSLDGQYLASG  302 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~---~~~~~-~~~~~~~~l~--~--H~~~I~~l~--fspdg~~Lasg  302 (531)
                      .|...+.+++|+|++.+|++|+.||.|++|++..   ..... ........+.  .  |...+.++.  +++++.+|++|
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            3667888999999999999999999999999852   21110 0001111111  2  567788888  56889999999


Q ss_pred             eCCCcEEEEEcccCccccceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          303 GEDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       303 s~Dg~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      +.||.|++||+.+++.+..+..  +...+.++.+.++.                ...+.++.++.+.+|+.+.    .++
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~----------------~~l~s~~~dg~i~iwd~~~----~~~  248 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC----------------CVLILGTTRGIIDIWDIRF----NVL  248 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS----------------CEEEEEETTSCEEEEETTT----TEE
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC----------------CEEEEEcCCCeEEEEEcCC----ccE
Confidence            9999999999999988887776  55566666665442                2234567788899998875    344


Q ss_pred             eeEee-cCCCCeeEEEEcC----CC-eEEEEeCCCcEEEEECCCCeEEEEee---------------------------c
Q 009614          381 LHEFQ-GHSSEVLDLSWSK----NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------------------H  427 (531)
Q Consensus       381 ~~~~~-~h~~~I~~l~~sp----~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---------------------------h  427 (531)
                      +..+. .|...|.+++|+|    ++ +|++++.|++|++||+++++++..+.                           |
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            56665 7888999997765    46 99999999999999999999888775                           5


Q ss_pred             CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-------------------------------------CC
Q 009614          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-------------------------------------DI  469 (531)
Q Consensus       428 ~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~-------------------------------------~~  469 (531)
                      ...|++++|+  ++++|++|+.|+.|++||+.+++... +.                                     .|
T Consensus       329 ~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  406 (437)
T 3gre_A          329 LNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH  406 (437)
T ss_dssp             GGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred             CCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence            5668899998  46899999999999999998865332 22                                     28


Q ss_pred             CCceEEEEEccC--CCEEEEEeCCCcEEEEe
Q 009614          470 REIVSAVCYCPD--GKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       470 ~~~v~~v~~spd--g~~l~sgs~dg~I~iwd  498 (531)
                      ...|++++|+++  +.+|++|+.||.|+||+
T Consensus       407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            899999999998  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=7.8e-24  Score=220.55  Aligned_cols=253  Identities=21%  Similarity=0.342  Sum_probs=197.8

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +.+|...+.+++|+  +.++++|+.||.|++|++.+..       ....+.+|...|.++.|+  +++|++|+.||+|++
T Consensus       155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~  223 (445)
T 2ovr_B          155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRV  223 (445)
T ss_dssp             CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEE
Confidence            34566677777776  6699999999999999987543       334678899999999995  568999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEee------cCCcceeeeecccccc----------------ccccccccCCCceEEE
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTI------NHLSQLIPIDVDKEKI----------------DKTKSLRKSSDLTCVV  368 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~  368 (531)
                      ||+.+++.+..+..+...+.++.+..      .....+..++......                .....+.++.++.+.+
T Consensus       224 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i  303 (445)
T 2ovr_B          224 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  303 (445)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             EECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEE
Confidence            99999888888877777666665511      0111111222111110                1123355667888888


Q ss_pred             eCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEE
Q 009614          369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYF  444 (531)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l  444 (531)
                      |+...    .+.+..+.+|...+.++.++++ +|++++.|+.|++||+++++++..+.    |...|++++|+   +++|
T Consensus       304 ~d~~~----~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l  375 (445)
T 2ovr_B          304 WDVET----GNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFV  375 (445)
T ss_dssp             EETTT----CCEEEEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEE
T ss_pred             EECCC----CCEEEEEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEE
Confidence            88765    3457788899999999988643 99999999999999999999998885    88899999995   4899


Q ss_pred             EEEeCCCeEEEEeCCCCeEEE-e-----cCCCCceEEEEEccCCCEEEEEeCCCc----EEEEeCCCC
Q 009614          445 ISGSIDGKVRIWEVRRCQVVD-Y-----TDIREIVSAVCYCPDGKGGIVGTMTGN----CRFYDIKDN  502 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~~~~~-~-----~~~~~~v~~v~~spdg~~l~sgs~dg~----I~iwd~~~~  502 (531)
                      ++|+.||.|++||+.+++.+. +     ..+...|++++|+|++.++++|+.||+    |.+||+...
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999999999998774 3     367889999999999999999999998    999998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=7.3e-25  Score=215.77  Aligned_cols=186  Identities=12%  Similarity=0.122  Sum_probs=134.4

Q ss_pred             CCCeEEeee--cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          246 GDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       246 dg~~lasgs--~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      +++++.++.  .|+.|++|++.....      ....+.+|...++.++|++   ++.+||+|+.|++|+|||+.+++++.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~  217 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGG------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK  217 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSC------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCc------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEE
Confidence            444444422  488888888753221      2234668999999999999   77999999999999999999998766


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG  400 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~  400 (531)
                      .+..+..                                                           |...+.+++|+|+|
T Consensus       218 tL~g~~~-----------------------------------------------------------~v~~v~~vafSpdG  238 (356)
T 2w18_A          218 KMHIDDS-----------------------------------------------------------YQASVCHKAYSEMG  238 (356)
T ss_dssp             EEECCC--------------------------------------------------------------CCCEEEEEEETT
T ss_pred             EEcCCCc-----------------------------------------------------------ceeeeEEEEECCCC
Confidence            5532111                                                           11234455566655


Q ss_pred             -e------------EEEEeCCCcEEEEECCCCeEEEEe------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          401 -F------------LLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       401 -~------------l~s~s~Dg~V~lwdl~~~~~l~~~------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                       +            +++|+.|++|++||..+++++.++      .|...+.+.  +. ++.++++|+.|++|+|||+.++
T Consensus       239 ~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~-sg~~lASgS~DgTIkIWDl~tG  315 (356)
T 2w18_A          239 LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DV-KDHCAAAILTSGTIAIWDLLLG  315 (356)
T ss_dssp             EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EE-ETTEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--cc-CCCEEEEEcCCCcEEEEECCCC
Confidence             3            477899999999999999988766      244444433  33 4789999999999999999999


Q ss_pred             eEEE-ecCCCCceE-EEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          462 QVVD-YTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       462 ~~~~-~~~~~~~v~-~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      +++. +.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9885 667776655 6899999999999999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.2e-25  Score=223.05  Aligned_cols=201  Identities=12%  Similarity=0.067  Sum_probs=160.4

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      ..+.+++.++++|+.||.|++||+..+...       ..+.  ...|.++.|+|+   +++++.|++|++|+......  
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~--  107 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT--  107 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE--
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceE--
Confidence            355678899999999999999999865432       1222  467888899988   99999999999999754211  


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEEEEcC-
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSK-  398 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~sp-  398 (531)
                                                                     +|+...    .+.+..+ .+|.+.|.+++|+| 
T Consensus       108 -----------------------------------------------~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~  136 (343)
T 3lrv_A          108 -----------------------------------------------ILDSKT----NKVLREIEVDSANEIIYMYGHNE  136 (343)
T ss_dssp             -----------------------------------------------EEETTT----CCEEEEEECCCSSCEEEEECCC-
T ss_pred             -----------------------------------------------EeecCC----cceeEEeecCCCCCEEEEEcCCC
Confidence                                                           011000    0112222 36778999999999 


Q ss_pred             -CC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecC-CCC
Q 009614          399 -NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD-IRE  471 (531)
Q Consensus       399 -~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~-~~~  471 (531)
                       ++ +|++++.|++|++||+++++++..+.  |...|++++|+| ++.+|++|+.||.|+|||+++++.+  .+.. |..
T Consensus       137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~  215 (343)
T 3lrv_A          137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA  215 (343)
T ss_dssp             --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence             88 99999999999999999999877663  566899999999 9999999999999999999998765  5666 899


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      .|++++|+|+|.+|++++ ++.|++||+++++.+..+
T Consensus       216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence            999999999999999999 559999999988765443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-24  Score=226.65  Aligned_cols=239  Identities=12%  Similarity=0.028  Sum_probs=182.8

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc----------------------ccccccceEEc-ccCCCEEEEE
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE----------------------LSSLYTGQEFL-AHEGSILTMK  291 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~----------------------~~~~~~~~~l~-~H~~~I~~l~  291 (531)
                      .+.|.+++|+|||+++|+++.|++|+  +.......                      +........+. +|...|++++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence            36778899999999999999999996  43222100                      00011111222 5688999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcccCccccceecCCC-----CCeeEEEeecCCcceeeeeccccccccccccccCCCceE
Q 009614          292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (531)
Q Consensus       292 fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (531)
                      |||+|++||+++.||+|+|||..+  ++..+. +..     .+.++.|+++..                ....++.++.+
T Consensus        93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~----------------~LAsgs~DGtV  153 (588)
T 2j04_A           93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES----------------SIVVGNEDGEL  153 (588)
T ss_dssp             ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS----------------CEEEEETTSEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC----------------EEEEEcCCCEE
Confidence            999999999999999999999644  333333 222     245555555432                33556778999


Q ss_pred             EEeCCccccccCc---ceeEe----ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE---EEEe--ecCCceEEE
Q 009614          367 VVLPPKVFRLLEK---PLHEF----QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC---LRVF--SHNNYVTSV  434 (531)
Q Consensus       367 ~~~~~~~~~~~~~---~~~~~----~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~---l~~~--~h~~~V~sv  434 (531)
                      .+|+.....+.+.   .+.++    .+|...|.+++|+|+| +++++.|++|++||+.++..   .+++  .|...|.++
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence            9999876433111   24565    6688899999999999 99999999999999988774   3455  377899999


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEE--ccCCCEEEEEeCCCcEEEEeCC
Q 009614          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY--CPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~--spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +|+   +++||+++ +++|++||+.+++.. ...+|...|+.++|  +||+..|++++.||+ ++|...
T Consensus       233 aFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          233 KIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            998   48899887 699999999999884 44489999999999  999999999999999 999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=8.3e-24  Score=219.71  Aligned_cols=237  Identities=16%  Similarity=0.208  Sum_probs=179.7

Q ss_pred             eEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccc----------CccccceecCCCCCeeEEEeecCCcceeeee
Q 009614          278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE----------HERLDGFDVQDTDPSCLYFTINHLSQLIPID  346 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (531)
                      ....+|.+.|++++|+|+ +.+||+++.||.|++|++.+          ......+..+...+.++.|.+....      
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~------  195 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG------  195 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT------
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC------
Confidence            345689999999999997 78999999999999999987          4455555566666666666554332      


Q ss_pred             ccccccccccccccCCCceEEEeCCcccccc---CcceeEeecCCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCC--
Q 009614          347 VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGID--  419 (531)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~--  419 (531)
                               ..+.++.++.+.+|+.......   ..+...+.+|...|.+++|+|+ + +|++++.|+.|++||++++  
T Consensus       196 ---------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          196 ---------YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             ---------EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             ---------eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence                     2355677888999987652221   1235667789999999999994 4 8999999999999999987  


Q ss_pred             -eEEEEe-ecCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCC-e-EEEecCCCCceEEEEEccCCC-EEEEEeCCCc
Q 009614          420 -RCLRVF-SHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRC-Q-VVDYTDIREIVSAVCYCPDGK-GGIVGTMTGN  493 (531)
Q Consensus       420 -~~l~~~-~h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~-~-~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~  493 (531)
                       +.+..+ .|...|++|+|+| ++. +|++|+.||.|+|||+++. + +..+..|...|++++|+|+++ +|++++.||.
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence             456666 5999999999999 554 7999999999999999983 3 345778999999999999995 6899999999


Q ss_pred             EEEEeCCCCeEEEEee------eeecccccCCCceeeeEEEee
Q 009614          494 CRFYDIKDNQLYQQNQ------ICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       494 I~iwd~~~~~l~~~~~------~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |+|||+......+...      ..+......+...|+.++|+|
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  388 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  388 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence            9999998732111000      000011233456899999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-24  Score=216.35  Aligned_cols=203  Identities=12%  Similarity=0.083  Sum_probs=156.4

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc--ccccccceEE-cccCCCEEEEEEcc--CCCEEEEEeCCCcEEE
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE--LSSLYTGQEF-LAHEGSILTMKFSL--DGQYLASGGEDGTVRV  310 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~--~~~~~~~~~l-~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i  310 (531)
                      ..+.++.++|+   +++|+.|++|++|+.......  .......+.+ .+|.+.|.+++|+|  ++++|++|+.||+|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45667888888   999999999999988743211  1111111122 36778999999999  9999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.+++.....                                                             ...|...
T Consensus       154 wd~~~~~~~~~~-------------------------------------------------------------~~~~~~~  172 (343)
T 3lrv_A          154 QSYEDDSQYIVH-------------------------------------------------------------SAKSDVE  172 (343)
T ss_dssp             EESSSSCEEEEE-------------------------------------------------------------CCCSSCC
T ss_pred             EECCCCcEEEEE-------------------------------------------------------------ecCCCCc
Confidence            999876531110                                                             1224557


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE-EEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-  465 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l-~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-  465 (531)
                      |.+++|+|++ +|++|+.|+.|++||+++++.+ ..+.  |...|++++|+| ++.+|++++ |+.|+|||+++.+.+. 
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCccee
Confidence            9999999999 9999999999999999999877 5563  899999999999 999999999 5599999999876542 


Q ss_pred             ec---CCCCce--EEEEEccCCCEEEEEeC-CCcEEEEeCCCCeE
Q 009614          466 YT---DIREIV--SAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQL  504 (531)
Q Consensus       466 ~~---~~~~~v--~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l  504 (531)
                      +.   .+...+  .+++|+|+|++|++++. |+.|+||++.....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          251 YPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             SCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            21   122333  46999999999999998 99999999966543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=8.4e-24  Score=218.87  Aligned_cols=262  Identities=12%  Similarity=0.113  Sum_probs=205.9

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+.+++|+|++.++++++.++.|++||..++....  ......+.+|.+.|++++|+++++++++++.|+.|++||+.++
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR--LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            34578999988888889899999999998655331  1111135689999999999999999999999999999999998


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      +....+..+...+.++.+.++....+               +....++.+.+|+....    +.+..+.. ...+.+++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~i~~~d~~~~----~~~~~~~~-~~~~~~~~~  261 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVY---------------CSNWISEDISVIDRKTK----LEIRKTDK-IGLPRGLLL  261 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEE---------------EEETTTTEEEEEETTTT----EEEEECCC-CSEEEEEEE
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEE---------------EEecCCCcEEEEECCCC----cEEEEecC-CCCceEEEE
Confidence            88777776666666666655432211               22335667888887643    23444444 345999999


Q ss_pred             cCCC-eEEEEe--------CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          397 SKNG-FLLSSS--------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       397 sp~~-~l~s~s--------~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      +|++ .|++++        .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++..
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence            9999 787777        58899999999999998888888999999999 775 557778999999999999998876


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeC---------------CCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTM---------------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~---------------dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ..+...+.+++|+|+|++|++++.               ||.|++||+.+++++..+..         ...+++++|+|
T Consensus       341 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~  410 (433)
T 3bws_A          341 IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------GNQPTGLDVSP  410 (433)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------SSSEEEEEECT
T ss_pred             ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------CCCCceEEEcC
Confidence            678888999999999999988877               57999999999998776542         24567787775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=5.3e-24  Score=217.48  Aligned_cols=222  Identities=18%  Similarity=0.312  Sum_probs=174.5

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcccCcccccee-----------
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFD-----------  323 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~-----------  323 (531)
                      ++.+++|++....       ....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+.           
T Consensus        22 ~~~~~v~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           22 ESTRRVLGLELNK-------DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHHHTEEECT-------TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             cCcceeeccccCc-------ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence            4556677665322       2245678999999999999 99999999999999999999887665543           


Q ss_pred             --cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--
Q 009614          324 --VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--  399 (531)
Q Consensus       324 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--  399 (531)
                        .+...+.++.|.+....               ..+.++.++.+.+|+.....    .+..+ .+...+.++.++|.  
T Consensus        95 ~~~~~~~v~~~~~~~~~~~---------------~l~s~~~d~~i~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~~  154 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTG---------------MFTSSSFDKTLKVWDTNTLQ----TADVF-NFEETVYSHHMSPVST  154 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTT---------------CEEEEETTSEEEEEETTTTE----EEEEE-ECSSCEEEEEECSSCS
T ss_pred             cccCCCcEEEEEEccCCCc---------------EEEEEeCCCeEEEeeCCCCc----cceec-cCCCceeeeEeecCCC
Confidence              24444555555442222               23455677889999876533    23333 37788999999984  


Q ss_pred             -C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeE-E-Ee-------
Q 009614          400 -G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQV-V-DY-------  466 (531)
Q Consensus       400 -~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~-~-~~-------  466 (531)
                       + ++++++.|+.|++||+++++.+..+. |...|++++|+| ++. +|++|+.||.|++||++++.. + .+       
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  233 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK  233 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence             3 89999999999999999999888886 999999999999 666 699999999999999987641 1 22       


Q ss_pred             --------cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          467 --------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       467 --------~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                              ..|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred             ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence                    567889999999999999999999999999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.4e-24  Score=236.26  Aligned_cols=234  Identities=17%  Similarity=0.194  Sum_probs=182.6

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc--cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      ..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.  ++.....+..+...+.++.|.+.....              
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~--------------   68 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT--------------   68 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS--------------
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC--------------
Confidence            3578999999999999999999999999999999998  455666666777777777776553222              


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC--C-eEEEEeCCCcEEEEECCCCeE---EEEeecCC
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNN  429 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~---l~~~~h~~  429 (531)
                      ..++++.++.+.+|+.....  ...+..+.+|...|.+++|+|+  + .|++|+.||.|++||++++..   .....|..
T Consensus        69 ~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           69 ILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             EEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred             EEEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence            23456678889999866532  1256778889999999999998  7 999999999999999988732   23335899


Q ss_pred             ceEEEEEeeC------------CCCEEEEEeCCCeEEEEeCCCC----eEE-EecCCCCceEEEEEccC---CCEEEEEe
Q 009614          430 YVTSVAFNPV------------DDNYFISGSIDGKVRIWEVRRC----QVV-DYTDIREIVSAVCYCPD---GKGGIVGT  489 (531)
Q Consensus       430 ~V~sv~fsp~------------d~~~l~sgs~Dg~I~Iwd~~~~----~~~-~~~~~~~~v~~v~~spd---g~~l~sgs  489 (531)
                      .|++++|+|.            ++.+|++|+.||.|++||++++    .+. .+.+|...|++++|+|+   +++|++|+
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            9999999994            4889999999999999999876    333 47789999999999999   99999999


Q ss_pred             CCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          490 MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       490 ~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .||.|++||+.+++.......   .....+...|++++|+|
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~v~~l~~sp  264 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTL---LKEEKFPDVLWRASWSL  264 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCB---SSSSCCSSCCCCEEECT
T ss_pred             cCCEEEEecCCCCCCcceeEE---eccCCCCCceEEEEEcC
Confidence            999999999998753221111   11234567889999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.9e-23  Score=215.06  Aligned_cols=246  Identities=11%  Similarity=0.038  Sum_probs=188.3

Q ss_pred             ceeeeccccceeeeCCCCeE-EeeecCCeEEEEeCC--CCcccccccccceEEc--ccCCCEEEEEEccCCCEEEEEeCC
Q 009614          231 MARIIDRHGSATLKPGDHEL-TLGQRMRRVRVHPVK--KQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~l-asgs~dg~I~vwd~~--~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      ...+...+.+++|+|++++| ++|+.||.|+||++.  ....       .+.+.  .|...|++++|+|++++|++|+.|
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  170 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-------LKLRKRFCFSKRPNAISIAEDDTTVIIADKF  170 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-------EEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-------eeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence            34556678899999999996 889999999999987  3321       12343  677899999999999999999999


Q ss_pred             CcEEEEEcccCcccc----ceecCCCCCeeEEEeecC-CcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          306 GTVRVWKVIEHERLD----GFDVQDTDPSCLYFTINH-LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       306 g~I~iWd~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      |.|++|++.++....    .+..+...+.++.|.++. ..              ...+.++.++.+.+|+....    +.
T Consensus       171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~--------------~~l~s~~~d~~i~vwd~~~~----~~  232 (450)
T 2vdu_B          171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH--------------QFIITSDRDEHIKISHYPQC----FI  232 (450)
T ss_dssp             SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC--------------EEEEEEETTSCEEEEEESCT----TC
T ss_pred             CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC--------------cEEEEEcCCCcEEEEECCCC----ce
Confidence            999999998877554    566666777777777651 11              12244566778888886542    33


Q ss_pred             eeE-eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec--------------------------CCceE
Q 009614          381 LHE-FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH--------------------------NNYVT  432 (531)
Q Consensus       381 ~~~-~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h--------------------------~~~V~  432 (531)
                      +.. +.+|...|.+++|+ ++ +|++++.|++|++||+.+++++..+..                          ...|.
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            444 56899999999999 88 999999999999999999998888751                          24689


Q ss_pred             EEEEeeCCCCEEEEEe-CCCeEEEEeC--CCC---eEEE-ecCCCCceEEEEEccCCCEEEEEeC------CCcEEEEeC
Q 009614          433 SVAFNPVDDNYFISGS-IDGKVRIWEV--RRC---QVVD-YTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDI  499 (531)
Q Consensus       433 sv~fsp~d~~~l~sgs-~Dg~I~Iwd~--~~~---~~~~-~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~  499 (531)
                      +|+|+| ++++|++++ .|+.|+||++  .++   +.+. +..+ ..|.+++|+|++.++++++.      +..|.+|.+
T Consensus       312 ~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          312 KIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             EEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             EEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence            999999 999999998 8999999999  554   4443 4444 88999999996544444343      455788876


Q ss_pred             C--CCeE
Q 009614          500 K--DNQL  504 (531)
Q Consensus       500 ~--~~~l  504 (531)
                      .  ++++
T Consensus       390 ~~~~~~~  396 (450)
T 2vdu_B          390 NLNENSF  396 (450)
T ss_dssp             ETTTTEE
T ss_pred             EcCCCeE
Confidence            4  4554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=2.7e-22  Score=204.63  Aligned_cols=244  Identities=11%  Similarity=0.095  Sum_probs=188.8

Q ss_pred             cccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcc
Q 009614          237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVI  314 (531)
Q Consensus       237 ~~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~  314 (531)
                      .+.+++|+|+++++ ++++.++.|++||......       .+.+..|. .|.+++|+|++++|+.+ +.|+.|++||+.
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            35678999999987 6777999999999875432       23344444 89999999999988654 567999999999


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      +++....+..+. .+..+.+.++....               .+....++.+.+|+....    +.+..+..| ..+.++
T Consensus       105 ~~~~~~~~~~~~-~~~~~~~s~dg~~l---------------~~~~~~~~~v~~~d~~~~----~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A          105 SNTVAGTVKTGK-SPLGLALSPDGKKL---------------YVTNNGDKTVSVINTVTK----AVINTVSVG-RSPKGI  163 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEE---------------EEEETTTTEEEEEETTTT----EEEEEEECC-SSEEEE
T ss_pred             CCeEEEEEeCCC-CcceEEECCCCCEE---------------EEEeCCCCEEEEEECCCC----cEEEEEecC-CCcceE
Confidence            988766665432 23444444332211               123455678888887653    334455544 457999


Q ss_pred             EEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe---CCCeEEEEeCCCCeEEEecCC
Q 009614          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDI  469 (531)
Q Consensus       395 ~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~~~~~~~~~~~  469 (531)
                      +|+|++ +| ++++.++.|++||+++++++..+.+...+.+++|+| ++++|++++   .++.|++||+.+++.+.....
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            999999 55 677889999999999999999999888999999999 898888887   689999999999988865555


Q ss_pred             CCceEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          470 REIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ...+.+++|+|+|++| ++++.|+.|++||+.+++++..+..
T Consensus       243 ~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          243 GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            5678999999999987 5668899999999999999887654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=2.6e-22  Score=204.76  Aligned_cols=244  Identities=13%  Similarity=0.161  Sum_probs=188.8

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceecCC
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQD  326 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (531)
                      .++++++.++.|++||......       .+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++....+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            4678899999999999985432       23455564 58999999999977 677799999999999998877776544


Q ss_pred             CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eE-EE
Q 009614          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LS  404 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l-~s  404 (531)
                       .+.++.+.++....+               +.+..++.+.+|+.....    .+..+. +...+.+++|+|++ .| ++
T Consensus        75 -~v~~~~~spdg~~l~---------------~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~  133 (391)
T 1l0q_A           75 -SPQGVAVSPDGKQVY---------------VTNMASSTLSVIDTTSNT----VAGTVK-TGKSPLGLALSPDGKKLYVT  133 (391)
T ss_dssp             -SEEEEEECTTSSEEE---------------EEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTSSEEEEE
T ss_pred             -CccceEECCCCCEEE---------------EEECCCCEEEEEECCCCe----EEEEEe-CCCCcceEEECCCCCEEEEE
Confidence             455555554432111               223445778888776532    344444 34578999999998 55 78


Q ss_pred             EeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEE-EEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC
Q 009614          405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (531)
Q Consensus       405 ~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l-~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~  483 (531)
                      ++.++.|++||+.+++.+..+.....+.+++|+| +++++ ++++.++.|++||+.+++.+....+...+.+++|+|+|+
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT  212 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred             eCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence            8889999999999999999988777889999999 88776 677889999999999999887777788899999999999


Q ss_pred             EEEEEe---CCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          484 GGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       484 ~l~sgs---~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +|++++   .++.|++||+.+++.+..+...         ..+.+++|+|
T Consensus       213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~  253 (391)
T 1l0q_A          213 KAYVTNVDKYFNTVSMIDTGTNKITARIPVG---------PDPAGIAVTP  253 (391)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEEEEECC---------SSEEEEEECT
T ss_pred             EEEEEecCcCCCcEEEEECCCCeEEEEEecC---------CCccEEEEcc
Confidence            999988   6899999999999887655432         2356666654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=9.4e-23  Score=213.21  Aligned_cols=241  Identities=20%  Similarity=0.217  Sum_probs=194.9

Q ss_pred             ceeeeccccceeee--CCCCeEEeeecCCeEEEEeCCCCccccc----------------ccccceEEcccCCCEEEEEE
Q 009614          231 MARIIDRHGSATLK--PGDHELTLGQRMRRVRVHPVKKQSRELS----------------SLYTGQEFLAHEGSILTMKF  292 (531)
Q Consensus       231 ~~~~~~~~~s~~fs--pdg~~lasgs~dg~I~vwd~~~~~~~~~----------------~~~~~~~l~~H~~~I~~l~f  292 (531)
                      +..|...+.+++|+  +++.++++|+.||.|++|++........                .......+.+|...|.++  
T Consensus       199 ~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--  276 (464)
T 3v7d_B          199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--  276 (464)
T ss_dssp             ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--
T ss_pred             ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--
Confidence            44566778888888  6889999999999999999986543211                111244678999999987  


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614          293 SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (531)
Q Consensus       293 spdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (531)
                      ++++++|++|+.||.|++||+.+++.+..+..+...+.++.+.++..                ..+.++.++.+.+|+..
T Consensus       277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK----------------RCISASMDTTIRIWDLE  340 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT----------------EEEEEETTSCEEEEETT
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC----------------EEEEEeCCCcEEEEECC
Confidence            56789999999999999999999998888877777777776665432                23456778889999876


Q ss_pred             cccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          373 VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      .    .+++..+.+|...|.+++|++ .+|++++.|++|++||+.++.....+.+...+..++|+| ++.++++|+ ||.
T Consensus       341 ~----~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~  413 (464)
T 3v7d_B          341 N----GELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV-SDNILVSGS-ENQ  413 (464)
T ss_dssp             T----TEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEE-CSSEEEEEE-TTE
T ss_pred             C----CcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEe-CCCEEEEec-CCe
Confidence            5    356788899999999999984 399999999999999999998888888888999999999 999999998 899


Q ss_pred             EEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          453 VRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       453 I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw  497 (531)
                      |+|||+.+++++.  ...+...|++++|+ +..++++++.+|.+.+|
T Consensus       414 i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          414 FNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             EEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9999999999885  57788999999997 34455556667765544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=2e-22  Score=208.50  Aligned_cols=247  Identities=9%  Similarity=0.074  Sum_probs=189.5

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCcEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVW  311 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iW  311 (531)
                      .|...+.+++|+|++.++++++.++.|++|+.....       ....+..|...+.+++|+|++++|++ ++.|+.|++|
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            445567788999999999999999999999987533       22456689999999999999998854 4579999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      |+.+++....+.... .+..+.+.++... ++.........       ...++.+.+|+.....    .+. ...|...+
T Consensus       240 d~~~~~~~~~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~~-------~~~dg~i~~~d~~~~~----~~~-~~~~~~~~  305 (433)
T 3bws_A          240 DRKTKLEIRKTDKIG-LPRGLLLSKDGKE-LYIAQFSASNQ-------ESGGGRLGIYSMDKEK----LID-TIGPPGNK  305 (433)
T ss_dssp             ETTTTEEEEECCCCS-EEEEEEECTTSSE-EEEEEEESCTT-------CSCCEEEEEEETTTTE----EEE-EEEEEECE
T ss_pred             ECCCCcEEEEecCCC-CceEEEEcCCCCE-EEEEECCCCcc-------ccCCCeEEEEECCCCc----EEe-eccCCCCc
Confidence            999888766655432 2344444443322 22211111110       0257788888876532    222 23456689


Q ss_pred             eEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC---------------CCeEE
Q 009614          392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---------------DGKVR  454 (531)
Q Consensus       392 ~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~---------------Dg~I~  454 (531)
                      .+++|+|++  ++++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++.               ||.|+
T Consensus       306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~  384 (433)
T 3bws_A          306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVY  384 (433)
T ss_dssp             EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEE
Confidence            999999998  55677899999999999999999999999999999999 8998888876               57999


Q ss_pred             EEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 009614          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKD  501 (531)
Q Consensus       455 Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~  501 (531)
                      +||+.+++.+........+.+++|+|+|++|++++. |+.|++|++..
T Consensus       385 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          385 VIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            999999998876556778999999999999998875 99999999863

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-23  Score=220.13  Aligned_cols=222  Identities=8%  Similarity=0.041  Sum_probs=164.5

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC-----CEEEEEEccCCCEEEEEeCCCcEE
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+.+++|+|+|.+||+++.||.|+||+...         ....+. |..     .|.+++|||||++||+|+.||+|+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            46788899999999999999999999999543         222344 554     599999999999999999999999


Q ss_pred             EEEcccCcc-------ccce----ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          310 VWKVIEHER-------LDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       310 iWd~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      |||+.++..       +..+    ..+...+.++.|.++.                  .+.++.|..+.+|+....... 
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg------------------Laass~D~tVrlWd~~~~~~~-  215 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV------------------LVAALSNNSVFSMTVSASSHQ-  215 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE------------------EEEEETTCCEEEECCCSSSSC-
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc------------------EEEEeCCCeEEEEECCCCccc-
Confidence            999988753       3333    2233455555555433                  234566788999987653321 


Q ss_pred             cceeEe-ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeE-EEEeecCCceEEEEE--eeCCCCEEEEEeCCCeEE
Q 009614          379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC-LRVFSHNNYVTSVAF--NPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       379 ~~~~~~-~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~-l~~~~h~~~V~sv~f--sp~d~~~l~sgs~Dg~I~  454 (531)
                      ...+++ .+|...|.+++|+ ++.|++++ +++|++||+.+++. ...+.|...|..|+|  +| ++..+++++.||+ +
T Consensus       216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-k  291 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-K  291 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-E
T ss_pred             cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-E
Confidence            123456 4788999999999 44888887 69999999999888 445589999999999  99 9999999999999 9


Q ss_pred             EEeCCCCe-----------------------EEEecCCCCceEEEEEccCCCEEEEEe
Q 009614          455 IWEVRRCQ-----------------------VVDYTDIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       455 Iwd~~~~~-----------------------~~~~~~~~~~v~~v~~spdg~~l~sgs  489 (531)
                      +|....-.                       ......+...|++++|+|||+.+|+++
T Consensus       292 lw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          292 VLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             EEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             EEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence            99875211                       000011122467777777777777765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=2.9e-22  Score=202.72  Aligned_cols=201  Identities=13%  Similarity=0.137  Sum_probs=135.3

Q ss_pred             EEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614          279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      .+.+|...|++++|+|||++||+|+.|+ ++||++.+++........  ....+.+.+.....               .+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~   75 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYV---------------AF   75 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEE---------------EE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEE---------------EE
Confidence            4578999999999999999999998776 789998877654433222  23333332221110               11


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC------------------------------------CeE
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN------------------------------------GFL  402 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~------------------------------------~~l  402 (531)
                      .++.++.+.+|+.....    .+..+. |...|.+++++++                                    .++
T Consensus        76 ~~~~d~~v~iWd~~~~~----~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~l  150 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQ----DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLL  150 (355)
T ss_dssp             ECSSTTEEEEEETTTTE----EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEE
T ss_pred             EECCccEEEEEECCCCc----EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEE
Confidence            22233344444433211    112221 2223333333322                                    334


Q ss_pred             EE--EeCCCcEEEEECCCCe----------------EEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCe-EEEEeCCCCe
Q 009614          403 LS--SSADKTVRLWQVGIDR----------------CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQ  462 (531)
Q Consensus       403 ~s--~s~Dg~V~lwdl~~~~----------------~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~-I~Iwd~~~~~  462 (531)
                      +.  |+.||.|++||+.++.                ++..+ .|...|++++|+| ++++|++|+.|++ |+|||+.+++
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Confidence            43  5789999999998765                14445 4999999999999 9999999999998 9999999998


Q ss_pred             EEE-ec-C-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          463 VVD-YT-D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       463 ~~~-~~-~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      .+. +. + |...|++++|+|+|++|++++.||+|+|||+..+.
T Consensus       230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            875 44 4 89999999999999999999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.90  E-value=7.7e-22  Score=194.65  Aligned_cols=209  Identities=19%  Similarity=0.194  Sum_probs=157.4

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----------------------------------ccccceE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SLYTGQE  279 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----------------------------------~~~~~~~  279 (531)
                      |...|.+++|+|+++++|+|+.||.|++|++.++.....                                  .......
T Consensus        66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence            345677899999999999999999999999986543110                                  0112235


Q ss_pred             EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccce----ecCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      +.+|...+..+.|++++++|++++.||+|++||+.+++.....    ..+...+..+.+.+....             ..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~~  212 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-------------VL  212 (318)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT-------------EE
T ss_pred             EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc-------------EE
Confidence            6789999999999999999999999999999999887643221    122222233333322221             12


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEE--eCCCcEEEEECCCCeEEEEee-cCCce
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS--SADKTVRLWQVGIDRCLRVFS-HNNYV  431 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~--s~Dg~V~lwdl~~~~~l~~~~-h~~~V  431 (531)
                      ....++.++.+.+|+.....     ......|...+..+.|+|.+ .++++  +.|+.|++||+++++++..+. |...|
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V  287 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGA-----CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV  287 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCC-----EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEecCCCCEEEEEeccccc-----ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            22345667778888765532     33445677889999999988 55554  479999999999999999996 99999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      ++|+|+| ++++|++|+.||+|+|||+...
T Consensus       288 ~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          288 LSLTMSP-DGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence            9999999 9999999999999999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=8.8e-22  Score=203.64  Aligned_cols=212  Identities=20%  Similarity=0.249  Sum_probs=161.5

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----------------------------------ccccceE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----------------------------------SLYTGQE  279 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----------------------------------~~~~~~~  279 (531)
                      |.+.|.+++|+|+|++||+|+.||.|+||++........                                  .......
T Consensus       146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEE
Confidence            445678899999999999999999999999876542110                                  0112245


Q ss_pred             EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc----cceecCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      +.+|...+..+.|+|++++|++++.|+.|++|++.+++..    .....+...+.++.+.+.....+             
T Consensus       226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l-------------  292 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL-------------  292 (420)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE-------------
T ss_pred             ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE-------------
Confidence            7789999999999999999999999999999999876532    22333344444455544433322             


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe--CCCcEEEEECCCCeEEEEee-cCCce
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYV  431 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s--~Dg~V~lwdl~~~~~l~~~~-h~~~V  431 (531)
                      ....++.|+.+.+|+.....    .+..+.. ...+.++.|+|++ .+++++  .|+.|+|||+.+++++..+. |...|
T Consensus       293 a~~~gs~D~~I~iwd~~t~~----~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V  367 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGA----CLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV  367 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTE----EEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEeecCCCEEEEEeCCccc----cceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            22345678899999876543    3444444 4578999999998 666654  79999999999999999986 99999


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ++|+|+| ++.+|++|+.|++|+|||+......
T Consensus       368 ~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          368 LSLTMSP-DGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEEEECT-TSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEEEcC-CCCEEEEEecCCeEEEEECCCCCcc
Confidence            9999999 9999999999999999999875433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=5e-21  Score=197.95  Aligned_cols=220  Identities=11%  Similarity=0.068  Sum_probs=174.4

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCC---eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCC
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGED  305 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg---~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~D  305 (531)
                      .+..+...+.+++|+|+|++|++++.++   .|++||+.++..        ..+..|.+.+.+++|+|||++|+ +++.|
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------EEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            4555667788899999999999998875   999999986432        23667888999999999999888 66666


Q ss_pred             Cc--EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          306 GT--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       306 g~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      +.  |++||+.+++.                                                               ..
T Consensus       245 g~~~i~~~d~~~~~~---------------------------------------------------------------~~  261 (415)
T 2hqs_A          245 GSLNLYVMDLASGQI---------------------------------------------------------------RQ  261 (415)
T ss_dssp             SSCEEEEEETTTCCE---------------------------------------------------------------EE
T ss_pred             CCceEEEEECCCCCE---------------------------------------------------------------Ee
Confidence            65  88899866541                                                               22


Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEeC-CC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC---CeEEEE
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIW  456 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s~-Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D---g~I~Iw  456 (531)
                      +..|...+.+++|+|+| .|++++. ++  .|.+||+.+++......+...+.+++|+| ++++|++++.+   ..|++|
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEE
Confidence            34567789999999999 7877775 44  68888998887655555778899999999 99999888764   589999


Q ss_pred             eCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       457 d~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~  531 (531)
                      |+.+++...+..+. .+.+++|+|||++|++++.++   .|++||+.++.+. .+        ..+...|..++|+|.
T Consensus       341 d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~-~l--------~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          341 DLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RL--------PATDGQVKFPAWSPY  408 (415)
T ss_dssp             ETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-EC--------CCSSSEEEEEEECCC
T ss_pred             ECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE-Ee--------eCCCCCCcCCccccc
Confidence            99999887766664 899999999999999998877   7999999855432 21        123478999999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=8.5e-22  Score=202.12  Aligned_cols=226  Identities=12%  Similarity=0.083  Sum_probs=152.0

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc-----cceecCCCCCeeEEEeecCCcceeeeeccccccccccccc
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-----DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (531)
                      ..+....+.+++.+||+|+.|++|+|||+.++...     ..+..|...+..+.|.+....        ........+.+
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~--------~~~~d~~~las  161 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSA--------DNRLAEQVIAS  161 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECT--------TCSEEEEEEEE
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccc--------ccCCCCCEEEE
Confidence            33334444556778999999999999999887643     334566677777777653210        11123345577


Q ss_pred             cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe------------
Q 009614          360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF------------  425 (531)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~------------  425 (531)
                      ++.|..+.+|+...    ..++..+.+|...|.+++|+|++  +|++++.|++|++||+++++.....            
T Consensus       162 ~s~D~tv~~Wd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~  237 (393)
T 4gq1_A          162 VGDDCTLIIWRLTD----EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL  237 (393)
T ss_dssp             EETTSEEEEEEEET----TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE
T ss_pred             EECCCeEEEEECCC----CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE
Confidence            88999999998754    34566778899999999999987  7999999999999999887654321            


Q ss_pred             --------------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEE---------------
Q 009614          426 --------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSA---------------  475 (531)
Q Consensus       426 --------------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~---------------  475 (531)
                                    .|...|.++.|++.++..|++++.|+++++||+..++... +..+...+..               
T Consensus       238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (393)
T 4gq1_A          238 TLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS  317 (393)
T ss_dssp             EEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC
T ss_pred             ecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc
Confidence                          2667889999984499999999999999999998765442 3333333332               


Q ss_pred             ---EEEcc--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          476 ---VCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       476 ---v~~sp--dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                         .+|+|  ++.++++|+.||.|+|||+.+++......        .+...|++++|+|
T Consensus       318 ~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--------~~~~~V~svafsp  369 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--------QLGMPIVDFCWHQ  369 (393)
T ss_dssp             SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--------ECSSCEEEEEECT
T ss_pred             ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--------CCCCcEEEEEEcC
Confidence               33443  34467788899999999999988765432        2346899999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=2.7e-20  Score=183.31  Aligned_cols=224  Identities=12%  Similarity=-0.003  Sum_probs=150.9

Q ss_pred             EEeeecCCeEEEEeCCCCcccccccccceEEcccC-------------------------CCEEEEEEccC----CCEEE
Q 009614          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-------------------------GSILTMKFSLD----GQYLA  300 (531)
Q Consensus       250 lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-------------------------~~I~~l~fspd----g~~La  300 (531)
                      ++++ ....|++|+..+..    +.....+++.|.                         ..|+.|+|+||    +++++
T Consensus        57 ~~~~-~~~~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~  131 (356)
T 2w18_A           57 IITA-CEDVVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL  131 (356)
T ss_dssp             EEEE-ESSEEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE
T ss_pred             EEEe-ccceEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE
Confidence            4445 45889999988752    112223344444                         35677777888    88888


Q ss_pred             EEeCCCcEEEEEcccCccccce-ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          301 SGGEDGTVRVWKVIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       301 sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      +++.+  +++|++.+++.+... ..                                     .+..+.+|+...   .++
T Consensus       132 s~g~~--~~v~~l~~g~lv~ss~~g-------------------------------------~d~~V~~~~~s~---dG~  169 (356)
T 2w18_A          132 KSGNI--KAVLGLTKRRLVSSSGTL-------------------------------------SDQQVEVMTFAE---DGG  169 (356)
T ss_dssp             EEEEE--EEEEEETTTEEEEEESSS-------------------------------------TTCEEEEEEECT---TSC
T ss_pred             eCCCe--EEEEecCCCcEEEecccC-------------------------------------CCCcEEEEEECC---CCc
Confidence            87754  778888665543321 11                                     233333333211   123


Q ss_pred             ceeEeecCCCCeeEEEEcC---CC-eEEEEeCCCcEEEEECCCCeEEEEee-c---CCceEEEEEeeCCCCEE-------
Q 009614          380 PLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H---NNYVTSVAFNPVDDNYF-------  444 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp---~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h---~~~V~sv~fsp~d~~~l-------  444 (531)
                      .+..+.+|...+..++|++   ++ +|++++.|++|+|||+.++++++++. |   ...+.+++|+| ++.++       
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~  248 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPC  248 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC---
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCC
Confidence            3566778999999999999   55 99999999999999999999999996 3   34678889999 88876       


Q ss_pred             -----EEEeCCCeEEEEeCCCCeEEEe------cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614          445 -----ISGSIDGKVRIWEVRRCQVVDY------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ  513 (531)
Q Consensus       445 -----~sgs~Dg~I~Iwd~~~~~~~~~------~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~  513 (531)
                           ++|+.|++|++||..+++.+..      .+|...+.+.  +.++.++++|+.||+|+|||+.+++++.+++.   
T Consensus       249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g---  323 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLPP---  323 (356)
T ss_dssp             ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEECC---
T ss_pred             CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEecC---
Confidence                 5688999999999999987642      2555554443  34488999999999999999999999887542   


Q ss_pred             ccccCCCceeeeEEEee
Q 009614          514 GKKKLPGKRITGFQVVK  530 (531)
Q Consensus       514 ~~kk~~~~~It~l~f~p  530 (531)
                       +.   ...+..++|+|
T Consensus       324 -H~---~~vvs~vafSP  336 (356)
T 2w18_A          324 -VS---DQHWSFVKWSG  336 (356)
T ss_dssp             -C-----CCCCEEEECS
T ss_pred             -CC---CCeEEEEEECC
Confidence             11   12234578876

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=2.2e-20  Score=194.16  Aligned_cols=212  Identities=14%  Similarity=0.086  Sum_probs=154.5

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCccc---------ccccccceEEcccCCCEEEEEEccCCCEEE----EEe
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---------LSSLYTGQEFLAHEGSILTMKFSLDGQYLA----SGG  303 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~---------~~~~~~~~~l~~H~~~I~~l~fspdg~~La----sgs  303 (531)
                      ..+.+++++++.++++|+.++ |+||+.......         ...... .....|.+.|++++|+|+|++||    +|+
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            456689999999999998888 889875422110         000001 11234677899999999999999    788


Q ss_pred             CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                      .|++|+|||+.++.....     .....                                              -..+..
T Consensus       116 ~d~~v~iwd~~~~~~~~~-----~~~~~----------------------------------------------~~~~~~  144 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAK-----QQKRP----------------------------------------------FAYHKL  144 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTC-----SSCCC----------------------------------------------SEEEEC
T ss_pred             CCceEEEEEccccccCCc-----CCcce----------------------------------------------eeeeec
Confidence            999999999865421000     00000                                              001344


Q ss_pred             eecCCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          384 FQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      +.+|...|.+++|+|+ + +|++++.|++|++||++++..+... .|...|++++|+| ++++|++|+.||+|++||++.
T Consensus       145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~  223 (434)
T 2oit_A          145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL  223 (434)
T ss_dssp             CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC
T ss_pred             cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC
Confidence            5679999999999998 5 8999999999999999998765443 4889999999999 899999999999999999993


Q ss_pred             CeEEEecCC-------CCceEEEEEccCCCEEEEE-eCCCc------EEEEeCCCC
Q 009614          461 CQVVDYTDI-------REIVSAVCYCPDGKGGIVG-TMTGN------CRFYDIKDN  502 (531)
Q Consensus       461 ~~~~~~~~~-------~~~v~~v~~spdg~~l~sg-s~dg~------I~iwd~~~~  502 (531)
                      .....+..+       ...|.+++|++++.++++. ..+|.      +++|++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            322223222       2379999999998877553 34433      899999865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=7.1e-19  Score=181.73  Aligned_cols=187  Identities=12%  Similarity=0.048  Sum_probs=151.0

Q ss_pred             CCeEEeeecC------CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcccCc
Q 009614          247 DHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHE  317 (531)
Q Consensus       247 g~~lasgs~d------g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~I~iWd~~~~~  317 (531)
                      +..++.++.+      +.|++||+....        .+.+.+|...|.+++|+|||++|++++.++   .|++||+.+++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~  214 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA  214 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence            4555555443      799999987422        245778999999999999999999999885   99999997764


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                      .                                                               ..+..|.+.+.+++|+
T Consensus       215 ~---------------------------------------------------------------~~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          215 V---------------------------------------------------------------RQVASFPRHNGAPAFS  231 (415)
T ss_dssp             E---------------------------------------------------------------EEEECCSSCEEEEEEC
T ss_pred             E---------------------------------------------------------------EEeecCCCcccCEEEc
Confidence            2                                                               1234466789999999


Q ss_pred             CCC-eEE-EEeCCCc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CC--eEEEEeCCCCeEEEecCCC
Q 009614          398 KNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIR  470 (531)
Q Consensus       398 p~~-~l~-s~s~Dg~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg--~I~Iwd~~~~~~~~~~~~~  470 (531)
                      |+| .|+ +++.++.  |++||+.+++......|...+.+++|+| ++++|++++. ++  .|++||+.+++...+..+.
T Consensus       232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~  310 (415)
T 2hqs_A          232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG  310 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence            999 666 6666655  9999999988866666888999999999 9998888876 44  7888899998877666777


Q ss_pred             CceEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEE
Q 009614          471 EIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLY  505 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~~l~  505 (531)
                      ..+..++|+|||++|++++.+   +.|++||+.++++.
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            889999999999999988865   57999999988763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=8.6e-19  Score=187.24  Aligned_cols=266  Identities=12%  Similarity=0.086  Sum_probs=187.3

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeC--CCCcccccccccceEEcccCCCEEEEEEcc----CCCEEEEEeC-CCcEEE
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-DGTVRV  310 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp----dg~~Lasgs~-Dg~I~i  310 (531)
                      +..++|+|+|+++++++.++.|++||+  .+..       ...++. +...+..++|+|    ||++|++++. +++|.|
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v  252 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  252 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence            446889999999999999999999999  4322       233455 345689999999    9999999885 899999


Q ss_pred             EEcccCccccceecCCC-----------CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          311 WKVIEHERLDGFDVQDT-----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      ||..+++.+..+.....           .+..+.+.+....               ..+....++.+.+|+.......  
T Consensus       253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~---------------~~vs~~~~g~i~vvd~~~~~~l--  315 (543)
T 1nir_A          253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE---------------FIVNVKETGKVLLVNYKDIDNL--  315 (543)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE---------------EEEEETTTTEEEEEECTTSSSC--
T ss_pred             EeccccccceeecccCcccCccccccCCceEEEEECCCCCE---------------EEEEECCCCeEEEEEecCCCcc--
Confidence            99999988777654211           1122222222211               1233445667777776543211  


Q ss_pred             ceeEeecCCCCeeEEEEcCCC-eEEE-EeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEe-CCC
Q 009614          380 PLHEFQGHSSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-IDG  451 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~~-~l~s-~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs-~Dg  451 (531)
                      .+..+ .+...+.++.|+|++ +|++ +..+++|.+||+.+++++..+.     |......+ ++|..+.+++++. .|+
T Consensus       316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~  393 (543)
T 1nir_A          316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG  393 (543)
T ss_dssp             EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred             eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc
Confidence            11122 356678899999999 5554 4568999999999999988875     55444443 5773467777776 589


Q ss_pred             eEEEEeCCC-------CeEEE-ecCCCCceEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCeEE-EEeeeeeccc
Q 009614          452 KVRIWEVRR-------CQVVD-YTDIREIVSAVCYCPDGKGGIVGT-------MTGNCRFYDIKDNQLY-QQNQICLQGK  515 (531)
Q Consensus       452 ~I~Iwd~~~-------~~~~~-~~~~~~~v~~v~~spdg~~l~sgs-------~dg~I~iwd~~~~~l~-~~~~~~~~~~  515 (531)
                      +|.|||+.+       .+++. +..+...+..|+++|+|++|++++       .+++|.+||+.+++.. ..+.+.--..
T Consensus       394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~  473 (543)
T 1nir_A          394 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD  473 (543)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred             eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence            999999998       77774 666777888999999999999987       3779999999998866 3332211000


Q ss_pred             ccCCCceeeeEEEee
Q 009614          516 KKLPGKRITGFQVVK  530 (531)
Q Consensus       516 kk~~~~~It~l~f~p  530 (531)
                      -..+++++..+.|+|
T Consensus       474 ~~~~~~~~~~~~~~~  488 (543)
T 1nir_A          474 LGEGAKRVVQPEYNK  488 (543)
T ss_dssp             CCSSCCEEEEEEECS
T ss_pred             cCCCCCceEeccCCC
Confidence            123357888888886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=1.6e-17  Score=166.27  Aligned_cols=258  Identities=11%  Similarity=0.054  Sum_probs=182.5

Q ss_pred             ccccceeeeCCCCeEEeeec-------CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCc
Q 009614          236 DRHGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGT  307 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~-------dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~  307 (531)
                      ..+..++|+|+++++++++.       ++.|.+||..+....       ..+. +...+..++|+|+|++++. ...++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------QAIH-NDLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------EEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------EEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence            34456899999998887663       678999998754422       2232 2345788999999996555 455799


Q ss_pred             EEEEEcccCccccceecCCCC---------CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          308 VRVWKVIEHERLDGFDVQDTD---------PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      |.+||+.+++....+......         +..+.+.++... ++..             ....++.+.+|+.....   
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~-------------~~~~~~~i~~~d~~~~~---  175 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYIS-------------GIGKESVIWVVDGGNIK---  175 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEE-------------EESSSCEEEEEETTTTE---
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEE-------------ecCCCceEEEEcCCCCc---
Confidence            999999999877776654322         233444433321 1111             11235567777765432   


Q ss_pred             cceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeC-CC
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DG  451 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~-Dg  451 (531)
                       .+..+..+...+..++|+|++ +|++++.++.|.+||+.+++.+..+.     +...+..++|+| +++++++++. ++
T Consensus       176 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~  253 (353)
T 3vgz_A          176 -LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAA  253 (353)
T ss_dssp             -EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSS
T ss_pred             -eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCC
Confidence             344455456668899999999 88889999999999999999888775     355688999999 8886666554 59


Q ss_pred             eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .|.+||+.+++.+........ ..++|+|+|++++++. .++.|.+||+.+++++..+...         ..+.+++|+|
T Consensus       254 ~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~  323 (353)
T 3vgz_A          254 EVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---------THPNSLALSA  323 (353)
T ss_dssp             EEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---------SEEEEEEECT
T ss_pred             EEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---------CCCCeEEEcC
Confidence            999999999988754333333 5699999999766655 6899999999999988765431         2456666664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=5.9e-18  Score=164.07  Aligned_cols=227  Identities=13%  Similarity=0.110  Sum_probs=159.6

Q ss_pred             eeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc-CccccceecCC-CCC
Q 009614          252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQD-TDP  329 (531)
Q Consensus       252 sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~-~~~~~~~~~~~-~~~  329 (531)
                      .++.++.|++|+.......        .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~--------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR--------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE--------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCCcee--------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc
Confidence            3567899999998754422        3556889999999999999999987 78999999988 76554443332 334


Q ss_pred             eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE-EEeC
Q 009614          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSA  407 (531)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~-s~s~  407 (531)
                      ..+.|.++....++... .           ......++.++...     .....+..+ ..+..++|+|++ .|+ ++..
T Consensus        88 ~~~~~spdg~~l~~~~~-~-----------~~~~~~l~~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           88 NDHGISPDGALYAISDK-V-----------EFGKSAIYLLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             SCCEECTTSSEEEEEEC-T-----------TTSSCEEEEEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred             cceEECCCCCEEEEEEe-C-----------CCCcceEEEEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECC
Confidence            55666655432222110 0           01223344443322     112333333 348899999999 555 7888


Q ss_pred             CCcEEEEEC--CCCeEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCC--CCeEEEecCCCCceEEEEEccCC
Q 009614          408 DKTVRLWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDG  482 (531)
Q Consensus       408 Dg~V~lwdl--~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~--~~~~~~~~~~~~~v~~v~~spdg  482 (531)
                      ++.++||++  .++.......+...+.+++|+| ++++|+.++ .++.++||++.  .+....+..+...+..++|+|+|
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG  228 (297)
T ss_dssp             TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred             CCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence            999999985  4555555556888999999999 888877666 58899999875  44555677777889999999999


Q ss_pred             CEEEEEeCC-----------CcEEEEeCCCCeEEE
Q 009614          483 KGGIVGTMT-----------GNCRFYDIKDNQLYQ  506 (531)
Q Consensus       483 ~~l~sgs~d-----------g~I~iwd~~~~~l~~  506 (531)
                      ++|++++.+           +.|++||+.+++...
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  263 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET  263 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence            999988876           569999999887644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=3.8e-17  Score=162.47  Aligned_cols=265  Identities=12%  Similarity=0.134  Sum_probs=165.5

Q ss_pred             ccccceeeeCCCCeEEeeecC-CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 009614          236 DRHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKV  313 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~d-g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~  313 (531)
                      ..+.+++|+|+|+++++++.+ +.|.+|++......+   .....+..+. .+..++|+|+|++|++++. ++.|.+|++
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            455678999999998888776 999999987221111   1122333333 7899999999998877665 889999999


Q ss_pred             c---cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc-ccccCccee--Eeec-
Q 009614          314 I---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKPLH--EFQG-  386 (531)
Q Consensus       314 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~-  386 (531)
                      .   +.+....+... ..+..+.+.++.... +              +....++.+.+|+... ..+.  ...  .+.. 
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l-~--------------~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~  175 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTL-W--------------VPALKQDRICLFTVSDDGHLV--AQDPAEVTTV  175 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEE-E--------------EEEGGGTEEEEEEECTTSCEE--EEEEEEEECS
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEE-E--------------EecCCCCEEEEEEecCCCcee--eecccccccC
Confidence            4   33333333222 223444444433211 1              1112345566666543 1111  111  2222 


Q ss_pred             CCCCeeEEEEcCCC-eEEE-EeCCCcEEEEECCC--CeE--EEEee-------cCCceEEEEEeeCCCCEEE-EEeCCCe
Q 009614          387 HSSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGI--DRC--LRVFS-------HNNYVTSVAFNPVDDNYFI-SGSIDGK  452 (531)
Q Consensus       387 h~~~I~~l~~sp~~-~l~s-~s~Dg~V~lwdl~~--~~~--l~~~~-------h~~~V~sv~fsp~d~~~l~-sgs~Dg~  452 (531)
                      ....+..++|+|++ +|+. +..++.|.+|++..  ++.  +..+.       ....+..++|+| ++++|+ ++..++.
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASL  254 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTE
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCE
Confidence            33478899999999 5554 45889999999953  332  22222       123577899999 887776 5557999


Q ss_pred             EEEEeCC--CC--eEEEecCCCCceEEEEEccCCCEEEEEe-CCCcEEEE--eCCCCeEEEEeeeeecccccCCCceeee
Q 009614          453 VRIWEVR--RC--QVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFY--DIKDNQLYQQNQICLQGKKKLPGKRITG  525 (531)
Q Consensus       453 I~Iwd~~--~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iw--d~~~~~l~~~~~~~~~~~kk~~~~~It~  525 (531)
                      |.+||+.  ++  +.+........+..++|+|+|++|++++ .++.|.+|  |..++++.....+..       +....+
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-------g~~p~~  327 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-------GQGPMW  327 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-------SSSCCE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-------CCCCee
Confidence            9999998  33  3443333333488999999999988888 58999999  555776544333322       133456


Q ss_pred             EEEee
Q 009614          526 FQVVK  530 (531)
Q Consensus       526 l~f~p  530 (531)
                      ++|.|
T Consensus       328 i~~~~  332 (343)
T 1ri6_A          328 VVVNA  332 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            66654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1.1e-18  Score=181.38  Aligned_cols=197  Identities=17%  Similarity=0.137  Sum_probs=141.5

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      ...++.+++++++.+|++++.|+ |+||+.......   .......                                  
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~----------------------------------   77 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDP----------------------------------   77 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCT----------------------------------
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCc----------------------------------
Confidence            34578999999999999999998 999886432110   0000000                                  


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE----EEeCCCcEEEEECCCC--------eE---EEEee-
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL----SSSADKTVRLWQVGID--------RC---LRVFS-  426 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~----s~s~Dg~V~lwdl~~~--------~~---l~~~~-  426 (531)
                      ..+..         ..+.. ...|...|.+++|+|++ +|+    +++.|++|+|||+.++        +.   +..+. 
T Consensus        78 ~~~~~---------~~~~~-~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  147 (434)
T 2oit_A           78 NKIVD---------KVQGL-LVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD  147 (434)
T ss_dssp             TCEEE---------CCCCE-EECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred             ccccc---------cCccc-cccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence            00000         00011 12367789999999999 777    7888999999998654        22   23333 


Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      |...|++++|+|.++++|++++.||+|+|||++++..+ ...+|...|++++|+|+|++|++|+.||.|++||++ ++..
T Consensus       148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~  226 (434)
T 2oit_A          148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK  226 (434)
T ss_dssp             GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred             CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence            88999999999944899999999999999999998655 466788899999999999999999999999999998 5555


Q ss_pred             EEeeeeecccccCCCceeeeEEEee
Q 009614          506 QQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       506 ~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ..+..+... ...+...|++++|++
T Consensus       227 ~~~~~~~~~-~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          227 KVIPCPPFY-ESDHPVRVLDVLWIG  250 (434)
T ss_dssp             EEECCCTTC-CTTSCEEEEEEEEEE
T ss_pred             ccccCCccc-CCCCceeEEEEEEec
Confidence            444322110 011234889998875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=1.8e-17  Score=177.00  Aligned_cols=239  Identities=11%  Similarity=0.097  Sum_probs=171.9

Q ss_pred             eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--ccCccc
Q 009614          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV--IEHERL  319 (531)
Q Consensus       242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~--~~~~~~  319 (531)
                      +++|++.++++++.++.|.+||......       .+.+..+.. +..++|+|||++|++++.|++|++||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence            5889999999999999999999875432       234553322 899999999999999999999999999  788777


Q ss_pred             cceecCCCCCeeEEEee----cCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec---------
Q 009614          320 DGFDVQDTDPSCLYFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG---------  386 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  386 (531)
                      ..+.. ...+..+.+++    +... ++.              ....+..+.+|+.....    ++..+..         
T Consensus       216 ~~i~~-g~~p~~va~sp~~~~dg~~-l~v--------------~~~~~~~v~v~D~~t~~----~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          216 AEIKI-GIEARSVESSKFKGYEDRY-TIA--------------GAYWPPQFAIMDGETLE----PKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEC-CSEEEEEEECCSTTCTTTE-EEE--------------EEEESSEEEEEETTTCC----EEEEEECCEECSSSCC
T ss_pred             EEEec-CCCcceEEeCCCcCCCCCE-EEE--------------EEccCCeEEEEeccccc----cceeecccCcccCccc
Confidence            76663 23344555554    3221 111              11224556677655432    2333332         


Q ss_pred             -CCC-CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEE--EeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCC
Q 009614          387 -HSS-EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVR  459 (531)
Q Consensus       387 -h~~-~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~--~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~  459 (531)
                       |.. .+..+.++|++  ++++...++.|.+||+.+.+.+.  .+.+...+..+.|+| ++++|+++ ..+++|.+||+.
T Consensus       276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~  354 (543)
T 1nir_A          276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSK  354 (543)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETT
T ss_pred             cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEECC
Confidence             223 78899999987  77788889999999998876554  556777888999999 88877655 468999999999


Q ss_pred             CCeEEEecC-----CCCceEEEEEccC-CCEEEEEe-CCCcEEEEeCCC-------CeEEEEeee
Q 009614          460 RCQVVDYTD-----IREIVSAVCYCPD-GKGGIVGT-MTGNCRFYDIKD-------NQLYQQNQI  510 (531)
Q Consensus       460 ~~~~~~~~~-----~~~~v~~v~~spd-g~~l~sgs-~dg~I~iwd~~~-------~~l~~~~~~  510 (531)
                      +++++....     |......+ ++|+ |..++++. .|++|.+||+.+       .+++++++.
T Consensus       355 tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~  418 (543)
T 1nir_A          355 DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  418 (543)
T ss_dssp             TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence            999875322     44333333 5777 66667765 589999999998       777777664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.77  E-value=5.3e-17  Score=161.29  Aligned_cols=242  Identities=9%  Similarity=0.122  Sum_probs=163.4

Q ss_pred             ceeeeCCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC---cEEEEEccc
Q 009614          240 SATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIE  315 (531)
Q Consensus       240 s~~fspdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~I~iWd~~~  315 (531)
                      .++|+|+|+++++++. ++.|.+||.......      ...+..+..++.+++|+|+|++|+++..++   .|.+||+.+
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCE------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            6899999997666554 899999999865431      234556666666699999999999555553   899999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCce-EEEeCCcccc-ccCcceeEeecCCCCeeE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT-CVVLPPKVFR-LLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~h~~~I~~  393 (531)
                      ++....+.... .+..+.+.++... ++....              .+.. +.+|+...-. +.... .....+...+..
T Consensus       118 ~~~~~~~~~~~-~~~~~~~spdg~~-l~~~~~--------------~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~  180 (331)
T 3u4y_A          118 NKFISTIPIPY-DAVGIAISPNGNG-LILIDR--------------SSANTVRRFKIDADGVLFDTG-QEFISGGTRPFN  180 (331)
T ss_dssp             TEEEEEEECCT-TEEEEEECTTSSC-EEEEEE--------------TTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEE
T ss_pred             CCeEEEEECCC-CccceEECCCCCE-EEEEec--------------CCCceEEEEEECCCCcEeecC-CccccCCCCccc
Confidence            88776665432 3345555554432 222211              1122 3444332100 00000 111234456899


Q ss_pred             EEEcCCC-eEE-EEeCCCcEEEEECCCCeE---EEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCCeE--EE
Q 009614          394 LSWSKNG-FLL-SSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQV--VD  465 (531)
Q Consensus       394 l~~sp~~-~l~-s~s~Dg~V~lwdl~~~~~---l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~~~--~~  465 (531)
                      ++|+|+| +|+ ++..++.|.+||+.+++.   +..+.....+..++|+| +++++++++ .++.|.+||+.++++  +.
T Consensus       181 ~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~  259 (331)
T 3u4y_A          181 ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVK  259 (331)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence            9999999 454 455789999999999888   77777778889999999 898766554 578899999999887  22


Q ss_pred             -ecCC----CC---ceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEE
Q 009614          466 -YTDI----RE---IVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLY  505 (531)
Q Consensus       466 -~~~~----~~---~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~  505 (531)
                       +...    ..   ....++|+|||++|++++. ++.|.+||+.+...-
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence             1111    11   2356899999998876655 569999999876654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.77  E-value=2.2e-16  Score=156.83  Aligned_cols=237  Identities=12%  Similarity=0.112  Sum_probs=159.8

Q ss_pred             eeeCCCCe-EEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcccCcc-
Q 009614          242 TLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHER-  318 (531)
Q Consensus       242 ~fspdg~~-lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~-  318 (531)
                      .|.+++.+ ++++..++.|.+||.......       ..+..+...+ .++|+|+|++|++++. ++.|.+||+.+++. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            45565555 677888999999998855432       2344455666 9999999997776665 89999999998876 


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      ...+........++.+.++....+  ...           ..+....+.+|+.....    .+..+.. .....+++|+|
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~--~~~-----------~~~~~~~i~v~d~~~~~----~~~~~~~-~~~~~~~~~sp  137 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAV--TVT-----------GLNHPFNMQSYSFLKNK----FISTIPI-PYDAVGIAISP  137 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEE--ECC-----------CSSSSCEEEEEETTTTE----EEEEEEC-CTTEEEEEECT
T ss_pred             EEecccCCCCccceEECCCCCEEE--Eec-----------CCCCcccEEEEECCCCC----eEEEEEC-CCCccceEECC
Confidence            554544433333255544332111  100           00111267788765433    2333433 34568999999


Q ss_pred             CC-eEE-EEeCCCc-EEEEECCCCeEE-----EEeecCCceEEEEEeeCCCCEEE-EEeCCCeEEEEeCCCCeE---EEe
Q 009614          399 NG-FLL-SSSADKT-VRLWQVGIDRCL-----RVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQV---VDY  466 (531)
Q Consensus       399 ~~-~l~-s~s~Dg~-V~lwdl~~~~~l-----~~~~h~~~V~sv~fsp~d~~~l~-sgs~Dg~I~Iwd~~~~~~---~~~  466 (531)
                      +| +|+ ++..++. |.+|++.....+     ..+.....+..++|+| ++++++ ++..++.|++||+.+++.   +..
T Consensus       138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence            99 454 5556688 999998754332     2334556689999999 888554 455689999999998876   654


Q ss_pred             cCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEE
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLY  505 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~l~  505 (531)
                      ......+..++|+|||++|+++. .++.|.+||+.++++.
T Consensus       217 ~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~  256 (331)
T 3u4y_A          217 VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS  256 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred             ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence            44557788999999999877665 4778999999999883

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.77  E-value=1.7e-17  Score=183.88  Aligned_cols=202  Identities=12%  Similarity=0.094  Sum_probs=155.1

Q ss_pred             cccceeeeCCCCeEEeeec-CC-----eEEEEeCCCCcccccccccceEEcccC------------------------CC
Q 009614          237 RHGSATLKPGDHELTLGQR-MR-----RVRVHPVKKQSRELSSLYTGQEFLAHE------------------------GS  286 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~-dg-----~I~vwd~~~~~~~~~~~~~~~~l~~H~------------------------~~  286 (531)
                      .+.+++|+|||++|++++. ++     .|++|++.++...       +.+..|.                        ..
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-------LLVDSKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-------EEECGGGTC--------------------CCEE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-------EccchhhcccccccccchhhhhhhhhhhccccC
Confidence            4567899999999999988 88     9999999865432       1122222                        23


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceE
Q 009614          287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC  366 (531)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (531)
                      |.+++|+|||++|++++. +.|++||+.++...                                               
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----------------------------------------------  142 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----------------------------------------------  142 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----------------------------------------------
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----------------------------------------------
Confidence            789999999999999987 89999998765200                                               


Q ss_pred             EEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec-CCc--------------
Q 009614          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-NNY--------------  430 (531)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h-~~~--------------  430 (531)
                                   ....+..|...+..++|+|+| +|++++ ++.|++||+.+++....... ...              
T Consensus       143 -------------~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          143 -------------AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             -------------SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred             -------------eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence                         011233456779999999999 777776 56999999999887765542 221              


Q ss_pred             --eEEEEEeeCCCCEEEEEeCCC---------------------------------eEEEEeCCC-CeEEEec---CCCC
Q 009614          431 --VTSVAFNPVDDNYFISGSIDG---------------------------------KVRIWEVRR-CQVVDYT---DIRE  471 (531)
Q Consensus       431 --V~sv~fsp~d~~~l~sgs~Dg---------------------------------~I~Iwd~~~-~~~~~~~---~~~~  471 (531)
                        +.+++|+| |+++|++++.|+                                 .|++||+.+ ++.....   .+..
T Consensus       209 ~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  287 (741)
T 2ecf_A          209 DRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDI  287 (741)
T ss_dssp             CCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSE
T ss_pred             ccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcce
Confidence              47899999 999999988776                                 899999998 8765443   4667


Q ss_pred             ceEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCeEEEEee
Q 009614          472 IVSAVCYCPDGKGGIVGTM-----TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~-----dg~I~iwd~~~~~l~~~~~  509 (531)
                      .+..++| |||++|++++.     ++.|++||+.++++.....
T Consensus       288 ~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          288 YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence            8999999 99999998764     5679999999998765544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=2.4e-17  Score=177.69  Aligned_cols=234  Identities=10%  Similarity=-0.004  Sum_probs=164.9

Q ss_pred             cccceeeeCCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeC---CCcEEEE
Q 009614          237 RHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---DGTVRVW  311 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~I~iW  311 (531)
                      .+.+++|+|||+.||.++. +|+++||++..+..        +.+..|. ..|..++|+|| +++++++.   +...+||
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            4667899999999998876 99999999743221        2244455 68999999999 77887765   5667777


Q ss_pred             Eccc--CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          312 KVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       312 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      .+..  ......+... .......+.++....++...              .. ....+|+....     ....+..+..
T Consensus        94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~--------------~~-~~~~l~d~~~g-----~~~~l~~~~~  152 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGA--------------TE-DRVALYALDGG-----GLRELARLPG  152 (582)
T ss_dssp             EEETTSTTCCEECTTS-CSBEEEEEEECSSCEEEEEE--------------CS-SCEEEEEEETT-----EEEEEEEESS
T ss_pred             EEeccCCCccccccCC-CCceeeeeCCCCCeEEEEec--------------CC-CCceEEEccCC-----cEEEeecCCC
Confidence            6654  2221122111 12234455555443333211              11 22225543321     1222333333


Q ss_pred             CeeEEEEcCCC-eEEEEeCC----CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC--eEEEEeCCCCe
Q 009614          390 EVLDLSWSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQ  462 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~D----g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg--~I~Iwd~~~~~  462 (531)
                        .+++|+|+| +|++++.+    ..|++||+.+++......|...+..++|+| |+++|+++..++  .|++||+.+++
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCc
Confidence              899999999 88877776    789999999988776667888999999999 999999888888  89999999988


Q ss_pred             EEEecCCCCceEEEE--------EccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          463 VVDYTDIREIVSAVC--------YCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       463 ~~~~~~~~~~v~~v~--------~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ...+..+...+..++        |+|||.++++++.+|.++||++  ++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          230 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            775566666666666        9999998999999999999999  6554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=1.2e-16  Score=158.52  Aligned_cols=239  Identities=11%  Similarity=0.062  Sum_probs=167.5

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEc-c----cCCCEEEEEEccCCCEEEEEe--------
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-A----HEGSILTMKFSLDGQYLASGG--------  303 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~----H~~~I~~l~fspdg~~Lasgs--------  303 (531)
                      +..++|+|+|+++ +++..++.|.+||..+....       ..+. +    |...+..++|+|+|++|++++        
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL-------GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-------EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE-------eeEEcCCcccccccccceEECCCCCEEEEEecccccccc
Confidence            4568999999866 45666899999998764432       1121 1    223677899999999998886        


Q ss_pred             ----CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          304 ----EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       304 ----~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                          .++.|.+||+.+++....+.. ...+..+.+.++....++.                  ++.+.+|+.....    
T Consensus       109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~------------------~~~i~~~d~~~~~----  165 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL------------------GRDLHVMDPEAGT----  165 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE------------------SSSEEEEETTTTE----
T ss_pred             cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe------------------CCeEEEEECCCCc----
Confidence                579999999998877666554 2334455555443322111                  2346666654432    


Q ss_pred             ceeEeecCCCCeeEEEEcCCC-eEEEEe-CCC-----------------------cEEEEECCCCeEEEEe---ecCCce
Q 009614          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK-----------------------TVRLWQVGIDRCLRVF---SHNNYV  431 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~~-~l~s~s-~Dg-----------------------~V~lwdl~~~~~l~~~---~h~~~V  431 (531)
                      .+..+..+.. ...+.|+|++ .|+..+ .++                       .|.+||+.+++.. .+   .+...+
T Consensus       166 ~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~  243 (337)
T 1pby_B          166 LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFY  243 (337)
T ss_dssp             EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCE
T ss_pred             Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCce
Confidence            2223332220 1133678887 443333 222                       4689999998875 33   266778


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      .+++|+| ++++++++  ++.|++||+.+++.+........+.+++|+|||++|++++.++.|++||+.+++.+..++..
T Consensus       244 ~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          244 FSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             eeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999999 99998888  79999999999988765555567889999999999999999999999999999998877654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=2.6e-17  Score=159.44  Aligned_cols=232  Identities=12%  Similarity=0.022  Sum_probs=157.7

Q ss_pred             eeeeccccceeeeCCCCeEEeeecCCeEEEEeCCC-CcccccccccceEEccc-CCCEEEEEEccCCCEEEEEe--CCCc
Q 009614          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-QSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGG--EDGT  307 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~-~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs--~Dg~  307 (531)
                      ..+...+.+++|+|+|+++++++ ++.|++|++.. ....       ..+.+| ...|.+++|+|+|++|++++  .++.
T Consensus        38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFATICNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred             ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------EeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence            34556677899999999999986 78999999986 4322       123344 46789999999999999998  4456


Q ss_pred             EEEEEcc--cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          308 VRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       308 I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ++||.+.  ++. ...+.... ....+.|.++....++.               ...++.+.+|....   .......+.
T Consensus       110 ~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~---------------~~~~~~~~l~~~~~---~~~~~~~~~  169 (297)
T 2ojh_A          110 SAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYC---------------GIRDQVFDIYSMDI---DSGVETRLT  169 (297)
T ss_dssp             CEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEE---------------EEETTEEEEEEEET---TTCCEEECC
T ss_pred             ceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEE---------------ECCCCceEEEEEEC---CCCcceEcc
Confidence            6666653  333 22222221 23333444333222211               12223333443211   122345566


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECC-CCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCC-----------
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG-IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID-----------  450 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~-~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~D-----------  450 (531)
                      .|...+.+++|+|++ .|+.++ .++.+++|++. .+..+..+ .|...+.+++|+| ++++|++++.+           
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCc
Confidence            788899999999999 666555 58999999886 44444444 4778899999999 99999888766           


Q ss_pred             CeEEEEeCCCCeEE---EecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       451 g~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      +.|++||+.+++..   ....|...+..++|+|+|++|++++.+.
T Consensus       249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            56999999987643   3447788899999999999998887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=2.3e-16  Score=157.39  Aligned_cols=254  Identities=9%  Similarity=0.072  Sum_probs=171.9

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEEcccCcc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~  318 (531)
                      +++++++.++++++.++.|++||..+....       +.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVY-------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEE-------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEE-------EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence            578889999999999999999998754321       2233332 2578899999998665 555789999999998887


Q ss_pred             ccceecCCC------CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          319 LDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       319 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      ...+.....      .+..+.+.++....++... .....   ..........+.+|+....... +.+..+. +...+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~---~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~  151 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN-PTQRL---NDHYVVKPPRLEVFSTADGLEA-KPVRTFP-MPRQVY  151 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE-EEEEC---SSCEEECCCEEEEEEGGGGGGB-CCSEEEE-CCSSCC
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcc-ccccc---ccccccCCCeEEEEECCCcccc-ceeeecc-CCCccc
Confidence            766654321      1445555554432222211 00000   0000111356777776543221 2223333 334688


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCC-------------------------------------------
Q 009614          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNN-------------------------------------------  429 (531)
Q Consensus       393 ~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~-------------------------------------------  429 (531)
                      +++|+|++.+++++  +.|.+||+.+++.+..+....                                           
T Consensus       152 ~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          152 LMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             ceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99999999544444  349999999988777664211                                           


Q ss_pred             --------------------------ceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC
Q 009614          430 --------------------------YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (531)
Q Consensus       430 --------------------------~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~  483 (531)
                                                .+.+++|+|.++++++++  ++.|.+||+.+++.+........+..++|+|+|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD  307 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence                                      234566667467777777  8899999999999876554555678999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          484 GGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +|++++.++.|++||+.+++++..++..
T Consensus       308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          308 KLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEecCCCeEEEEeccccceeeeeecC
Confidence            9999888999999999999998877654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=4.6e-16  Score=155.91  Aligned_cols=246  Identities=12%  Similarity=0.092  Sum_probs=157.7

Q ss_pred             ccccceeeeCCCCeEEeeec---CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEE
Q 009614          236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW  311 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~---dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iW  311 (531)
                      .....++|+|+|+ +++++.   ++.|++|++..+...     ....+..|...+..++|+|+|++|++++ .++.|.+|
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            4455689999999 554443   689999998643321     2223455777899999999999998888 68999999


Q ss_pred             EcccC-c--cccceecCCC---------CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc-cccccC
Q 009614          312 KVIEH-E--RLDGFDVQDT---------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VFRLLE  378 (531)
Q Consensus       312 d~~~~-~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  378 (531)
                      ++... .  .+..+.....         .+..+.+.++..  ++.              ....+..+.+|+.. ...+  
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v--------------~~~~~~~v~~~~~~~~g~~--  175 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAV--------------IDLGSDKVYVYNVSDAGQL--  175 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEE--------------EETTTTEEEEEEECTTSCE--
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEE--------------EeCCCCEEEEEEECCCCcE--
Confidence            99632 2  2222221111         122344443332  222              22233455555544 1111  


Q ss_pred             cceeEeecC-CCCeeEEEEcCCC-eEEE-EeCCCcEEEEECCC--CeEE--EEee-cC------CceEEEEEeeCCCCEE
Q 009614          379 KPLHEFQGH-SSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGI--DRCL--RVFS-HN------NYVTSVAFNPVDDNYF  444 (531)
Q Consensus       379 ~~~~~~~~h-~~~I~~l~~sp~~-~l~s-~s~Dg~V~lwdl~~--~~~l--~~~~-h~------~~V~sv~fsp~d~~~l  444 (531)
                      .....+..+ ...+..++|+|+| +|++ +..++.|.+|++..  ++..  ..+. ..      ..+..++|+| ++++|
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l  254 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFL  254 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEE
Confidence            111222222 2367889999999 4554 56788999999874  5432  2222 11      4588999999 89877


Q ss_pred             -EEEeCCCeEEEEeCCC-C--eEE-EecCCCCceEEEEEccCCCEEEEEeCC-CcEEEE--eCCCCeEEE
Q 009614          445 -ISGSIDGKVRIWEVRR-C--QVV-DYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFY--DIKDNQLYQ  506 (531)
Q Consensus       445 -~sgs~Dg~I~Iwd~~~-~--~~~-~~~~~~~~v~~v~~spdg~~l~sgs~d-g~I~iw--d~~~~~l~~  506 (531)
                       +++..++.|.+|++.. +  +.+ ....+...+..++|+|||++|++++.+ +.|.+|  |..++++..
T Consensus       255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence             5566789999999973 2  333 244445668899999999998888765 899999  666777764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.75  E-value=1.9e-16  Score=157.34  Aligned_cols=189  Identities=13%  Similarity=0.170  Sum_probs=136.1

Q ss_pred             eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcc--cCccccceecC
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTVRVWKVI--EHERLDGFDVQ  325 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~I~iWd~~--~~~~~~~~~~~  325 (531)
                      ++++++.++.|++|++.....    .... ....|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...      
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~------   75 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA----LTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------   75 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC----EEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred             EEEeCCCCCeEEEEEECCCCc----EEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence            344557899999999863111    1111 123477789999999999999988886 999999986  32210      


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEE
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s  404 (531)
                                                                            .+..+..+. .+..++|+|++ +|++
T Consensus        76 ------------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~~l~~  100 (343)
T 1ri6_A           76 ------------------------------------------------------FAAESALPG-SLTHISTDHQGQFVFV  100 (343)
T ss_dssp             ------------------------------------------------------EEEEEECSS-CCSEEEECTTSSEEEE
T ss_pred             ------------------------------------------------------eccccccCC-CCcEEEEcCCCCEEEE
Confidence                                                                  011222223 67899999999 6665


Q ss_pred             Ee-CCCcEEEEEC---CCCeEEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCC-CeEE-----E-ecCCCCc
Q 009614          405 SS-ADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR-CQVV-----D-YTDIREI  472 (531)
Q Consensus       405 ~s-~Dg~V~lwdl---~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~-~~~~-----~-~~~~~~~  472 (531)
                      ++ .++.|.+||+   ...+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ +++.     . .......
T Consensus       101 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  179 (343)
T 1ri6_A          101 GSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG  179 (343)
T ss_dssp             EETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred             EecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCC
Confidence            55 5889999999   4445556666666799999999 888887777 899999999987 6543     2 2223457


Q ss_pred             eEEEEEccCCCEEEEEe-CCCcEEEEeCC--CCeE
Q 009614          473 VSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQL  504 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs-~dg~I~iwd~~--~~~l  504 (531)
                      +..++|+|+|++|++++ .++.|++|++.  ++++
T Consensus       180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~  214 (343)
T 1ri6_A          180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  214 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            88999999999776555 78999999995  3544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.74  E-value=3.3e-17  Score=180.86  Aligned_cols=201  Identities=10%  Similarity=0.082  Sum_probs=152.5

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC---CEEEEEEccCCCEEEEEeCC---------
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGED---------  305 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D---------  305 (531)
                      ..+++|+|||+++++ +.||.|++|+..++..       .+.+.+|..   .|.+++|||||++|++++.+         
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            446899999998776 6899999999876543       233555654   49999999999999999875         


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.|.+||+.+++. ..+                                                           ....
T Consensus        91 ~~i~~~d~~~~~~-~~l-----------------------------------------------------------~~~~  110 (723)
T 1xfd_A           91 GYYVLSKIPHGDP-QSL-----------------------------------------------------------DPPE  110 (723)
T ss_dssp             SEEEEEESSSCCC-EEC-----------------------------------------------------------CCTT
T ss_pred             eeEEEEECCCCce-Eec-----------------------------------------------------------cCCc
Confidence            6788999877653 111                                                           1112


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCc------------------eEEEEEeeCCCCEEE
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY------------------VTSVAFNPVDDNYFI  445 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~------------------V~sv~fsp~d~~~l~  445 (531)
                      +|...+..++|+|+| .|+.++. +.|++||+.+++...... +...                  +.+++|+| |+++|+
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la  188 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLA  188 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEE
T ss_pred             cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEE
Confidence            355568899999999 8888776 799999999988776654 2332                  37899999 999999


Q ss_pred             EEeCCC----------------------------------eEEEEeCCCCeE-EEecCC------CCceEEEEEccCCCE
Q 009614          446 SGSIDG----------------------------------KVRIWEVRRCQV-VDYTDI------REIVSAVCYCPDGKG  484 (531)
Q Consensus       446 sgs~Dg----------------------------------~I~Iwd~~~~~~-~~~~~~------~~~v~~v~~spdg~~  484 (531)
                      +++.|+                                  .|++||+.+++. ..+..+      ...+..++|+|||++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence            987653                                  799999998874 444433      567899999999998


Q ss_pred             EEEEeCC----CcEEEEeCCCCeEEEEe
Q 009614          485 GIVGTMT----GNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       485 l~sgs~d----g~I~iwd~~~~~l~~~~  508 (531)
                      |++....    ..|++||+.++++....
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~  296 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVCTKKH  296 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence            8776543    57999999998876544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.73  E-value=1.6e-15  Score=151.68  Aligned_cols=226  Identities=13%  Similarity=0.070  Sum_probs=161.7

Q ss_pred             ccceeeeCCCCeEE-eeecCCeEEEEeCCCCcccccccccceEEcccCC---------CEEEEEEccCCCEEEEEe--CC
Q 009614          238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---------SILTMKFSLDGQYLASGG--ED  305 (531)
Q Consensus       238 ~~s~~fspdg~~la-sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~---------~I~~l~fspdg~~Lasgs--~D  305 (531)
                      ...++|+|+|++++ ++..++.|.+||..+....       ..+..+..         .+.+++|+|+|++|++++  .+
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-------EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            45689999999655 4556799999998765432       22333322         278999999999887776  48


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      +.|.+||+.+++....+......+..+.+.++....+                ....++.+.+|+......    +..+.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~----------------~~~~~~~i~~~d~~~~~~----~~~~~  223 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY----------------TTNADGELITIDTADNKI----LSRKK  223 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEE----------------EECTTSEEEEEETTTTEE----EEEEE
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEE----------------EEcCCCeEEEEECCCCeE----EEEEE
Confidence            8999999999888777664444455555555433211                122345666776654332    22332


Q ss_pred             ----cCCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeC
Q 009614          386 ----GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEV  458 (531)
Q Consensus       386 ----~h~~~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~  458 (531)
                          ++...+..++|+|++ +++.++ .++.|.+||+.+++.+..+..... ..++|+| ++++++++ ..++.|.+||+
T Consensus       224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~-dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNP-ARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEET-TTTEEEEEETTTTEEEEEET
T ss_pred             cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECC-CCCEEEEEECCCCeEEEEEC
Confidence                355678899999998 555554 559999999999999888874443 5799999 88855554 47899999999


Q ss_pred             CCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       459 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      .+++.+........+..++|+|||++|+++..++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence            9999887666667889999999999888877664

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.72  E-value=3.5e-16  Score=173.21  Aligned_cols=252  Identities=9%  Similarity=0.062  Sum_probs=168.3

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+.+++|+|||++|++++. +.|++|++......     ....+..|...+..++|+|||++||.++. +.|++||+.++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g  182 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG  182 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC
Confidence            4567899999999999886 99999999865200     11235567889999999999999999874 68999999887


Q ss_pred             ccccceecCCC----------------CCeeEEEeecCCcceeeeecccccc---------------ccccccccC--CC
Q 009614          317 ERLDGFDVQDT----------------DPSCLYFTINHLSQLIPIDVDKEKI---------------DKTKSLRKS--SD  363 (531)
Q Consensus       317 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~  363 (531)
                      +..........                ....+.|+++....++.........               .......+.  ..
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            65433322211                1345666666544333322111000               000000111  12


Q ss_pred             ceEEEeCCcc-ccccCcceeEe--ecCCCCeeEEEEcCCC-eEEEEeC-----CCcEEEEECCCCeEEEEeec-C-C---
Q 009614          364 LTCVVLPPKV-FRLLEKPLHEF--QGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGIDRCLRVFSH-N-N---  429 (531)
Q Consensus       364 ~~~~~~~~~~-~~~~~~~~~~~--~~h~~~I~~l~~sp~~-~l~s~s~-----Dg~V~lwdl~~~~~l~~~~h-~-~---  429 (531)
                      ..+.+|+... ...    ....  ..|...+..++| |+| .|++++.     +..|++||+.++++...+.. . .   
T Consensus       263 ~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          263 VKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP  337 (741)
T ss_dssp             EEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             eEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence            2566666543 221    1111  147788999999 999 6766543     57799999999988877752 2 2   


Q ss_pred             ceEEEEEeeCCCCEEEEEeCCCeEEEEeCC-CCeEEEecCCCCceEEE-EEccCCCEEEEE-eCCC--cEEEEeCCC
Q 009614          430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAV-CYCPDGKGGIVG-TMTG--NCRFYDIKD  501 (531)
Q Consensus       430 ~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~-~~~~~~~~~~~~~v~~v-~~spdg~~l~sg-s~dg--~I~iwd~~~  501 (531)
                      .+..++|+| +++++++++.||.++||.+. .++...+..+...+..+ .|+|||+.|+.. +.++  .++||++..
T Consensus       338 ~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          338 LHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCSCCEECT-TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             cCCceEECC-CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            456899999 88899999999987777664 23355677777788887 599999987654 4455  899999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.71  E-value=5e-16  Score=178.85  Aligned_cols=240  Identities=5%  Similarity=0.052  Sum_probs=174.4

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +..|...+.++.|+++ .+++++..++.++||.+......      .+.+..|. .+..++|+|||++|+++ .++.|.+
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~------~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~  269 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD------LRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYI  269 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS------CEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc------ceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEE
Confidence            3556667778899988 66677888899999986532211      12344454 46778999999999887 4899999


Q ss_pred             EEcccCccccceecCC-----------CCCeeEEEe-ecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          311 WKVIEHERLDGFDVQD-----------TDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      |++... .+..+....           ..+..+.|+ ++....++.                 ..+.+.+|+....    
T Consensus       270 ~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~-----------------~~~~i~~~~~~~~----  327 (1045)
T 1k32_A          270 FNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV-----------------SRGQAFIQDVSGT----  327 (1045)
T ss_dssp             ECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE-----------------ETTEEEEECTTSS----
T ss_pred             ecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEE-----------------EcCEEEEEcCCCC----
Confidence            998433 222332211           123344444 333221111                 1345666665432    


Q ss_pred             cceeEeecCCC-CeeEEEEcCCC-eEEEEeCCCcEE-EEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          379 KPLHEFQGHSS-EVLDLSWSKNG-FLLSSSADKTVR-LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       379 ~~~~~~~~h~~-~I~~l~~sp~~-~l~s~s~Dg~V~-lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                       ....+..|.. .+..++|+ +| .|++++.+..+. +||+.+++......|...+..++|+| ++++|++++.++.|++
T Consensus       328 -~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          328 -YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             -BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             -ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEE
Confidence             2334566777 89999999 88 888888888888 99998887665556778899999999 9999999999999999


Q ss_pred             EeCCCCeEEEec-CCCCceEEEEEccCCCEEEEEeCCC----------cEEEEeCCCCeE
Q 009614          456 WEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTG----------NCRFYDIKDNQL  504 (531)
Q Consensus       456 wd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg----------~I~iwd~~~~~l  504 (531)
                      ||+.+++..... .|...+..++|+|||++|++++.++          .|++||+.++++
T Consensus       405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             EECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            999999887654 7888899999999999999887754          899999998873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.71  E-value=1.1e-14  Score=146.66  Aligned_cols=266  Identities=13%  Similarity=0.100  Sum_probs=164.8

Q ss_pred             ccccceeeeCCCCeEEeeecC----CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 009614          236 DRHGSATLKPGDHELTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRV  310 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~d----g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~i  310 (531)
                      .....++|+|+|++|++++.+    +.|.+|++......+   ........+......+++  ++++|++++ .++.|.+
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~---~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL---HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            445568999999999988775    899999887532111   122233445567778888  888887776 5889999


Q ss_pred             EEcccCccccceec---CC-----------CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc-
Q 009614          311 WKVIEHERLDGFDV---QD-----------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR-  375 (531)
Q Consensus       311 Wd~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  375 (531)
                      |++.....+..+..   ..           ..+..+.+.++... ++              +....+..+.+|+..... 
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~--------------~~~~~~~~v~v~~~~~~~~  189 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LL--------------ADDLGTDQIHKFNINPNAN  189 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EE--------------EEETTTTEEEEEEECTTCC
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EE--------------EEeCCCCEEEEEEEcCCCC
Confidence            99976543322210   00           01122333333221 11              112233445555432211 


Q ss_pred             ------ccCc--ceeEeecCCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEE--EEee----cCCceEEEEEeeC
Q 009614          376 ------LLEK--PLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCL--RVFS----HNNYVTSVAFNPV  439 (531)
Q Consensus       376 ------~~~~--~~~~~~~h~~~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l--~~~~----h~~~V~sv~fsp~  439 (531)
                            +...  .......+...+..++|+|+| +|++++ .++.|.+|++.++...  ..+.    +...+..++|+| 
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-  268 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-  268 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-
Confidence                  1000  011122344567899999999 676666 6899999999877543  2222    334578999999 


Q ss_pred             CCCEEEEEeC--CCeEEEEeCC--CCe--EEEecCCCCceEEEEEccCCCEEEEEe-CCCcEEEE--eCCCCeEEEEeee
Q 009614          440 DDNYFISGSI--DGKVRIWEVR--RCQ--VVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFY--DIKDNQLYQQNQI  510 (531)
Q Consensus       440 d~~~l~sgs~--Dg~I~Iwd~~--~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iw--d~~~~~l~~~~~~  510 (531)
                      ++++|+++..  ++.|.+|++.  +++  .+........+..++|+|||++|++++ .++.|.+|  |..++++..... 
T Consensus       269 dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-  347 (361)
T 3scy_A          269 DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK-  347 (361)
T ss_dssp             TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC-
T ss_pred             CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce-
Confidence            9998877665  4899999996  444  332222255778999999999998887 57889996  556777654321 


Q ss_pred             eecccccCCCceeeeEEEe
Q 009614          511 CLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       511 ~~~~~kk~~~~~It~l~f~  529 (531)
                            ..+...++.|.|.
T Consensus       348 ------~~~~~~p~~v~~~  360 (361)
T 3scy_A          348 ------DIKVDKPVCLKFV  360 (361)
T ss_dssp             ------CEECSSEEEEEEE
T ss_pred             ------eeeCCCCeEEEEc
Confidence                  1122367888875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.69  E-value=3.6e-15  Score=147.74  Aligned_cols=193  Identities=12%  Similarity=0.132  Sum_probs=142.1

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCC-CEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceec
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEG-SILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      .++++++.++.|.+||.......       ..+. ++.. .+..++|+|+|++| +++..++.|.+||+.+++....+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            47889999999999998754321       2232 2222 47889999999866 4556688999999987764332211


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEE
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL  403 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~  403 (531)
                      ...                                                         ..|...+..++|+|++ +|+
T Consensus        75 ~~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~   97 (337)
T 1pby_B           75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred             CCc---------------------------------------------------------ccccccccceEECCCCCEEE
Confidence            000                                                         0012246688999999 777


Q ss_pred             EEe------------CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec-CC-
Q 009614          404 SSS------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DI-  469 (531)
Q Consensus       404 s~s------------~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~-~~-  469 (531)
                      +++            .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++  ++.|++||+.+++++... .+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~  174 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred             EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence            775            57999999999999888887777788999999 88888777  688999999988765311 11 


Q ss_pred             -----------------------------------------------------------------CCceEEEEEccCCCE
Q 009614          470 -----------------------------------------------------------------REIVSAVCYCPDGKG  484 (531)
Q Consensus       470 -----------------------------------------------------------------~~~v~~v~~spdg~~  484 (531)
                                                                                       ...+..++|+|||++
T Consensus       175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  254 (337)
T 1pby_B          175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR  254 (337)
T ss_dssp             TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCE
Confidence                                                                             112446899999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          485 GIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       485 l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      |+++  ++.|++||+.+++++..+.
T Consensus       255 l~~~--~~~v~~~d~~~~~~~~~~~  277 (337)
T 1pby_B          255 AFGA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             EEEe--CCeEEEEECCCCcCcceec
Confidence            9888  7999999999998876654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=1.5e-15  Score=167.56  Aligned_cols=253  Identities=9%  Similarity=0.069  Sum_probs=163.4

Q ss_pred             ccceeeeCCCCeEEeeecC---------CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          238 HGSATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~d---------g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      +.+++|+|||++|++++.+         +.|.+||+.++...  .+   ....+|...+..++|||||++||.++. +.|
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i  136 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--SL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI  136 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--EC---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE--ec---cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence            6678999999999998764         78899999865431  11   112346666899999999999999886 799


Q ss_pred             EEEEcccCccccceecCCCCC------------------eeEEEeecCCcceeeeeccccc-ccc-----------cccc
Q 009614          309 RVWKVIEHERLDGFDVQDTDP------------------SCLYFTINHLSQLIPIDVDKEK-IDK-----------TKSL  358 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~  358 (531)
                      ++|++.+++...........+                  ..+.|+++....++........ ...           ...+
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY  216 (723)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred             EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence            999998877654433322222                  4566666654433332211100 000           0000


Q ss_pred             ----c--cCCCceEEEeCCccccccCcceeEeec------CCCCeeEEEEcCCC-eEEEEeC----CCcEEEEECCCCeE
Q 009614          359 ----R--KSSDLTCVVLPPKVFRLLEKPLHEFQG------HSSEVLDLSWSKNG-FLLSSSA----DKTVRLWQVGIDRC  421 (531)
Q Consensus       359 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~I~~l~~sp~~-~l~s~s~----Dg~V~lwdl~~~~~  421 (531)
                          .  ......+.+|+.....    ....+..      |...+..++|+|+| +|++.+.    +..|++||+.++++
T Consensus       217 ~~~~~G~~~~~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          217 HYPKAGSENPSISLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             ECCBTTSCCCEEEEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             cCCCCCCCCCeeEEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence                0  0112366777665432    1233333      36778999999999 6655543    36799999999988


Q ss_pred             EEEee--cCCceE----EEEEeeCCCCEEEE--EeCCC------eEEEEe-CCCCe---EEEecCCCCceEE-EEEccCC
Q 009614          422 LRVFS--HNNYVT----SVAFNPVDDNYFIS--GSIDG------KVRIWE-VRRCQ---VVDYTDIREIVSA-VCYCPDG  482 (531)
Q Consensus       422 l~~~~--h~~~V~----sv~fsp~d~~~l~s--gs~Dg------~I~Iwd-~~~~~---~~~~~~~~~~v~~-v~~spdg  482 (531)
                      ...+.  +...+.    .++|+| +++.|+.  +..++      .|.+|| ..+++   ...+......+.. ++|+|||
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg  371 (723)
T 1xfd_A          293 TKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             eEEEEeccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC
Confidence            77653  444443    889999 8886654  45677      577788 45555   4444444444554 6999999


Q ss_pred             CEEEEEeCC---CcEEEEeCCC
Q 009614          483 KGGIVGTMT---GNCRFYDIKD  501 (531)
Q Consensus       483 ~~l~sgs~d---g~I~iwd~~~  501 (531)
                      +.|+..+.+   +.++||++..
T Consensus       372 ~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          372 NKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             TEEEEEESSSCTTCCEEEEECS
T ss_pred             CEEEEEEcCCCCcceEEEEEeC
Confidence            999876665   7899999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.68  E-value=7e-15  Score=161.92  Aligned_cols=243  Identities=14%  Similarity=0.105  Sum_probs=160.6

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCC-----CcccccccccceEEcccCC--------------CEEEEEEccCC
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----QSRELSSLYTGQEFLAHEG--------------SILTMKFSLDG  296 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~-----~~~~~~~~~~~~~l~~H~~--------------~I~~l~fspdg  296 (531)
                      ..+.+++|+|||++|+.+ .++.|++|++..     +....       ....+..              .+.++.|+|||
T Consensus       121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~-------~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg  192 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA-------VTIDGTETLVYGQAVHQREFGIEKGTFWSPKG  192 (706)
T ss_dssp             TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE-------SCSCCBTTEEESSCCGGGCTTCCCSEEECTTS
T ss_pred             ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE-------eccCCCCCeEcccchhhhhcCCCceEEECCCC
Confidence            456678999999999985 689999999986     33211       1112222              25899999999


Q ss_pred             CEEEEEe---------------------------------CCCcEEEEEcccCccccceec--CCCCCeeEEEeecCCcc
Q 009614          297 QYLASGG---------------------------------EDGTVRVWKVIEHERLDGFDV--QDTDPSCLYFTINHLSQ  341 (531)
Q Consensus       297 ~~Lasgs---------------------------------~Dg~I~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  341 (531)
                      ++|++++                                 .+..|.+||+.+++.......  +...+..+.|+++....
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  272 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL  272 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE
Confidence            9999997                                 446799999988775333221  12223344555444322


Q ss_pred             eeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee--cCCC---CeeEEEEcC--CC-eEEEEeCCCcEEE
Q 009614          342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHSS---EVLDLSWSK--NG-FLLSSSADKTVRL  413 (531)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~---~I~~l~~sp--~~-~l~s~s~Dg~V~l  413 (531)
                      ++. ..+.          ......+.+|+.....    ....+.  .+..   .+..++|+|  +| +|++++.|+.++|
T Consensus       273 ~~~-~~~~----------~~~~~~v~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          273 YVA-EVNR----------AQNECKVNAYDAETGR----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             EEE-EECT----------TSCEEEEEEEETTTCC----EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             EEE-EeCC----------CCCeeEEEEEECCCCc----eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            221 1110          1122356666654421    111111  1222   346789999  99 8888889999999


Q ss_pred             EECC-CCeEEEEee-cCCceEE-EEEeeCCCCEEEEEe-CCC----eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614          414 WQVG-IDRCLRVFS-HNNYVTS-VAFNPVDDNYFISGS-IDG----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       414 wdl~-~~~~l~~~~-h~~~V~s-v~fsp~d~~~l~sgs-~Dg----~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                      |++. ++..+..+. +...+.. ++|+| +++.|+.++ .++    .|..||+.+++...+. +...+..++|+|||++|
T Consensus       338 ~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l  415 (706)
T 2z3z_A          338 YLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAI  415 (706)
T ss_dssp             EEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEE
T ss_pred             EEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEE
Confidence            9876 566666664 6667776 79999 887766554 444    6778888877644433 66779999999999998


Q ss_pred             EEEeCC----CcEEEEeCCCCe
Q 009614          486 IVGTMT----GNCRFYDIKDNQ  503 (531)
Q Consensus       486 ~sgs~d----g~I~iwd~~~~~  503 (531)
                      +.+..+    +.|++||+.+++
T Consensus       416 ~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          416 IDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEecCCCCCcEEEEEECCCCe
Confidence            877554    459999999887

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.67  E-value=1.9e-15  Score=173.93  Aligned_cols=195  Identities=9%  Similarity=0.054  Sum_probs=163.0

Q ss_pred             eccccceeee-CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC-CEEEEEEccCCCEEEEEeCCCcEE-EE
Q 009614          235 IDRHGSATLK-PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-SILTMKFSLDGQYLASGGEDGTVR-VW  311 (531)
Q Consensus       235 ~~~~~s~~fs-pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~-iW  311 (531)
                      ...+.+++|+ |+|+++++++ ++.|.+|+......        ..+..|.. .+..++|+ ||+.|++++.++.|. +|
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~  364 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIY  364 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEE
T ss_pred             ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEE
Confidence            3457789999 9999999887 78999999875432        12456777 89999999 999999999887777 88


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      ++.+++.                                                               ..+.+|...+
T Consensus       365 d~~~~~~---------------------------------------------------------------~~l~~~~~~~  381 (1045)
T 1k32_A          365 DYRTGKA---------------------------------------------------------------EKFEENLGNV  381 (1045)
T ss_dssp             ETTTCCE---------------------------------------------------------------EECCCCCCSE
T ss_pred             ECCCCCc---------------------------------------------------------------eEecCCccce
Confidence            8754421                                                               1122566789


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCC----------eEEEEeCC
Q 009614          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG----------KVRIWEVR  459 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg----------~I~Iwd~~  459 (531)
                      ..++|+|+| +|++++.++.|++||+.+++....+ .|...+.+++|+| |+++|++++.++          .|++||+.
T Consensus       382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            999999999 9999999999999999999988887 5888999999999 999998887654          89999999


Q ss_pred             CCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          460 RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       460 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      +++...+..+...+..++|+|||++|++++.++...+|+.....
T Consensus       461 ~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          461 GRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             TTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             CCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence            99977788888889999999999999999998888888876443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.67  E-value=1.7e-15  Score=166.78  Aligned_cols=211  Identities=12%  Similarity=0.101  Sum_probs=150.6

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ..+.+++|+|| ..++.+ .++.|++||+..+..        ..+..|...+.+++|+|||++||++ .|+.|++|++.+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence            34667899999 666555 459999999975432        1344567789999999999999985 679999999987


Q ss_pred             -----CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          316 -----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       316 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                           ++...........                                      +.+..        +  ....+...
T Consensus       151 ~~~~~g~~~~~~~~~~~~--------------------------------------~~~g~--------~--~~~ee~~~  182 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTET--------------------------------------LVYGQ--------A--VHQREFGI  182 (706)
T ss_dssp             TTSCCCCCEESCSCCBTT--------------------------------------EEESS--------C--CGGGCTTC
T ss_pred             ccccCCCcEEeccCCCCC--------------------------------------eEccc--------c--hhhhhcCC
Confidence                 5432211100000                                      00000        0  11223456


Q ss_pred             eeEEEEcCCC-eEEEEe---------------------------------CCCcEEEEECCCCeEEEEe---ecCCceEE
Q 009614          391 VLDLSWSKNG-FLLSSS---------------------------------ADKTVRLWQVGIDRCLRVF---SHNNYVTS  433 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s---------------------------------~Dg~V~lwdl~~~~~l~~~---~h~~~V~s  433 (531)
                      +.++.|+|+| +|++++                                 .+..|++||+.+++.....   .|...+.+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            7899999999 888877                                 4577999999998876655   36678999


Q ss_pred             EEEeeCCCCEEEEEeCCC-----eEEEEeCCCC-eEEEec--CCC---CceEEEEEcc--CCCEEEEEeCCCcEEEEeCC
Q 009614          434 VAFNPVDDNYFISGSIDG-----KVRIWEVRRC-QVVDYT--DIR---EIVSAVCYCP--DGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg-----~I~Iwd~~~~-~~~~~~--~~~---~~v~~v~~sp--dg~~l~sgs~dg~I~iwd~~  500 (531)
                      ++|+| ++++|++++.++     .|++||+.++ ....+.  .+.   ..+..++|+|  ||++|+++..+|.++||.+.
T Consensus       263 ~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          263 LSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             EEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            99999 999999988776     9999999998 443322  222   1346789999  99999999999999999876


Q ss_pred             -CCeEEE
Q 009614          501 -DNQLYQ  506 (531)
Q Consensus       501 -~~~l~~  506 (531)
                       +++.+.
T Consensus       342 ~~~~~~~  348 (706)
T 2z3z_A          342 TTGRLIR  348 (706)
T ss_dssp             TTSCEEE
T ss_pred             CCCCEEE
Confidence             454443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.66  E-value=4.2e-14  Score=142.44  Aligned_cols=256  Identities=13%  Similarity=0.142  Sum_probs=153.2

Q ss_pred             CCCCeEEeee----cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC----CcEEEEEccc-
Q 009614          245 PGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE-  315 (531)
Q Consensus       245 pdg~~lasgs----~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~iWd~~~-  315 (531)
                      +...++++|+    .++.|.+|.+......+.   ....+  |...+..++|+|+|++|++++.+    +.|.+|++.. 
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~---~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESL---PLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEE---EEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEE---Eeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC
Confidence            3344555553    457899998764322221   11222  66778889999999999999886    8999999876 


Q ss_pred             -Ccc--ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE--e------
Q 009614          316 -HER--LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE--F------  384 (531)
Q Consensus       316 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------  384 (531)
                       ++.  +.........+..+.+   ....++..              ...++.+.+|+.............  .      
T Consensus        86 ~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~--------------~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~  148 (361)
T 3scy_A           86 KGTLHLLNTQKTMGADPCYLTT---NGKNIVTA--------------NYSGGSITVFPIGQDGALLPASDVIEFKGSGPD  148 (361)
T ss_dssp             TTEEEEEEEEECSSSCEEEEEE---CSSEEEEE--------------ETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred             CCcEEEeeEeccCCCCcEEEEE---CCCEEEEE--------------ECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence             332  1122212222222222   21222221              223445555554321111111111  1      


Q ss_pred             --ecCCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCe-------E-------EEEeecCCceEEEEEeeCCCCEEEE
Q 009614          385 --QGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDR-------C-------LRVFSHNNYVTSVAFNPVDDNYFIS  446 (531)
Q Consensus       385 --~~h~~~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~~-------~-------l~~~~h~~~V~sv~fsp~d~~~l~s  446 (531)
                        ..+...+.+++|+|+| +|++++ .++.|.+|++....       .       .....+...+..++|+| +++++++
T Consensus       149 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v  227 (361)
T 3scy_A          149 KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYL  227 (361)
T ss_dssp             TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEE
T ss_pred             ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEE
Confidence              1123346889999999 555544 58999999987543       1       12223556788999999 9988877


Q ss_pred             Ee-CCCeEEEEeCCCCeEEE---e---cCCCCceEEEEEccCCCEEEEEeCC--CcEEEEeCC--CCeEEEEeeeeeccc
Q 009614          447 GS-IDGKVRIWEVRRCQVVD---Y---TDIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIK--DNQLYQQNQICLQGK  515 (531)
Q Consensus       447 gs-~Dg~I~Iwd~~~~~~~~---~---~~~~~~v~~v~~spdg~~l~sgs~d--g~I~iwd~~--~~~l~~~~~~~~~~~  515 (531)
                      ++ .++.|.+|++.++++..   .   ..+...+..++|+|||++|+++..+  +.|.+|++.  ++++.....+..   
T Consensus       228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---  304 (361)
T 3scy_A          228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---  304 (361)
T ss_dssp             EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---
T ss_pred             EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---
Confidence            76 68999999999876532   1   2233557899999999998776654  889999995  555433222221   


Q ss_pred             ccCCCceeeeEEEee
Q 009614          516 KKLPGKRITGFQVVK  530 (531)
Q Consensus       516 kk~~~~~It~l~f~p  530 (531)
                          +..+.+++|+|
T Consensus       305 ----g~~~~~~~~sp  315 (361)
T 3scy_A          305 ----GIHPRNFIITP  315 (361)
T ss_dssp             ----SSCCCEEEECT
T ss_pred             ----CCCCceEEECC
Confidence                23455666665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.65  E-value=8.3e-15  Score=148.77  Aligned_cols=252  Identities=10%  Similarity=-0.004  Sum_probs=157.9

Q ss_pred             eeeeCCCCeEEeeec-CC--eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          241 ATLKPGDHELTLGQR-MR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       241 ~~fspdg~~lasgs~-dg--~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      .+|+|||++|+.++. ++  .|.+|+.......       +...+|...+..+.|+|||+.|+.++.++.|++||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-------ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-------EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            689999999998876 67  4777887654322       2234555556677899999999999999999999999887


Q ss_pred             cccceecCCCCCeeEEEeecCCcceee-eecccccc-------ccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIP-IDVDKEKI-------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      .......+........+..+.....+. ........       .............+++++....     ....+..+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~~  188 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-----ESTVILQENQ  188 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-----CEEEEEEESS
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-----ceEEeecCCc
Confidence            654444333322222232222222222 11110000       0000122344566777776542     2344555677


Q ss_pred             CeeEEEEcC-CC-eEEEEeCC------CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeC-CC----eEE
Q 009614          390 EVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSI-DG----KVR  454 (531)
Q Consensus       390 ~I~~l~~sp-~~-~l~s~s~D------g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~-Dg----~I~  454 (531)
                      .+..++|+| +| .|+.+..+      ..|.++|+.++.......+.  ..+..++|+| +++.|+..+. ++    .|+
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEE
Confidence            899999999 88 77666653      37888888776554444444  3588899999 8887655443 22    399


Q ss_pred             EEeCCCCeEEEecCCCCc------eEEEEEccCCCEEEEE---------eCCCcEEEEeCCCCeEE
Q 009614          455 IWEVRRCQVVDYTDIREI------VSAVCYCPDGKGGIVG---------TMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       455 Iwd~~~~~~~~~~~~~~~------v~~v~~spdg~~l~sg---------s~dg~I~iwd~~~~~l~  505 (531)
                      +||+.+++...+......      ...++|+|||+.|+..         ..+..|++||+.++++.
T Consensus       268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred             EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence            999999875433222110      1123799999988764         44668999999988764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.62  E-value=2.1e-14  Score=145.25  Aligned_cols=243  Identities=11%  Similarity=0.049  Sum_probs=153.4

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCC-CCcccccccccceEEcccCCCEEEEEEccCCCE--EEEEe----------
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY--LASGG----------  303 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~-~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~--Lasgs----------  303 (531)
                      .+..++|+|+|++|++++.+ .|.+|++. .+...  .   ......+ +.+.+++|+|+|++  ++++.          
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--~---~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--H---EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--E---EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--E---eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            34568999999999988887 99999986 33211  0   0011111 23556899999994  55553          


Q ss_pred             ---CCCcEEEEEccc-Cccccceec----CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc-cc
Q 009614          304 ---EDGTVRVWKVIE-HERLDGFDV----QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK-VF  374 (531)
Q Consensus       304 ---~Dg~I~iWd~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  374 (531)
                         .+|.+.+|++.. ++....+..    ....+..+.+.++... ++..              ...+..+.+|+.. ..
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~--------------~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSA--------------DLTANKLWTHRKLASG  178 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEE--------------ETTTTEEEEEEECTTS
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEE--------------cCCCCEEEEEEECCCC
Confidence               689999999973 544333321    1223444444444321 1111              1123455566543 21


Q ss_pred             cccCcceeEee--cCCCCeeEEEEcCCC-eEEEEe-CCCcEEEEECC--CCeEE---EEee--------cCC------ce
Q 009614          375 RLLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG--IDRCL---RVFS--------HNN------YV  431 (531)
Q Consensus       375 ~~~~~~~~~~~--~h~~~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~--~~~~l---~~~~--------h~~------~V  431 (531)
                      .+  ..+..+.  .|...+..++|+|+| +|++++ .++.|.+|++.  +++..   ..+.        |..      .+
T Consensus       179 ~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          179 EV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             CE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             CE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            11  1122233  245678999999999 777666 47899999875  45542   1221        121      58


Q ss_pred             EEEE-EeeCCCCEEEEEeCC-C-----eEEEEeCC-CCeEEE----ecCCCCceEEEEEcc---CCCEEEEEeCC-CcEE
Q 009614          432 TSVA-FNPVDDNYFISGSID-G-----KVRIWEVR-RCQVVD----YTDIREIVSAVCYCP---DGKGGIVGTMT-GNCR  495 (531)
Q Consensus       432 ~sv~-fsp~d~~~l~sgs~D-g-----~I~Iwd~~-~~~~~~----~~~~~~~v~~v~~sp---dg~~l~sgs~d-g~I~  495 (531)
                      ..++ |+| ++++|+++..+ .     .|.+|++. ++++..    ...+...+..++|+|   ||++|++++.+ +.|+
T Consensus       257 ~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          257 ADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             ccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            8999 999 99988776543 2     89999996 566543    222445567899999   89999999875 8999


Q ss_pred             EEeCCCCeE
Q 009614          496 FYDIKDNQL  504 (531)
Q Consensus       496 iwd~~~~~l  504 (531)
                      +|++....+
T Consensus       336 v~~~~~~~l  344 (365)
T 1jof_A          336 IYRWKDEFL  344 (365)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEchhhC
Confidence            999987644

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.61  E-value=2e-14  Score=154.81  Aligned_cols=202  Identities=10%  Similarity=0.037  Sum_probs=135.6

Q ss_pred             cCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcccCccccceecCC-CCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614          283 HEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (531)
Q Consensus       283 H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (531)
                      +..+|++++|+|||++||+++. ||+++||++.+++.. .+..+. ..+....|+++  ..++......          +
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd--~~l~~~~~~~----------g   86 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG--RVILVRDVSK----------G   86 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS--EEEEEEECST----------T
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC--eEEEEeccCC----------C
Confidence            3568999999999999999887 999999998665533 222222 22233333322  1111111100          0


Q ss_pred             CCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEee
Q 009614          361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (531)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp  438 (531)
                      .....++.++.  +.. .... .+.. ...+...+|+|++  .+++++.++.+.+||+.+++......+..  .+++|+|
T Consensus        87 ~~~~~l~~~~~--~~~-g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp  159 (582)
T 3o4h_A           87 AEQHALFKVNT--SRP-GEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI  159 (582)
T ss_dssp             SCCEEEEEEET--TST-TCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE
T ss_pred             CcceEEEEEec--cCC-Cccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC
Confidence            01112222222  000 0111 1221 2234466788877  44444555556699999998777766555  8899999


Q ss_pred             CCCCEEEEEeCC----CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeEE
Q 009614          439 VDDNYFISGSID----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLY  505 (531)
Q Consensus       439 ~d~~~l~sgs~D----g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~~~~~l~  505 (531)
                       |+++|++++.+    +.|++||+.+++...+..+...+..++|+|||++|+++..+|  .|++||+.++++.
T Consensus       160 -DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          160 -RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             -ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             -CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence             99999988877    789999999998888888889999999999999999888888  8999999988876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=8.7e-14  Score=139.22  Aligned_cols=210  Identities=11%  Similarity=0.160  Sum_probs=137.1

Q ss_pred             cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcccCccccceecCCCCCee
Q 009614          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSC  331 (531)
Q Consensus       255 ~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~  331 (531)
                      .++.|.+|.+......+...    ....+...+..++|+|+|+ |++++.   ++.|.+|++.++...            
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------   76 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------   76 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred             CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence            35678888876432222111    2234556788899999999 555544   689999998655420            


Q ss_pred             EEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe-CCC
Q 009614          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK  409 (531)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s-~Dg  409 (531)
                                                                      .+..+..+...+..++|+|++ +|++++ .++
T Consensus        77 ------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~  108 (347)
T 3hfq_A           77 ------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYHKG  108 (347)
T ss_dssp             ------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred             ------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence                                                            122233456678899999999 777777 789


Q ss_pred             cEEEEECCC-C--eEEEEeecC----------CceEEEEEeeCCCCEEEEEeCCCeEEEEeCC-CCeEEE----ecCCCC
Q 009614          410 TVRLWQVGI-D--RCLRVFSHN----------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVD----YTDIRE  471 (531)
Q Consensus       410 ~V~lwdl~~-~--~~l~~~~h~----------~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~-~~~~~~----~~~~~~  471 (531)
                      .|.+|++.. +  ..+..+.+.          ..+.+++|+| +++++++...++.|++|++. ++++..    ......
T Consensus       109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            999999963 2  333333322          2488999999 88877777778999999998 554432    122334


Q ss_pred             ceEEEEEccCCCEEEE-EeCCCcEEEEeCCC--CeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          472 IVSAVCYCPDGKGGIV-GTMTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       472 ~v~~v~~spdg~~l~s-gs~dg~I~iwd~~~--~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .+..++|+|||++|++ +..++.|++|++..  +++.....+............+.+++|+|
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence            6788999999997666 45688999999874  65533222221111111124567777765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=164.55  Aligned_cols=193  Identities=12%  Similarity=0.115  Sum_probs=142.0

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC---CEEEEEEccCCCEEEEEeC---------CCc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGE---------DGT  307 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~---------Dg~  307 (531)
                      .++|+|+|.+++++ .++.|++|+...+...       +.+.+|..   .|.+++|||||++||+++.         ++.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            57999999666555 6999999999865432       22334433   4899999999999999876         789


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |++||+.+++.+...                                                            .+   
T Consensus        92 i~~~d~~~g~~~~~~------------------------------------------------------------~l---  108 (719)
T 1z68_A           92 YYIYDLSNGEFVRGN------------------------------------------------------------EL---  108 (719)
T ss_dssp             EEEEETTTTEECCSS------------------------------------------------------------CC---
T ss_pred             EEEEECCCCccccce------------------------------------------------------------ec---
Confidence            999999877631100                                                            00   


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCce-----------------EEEEEeeCCCCEEEEE
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYFISG  447 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V-----------------~sv~fsp~d~~~l~sg  447 (531)
                      ...+..++|+|+| .|+.+. ++.|++||+.+++......  +...|                 .+++|+| |+++|+++
T Consensus       109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~  186 (719)
T 1z68_A          109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYA  186 (719)
T ss_dssp             CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEE
T ss_pred             CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEE
Confidence            1347789999999 777775 7899999999887765432  22222                 4899999 99999998


Q ss_pred             eCCC----------------------------------eEEEEeCCCCeEE---E------ecCCCCceEEEEEccCCCE
Q 009614          448 SIDG----------------------------------KVRIWEVRRCQVV---D------YTDIREIVSAVCYCPDGKG  484 (531)
Q Consensus       448 s~Dg----------------------------------~I~Iwd~~~~~~~---~------~~~~~~~v~~v~~spdg~~  484 (531)
                      +.|.                                  .|++||+.+++..   .      +..+...+..++|+||+++
T Consensus       187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~  266 (719)
T 1z68_A          187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV  266 (719)
T ss_dssp             EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred             EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence            8653                                  7899999987642   2      2357778999999999887


Q ss_pred             EEEEeCC----CcEEEEe----CCCCeEE
Q 009614          485 GIVGTMT----GNCRFYD----IKDNQLY  505 (531)
Q Consensus       485 l~sgs~d----g~I~iwd----~~~~~l~  505 (531)
                      +++....    ..|++||    +.+++..
T Consensus       267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          267 CLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             EEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             EEEEeccccCeEEEEEEcccCCCCCCceE
Confidence            7775433    2488899    7777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=1.4e-14  Score=160.77  Aligned_cols=192  Identities=10%  Similarity=0.073  Sum_probs=141.7

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCC-----CEEEEEEccCCCEEEEEeCC-------
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGED-------  305 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~-----~I~~l~fspdg~~Lasgs~D-------  305 (531)
                      ..++.|+|||.+++++  ++.|++|++.++...       +.+.+|..     ....+.|||||++|+.++.+       
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceE-------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence            3468999999999887  899999999866532       23445543     33458899999999999876       


Q ss_pred             --CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE
Q 009614          306 --GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE  383 (531)
Q Consensus       306 --g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (531)
                        +.+.+||+.+++..                                                               .
T Consensus        90 ~~~~~~~~d~~~~~~~---------------------------------------------------------------~  106 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLI---------------------------------------------------------------T  106 (740)
T ss_dssp             EEEEEEEEETTTTEEC---------------------------------------------------------------C
T ss_pred             cceEEEEEECCCCcEE---------------------------------------------------------------E
Confidence              45568888776521                                                               1


Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCce-----------------EEEEEeeCCCCE
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNY  443 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V-----------------~sv~fsp~d~~~  443 (531)
                      +..|.+.+...+|+|+| .|+.+ .++.|++|++.++...+...  +...+                 ..+.|+| |+++
T Consensus       107 l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~  184 (740)
T 4a5s_A          107 EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTF  184 (740)
T ss_dssp             SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSE
T ss_pred             cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCE
Confidence            23456678999999999 77776 46899999999887655332  22222                 3589999 9999


Q ss_pred             EEEEeCCC------------------------------------eEEEEeCCC---C---eEEEecC------CCCceEE
Q 009614          444 FISGSIDG------------------------------------KVRIWEVRR---C---QVVDYTD------IREIVSA  475 (531)
Q Consensus       444 l~sgs~Dg------------------------------------~I~Iwd~~~---~---~~~~~~~------~~~~v~~  475 (531)
                      ||.++.|.                                    +|+|||+.+   +   +...+..      +...+..
T Consensus       185 la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  264 (740)
T 4a5s_A          185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD  264 (740)
T ss_dssp             EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred             EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence            99875332                                    588899998   7   5555443      6778999


Q ss_pred             EEEccCCCEEEEEeC----CCcEEEEeCCCCe
Q 009614          476 VCYCPDGKGGIVGTM----TGNCRFYDIKDNQ  503 (531)
Q Consensus       476 v~~spdg~~l~sgs~----dg~I~iwd~~~~~  503 (531)
                      ++|+|||+.++....    +..|++||+.+++
T Consensus       265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          265 VTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            999999997766543    3369999999887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=6.1e-13  Score=129.24  Aligned_cols=242  Identities=10%  Similarity=0.125  Sum_probs=158.2

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE-ccCCCEEEEEeC-CCcEEEE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF-SLDGQYLASGGE-DGTVRVW  311 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~-Dg~I~iW  311 (531)
                      +.....++++++++.++++...++.|.+|+......  ..+.....-.+|...+.++++ .++++++++... ++.|.+|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            334556789999999888888899999999763221  111000001235567899999 467776666643 8899999


Q ss_pred             EcccCccccceecCC-CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee--cCC
Q 009614          312 KVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHS  388 (531)
Q Consensus       312 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~  388 (531)
                      + .+++.+..+.... ..+..+.+.++  ..++.              ....+..+.+|+...     +.+..+.  .+.
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v--------------~~~~~~~i~~~~~~g-----~~~~~~~~~~~~  163 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNK--GRIIV--------------VECKVMRVIIFDQNG-----NVLHKFGCSKHL  163 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTT--SCEEE--------------EETTTTEEEEECTTS-----CEEEEEECTTTC
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCC--CCEEE--------------EECCCCEEEEEcCCC-----CEEEEeCCCCcc
Confidence            9 5565554443221 12233333222  22222              222344566666432     2233332  345


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeec---CCceEEEEEeeCCCCEEEEEeCCC-eEEEEeCCCCeE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---NNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQV  463 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h---~~~V~sv~fsp~d~~~l~sgs~Dg-~I~Iwd~~~~~~  463 (531)
                      ..+..|++++++ ++++...++.|++||. .++.+..+..   ...+..|+++| +++++++...++ .|.+||.....+
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~  241 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLI  241 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEE
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEE
Confidence            678999999999 6666677899999997 4556666643   36789999999 889888888886 999999764443


Q ss_pred             EEecCC--CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          464 VDYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       464 ~~~~~~--~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      ..+..+  ...+.+++++|+|+++++ +.++.|++|++...
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          242 SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            333332  234789999999987666 67999999998653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.57  E-value=1e-13  Score=137.96  Aligned_cols=196  Identities=10%  Similarity=0.083  Sum_probs=136.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC-CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEE
Q 009614          289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV  367 (531)
Q Consensus       289 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (531)
                      ++++++++.++++++.++.|.+||+.+++....+.... ..+..+.+.++... ++              +....++.+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-~~--------------v~~~~~~~i~   68 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT-AY--------------VLNNHYGDIY   68 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE-EE--------------EEETTTTEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCE-EE--------------EEeCCCCcEE
Confidence            45688889999999999999999999988777766543 13444444443321 11              1223455677


Q ss_pred             EeCCccccccCcceeEeecC------CCCeeEEEEcCCC-eEEEEeCC------------CcEEEEECCCC---eEEEEe
Q 009614          368 VLPPKVFRLLEKPLHEFQGH------SSEVLDLSWSKNG-FLLSSSAD------------KTVRLWQVGID---RCLRVF  425 (531)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~h------~~~I~~l~~sp~~-~l~s~s~D------------g~V~lwdl~~~---~~l~~~  425 (531)
                      +|+.....    .+..+..+      ...+..++|+|+| +|++++.+            +.|.+||+.++   +.+..+
T Consensus        69 ~~d~~t~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           69 GIDLDTCK----NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             EEETTTTE----EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             EEeCCCCc----EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence            77765432    23333322      2347899999999 78877755            89999999884   344556


Q ss_pred             ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC-----------------------------------
Q 009614          426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-----------------------------------  470 (531)
Q Consensus       426 ~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~-----------------------------------  470 (531)
                      .+...+.+++|+| +++ +++++.  .|.+||+.+++.+......                                   
T Consensus       145 ~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (349)
T 1jmx_B          145 PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  220 (349)
T ss_dssp             ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             cCCCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence            6667799999999 888 555543  4999999988766422111                                   


Q ss_pred             ----------------------------------CceEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          471 ----------------------------------EIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       471 ----------------------------------~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                                                        ..+..++|+| ||++++++  ++.|++||+.+++++..+.
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  292 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN  292 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence                                              1345677889 99999888  8899999999998877654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=3.7e-13  Score=136.59  Aligned_cols=253  Identities=8%  Similarity=-0.037  Sum_probs=152.6

Q ss_pred             cccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCC-EEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          237 RHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .+..++|+|||++|+.....   ..|.+|+.......        .+..+... ...+.|+|||++|+.++.++.|.+|+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d  108 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD  108 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence            35668999999998876443   47888887754321        12222223 33478999999999999999999999


Q ss_pred             cccCccccceecCCCCCee-EEEeecCCccee-------eeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          313 VIEHERLDGFDVQDTDPSC-LYFTINHLSQLI-------PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      +.+++.......+...... ..+.........       .+..+...+.............+++|+.....     ...+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~~  183 (396)
T 3c5m_A          109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-----LEVI  183 (396)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-----EEEE
T ss_pred             CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-----EEee
Confidence            9887654333322210000 000000000000       00000000000000011345567777654422     2333


Q ss_pred             ecCCCCeeEEEEcC-CC-eEEEEeCC------CcEEEEECCCCeEEEEeec--CCceEEEEEeeCCCCEEEEEeCC----
Q 009614          385 QGHSSEVLDLSWSK-NG-FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID----  450 (531)
Q Consensus       385 ~~h~~~I~~l~~sp-~~-~l~s~s~D------g~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs~D----  450 (531)
                      ..+...+..+.|+| ++ .|+..+.+      ..|.+||+.+++......+  ...+..++|+| ++++|+.++.+    
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQT  262 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTC
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCc
Confidence            35677899999999 67 56665543      4688999877654444443  23588899999 88877776544    


Q ss_pred             -CeEEEEeCCCCeEEEecCCCCceEEEEEcc-CCCEEEEEe----------------CCCcEEEEeCCCCeEE
Q 009614          451 -GKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGT----------------MTGNCRFYDIKDNQLY  505 (531)
Q Consensus       451 -g~I~Iwd~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs----------------~dg~I~iwd~~~~~l~  505 (531)
                       +.|++||+.+++...+..... .. +.|+| ||++|++++                .++.|++||+.++++.
T Consensus       263 ~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          263 DRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             CEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred             cceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence             459999999887654433222 33 89999 999888765                2468999999888753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.53  E-value=6.6e-12  Score=124.98  Aligned_cols=238  Identities=11%  Similarity=0.081  Sum_probs=161.6

Q ss_pred             ccccceeeeCCCCeEEeeecC------------------------CeEEEEeCCCCcccccccccceEE-cccCCCEEEE
Q 009614          236 DRHGSATLKPGDHELTLGQRM------------------------RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTM  290 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~d------------------------g~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l  290 (531)
                      ..+.+++++|+|+++++...+                        +.|.+||..++...       ..+ .++-.....|
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------QSSGKNLFYLPHGL   96 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------EEECTTTCSSEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------eccCCCccCCceEE
Confidence            456678999999999888777                        47999988654421       112 2445678999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcccCc-cccceec---------CCCCCeeEEEeecCCcceeeeecccccccccccccc
Q 009614          291 KFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDV---------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK  360 (531)
Q Consensus       291 ~fspdg~~Lasgs~Dg~I~iWd~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (531)
                      +++++|+++++...++.|++|+..... .+..+..         ....+..+.+.+. ...++..+.             
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~-------------  162 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDG-------------  162 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEEC-------------
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeC-------------
Confidence            999999988888889999999975442 3333311         1112223333221 122222211             


Q ss_pred             CCCceEEEeCCccccccCcceeEee----------cCCCCeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEee--
Q 009614          361 SSDLTCVVLPPKVFRLLEKPLHEFQ----------GHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS--  426 (531)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--  426 (531)
                      ..+..+.+|+..     ...+..+.          ++......|+++|+ + ++++...++.|++||..+++.+..+.  
T Consensus       163 ~~~~~I~~~~~~-----g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          163 YCNSRIVQFSPS-----GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             SSCCEEEEECTT-----SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             CCCCeEEEEcCC-----CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            134455555532     12222222          12334889999998 6 67777788999999999899988884  


Q ss_pred             -cCCceEEEEEeeCCCCEEEEEe-------CCCeEEEEeCCCCeEEEec----CCCCceEEEEEccCCCEEEEEeCCCcE
Q 009614          427 -HNNYVTSVAFNPVDDNYFISGS-------IDGKVRIWEVRRCQVVDYT----DIREIVSAVCYCPDGKGGIVGTMTGNC  494 (531)
Q Consensus       427 -h~~~V~sv~fsp~d~~~l~sgs-------~Dg~I~Iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~dg~I  494 (531)
                       +...+..++|+|  +..+++.+       .+..|++|++.+++++...    .+...+..|+++|+|.++++...++.|
T Consensus       238 ~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I  315 (329)
T 3fvz_A          238 SFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV  315 (329)
T ss_dssp             TTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred             ccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence             556788999998  33333332       3458999999999988653    566679999999999888888889999


Q ss_pred             EEEeCCC
Q 009614          495 RFYDIKD  501 (531)
Q Consensus       495 ~iwd~~~  501 (531)
                      ++|++..
T Consensus       316 ~~~~~~~  322 (329)
T 3fvz_A          316 WKFTLTE  322 (329)
T ss_dssp             EEEEEEE
T ss_pred             EEEeCCc
Confidence            9999764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.52  E-value=2.2e-13  Score=150.35  Aligned_cols=253  Identities=10%  Similarity=0.022  Sum_probs=160.6

Q ss_pred             ccceeeeCCCCeEEeeec---------CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcE
Q 009614          238 HGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV  308 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~---------dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I  308 (531)
                      +.+++|+|||++|+.++.         ++.|++||+.++.....  .   .+   ...+..++|||||++||.+. |+.|
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~--~---~l---~~~~~~~~~SPDG~~la~~~-~~~i  132 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG--N---EL---PRPIQYLCWSPVGSKLAYVY-QNNI  132 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--S---CC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc--e---ec---CcccccceECCCCCEEEEEE-CCeE
Confidence            557899999999998876         78999999986543100  0   11   24688999999999999986 7899


Q ss_pred             EEEEcccCccccceecCCC------------------CCeeEEEeecCCcceeeeecccc-ccc---------------c
Q 009614          309 RVWKVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKE-KID---------------K  354 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~  354 (531)
                      ++|++.+++..........                  ....+.|+++....++....... ...               .
T Consensus       133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~  212 (719)
T 1z68_A          133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI  212 (719)
T ss_dssp             EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred             EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence            9999988765432211111                  11356666665443332221110 000               0


Q ss_pred             ccccc--cCCCceEEEeCCcccccc----CcceeEeecCCCCeeEEEEcCCC-eEEEEeCC----CcEEEEE----CCCC
Q 009614          355 TKSLR--KSSDLTCVVLPPKVFRLL----EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQ----VGID  419 (531)
Q Consensus       355 ~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D----g~V~lwd----l~~~  419 (531)
                      .+...  ......+.+|+.......    -.....+.+|...+..++|+|++ ++++....    ..|.+||    +.++
T Consensus       213 ~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          213 PYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             ECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             cCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence            00000  112335667776543321    00002244688889999999999 55554332    2488999    8887


Q ss_pred             eEEEEe-----ecCCceE-----EEEEeeCCCCEEEE--EeCCC--eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614          420 RCLRVF-----SHNNYVT-----SVAFNPVDDNYFIS--GSIDG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       420 ~~l~~~-----~h~~~V~-----sv~fsp~d~~~l~s--gs~Dg--~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                      ++...+     .|...+.     .+.|+| +++.|+.  +..+|  .|.+||+.+++...+..+...+..+.+. +++.|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i  370 (719)
T 1z68_A          293 DCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSL  370 (719)
T ss_dssp             ECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEE
T ss_pred             ceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEE
Confidence            766555     3566666     889999 8875443  44555  6788888887766666666678887777 88888


Q ss_pred             EEEeCC-----CcEEEEeCCC
Q 009614          486 IVGTMT-----GNCRFYDIKD  501 (531)
Q Consensus       486 ~sgs~d-----g~I~iwd~~~  501 (531)
                      +..+.+     +.+++|.+..
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEecCCCCCceEEEEEEeC
Confidence            777665     7888998753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.52  E-value=2.1e-12  Score=130.47  Aligned_cols=255  Identities=11%  Similarity=0.019  Sum_probs=153.0

Q ss_pred             ceeeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccceEEcc------cCCCEEEEEEccCCCEEEEEe
Q 009614          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA------HEGSILTMKFSLDGQYLASGG  303 (531)
Q Consensus       240 s~~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~~~l~~------H~~~I~~l~fspdg~~Lasgs  303 (531)
                      .++|+|||++++++.          .++.|.+||..+...       .+++..      +......++|+|||++|+++.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n  126 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN  126 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------EEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence            589999999998875          367899999874332       222221      234567899999999999886


Q ss_pred             C--CCcEEEEEcccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc-cccc--
Q 009614          304 E--DGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLL--  377 (531)
Q Consensus       304 ~--Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  377 (531)
                      .  +++|.+||+.+++.+.. +.....  ..+.+.+.....++..               +.++.+..+.... ....  
T Consensus       127 ~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~---------------~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          127 ASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMTI---------------CGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             ESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEEE---------------ETTSSEEEEEECTTSSEEEE
T ss_pred             CCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEEE---------------CCCCcEEEEEECCCCcEeee
Confidence            4  68999999999887665 443211  0011222111111111               1122222211100 0000  


Q ss_pred             CcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEeec-----------CCceEEEEEeeCCCCE
Q 009614          378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH-----------NNYVTSVAFNPVDDNY  443 (531)
Q Consensus       378 ~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~h-----------~~~V~sv~fsp~d~~~  443 (531)
                      ......+..+..++ .+..++++ .++..+.++.|.++|+....  .+..+..           .....-++|+| +++.
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~  267 (361)
T 2oiz_A          190 SRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGR  267 (361)
T ss_dssp             EECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTE
T ss_pred             ccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCe
Confidence            00001111222222 23335666 66667788999999997553  2222210           11112378999 7776


Q ss_pred             EEEEeC-----------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEEEEeee
Q 009614          444 FISGSI-----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN--QLYQQNQI  510 (531)
Q Consensus       444 l~sgs~-----------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~--~l~~~~~~  510 (531)
                      ++++..           .+.|.+||+.+++++....... +..++|+|||++|++++. +.|.+||+.++  +++..+. 
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-  344 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-  344 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-
Confidence            666543           3489999999999886443334 999999999999999887 99999999999  7765431 


Q ss_pred             eecccccCCCceeeeEEEee
Q 009614          511 CLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       511 ~~~~~kk~~~~~It~l~f~p  530 (531)
                             ..++.-.+|.|.|
T Consensus       345 -------~~G~~P~~~~~~p  357 (361)
T 2oiz_A          345 -------GAAEASLQVQFHP  357 (361)
T ss_dssp             -------TSCSSEEEEEECC
T ss_pred             -------cCCCCcEEEEecC
Confidence                   1234456677766

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.50  E-value=1.6e-13  Score=152.21  Aligned_cols=203  Identities=12%  Similarity=0.123  Sum_probs=131.9

Q ss_pred             ceeeeCCCCeEEeeecC---------CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          240 SATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       240 s~~fspdg~~lasgs~d---------g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      ..+|||||++|+.++.+         +.+.+||+.++...        .+..|.+.+..++|||||+.||.+. |+.|.+
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~  136 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV  136 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--------EcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence            36899999999998876         56679999865432        2456778899999999999999884 689999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC--
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS--  388 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--  388 (531)
                      |++.++...+ +.......                                                    ..+.++.  
T Consensus       137 ~~~~~~~~~~-lt~~g~~~----------------------------------------------------~~~~g~~~~  163 (740)
T 4a5s_A          137 KIEPNLPSYR-ITWTGKED----------------------------------------------------IIYNGITDW  163 (740)
T ss_dssp             ESSTTSCCEE-CCSCCBTT----------------------------------------------------TEEESBCCH
T ss_pred             EECCCCceEE-EcCCCCcc----------------------------------------------------ceecCcccc
Confidence            9998776322 11000000                                                    0001111  


Q ss_pred             -------CCeeEEEEcCCC-eEEEEeC------------------------------------CCcEEEEECCC---C--
Q 009614          389 -------SEVLDLSWSKNG-FLLSSSA------------------------------------DKTVRLWQVGI---D--  419 (531)
Q Consensus       389 -------~~I~~l~~sp~~-~l~s~s~------------------------------------Dg~V~lwdl~~---~--  419 (531)
                             +....+.|+|+| .|+.++.                                    ..+|++||+.+   +  
T Consensus       164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                   111234444444 3433321                                    12588999998   7  


Q ss_pred             -eEEEEee------cCCceEEEEEeeCCCCEEEEEeC----CCeEEEEeCCCCe----EE---Ee--cCCCCceE-----
Q 009614          420 -RCLRVFS------HNNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRCQ----VV---DY--TDIREIVS-----  474 (531)
Q Consensus       420 -~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~----Dg~I~Iwd~~~~~----~~---~~--~~~~~~v~-----  474 (531)
                       +......      |...+..++|+| |+++++....    +..|++||+.+++    +.   .+  ..+...|.     
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence             4444332      777899999999 8886665432    3479999998876    22   11  33444443     


Q ss_pred             EEEEccCCCEEE-EEeC-CC--cEEEEeCCCCeEE
Q 009614          475 AVCYCPDGKGGI-VGTM-TG--NCRFYDIKDNQLY  505 (531)
Q Consensus       475 ~v~~spdg~~l~-sgs~-dg--~I~iwd~~~~~l~  505 (531)
                      .+.|+|||+.|+ ..+. +|  .|++||+.+++..
T Consensus       323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            688999999887 6654 44  5888888776543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.48  E-value=1.7e-11  Score=119.72  Aligned_cols=246  Identities=11%  Similarity=0.029  Sum_probs=158.7

Q ss_pred             ccceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          238 HGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       238 ~~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      ..+++|+|+|+ +++++..++.|..|+.... .        +.+..+...+.+++++++|+++++...++.|.+||..++
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            34689999998 7788888999999998754 1        234557778999999999998887777889999999777


Q ss_pred             ccccceecC----CCCCeeEEEeecCCcceeeeecccccccc---ccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          317 ERLDGFDVQ----DTDPSCLYFTINHLSQLIPIDVDKEKIDK---TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       317 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +........    ...+..+.+.+  .+.++..+........   .........+.++.++.. .     .+..+..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----~~~~~~~~~~  172 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----TLSAPIRDRV  172 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----CEEEEECCCS
T ss_pred             cEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC-C-----CEEEeecCCC
Confidence            643221111    11122233332  2223322110000000   000001112345555543 1     1333455667


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECC-CCeE---EEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRC---LRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~-~~~~---l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      ....++|+|++ .|++.+.++.|.+|++. ++..   ...+. +...+.+|++++ +++++++.  ++.|.+||......
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEE
Confidence            78899999999 66777788999999997 4544   23332 445677899999 88877666  88999999974433


Q ss_pred             EEecCCCCceEEEEE-ccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          464 VDYTDIREIVSAVCY-CPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       464 ~~~~~~~~~v~~v~~-spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ..+..+.. +++++| .|+++.|++++.++ +.-+++.+.++.
T Consensus       250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            34555555 899999 68999999988764 556677666553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=1e-12  Score=143.42  Aligned_cols=210  Identities=11%  Similarity=0.014  Sum_probs=143.1

Q ss_pred             ceeeeccccceeeeCCCCeEEee--ecCCeEEEEeCCCCcccccccccceEEcccCCCEE---------EEEEc--cCCC
Q 009614          231 MARIIDRHGSATLKPGDHELTLG--QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL---------TMKFS--LDGQ  297 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasg--s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~---------~l~fs--pdg~  297 (531)
                      +..+...+..+++++++-+++.+  ..++...||.......       .+.+..|...+.         ...|+  |||+
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-------EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-------EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-------cceeCCCCccccccccccCCccceeeeecCCC
Confidence            33445566678899887666666  5688999998632211       123445555555         55665  9999


Q ss_pred             E-EEEEeC-CCcEEEEEcc--c-CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCc
Q 009614          298 Y-LASGGE-DGTVRVWKVI--E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK  372 (531)
Q Consensus       298 ~-Lasgs~-Dg~I~iWd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (531)
                      + |+.++. +..|.+|++.  . +. ...+..                                                
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~------------------------------------------------  122 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTP------------------------------------------------  122 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCC-CEECSC------------------------------------------------
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCC-CEeccC------------------------------------------------
Confidence            8 776654 4555555543  1 21 110000                                                


Q ss_pred             cccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC----------CcEEEEECCC------CeEEEEe-ecCCceEEE
Q 009614          373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVGI------DRCLRVF-SHNNYVTSV  434 (531)
Q Consensus       373 ~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D----------g~V~lwdl~~------~~~l~~~-~h~~~V~sv  434 (531)
                               .....|...+..++|+|+| .|++++.+          ..|++||+.+      +...... .+...+..+
T Consensus       123 ---------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  193 (662)
T 3azo_A          123 ---------VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP  193 (662)
T ss_dssp             ---------CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred             ---------CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence                     0000145567899999999 88888776          5899999988      6666555 566788899


Q ss_pred             EEeeCCCCEEEEEeCC--------CeEEEEeCC-CC---eEEEecC-CCCceEEEEEccCCCEEEEEeCCC--cEEEEeC
Q 009614          435 AFNPVDDNYFISGSID--------GKVRIWEVR-RC---QVVDYTD-IREIVSAVCYCPDGKGGIVGTMTG--NCRFYDI  499 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~D--------g~I~Iwd~~-~~---~~~~~~~-~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~  499 (531)
                      +|+| |+++|+.++.+        ..|++||+. ++   +...+.. +...+..++|+|||++++++..+|  .|++||+
T Consensus       194 ~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          194 RLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             EECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred             eECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence            9999 99999887755        379999999 56   5544443 467899999999999888888888  6777777


Q ss_pred             CCCeEEE
Q 009614          500 KDNQLYQ  506 (531)
Q Consensus       500 ~~~~l~~  506 (531)
                      .++++..
T Consensus       273 ~~~~~~~  279 (662)
T 3azo_A          273 ATGAATQ  279 (662)
T ss_dssp             TTCCEEE
T ss_pred             CCCceee
Confidence            6776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=2.2e-12  Score=140.74  Aligned_cols=188  Identities=10%  Similarity=0.050  Sum_probs=135.0

Q ss_pred             eCCCCe-EEeeec-CCeEEEEeCC--C-CcccccccccceEEcc-----cCCCEEEEEEccCCCEEEEEeCC--------
Q 009614          244 KPGDHE-LTLGQR-MRRVRVHPVK--K-QSRELSSLYTGQEFLA-----HEGSILTMKFSLDGQYLASGGED--------  305 (531)
Q Consensus       244 spdg~~-lasgs~-dg~I~vwd~~--~-~~~~~~~~~~~~~l~~-----H~~~I~~l~fspdg~~Lasgs~D--------  305 (531)
                      +|||+. |+.+.. +..|.+++..  . ...        +.+..     |...+..++|+|||+.|++++.|        
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~--------~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP--------RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCC--------EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCC--------EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            399998 766543 5667777765  1 211        12333     66788999999999999998876        


Q ss_pred             --CcEEEEEccc------CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc
Q 009614          306 --GTVRVWKVIE------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (531)
Q Consensus       306 --g~I~iWd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (531)
                        ..|.+|++.+      +..                                                           
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~-----------------------------------------------------------  179 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAV-----------------------------------------------------------  179 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGS-----------------------------------------------------------
T ss_pred             ceeEEEEEECCCCccccCCce-----------------------------------------------------------
Confidence              5788888765      221                                                           


Q ss_pred             CcceeEee-cCCCCeeEEEEcCCC-eEEEEeCC--------CcEEEEECC-CC---eEEEEee-cCCceEEEEEeeCCCC
Q 009614          378 EKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVG-ID---RCLRVFS-HNNYVTSVAFNPVDDN  442 (531)
Q Consensus       378 ~~~~~~~~-~h~~~I~~l~~sp~~-~l~s~s~D--------g~V~lwdl~-~~---~~l~~~~-h~~~V~sv~fsp~d~~  442 (531)
                          ..+. .+...+..++|+|+| +|+.++.+        ..|++||+. ++   +...... +...+..+.|+| |++
T Consensus       180 ----~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~  254 (662)
T 3azo_A          180 ----RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGS  254 (662)
T ss_dssp             ----EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSC
T ss_pred             ----eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCe
Confidence                1122 334567788999999 78777654        379999998 56   4444444 578899999999 888


Q ss_pred             EEEEEeCCC--eEEEEeCCCCeEEEecCCCCc---------eEEEEEccCCCEEEEEeCCCcEEEE--eCCCCeE
Q 009614          443 YFISGSIDG--KVRIWEVRRCQVVDYTDIREI---------VSAVCYCPDGKGGIVGTMTGNCRFY--DIKDNQL  504 (531)
Q Consensus       443 ~l~sgs~Dg--~I~Iwd~~~~~~~~~~~~~~~---------v~~v~~spdg~~l~sgs~dg~I~iw--d~~~~~l  504 (531)
                      +++++..++  .|.+||+.+++...+..+...         +..++|+|++++++++.. +.++||  |+.++++
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~  328 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL  328 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE
Confidence            888888888  777778777777655443322         467899999999999998 999999  6666653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.46  E-value=9.5e-12  Score=125.67  Aligned_cols=190  Identities=12%  Similarity=0.074  Sum_probs=126.2

Q ss_pred             EEeeecC--CeEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc-cCccccceecC
Q 009614          250 LTLGQRM--RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQ  325 (531)
Q Consensus       250 lasgs~d--g~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~-~~~~~~~~~~~  325 (531)
                      +++|+..  +.|.+|++......+..   .... .++...+..++|+|+|++|++++.+ .|.+|++. +++.....   
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~---~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~---   77 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKL---IKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA---   77 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEE---EEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE---
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEE---eeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee---
Confidence            4455442  56888776432211111   1111 1234468899999999999999888 99999986 54321100   


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-e-E-
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-L-  402 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~-l-  402 (531)
                                                                               ....+ +.+..++|+|+| + + 
T Consensus        78 ---------------------------------------------------------~~~~~-g~~~~~~~spdg~~l~~   99 (365)
T 1jof_A           78 ---------------------------------------------------------SHPIG-GHPRANDADTNTRAIFL   99 (365)
T ss_dssp             ---------------------------------------------------------EEECC-SSGGGGCTTSCCEEEEE
T ss_pred             ---------------------------------------------------------EeecC-CCCccEEECCCCCEEEE
Confidence                                                                     00001 124457888988 3 3 


Q ss_pred             EEEe-------------CCCcEEEEECC-CCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCC-CC
Q 009614          403 LSSS-------------ADKTVRLWQVG-IDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVR-RC  461 (531)
Q Consensus       403 ~s~s-------------~Dg~V~lwdl~-~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~-~~  461 (531)
                      +++.             .++++.+|++. .++....+.     +...+.+++|+| ++++++++.. ++.|++|++. ++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTS
T ss_pred             EEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCC
Confidence            3442             68999999997 465544332     456899999999 8998877654 6899999998 67


Q ss_pred             eEEE---ec--CCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCeEE
Q 009614          462 QVVD---YT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLY  505 (531)
Q Consensus       462 ~~~~---~~--~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~--~~~l~  505 (531)
                      +...   ..  .+...+..++|+|||++|++++. ++.|.+|++.  ++++.
T Consensus       179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            6532   22  23567899999999999988775 6889999765  56654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.41  E-value=4.7e-11  Score=115.81  Aligned_cols=232  Identities=11%  Similarity=0.048  Sum_probs=156.9

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceec
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      .+++|++++.++.|++||..+++...       .+..|. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w-------~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVW-------EYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEE-------EEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEE-------EeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            46789999999999999987665432       244444 4688999999999888  35778999998 8888777765


Q ss_pred             CCC-CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee------cCCCCeeEEEEc
Q 009614          325 QDT-DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------GHSSEVLDLSWS  397 (531)
Q Consensus       325 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~I~~l~~s  397 (531)
                      ... .+......  ....++.....             ....++.++..     ++.+..+.      .+......+++.
T Consensus        74 ~~~~~~~~~~~~--~dG~~lv~~~~-------------~~~~v~~vd~~-----Gk~l~~~~~~~~~~~~~~~~~~v~~~  133 (276)
T 3no2_A           74 PAGCEMQTARIL--PDGNALVAWCG-------------HPSTILEVNMK-----GEVLSKTEFETGIERPHAQFRQINKN  133 (276)
T ss_dssp             CTTCEEEEEEEC--TTSCEEEEEES-------------TTEEEEEECTT-----SCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred             CCCccccccEEC--CCCCEEEEecC-------------CCCEEEEEeCC-----CCEEEEEeccCCCCcccccccCceEC
Confidence            321 12222222  22222221111             02233333321     11122111      222345566788


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCC------
Q 009614          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI------  469 (531)
Q Consensus       398 p~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~------  469 (531)
                      ++| ++++...++.|.+||.. ++.+..+.....+.++.+.+ +++++++++.++.|..+|..+++++- +...      
T Consensus       134 ~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          134 KKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             CCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence            888 88899999999999998 99999998666677888888 89999999888899999999888873 3221      


Q ss_pred             CCceEEEEEccCCCEEEEEeCC--------CcEEEEeC-CCCeEEEEee
Q 009614          470 REIVSAVCYCPDGKGGIVGTMT--------GNCRFYDI-KDNQLYQQNQ  509 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~d--------g~I~iwd~-~~~~l~~~~~  509 (531)
                      -..+..++..++|.++++....        +..+++.+ .+++++.++.
T Consensus       212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            1237889999999988887421        24467777 5788877654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.41  E-value=3.3e-10  Score=112.29  Aligned_cols=233  Identities=11%  Similarity=0.061  Sum_probs=145.5

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC----CcEEEEE
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWK  312 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~iWd  312 (531)
                      ...+++|+|+|.+++++..++.|.+|+.......       .....+...+.+++|+++|+++++...+    +.|.+||
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-------EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            3456899999998888888999999998754321       1122456789999999999988877766    6899999


Q ss_pred             cccCccccceec--CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          313 VIEHERLDGFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       313 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ..++.....+..  ....+..+.+.+  ...++.......        .......++.++.....     +..+..+...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~--------~~~~~~~l~~~~~~~~~-----~~~~~~~~~~  183 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGY--------STNPLGGVYYVSPDFRT-----VTPIIQNISV  183 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCB--------TTBCCEEEEEECTTSCC-----EEEEEEEESS
T ss_pred             CCCCEEEEEEccCccCCcccceEECC--CCCEEEEecccc--------ccCCCceEEEEeCCCCE-----EEEeecCCCc
Confidence            877654322211  111222233322  222222211100        01123445555543211     2222223345


Q ss_pred             eeEEEEcCCC-eEE-EEeCCCcEEEEECCC-CeEEEEe------ec--CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          391 VLDLSWSKNG-FLL-SSSADKTVRLWQVGI-DRCLRVF------SH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       391 I~~l~~sp~~-~l~-s~s~Dg~V~lwdl~~-~~~l~~~------~h--~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      +..++|+|++ .|+ +.+.++.|.+||+.+ +..+..+      ..  ...+..+++++ +++++++...++.|.+||..
T Consensus       184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCC
Confidence            7899999998 454 455678999999964 3322211      11  24678899999 89988888888999999995


Q ss_pred             CCeEEEecCCCC------ceEEEEEccCCCEEEEEeCCC
Q 009614          460 RCQVVDYTDIRE------IVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       460 ~~~~~~~~~~~~------~v~~v~~spdg~~l~sgs~dg  492 (531)
                      ......+.....      .+.+++|+||++.|++++.++
T Consensus       263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            433333333222      688999999988887776664

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.41  E-value=2.7e-11  Score=133.56  Aligned_cols=204  Identities=8%  Similarity=0.008  Sum_probs=136.1

Q ss_pred             ccceeeeCCCCeEEeeecCC-----eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc-----
Q 009614          238 HGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg-----~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-----  307 (531)
                      +..++|+|||++||.+..++     .|++||+.++.....      .+. + ..+..++|+|||+.|+.++.++.     
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------VLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------EEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------ccc-C-cccceEEEEeCCCEEEEEEECCcccccc
Confidence            44679999999998765543     899999986553211      121 1 23678999999999999988765     


Q ss_pred             -----------EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          308 -----------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       308 -----------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                                 |++|++.++....                                                        
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~--------------------------------------------------------  222 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSED--------------------------------------------------------  222 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGC--------------------------------------------------------
T ss_pred             ccccccCCCCEEEEEECCCCcccc--------------------------------------------------------
Confidence                       6666665443110                                                        


Q ss_pred             cCcceeEeecCCCCeeEEEEcCCC-eEEEEeC-----CCcEEEEECCC------C--eEEEEeecCCceEEEEEeeCCCC
Q 009614          377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI------D--RCLRVFSHNNYVTSVAFNPVDDN  442 (531)
Q Consensus       377 ~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~-----Dg~V~lwdl~~------~--~~l~~~~h~~~V~sv~fsp~d~~  442 (531)
                        ..+.....|...+..+.|+|+| +|+.++.     +..|.+||+.+      +  .......+...+.. .|+| ++.
T Consensus       223 --~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~  298 (710)
T 2xdw_A          223 --ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGT  298 (710)
T ss_dssp             --EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETT
T ss_pred             --eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCC
Confidence              0011122345567889999999 6666553     56899999976      4  23333345555554 4888 777


Q ss_pred             EEEEEeCC----CeEEEEeCCCCe---EEEecCCCC--ceEEEEEccCCCEEEEEeCCCc--EEEEeCCCCeEEEEee
Q 009614          443 YFISGSID----GKVRIWEVRRCQ---VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGN--CRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       443 ~l~sgs~D----g~I~Iwd~~~~~---~~~~~~~~~--~v~~v~~spdg~~l~sgs~dg~--I~iwd~~~~~l~~~~~  509 (531)
                      .|+..+..    +.|.+||+.++.   ...+..+..  .+..++|++++.++++...++.  |++|++.+++.+..+.
T Consensus       299 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          299 VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence            76665543    369999998764   233444443  6888999988888888888885  6667876777655543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=3.1e-11  Score=115.78  Aligned_cols=238  Identities=6%  Similarity=-0.064  Sum_probs=153.0

Q ss_pred             cccceeeeCCCCeEE-eeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          237 RHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       237 ~~~s~~fspdg~~la-sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ...+++++++|.+++ +...++.|.+|+.........       ...+...+.+|+++++|+++++.. ++.|.+|+...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence            444689999999777 557789999998764332111       112335678999999999666655 88999999865


Q ss_pred             CccccceecCC-CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          316 HERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      .... .+.... ..+..+.+.+  .+.++..              ...++.+.+++......    ......+...+.+|
T Consensus        97 ~~~~-~~~~~~~~~p~~i~~~~--~g~l~v~--------------~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           97 NNQT-VLPFDGLNYPEGLAVDT--QGAVYVA--------------DRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGV  155 (270)
T ss_dssp             SCCE-ECCCCSCSSEEEEEECT--TCCEEEE--------------EGGGTEEEEECTTCCSC----EECCCCSCCSCCCE
T ss_pred             ceEe-eeecCCcCCCcceEECC--CCCEEEE--------------ECCCCEEEEEECCCcee----EeeccccCCCceeE
Confidence            5422 121111 1222333322  1222222              12234455554332111    11112233467889


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec-CCCC
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE  471 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~-~~~~  471 (531)
                      ++++++ ++++...++.|.+||........... +...+.+|+++| ++.++++...++.|.+|+.......... .+..
T Consensus       156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence            999988 66666667899999998776544322 336789999999 8888888778899999999876544332 2335


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      .+.+++++|+|+++++...++.|++|++...+.
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            789999999999888888899999999876543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.40  E-value=6.3e-11  Score=118.05  Aligned_cols=228  Identities=8%  Similarity=0.098  Sum_probs=144.8

Q ss_pred             cccceeeeCCCCeEEeeecC---C--eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC------
Q 009614          237 RHGSATLKPGDHELTLGQRM---R--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------  305 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~d---g--~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------  305 (531)
                      .+...+|+|||++||..+.+   +  .|.+|++..+...        .+..+.. +..++|+|||+.|+.++.+      
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~--------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~  130 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK--------KILEAKN-IRSLEWNEDSRKLLIVGFKRREDED  130 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE--------EEEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE--------EEEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence            44568999999999887654   3  4777777643321        1222334 9999999999999888642      


Q ss_pred             ---------------------CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCC-C
Q 009614          306 ---------------------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS-D  363 (531)
Q Consensus       306 ---------------------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  363 (531)
                                           ..|.+|++.+++....+.. . .+..+.+.++.  .++.........       ... .
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~-------~~~~~  199 (347)
T 2gop_A          131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP-------QYFKF  199 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC-------CSSCC
T ss_pred             cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccc-------ccccc
Confidence                                 5789999988775344433 2 45555666544  222221111000       000 2


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC--------CcEEEEECCCCeEEEEee-cCCceEE
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD--------KTVRLWQVGIDRCLRVFS-HNNYVTS  433 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D--------g~V~lwdl~~~~~l~~~~-h~~~V~s  433 (531)
                      ..++.++  .    . ....+..+ ..+..+  +|+| .|+.++.+        ..|.+||  +++...... +...+..
T Consensus       200 ~~l~~~d--~----~-~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~  267 (347)
T 2gop_A          200 WDIYIWE--D----G-KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ  267 (347)
T ss_dssp             EEEEEEE--T----T-EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE
T ss_pred             ccEEEeC--C----C-ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC
Confidence            2344443  1    1 12223333 445444  8999 77766644        3688888  555544443 5677886


Q ss_pred             -EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcE-EEEeCCCCe
Q 009614          434 -VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC-RFYDIKDNQ  503 (531)
Q Consensus       434 -v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I-~iwd~~~~~  503 (531)
                       +.|+  ++ ++++++.++.++|| +.+++...+..+...|.+++|+|  .++++++.++.. .||.+. ++
T Consensus       268 ~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          268 AKIKD--GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEEET--TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             ccEEc--Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence             8897  56 88899999999999 87777666666677899999999  677777777765 777776 54

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=4.4e-11  Score=118.68  Aligned_cols=193  Identities=11%  Similarity=0.068  Sum_probs=140.5

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ..+.+++|++++..++....++.++.|.-.          ....+..+...+.+++|+++|++++++..++.|.+||..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            446678899998888877788888888321          1123556777789999999999888888899999999866


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ++...                                                              ....+...+.+++
T Consensus        76 ~~~~~--------------------------------------------------------------~~~~~~~~~~~i~   93 (333)
T 2dg1_A           76 KEIKR--------------------------------------------------------------PFVSHKANPAAIK   93 (333)
T ss_dssp             CCEEE--------------------------------------------------------------EEECSSSSEEEEE
T ss_pred             CcEEE--------------------------------------------------------------EeeCCCCCcceEE
Confidence            54210                                                              0112345789999


Q ss_pred             EcCCC-eEEEEeCC----CcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeC------CCeEEEEeCCCC
Q 009614          396 WSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRC  461 (531)
Q Consensus       396 ~sp~~-~l~s~s~D----g~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~------Dg~I~Iwd~~~~  461 (531)
                      ++|++ ++++...+    +.|.+||..++.....+.   +...+..++++| +++++++...      .+.|..||..++
T Consensus        94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~  172 (333)
T 2dg1_A           94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR  172 (333)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCC
Confidence            99999 55555555    689999998877654432   446789999999 8888777654      356777777766


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEE-EeCCCcEEEEeCCC
Q 009614          462 QVVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKD  501 (531)
Q Consensus       462 ~~~~~~~~~~~v~~v~~spdg~~l~s-gs~dg~I~iwd~~~  501 (531)
                      +...+......+..++|+|+|+.|++ .+.++.|++|++.+
T Consensus       173 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          173 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            65544444446789999999986654 45678999999964

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=2.2e-11  Score=123.04  Aligned_cols=178  Identities=9%  Similarity=0.017  Sum_probs=131.3

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCccccc----ccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~----~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .++.+++++...++++|+.++ ++||++........    .... .....+.+ |+.|+|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            466799999999999998875 66698764431100    0111 12334667 999999  99999999 889999999


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      +.+.....                                                              ....|...+.
T Consensus       113 v~sl~~~~--------------------------------------------------------------~~~~~~~~v~  130 (388)
T 1xip_A          113 LEELSEFR--------------------------------------------------------------TVTSFEKPVF  130 (388)
T ss_dssp             SSSTTCEE--------------------------------------------------------------EEEECSSCEE
T ss_pred             chhhhccC--------------------------------------------------------------ccceeeccee
Confidence            87654211                                                              1122334456


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE--E-Ee---
Q 009614          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-DY---  466 (531)
Q Consensus       393 ~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~--~-~~---  466 (531)
                      ++.+.+. .+++++.||.|.+||+..+....   +...|+|++|+| ++  ++.|..||++++|+...+++  . .+   
T Consensus       131 ~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P  203 (388)
T 1xip_A          131 QLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP  203 (388)
T ss_dssp             EEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             eEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence            6666554 48888999999999999887654   456899999999 77  78899999999999988774  2 23   


Q ss_pred             ---c---CCCCceEEEEEccCCCEEEEEe
Q 009614          467 ---T---DIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       467 ---~---~~~~~v~~v~~spdg~~l~sgs  489 (531)
                         .   +|...|.+|+|.+++.++++-.
T Consensus       204 p~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          204 SELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             HHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cccccccCCCeeEEEEEEecCCeEEEEEc
Confidence               2   3678899999999999988743

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.37  E-value=5.8e-11  Score=120.21  Aligned_cols=237  Identities=9%  Similarity=-0.000  Sum_probs=145.1

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEE--EccCCCEEEEE---------------
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK--FSLDGQYLASG---------------  302 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~--fspdg~~Lasg---------------  302 (531)
                      ...|+|||+.|+.+..++.|++|++......       ..+..+...+....  ++|++++|+..               
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEEN-------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEE-------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcce-------eeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            4689999999999999999999999865432       12334555454444  48999988743               


Q ss_pred             -------eCCCcEEEEEcccCccccceecCCCCCeeEEEee-cCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614          303 -------GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI-NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       303 -------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                             ..+..|.+||+.+++... +...........+++ +....++... ...         ......+++++... 
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~-~~~---------~~~~~~l~~~d~~~-  225 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHE-GPH---------DLVDARMWLINEDG-  225 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEEC-SCT---------TTSSCSEEEEETTS-
T ss_pred             hhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEe-cCC---------CCCcceEEEEeCCC-
Confidence                   244679999998876432 322233344445555 3322211111 100         01122444444322 


Q ss_pred             cccCcceeEeecCC--CCeeEEEEcCCC-eEEEEeC--CC---cEEEEECCCCeEEEEeecCCc------eEEEEEeeCC
Q 009614          375 RLLEKPLHEFQGHS--SEVLDLSWSKNG-FLLSSSA--DK---TVRLWQVGIDRCLRVFSHNNY------VTSVAFNPVD  440 (531)
Q Consensus       375 ~~~~~~~~~~~~h~--~~I~~l~~sp~~-~l~s~s~--Dg---~V~lwdl~~~~~l~~~~h~~~------V~sv~fsp~d  440 (531)
                          .....+..+.  ..+..+.|+|+| .|+..+.  .+   .|.+||+.+++..........      ...++|+| +
T Consensus       226 ----~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-d  300 (388)
T 3pe7_A          226 ----TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-D  300 (388)
T ss_dssp             ----CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-E
T ss_pred             ----CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-C
Confidence                1223333343  257788999999 5654332  22   399999999875443332220      11237999 8


Q ss_pred             CCEEEEE---------eCCCeEEEEeCCCCeEEEecCCCC-----------ceEEEEEccCCCEEEEEe-CCCcEEEEeC
Q 009614          441 DNYFISG---------SIDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKGGIVGT-MTGNCRFYDI  499 (531)
Q Consensus       441 ~~~l~sg---------s~Dg~I~Iwd~~~~~~~~~~~~~~-----------~v~~v~~spdg~~l~sgs-~dg~I~iwd~  499 (531)
                      ++.|+..         ..+..|++||+.+++...+..+..           .+..++|+|||+.|+.++ .+|...||.+
T Consensus       301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            8877753         456789999999998876666655           578899999999888766 4676666654


Q ss_pred             C
Q 009614          500 K  500 (531)
Q Consensus       500 ~  500 (531)
                      .
T Consensus       381 ~  381 (388)
T 3pe7_A          381 T  381 (388)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.37  E-value=3.2e-11  Score=132.59  Aligned_cols=204  Identities=11%  Similarity=0.024  Sum_probs=136.9

Q ss_pred             cccceeeeCCCCeEE-----eeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc----
Q 009614          237 RHGSATLKPGDHELT-----LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----  307 (531)
Q Consensus       237 ~~~s~~fspdg~~la-----sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~----  307 (531)
                      .+.+++|+|||++||     .|+.+..|++||+.++......     .+...  ....++|+|||+.|+.++.|..    
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----CBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----ccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence            355689999999998     5556679999999876532010     11111  1267899999999999988776    


Q ss_pred             ---------EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       308 ---------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                               |++|++.++....                                                          
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~----------------------------------------------------------  216 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKD----------------------------------------------------------  216 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGC----------------------------------------------------------
T ss_pred             cccCCCCCEEEEEECCCCchhc----------------------------------------------------------
Confidence                     8888876654210                                                          


Q ss_pred             cceeEeecCCCCeeEEEEcCCC-eEEEEeCCC----cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe---CC
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---ID  450 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg----~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs---~D  450 (531)
                      ..+.....|...+..+.|+|+| +|+.++.++    .|.+|+..++.......+...+....+ | ++.+++...   .+
T Consensus       217 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~  294 (695)
T 2bkl_A          217 TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPR  294 (695)
T ss_dssp             EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTT
T ss_pred             eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCC
Confidence            0112223455678899999999 777666555    677777766665555556666677767 5 555544444   25


Q ss_pred             CeEEEEeCCCCeE---EEecCC--CCceEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEEEEe
Q 009614          451 GKVRIWEVRRCQV---VDYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQN  508 (531)
Q Consensus       451 g~I~Iwd~~~~~~---~~~~~~--~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~-~~~l~~~~  508 (531)
                      +.|.+||+.++..   ..+..+  ...+..++|+ ++.++++...|+..+||.+. +++....+
T Consensus       295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            8999999987652   333333  4567888888 77788888999988887654 35444433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=1.6e-10  Score=114.94  Aligned_cols=221  Identities=13%  Similarity=0.129  Sum_probs=146.3

Q ss_pred             CCCEEEEEEccCCCEEEEEeCC------------------------CcEEEEEcccCccccceecC-CCCCeeEEEeecC
Q 009614          284 EGSILTMKFSLDGQYLASGGED------------------------GTVRVWKVIEHERLDGFDVQ-DTDPSCLYFTINH  338 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~D------------------------g~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~  338 (531)
                      -+.+.+|+++|+|+++++...+                        +.|.+||..+++....+... ...+..+.+.+  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~--  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT--  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence            4679999999999999888877                        47999998887765443211 11233333332  


Q ss_pred             CcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe---------ecCCCCeeEEEEcC-CC-eEEEEe-
Q 009614          339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF---------QGHSSEVLDLSWSK-NG-FLLSSS-  406 (531)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~I~~l~~sp-~~-~l~s~s-  406 (531)
                      ...++.              ....+..+..|+.....   ..+..+         .++......|+++| ++ ++++.+ 
T Consensus       101 ~g~l~v--------------~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A          101 DGNYWV--------------TDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             TSCEEE--------------EETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred             CCCEEE--------------EECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence            222222              22334456666553210   022222         24555789999999 67 666665 


Q ss_pred             CCCcEEEEECCCCeEEEEeec-----------CCceEEEEEeeCC-CCEEEEEeCCCeEEEEeCCCCeEEEe---cCCCC
Q 009614          407 ADKTVRLWQVGIDRCLRVFSH-----------NNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQVVDY---TDIRE  471 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h-----------~~~V~sv~fsp~d-~~~l~sgs~Dg~I~Iwd~~~~~~~~~---~~~~~  471 (531)
                      .++.|++|+ ..+..+..+..           -.....|+++| + +.++++...++.|++|+..+++.+..   ..+..
T Consensus       164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~  241 (329)
T 3fvz_A          164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR  241 (329)
T ss_dssp             SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred             CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence            689999999 56777777742           13489999999 6 78888888899999999998877753   34556


Q ss_pred             ceEEEEEcc------CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          472 IVSAVCYCP------DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       472 ~v~~v~~sp------dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .+.+++|+|      +|+.+++...+..|++|++.+++++..+..     ...+.....+|+|.|
T Consensus       242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-----~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          242 NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-----VRKHFDMPHDIVASE  301 (329)
T ss_dssp             CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-----SSSCCSSEEEEEECT
T ss_pred             CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-----CCCccCCeeEEEECC
Confidence            789999999      333333334456899999999998876531     122335567777765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.36  E-value=4.6e-10  Score=108.71  Aligned_cols=220  Identities=10%  Similarity=0.098  Sum_probs=143.8

Q ss_pred             ccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC------CCCeeEEEeecCCcceeeeeccccccccc
Q 009614          282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD------TDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       282 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      +|-..+.+|+++++|+++++...++.|.+||.. ++....+....      ..+..+.+. .....++....        
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~l~v~~~--------   96 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTER--------   96 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEEC--------
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-cCCCeEEEEcC--------
Confidence            455679999999999988888889999999976 44444332211      112222221 11112221111        


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEee-cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCc
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNY  430 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~  430 (531)
                           ..+..+.+|+...     +.+..+. .+...+..+++.|++ ++++...++.|.+||.. ++.+..+.   +...
T Consensus        97 -----~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           97 -----SPTHQIQIYNQYG-----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF  165 (286)
T ss_dssp             -----GGGCEEEEECTTS-----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred             -----CCCCEEEEECCCC-----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence                 1134566665321     2233332 244578999999999 66666778999999964 55666664   4456


Q ss_pred             eEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC--CCceEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeEEEE
Q 009614          431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQ  507 (531)
Q Consensus       431 V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~--~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~~~~l~~~  507 (531)
                      +..|+++| +++++++...++.|++||.....+..+...  ...+..++++|+|+++++...++ .|++||.. ++.+..
T Consensus       166 p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~  243 (286)
T 1q7f_A          166 PNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISA  243 (286)
T ss_dssp             EEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEE
T ss_pred             cEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEE
Confidence            89999999 888888888899999999865544444332  35789999999999888888776 99999964 555555


Q ss_pred             eeeeecccccCCCceeeeEEEee
Q 009614          508 NQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       508 ~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +....      ....+.+++|.|
T Consensus       244 ~~~~~------~~~~~~~i~~~~  260 (286)
T 1q7f_A          244 LESKV------KHAQCFDVALMD  260 (286)
T ss_dssp             EEESS------CCSCEEEEEEET
T ss_pred             EcccC------CCCcceeEEECC
Confidence            44321      123456666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.35  E-value=4.1e-10  Score=112.00  Aligned_cols=236  Identities=8%  Similarity=-0.002  Sum_probs=157.7

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD  320 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~  320 (531)
                      +++. ++.+.++...++.|.+||..+.+..       ..+. .......|+++++++.+++...++.|.+||..+++...
T Consensus        49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           49 MVIR-DGIGWIVVNNSHVIFAIDINTFKEV-------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTTCCEE-------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             EEEE-CCEEEEEEcCCCEEEEEECcccEEE-------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            4553 4555566667899999999854432       2232 34678899999998544544489999999999988766


Q ss_pred             ceecCCC-----CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          321 GFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       321 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .+.....     .+..+.+  . ...++...             .+.+..+.+++......    +..+.. ......+.
T Consensus       120 ~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~-------------~~~~~~v~viD~~t~~~----~~~i~~-g~~p~~i~  178 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ--Y-GKYVYVNC-------------WSYQNRILKIDTETDKV----VDELTI-GIQPTSLV  178 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE--E-TTEEEEEE-------------CTTCCEEEEEETTTTEE----EEEEEC-SSCBCCCE
T ss_pred             EEEcCCccccCCCcceEEE--E-CCEEEEEc-------------CCCCCEEEEEECCCCeE----EEEEEc-CCCccceE
Confidence            6654331     2223333  1 11222111             11245677776655332    223332 23457889


Q ss_pred             EcCCC-eEEEEeCC----------CcEEEEECCCCeEEEEeec--CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          396 WSKNG-FLLSSSAD----------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       396 ~sp~~-~l~s~s~D----------g~V~lwdl~~~~~l~~~~h--~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ++|+| +++++..+          +.|.+||..+++....+..  ......++|+| ++++|+++..  .|.+||+.+++
T Consensus       179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSS
T ss_pred             EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCc
Confidence            99999 44444443          7899999999998877763  34789999999 8888887654  89999999887


Q ss_pred             EEE--ecCC-CCceEEEEEcc-CCCEEEEE----eCCCcEEEEeCCCCeEEEEeee
Q 009614          463 VVD--YTDI-REIVSAVCYCP-DGKGGIVG----TMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       463 ~~~--~~~~-~~~v~~v~~sp-dg~~l~sg----s~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      +..  +... ......++++| ++.++++.    ..++.|.+||.. ++++.++.+
T Consensus       256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            642  1221 45789999999 55555555    568899999998 998888765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.33  E-value=2.4e-10  Score=113.86  Aligned_cols=234  Identities=11%  Similarity=0.094  Sum_probs=139.0

Q ss_pred             ceeeeCCCCeEEee---------ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC---C-
Q 009614          240 SATLKPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---G-  306 (531)
Q Consensus       240 s~~fspdg~~lasg---------s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g-  306 (531)
                      ...+  ||++++..         ..++.|.+|+...+...        .+    ..+..++|+|||++||.++.+   + 
T Consensus        19 ~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           19 DPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR--------FI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             EEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE--------EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             cceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE--------Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            3455  77777653         23678999998754321        22    468889999999999988754   3 


Q ss_pred             -cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc--cc--ccccc-------ccCCCceEEEeCCccc
Q 009614          307 -TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK--ID--KTKSL-------RKSSDLTCVVLPPKVF  374 (531)
Q Consensus       307 -~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~-------~~~~~~~~~~~~~~~~  374 (531)
                       .|.+|++.+++.........  +..+.|.++....++........  ..  .....       .......+++|+....
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             ceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence             37778887776543333222  45555655543333322110000  00  00000       0011345666665432


Q ss_pred             cccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCC-------cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE
Q 009614          375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK-------TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg-------~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg  447 (531)
                      .    .+..+.. . .+..+.|+|+|+++++..+.       ...||.+.+++......+ ..+..+  +| ++++|+.+
T Consensus       163 ~----~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--sp-dg~~l~~~  232 (347)
T 2gop_A          163 E----VIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DS-DGERILLY  232 (347)
T ss_dssp             E----EEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EE-CSSCEEEE
T ss_pred             e----EEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CC-CCCEEEEE
Confidence            2    1133333 3 78899999999444554432       344554446655444445 555554  99 89888877


Q ss_pred             eCC--------CeEEEEeCCCCeEEEe-cCCCCceEE-EEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          448 SID--------GKVRIWEVRRCQVVDY-TDIREIVSA-VCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       448 s~D--------g~I~Iwd~~~~~~~~~-~~~~~~v~~-v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      +.+        ..|.+||  +++...+ ..+...+.. +.|+ || ++++++.++.++|| +.++++
T Consensus       233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             EccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            654        4788888  6665554 344667876 9999 98 88999999999999 876654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.31  E-value=3e-11  Score=122.37  Aligned_cols=240  Identities=7%  Similarity=-0.018  Sum_probs=141.6

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEE-------------------EEEccCCCEEEE
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-------------------MKFSLDGQYLAS  301 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~-------------------l~fspdg~~Las  301 (531)
                      ..|+|||++|+.++.++.|++|+.......       .....+......                   +.|+|+++.++.
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~  158 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQ-------VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF  158 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEE-------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcE-------EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence            689999999999999999999998765422       112222222222                   356777777665


Q ss_pred             E-----eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          302 G-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       302 g-----s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      +     ..+..|.+||+.+++..... ........+.+.+.....++.......         ......+++++...   
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~---------~~~~~~l~~~d~~~---  225 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH---------DLVDARMWLVNEDG---  225 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS---------SSCSCCCEEEETTS---
T ss_pred             eeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC---------CCCCceEEEEECCC---
Confidence            4     35678999999877643332 222233344444411111221111000         00012344444322   


Q ss_pred             cCcceeEeecC--CCCeeEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEe
Q 009614          377 LEKPLHEFQGH--SSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       377 ~~~~~~~~~~h--~~~I~~l~~sp~~-~l~s~s~D-----g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                        .....+..+  ...+..++|+|+| .|+.++.+     +.|.+||+.+++......... .. +.|+|.+++++++++
T Consensus       226 --~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          226 --SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             --CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred             --CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence              112222222  2357889999999 66666543     449999999887655443333 33 889884667777654


Q ss_pred             ----------------CCCeEEEEeCCCCeEEEecCCCC-----------ceEEEEEccCCCEEEEEeC-CCcEEEE--e
Q 009614          449 ----------------IDGKVRIWEVRRCQVVDYTDIRE-----------IVSAVCYCPDGKGGIVGTM-TGNCRFY--D  498 (531)
Q Consensus       449 ----------------~Dg~I~Iwd~~~~~~~~~~~~~~-----------~v~~v~~spdg~~l~sgs~-dg~I~iw--d  498 (531)
                                      .+..|++||+.+++...+..+..           .+..++|+|||+.|+.++. ++...||  +
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                            34789999999887655554443           2567899999998887765 4554444  5


Q ss_pred             CCCCeE
Q 009614          499 IKDNQL  504 (531)
Q Consensus       499 ~~~~~l  504 (531)
                      +.+++.
T Consensus       382 ~~~~~~  387 (396)
T 3c5m_A          382 VPESYK  387 (396)
T ss_dssp             CCTTCC
T ss_pred             Eccccc
Confidence            555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.26  E-value=4.8e-09  Score=106.19  Aligned_cols=243  Identities=10%  Similarity=-0.066  Sum_probs=147.7

Q ss_pred             ceeeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccc--eEEcccCCCEEEEEEccCCCEEEEEeC--C
Q 009614          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D  305 (531)
Q Consensus       240 s~~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~--~~l~~H~~~I~~l~fspdg~~Lasgs~--D  305 (531)
                      .++++|||++++++.          .++.|.++|..+..... .....  .... +...-..+.|+|||++|+.+..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~-~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE-EEECCCccccc-cCCCccceEECCCCCEEEEEecCCC
Confidence            589999999998875          36789999987433211 00000  0000 1123458899999999998874  5


Q ss_pred             CcEEEEEcccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce--e
Q 009614          306 GTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL--H  382 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  382 (531)
                      +.|.++| .+++.... +....    +..+.+......+               ....++.+..++. .........  .
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~---------------~~~~dg~~~~vd~-~g~~~~~~~~~~  206 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFY---------------LLCAQGGLAKTDH-AGGAAGAGLVGA  206 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEE---------------EEcCCCCEEEEEC-CCcEEEEEeccc
Confidence            7899999 98887666 54321    2222222222111               1122333444433 211110000  0


Q ss_pred             EeecCCCC-eeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEee-----------cCCceEEEEEeeCCCCEEEEE
Q 009614          383 EFQGHSSE-VLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFS-----------HNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       383 ~~~~h~~~-I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~-----------h~~~V~sv~fsp~d~~~l~sg  447 (531)
                      .+ ....+ .....+.+++ .++..+..+.|.+.|+.+..  .+..+.           .......+.++| +++.++++
T Consensus       207 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~  284 (373)
T 2mad_H          207 ML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLL  284 (373)
T ss_pred             cc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEE
Confidence            00 11111 1223455555 44434467899999987552  233332           123344578999 77776665


Q ss_pred             eC----------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEE
Q 009614          448 SI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       448 s~----------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~~~~l~~~  507 (531)
                      ..          .+.|.++|+.+++++...........++|+|||+ +++++. .++.|.+||+.+++.+..
T Consensus       285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             eccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            43          3589999999999987556666789999999999 777777 489999999999999876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=1.3e-10  Score=117.45  Aligned_cols=180  Identities=8%  Similarity=0.004  Sum_probs=127.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCce
Q 009614          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (531)
                      .++.+++++...+|++|+.++ +++|++........-  ....                                     
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~--~~~~-------------------------------------   78 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--DSTP-------------------------------------   78 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--SSCC-------------------------------------
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc--cccc-------------------------------------
Confidence            689999999999999999985 556998654421110  0000                                     


Q ss_pred             EEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCE
Q 009614          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~  443 (531)
                                  ..+... ..+.+ |+.|+|  ++ .|+++ .++.|++||+.+....... .|...+.++.+.+ .  .
T Consensus        79 ------------~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~  138 (388)
T 1xip_A           79 ------------LTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T  138 (388)
T ss_dssp             ------------CCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred             ------------ccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence                        001111 12556 999999  66 77777 8899999999876544444 4777888887765 2  3


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE--EEEeeeeecccc-cCCC
Q 009614          444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL--YQQNQICLQGKK-KLPG  520 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l--~~~~~~~~~~~k-k~~~  520 (531)
                      ++++..||.|.+||+.++....   +...|+++||+|+|  ++.|..||++++|+...+++  ...+..+..-.. ..+.
T Consensus       139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~  213 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE  213 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred             EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence            8889999999999999887764   34689999999999  78899999999999988776  444322211110 1245


Q ss_pred             ceeeeEEEee
Q 009614          521 KRITGFQVVK  530 (531)
Q Consensus       521 ~~It~l~f~p  530 (531)
                      .+|++|+|.+
T Consensus       214 ~~V~sI~wl~  223 (388)
T 1xip_A          214 YSPLSVTILS  223 (388)
T ss_dssp             SEEEEEEESS
T ss_pred             eeEEEEEEec
Confidence            8899998864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.23  E-value=3.3e-09  Score=103.78  Aligned_cols=221  Identities=7%  Similarity=0.055  Sum_probs=142.4

Q ss_pred             cccceeeeCCCCeEEe-------eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcE
Q 009614          237 RHGSATLKPGDHELTL-------GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTV  308 (531)
Q Consensus       237 ~~~s~~fspdg~~las-------gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I  308 (531)
                      ...+++|+++|.++++       +..++.|.+|+..+.....  ... ....++...+.+++++++ |+++++. ..+.|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l   94 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV--ICK-PEVNGYGGIPAGCQCDRDANQLFVAD-MRLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE--EEC-CEETTEECCEEEEEECSSSSEEEEEE-TTTEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE--EEe-cccCCCCCCCceEEEecCCCcEEEEE-CCCCE
Confidence            3456889999988888       6788999999976544221  100 011235577999999999 7655544 44468


Q ss_pred             EEEEcccCccccc-eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          309 RVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       309 ~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      .+||.. ++.... ....                                                          ...+
T Consensus        95 ~~~d~~-g~~~~~~~~~~----------------------------------------------------------~~~~  115 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDS----------------------------------------------------------EGRR  115 (314)
T ss_dssp             EEEETT-SCEEECCSBCT----------------------------------------------------------TSCB
T ss_pred             EEEeCC-CCEEEEEeccC----------------------------------------------------------CCcc
Confidence            888876 432110 0000                                                          0011


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCC---------------CcEEEEECCCCeEEEEeecCCceEEEEEe----eCCCCEE-EE
Q 009614          388 SSEVLDLSWSKNG-FLLSSSAD---------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFN----PVDDNYF-IS  446 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~D---------------g~V~lwdl~~~~~l~~~~h~~~V~sv~fs----p~d~~~l-~s  446 (531)
                      ...+.++++.++| ++++...+               +.|..||.. ++......+......++|+    | +++.+ ++
T Consensus       116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~  193 (314)
T 1pjx_A          116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVA  193 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEE
T ss_pred             ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEE
Confidence            2357789999998 44444433               467777765 5555444455567899999    9 77655 44


Q ss_pred             EeCCCeEEEEeCC-CCeE-----E-EecCCC-CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          447 GSIDGKVRIWEVR-RCQV-----V-DYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       447 gs~Dg~I~Iwd~~-~~~~-----~-~~~~~~-~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                      ...++.|.+||+. +++.     . .+..+. ..+..+++.++|+++++...++.|.+||..+++.+..+..        
T Consensus       194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--------  265 (314)
T 1pjx_A          194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--------  265 (314)
T ss_dssp             ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--------
T ss_pred             ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--------
Confidence            4568899999986 4542     1 222333 5688999999999888887889999999987776554432        


Q ss_pred             CCceeeeEEEee
Q 009614          519 PGKRITGFQVVK  530 (531)
Q Consensus       519 ~~~~It~l~f~p  530 (531)
                      +...+++++|.|
T Consensus       266 ~~~~~~~i~~~~  277 (314)
T 1pjx_A          266 PFEKPSNLHFKP  277 (314)
T ss_dssp             SSSCEEEEEECT
T ss_pred             CCCCceeEEECC
Confidence            124566776654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.22  E-value=2.4e-08  Score=96.59  Aligned_cols=236  Identities=6%  Similarity=0.009  Sum_probs=152.3

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ..+.+++++++|.+.++...++.|.+|+.. ....  ..    .+..+...+.+|++.++|.++++...++.|..|+.. 
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKIT--EY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--EE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE--Ee----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            345578999999988877668999999877 3211  10    112345679999999999988887778899999975 


Q ss_pred             CccccceecC--CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          316 HERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       316 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      ++ ...+...  ...+..+.+.  ....+..              .......+..++.. ....   ......+...+..
T Consensus        87 g~-~~~~~~~~~~~~~~~i~~~--~~g~l~v--------------~~~~~~~i~~~d~~-g~~~---~~~~~~~~~~~~~  145 (299)
T 2z2n_A           87 GI-IKEYTLPNPDSAPYGITEG--PNGDIWF--------------TEMNGNRIGRITDD-GKIR---EYELPNKGSYPSF  145 (299)
T ss_dssp             SC-EEEEECSSTTCCEEEEEEC--TTSCEEE--------------EETTTTEEEEECTT-CCEE---EEECSSTTCCEEE
T ss_pred             Cc-EEEEeCCCcCCCceeeEEC--CCCCEEE--------------EecCCceEEEECCC-CCEE---EecCCCCCCCCce
Confidence            32 2222221  1112222222  1122221              11223445555541 1110   1111224457899


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cC
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TD  468 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~  468 (531)
                      +++.+++ ++++...++.|..||. +++.... .. ....+.+++++| +++++++...++.|.+||. +++...+  ..
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  222 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPT  222 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCC
Confidence            9999998 5555556789999999 6665443 22 445688999999 8888777777889999999 6665443  33


Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       469 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      ....+.++++.++|+++++...++.|..||. ++++
T Consensus       223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  257 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII  257 (299)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE
T ss_pred             CCCCceeEEECCCCCEEEeccCCceEEEECC-CCce
Confidence            4567899999999997666667889999998 4543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.22  E-value=1.6e-09  Score=105.62  Aligned_cols=208  Identities=10%  Similarity=-0.019  Sum_probs=132.0

Q ss_pred             eEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccc
Q 009614          278 QEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK  356 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (531)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+......+..+.+.++.  .++..           
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~-----------   85 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIAC-----------   85 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEE-----------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEE-----------
Confidence            34555667788999999998 7888888999999999876  44444433333444433322  22221           


Q ss_pred             ccccCCCceEEEeCCccccccCcceeEeec-CCCCeeEEEEcCCC-eEEE----Ee-------------CCCcEEEEECC
Q 009614          357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNG-FLLS----SS-------------ADKTVRLWQVG  417 (531)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~sp~~-~l~s----~s-------------~Dg~V~lwdl~  417 (531)
                         ...+..+.+|+........ ......+ ....+.+++++|+| ++++    ++             ..+.|..++..
T Consensus        86 ---~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           86 ---SHGLRRLERQREPGGEWES-IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             ---ETTTTEEEEECSTTCCEEE-EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             ---ecCCCeEEEEcCCCCcEEE-EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence               2223456666653322110 0001111 12356789999999 5555    22             12455556555


Q ss_pred             CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC-CCeE---EE-ecCCCCceEEEEEccCCCEEEEEeCCC
Q 009614          418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQV---VD-YTDIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       418 ~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~-~~~~---~~-~~~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                       ++......+......++|+| +++++++.+.++.|++|++. ++++   .. +..+...+..+++.++|+++++.  ++
T Consensus       162 -g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~  237 (296)
T 3e5z_A          162 -GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD  237 (296)
T ss_dssp             -SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred             -CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC
Confidence             55544445667789999999 88888888888999999997 4554   11 22344556789999999866665  78


Q ss_pred             cEEEEeCCCCeEEEEee
Q 009614          493 NCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       493 ~I~iwd~~~~~l~~~~~  509 (531)
                      .|.+||.. ++++..+.
T Consensus       238 ~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          238 GVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             EEEEECTT-SCEEEEEE
T ss_pred             eEEEECCC-CCEEEEEE
Confidence            89999987 66665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=8.7e-10  Score=110.98  Aligned_cols=244  Identities=10%  Similarity=-0.010  Sum_probs=152.2

Q ss_pred             eeeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccceEEccc-------CCCEEEEEEccCCCEEEEEe
Q 009614          241 ATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASGG  303 (531)
Q Consensus       241 ~~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasgs  303 (531)
                      ++++|||+++.++.          .++.|.+||..+....       .++.-.       ...-..+.|+|||++|+.+.
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-------~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-------EEEECCCccccccCCCCceEEEcCCCCEEEEEE
Confidence            89999999887765          4678999999864422       222111       12355789999999998886


Q ss_pred             C--CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc-ccccCcc
Q 009614          304 E--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV-FRLLEKP  380 (531)
Q Consensus       304 ~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  380 (531)
                      .  ++.|.++|+.+++.+..+....    |....+.....++..               +.++.+.+.+... .......
T Consensus       156 ~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~~~~~---------------~~DG~~~~v~~~~~g~v~~~~  216 (386)
T 3sjl_D          156 FSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDTFFMH---------------CRDGSLAKVAFGTEGTPEITH  216 (386)
T ss_dssp             CSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE---------------ETTSCEEEEECCSSSCCEEEE
T ss_pred             cCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCceeEEE---------------CCCCCEEEEECCCCCeEEEee
Confidence            4  6899999999999888876432    222222222112211               2222232222221 1110000


Q ss_pred             eeEeecCCCCee-EEEEc-CCCeEEEEeCCCcEEEEECCCCe--EEEEee-----------cCCceEEEEEeeCCCCEEE
Q 009614          381 LHEFQGHSSEVL-DLSWS-KNGFLLSSSADKTVRLWQVGIDR--CLRVFS-----------HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       381 ~~~~~~h~~~I~-~l~~s-p~~~l~s~s~Dg~V~lwdl~~~~--~l~~~~-----------h~~~V~sv~fsp~d~~~l~  445 (531)
                      ...+......+. ...|. ++|.++..+.+|.|.+.|+.+..  .+..+.           .......++++| +++.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~ly  295 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIY  295 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEE
T ss_pred             cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEE
Confidence            000111112221 23554 56755557778999999997654  332221           122334577798 777666


Q ss_pred             EEeC----------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEEeeee
Q 009614          446 SGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       446 sgs~----------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ....          ...|.+.|+.+++++........+..|+++||++ +|++.. .++.|.++|+.+++++.+++..
T Consensus       296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            6542          2579999999999997666666888999999997 666654 5899999999999999877643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.21  E-value=5e-09  Score=111.77  Aligned_cols=197  Identities=10%  Similarity=0.047  Sum_probs=143.0

Q ss_pred             eeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc--cCcccc
Q 009614          243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLD  320 (531)
Q Consensus       243 fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~--~~~~~~  320 (531)
                      .+|.+.++++...++.|.++|..+....       ..+.. ...+..+.|+|||++|++++.|+.|.+||+.  +++.+.
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~-------~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEE-------EEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEE-------EEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence            4455567778888999999998854422       22322 2356799999999999999999999999985  443221


Q ss_pred             ceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc---
Q 009614          321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS---  397 (531)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s---  397 (531)
                      .                                                              +.. ......++++   
T Consensus       235 ~--------------------------------------------------------------i~~-G~~P~~ia~s~~~  251 (567)
T 1qks_A          235 E--------------------------------------------------------------IKI-GSEARSIETSKME  251 (567)
T ss_dssp             E--------------------------------------------------------------EEC-CSEEEEEEECCST
T ss_pred             E--------------------------------------------------------------Eec-CCCCceeEEcccc
Confidence            1                                                              111 1234688999   


Q ss_pred             -CCC-eEEE-EeCCCcEEEEECCCCeEEEEeec------------CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          398 -KNG-FLLS-SSADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       398 -p~~-~l~s-~s~Dg~V~lwdl~~~~~l~~~~h------------~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                       |+| ++++ ...+++|.++|..+.+.++.+.-            ...+..+.+++....+++....+|+|.++|....+
T Consensus       252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~  331 (567)
T 1qks_A          252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  331 (567)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence             688 5554 45669999999999999887641            12678899998444556666677999999998764


Q ss_pred             EE--EecCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeee
Q 009614          463 VV--DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       463 ~~--~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      .+  ...........+.|+|+|++++++. .++.|.++|+.+++++..+.+
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            33  2333445677899999999987766 578899999999998877654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.19  E-value=3.6e-10  Score=124.21  Aligned_cols=195  Identities=12%  Similarity=0.018  Sum_probs=128.6

Q ss_pred             eeeCCCCeEEeeecCC---eEEEE--eCCCCcccccccccc-eEEcccCCCEEEEEEccCCCEEE-----EEeCCCcEEE
Q 009614          242 TLKPGDHELTLGQRMR---RVRVH--PVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLA-----SGGEDGTVRV  310 (531)
Q Consensus       242 ~fspdg~~lasgs~dg---~I~vw--d~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~La-----sgs~Dg~I~i  310 (531)
                      ..+|+|.+++....++   .-.+|  +.......  .+... ..-.+|...+..++|||||++||     .|+.+.+|++
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v  151 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEK--VLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV  151 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCE--EEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcE--EEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence            3458888887665543   33444  43322211  11000 00124666799999999999998     4445678999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.+++.....                                                            .+..  ..
T Consensus       152 ~dl~tg~~~~~~------------------------------------------------------------~~~~--~~  169 (695)
T 2bkl_A          152 IDVDSGEWSKVD------------------------------------------------------------VIEG--GK  169 (695)
T ss_dssp             EETTTCCBCSSC------------------------------------------------------------CBSC--CT
T ss_pred             EECCCCCCcCCc------------------------------------------------------------ccCc--cc
Confidence            999887632000                                                            0000  01


Q ss_pred             eeEEEEcCCC-eEEEEeCCCc-------------EEEEECCCCeE--EEEee---cCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          391 VLDLSWSKNG-FLLSSSADKT-------------VRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~-------------V~lwdl~~~~~--l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                      ...++|+|+| .|+.++.|..             |++|++.+++.  ...+.   +...+..+.|+| ++++|+.++.++
T Consensus       170 ~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~  248 (695)
T 2bkl_A          170 YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG  248 (695)
T ss_dssp             TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred             ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence            2578999999 8888888776             99999998762  23332   456789999999 899888877666


Q ss_pred             ----eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC----CCcEEEEeCCCCe
Q 009614          452 ----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQ  503 (531)
Q Consensus       452 ----~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~----dg~I~iwd~~~~~  503 (531)
                          .|++|+..+++...+..+...+....+ ++|. |+..+.    ++.|.+||+.+++
T Consensus       249 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          249 WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence                788888777666666666666666667 6777 555443    5789999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.18  E-value=3.5e-09  Score=116.60  Aligned_cols=200  Identities=9%  Similarity=-0.011  Sum_probs=136.0

Q ss_pred             ccceeeeCCCCeEEeeecCCe----------------EEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE
Q 009614          238 HGSATLKPGDHELTLGQRMRR----------------VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~----------------I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las  301 (531)
                      +..++|+|||+.|+.++.++.                |++|++.+......   .......|...+..+.|+|||++|+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~---~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI---LCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE---EEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce---EEeccCCCCeEEEEEEEcCCCCEEEE
Confidence            556899999999998887765                99999976543211   00011235666889999999999988


Q ss_pred             EeC-----CCcEEEEEccc------CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeC
Q 009614          302 GGE-----DGTVRVWKVIE------HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP  370 (531)
Q Consensus       302 gs~-----Dg~I~iWd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (531)
                      ++.     +..|.+||+.+      +..                                                    
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~----------------------------------------------------  277 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGIL----------------------------------------------------  277 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSC----------------------------------------------------
T ss_pred             EEEccCCCccEEEEEECcccccccCCcc----------------------------------------------------
Confidence            765     56788888865      210                                                    


Q ss_pred             CccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC----CcEEEEECCCCe---EEEEeecCC--ceEEEEEeeCC
Q 009614          371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----KTVRLWQVGIDR---CLRVFSHNN--YVTSVAFNPVD  440 (531)
Q Consensus       371 ~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D----g~V~lwdl~~~~---~l~~~~h~~--~V~sv~fsp~d  440 (531)
                               ....+..+...+.. .|+|+| .|+..+..    ..|.+||+.++.   ....+.|..  .+..++|++ +
T Consensus       278 ---------~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  346 (710)
T 2xdw_A          278 ---------KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-S  346 (710)
T ss_dssp             ---------CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-T
T ss_pred             ---------ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-C
Confidence                     01122233334433 477777 55554443    369999998764   233444443  688899987 7


Q ss_pred             CCEEEEEeCCCe--EEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeC----CCcEEEEeCCCCe
Q 009614          441 DNYFISGSIDGK--VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQ  503 (531)
Q Consensus       441 ~~~l~sgs~Dg~--I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~----dg~I~iwd~~~~~  503 (531)
                      +.++++...|+.  |.+|++.+++.+ .+..+...+..++++|++..|+....    .+.|++||+.+++
T Consensus       347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            788888888884  666787666644 45556677889999999987664432    4689999998876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.18  E-value=1.6e-08  Score=98.78  Aligned_cols=212  Identities=12%  Similarity=0.102  Sum_probs=139.4

Q ss_pred             ceeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       240 s~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ...|+|+ +.++++....+.|..|+.......         ...+...+.+++++++|+++++ . ++.|.+||..+++.
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence            4688985 456667777899999998754321         1123567999999999995554 3 56788999876542


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      .......                                                          .......+++++++|
T Consensus        86 ~~~~~~~----------------------------------------------------------~~~~~~~~~di~~d~  107 (297)
T 3g4e_A           86 VVLATVD----------------------------------------------------------NDKKNNRFNDGKVDP  107 (297)
T ss_dssp             EEEEECC----------------------------------------------------------TTCSSEEEEEEEECT
T ss_pred             EEEEecC----------------------------------------------------------CCCCCCCCCCEEECC
Confidence            1100000                                                          000123467899999


Q ss_pred             CCeEEEEe-C---------CCcEEEEECCC-CeEEEEeecCCceEEEEEeeCCCCEE-EEEeCCCeEEEEeC--CCCeEE
Q 009614          399 NGFLLSSS-A---------DKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEV--RRCQVV  464 (531)
Q Consensus       399 ~~~l~s~s-~---------Dg~V~lwdl~~-~~~l~~~~h~~~V~sv~fsp~d~~~l-~sgs~Dg~I~Iwd~--~~~~~~  464 (531)
                      +|.|+.++ .         .....||.+.. ++......+....+.++|+| +++.| ++.+.++.|.+|++  .++.+.
T Consensus       108 dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~  186 (297)
T 3g4e_A          108 AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQIS  186 (297)
T ss_dssp             TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred             CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCccc
Confidence            99333333 1         13345555543 34444444555678999999 88755 55566889999987  455432


Q ss_pred             ------EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          465 ------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       465 ------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                            .+......+..+++.++|++.++....+.|..||..+++++..+...        ...+++++|.
T Consensus       187 ~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p--------~~~~t~~~f~  249 (297)
T 3g4e_A          187 NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP--------VDKTTSCCFG  249 (297)
T ss_dssp             EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS--------SSBEEEEEEE
T ss_pred             CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC--------CCCceEEEEe
Confidence                  12233456889999999988877777888999999999988766532        3467888886

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=8.3e-09  Score=110.03  Aligned_cols=260  Identities=12%  Similarity=0.075  Sum_probs=161.6

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCC--CCcccccccccceEEcccCCCEEEEEEc----cCCCEEEEEeC-CCcEEEEE
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFS----LDGQYLASGGE-DGTVRVWK  312 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~--~~~~~~~~~~~~~~l~~H~~~I~~l~fs----pdg~~Lasgs~-Dg~I~iWd  312 (531)
                      .+.|+|||+++++++.++.|.+||+.  +...       ...+.... ....++|+    |||++++++.. +++|.|+|
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-------v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-------VAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCE-------EEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-------eEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            58999999999999999999999985  2221       12343322 35789999    69999888765 59999999


Q ss_pred             cccCccccceecCCC-----------CCeeEEEeec---------CCcceeeeeccccc-----------c---------
Q 009614          313 VIEHERLDGFDVQDT-----------DPSCLYFTIN---------HLSQLIPIDVDKEK-----------I---------  352 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~---------~~~~~~~~~~~~~~-----------~---------  352 (531)
                      ..+.+.+..+.....           .+..+..+..         ..+.+..++.....           .         
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd  352 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS  352 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCC
Confidence            998887776654211           1112222211         11222222221110           0         


Q ss_pred             ccccccccCCCceEEEeCCccccccCccee-EeecCCCCeeEEEEcCCC--eEEEEe-CCCcEEEEECCC-------CeE
Q 009614          353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG--FLLSSS-ADKTVRLWQVGI-------DRC  421 (531)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~l~~sp~~--~l~s~s-~Dg~V~lwdl~~-------~~~  421 (531)
                      .....+....+..+.+++.....+....-. ....|.+.-..+ ++|++  .++++. .+++|.++|..+       .+.
T Consensus       353 gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence            011112233445566666665433211100 011244322222 57875  444554 568999999987       567


Q ss_pred             EEEeecC-CceEEEEEeeCCCCEEEEEeC-------CCeEEEEeCCCC---------eEEEe---c---CCCCceEEEEE
Q 009614          422 LRVFSHN-NYVTSVAFNPVDDNYFISGSI-------DGKVRIWEVRRC---------QVVDY---T---DIREIVSAVCY  478 (531)
Q Consensus       422 l~~~~h~-~~V~sv~fsp~d~~~l~sgs~-------Dg~I~Iwd~~~~---------~~~~~---~---~~~~~v~~v~~  478 (531)
                      ++.+... ..-..|..+| +++++.+...       .+.|.|+|+.+.         +++..   .   .....+..+.|
T Consensus       432 v~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (567)
T 1qks_A          432 LDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF  510 (567)
T ss_dssp             EEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred             EEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE
Confidence            7777633 3334577899 8888888663       359999999876         33321   1   12457899999


Q ss_pred             ccCCCEEEEEeC-----CCcEEEEeCCCCeEEEEee
Q 009614          479 CPDGKGGIVGTM-----TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       479 spdg~~l~sgs~-----dg~I~iwd~~~~~l~~~~~  509 (531)
                      +|+|+++.++..     ++.|.|+|..+++++..++
T Consensus       511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          511 NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            999998887643     7899999999999987765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=3e-09  Score=117.72  Aligned_cols=200  Identities=10%  Similarity=-0.013  Sum_probs=126.7

Q ss_pred             cccceeeeCCCCeEEeeecC-----CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc----
Q 009614          237 RHGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----  307 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~d-----g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~----  307 (531)
                      .+...+|+|||++||.+..+     ..|++||+.++....        ...+...+..++|+|| +.|+.++.|+.    
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--------EEEEEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--------ccCCCceeccEEEECC-CEEEEEEecCccccc
Confidence            34467999999999876554     469999998665321        1111112357899999 99988887664    


Q ss_pred             ----------EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc
Q 009614          308 ----------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL  377 (531)
Q Consensus       308 ----------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (531)
                                |++|++.++....                                                         
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~---------------------------------------------------------  257 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSAD---------------------------------------------------------  257 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGC---------------------------------------------------------
T ss_pred             ccccCCCCCEEEEEECCCCchhC---------------------------------------------------------
Confidence                      4455543332100                                                         


Q ss_pred             CcceeEeecCCCCeeEEEEcCCC-eEEEEeCC-----CcEEEEECCCC--e-EEEEeecCCceEEEEEeeCCCCEEEEEe
Q 009614          378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGID--R-CLRVFSHNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       378 ~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D-----g~V~lwdl~~~--~-~l~~~~h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                       ..+.....+...+..+.|+|+| +|+..+.+     ..|.+||+.++  + ......+...+.... .| +++.|+..+
T Consensus       258 -~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s  334 (741)
T 1yr2_A          258 -QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVS  334 (741)
T ss_dssp             -EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEE
T ss_pred             -EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEE
Confidence             0011112234457899999999 66666644     37999999877  4 333334555555553 47 788777776


Q ss_pred             C----CCeEEEEeCCCC--eEEEe-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEEE
Q 009614          449 I----DGKVRIWEVRRC--QVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQ  506 (531)
Q Consensus       449 ~----Dg~I~Iwd~~~~--~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~-~~~l~~  506 (531)
                      .    ++.|.+||+.++  ....+ ..+...+..++|. ++.++++...+|..+||.+. +++...
T Consensus       335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             CTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             CCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence            5    356999999874  44443 3344456677887 66778888889987777554 344443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.14  E-value=5.8e-09  Score=100.96  Aligned_cols=189  Identities=10%  Similarity=0.081  Sum_probs=136.8

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCccccceecCC-CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc
Q 009614          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV  373 (531)
Q Consensus       295 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (531)
                      .+++|++++.|+.|.+||..+++.+..+.... ..+..+.+.++.  .++.                +.+..+..+++ .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG--~ilv----------------s~~~~V~~~d~-~   64 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG--EILF----------------SYSKGAKMITR-D   64 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS--CEEE----------------ECBSEEEEECT-T
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC--CEEE----------------eCCCCEEEECC-C
Confidence            46789999999999999999999988887654 244445544433  1221                11233555554 2


Q ss_pred             ccccCcceeEeecC-CCCeeEEEEcCCC-eEEEEeC-CCcEEEEECCCCeEEEEeec-------CCceEEEEEeeCCCCE
Q 009614          374 FRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNY  443 (531)
Q Consensus       374 ~~~~~~~~~~~~~h-~~~I~~l~~sp~~-~l~s~s~-Dg~V~lwdl~~~~~l~~~~h-------~~~V~sv~fsp~d~~~  443 (531)
                          .+.+..+..+ ...+.++.+.++| ++++.+. ++.|..+|. +++.+..+..       ......+++.+ ++++
T Consensus        65 ----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~  138 (276)
T 3no2_A           65 ----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNY  138 (276)
T ss_dssp             ----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCE
T ss_pred             ----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCE
Confidence                2334555544 3468889999999 7777776 777888875 6777766641       12345567888 9999


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +++...++.|..||.. ++.+-.......+.++...++|++++++..++.|..+|..+|+++.++.
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            9999999999999998 7776433334556778889999999999988899999999999988775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.14  E-value=9.9e-09  Score=103.41  Aligned_cols=216  Identities=9%  Similarity=0.043  Sum_probs=132.3

Q ss_pred             ccceeeeCCCCeEEeeec--CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcc
Q 009614          238 HGSATLKPGDHELTLGQR--MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~--dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~  314 (531)
                      ...++|+|+|++|+++..  ++.|.+||.......       ..+..+ .....+.+.|++ ..+++.+.||.+.+|++.
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~-------~~~i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV-------EDVTAA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE-------EEEGGG-TTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE-------EEEecC-CCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence            445899999999988764  589999999865321       120112 223345677865 678888899999999986


Q ss_pred             c-Cccccce------ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee--
Q 009614          315 E-HERLDGF------DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--  385 (531)
Q Consensus       315 ~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  385 (531)
                      . ++.....      ..... +..+...+... .               .+..+.++.+.+++...-...  .+..+.  
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~-~---------------~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~  242 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDD-PIFIAPALDKD-K---------------AHFVSYYGNVYSADFSGDEVK--VDGPWSLL  242 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTS-CBCSCCEECSS-E---------------EEEEBTTSEEEEEECSSSSCE--EEEEEESC
T ss_pred             CCCcEeeeccccceEcCCCC-ceEEEecccCC-E---------------EEEEeCCCeEEEEEecCCCce--eccccccc
Confidence            5 3322111      10000 00000000000 0               000111233444433211000  000000  


Q ss_pred             ----cC----CCCeeEEEEcCCC-eEEEEeC-----------CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          386 ----GH----SSEVLDLSWSKNG-FLLSSSA-----------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       386 ----~h----~~~I~~l~~sp~~-~l~s~s~-----------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                          .+    ......++++|++ .++.+..           ...|.+||+.+++.+..+.-.. +.+|+|+| ++++|+
T Consensus       243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~  320 (361)
T 2oiz_A          243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLML  320 (361)
T ss_dssp             CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEE
T ss_pred             CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEE
Confidence                00    1122237889987 5554432           3589999999999999987445 99999999 999999


Q ss_pred             EEeCCCeEEEEeCCCC--eEEEe-cCCCCceEEEEEccCCC
Q 009614          446 SGSIDGKVRIWEVRRC--QVVDY-TDIREIVSAVCYCPDGK  483 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~--~~~~~-~~~~~~v~~v~~spdg~  483 (531)
                      +++. +.|.|||+.++  +++.. ..+......++++|+|.
T Consensus       321 v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          321 TLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            8887 99999999999  88875 57788889999999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.14  E-value=1.6e-08  Score=103.66  Aligned_cols=234  Identities=14%  Similarity=0.057  Sum_probs=147.7

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcc
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVI  314 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~  314 (531)
                      ....++|++++.++++...++.|++|+........       .... ..... ++|+++++.|+++..++  .|.+|+..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-------~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-------VHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-------EEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-------eecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            34468999999988888888999999987543221       1112 22233 89999999999988866  78888876


Q ss_pred             cCccccce----ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE--eecCC
Q 009614          315 EHERLDGF----DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE--FQGHS  388 (531)
Q Consensus       315 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~  388 (531)
                      ++.....+    ......+..+.+.+... .++.               ...++.++.|+......  ..+..  ..++.
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv---------------~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~  264 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYF---------------VDSNKNFGRFNVKTQEV--TLIKQLELSGSL  264 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEE---------------ECTTCEEEEEETTTCCE--EEEEECCCCSCC
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCC-eEEE---------------EECCCcEEEEECCCCCE--EEEecccccCCC
Confidence            65432222    10222333333333211 1111               11233455554432110  00000  11222


Q ss_pred             CCe--eEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEeecC---------------CceEEEEEeeCCCCEEEEEe-
Q 009614          389 SEV--LDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFSHN---------------NYVTSVAFNPVDDNYFISGS-  448 (531)
Q Consensus       389 ~~I--~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~---------------~~V~sv~fsp~d~~~l~sgs-  448 (531)
                      ..-  ..++|+|+ + ++++....+.|+.|+.... ......+.               .....|+++| +++++++-. 
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~  342 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGF  342 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETT
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCC
Confidence            222  39999995 5 5666667889999997654 22222222               3578999999 888888888 


Q ss_pred             CCCeEEEEeCCCCeEEEecCC---------------CCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          449 IDGKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~~~~~~---------------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      .++.|+.|++.++.+..+.++               -.....|++.|+|.++++-..+++|+.+++
T Consensus       343 ~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            889999999888887765544               245889999999888888888888888775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.13  E-value=8.6e-08  Score=92.59  Aligned_cols=232  Identities=5%  Similarity=0.003  Sum_probs=144.6

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      +..++++++|.+.++...++.|..|+.......   .    .+..+...+.+|++.++|+++++...++.|.+||. +++
T Consensus        59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~---~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           59 VMCLTISSDGEVWFTENAANKIGRITKKGIIKE---Y----TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---E----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             eeeEEECCCCCEEEeCCCCCeEEEECCCCcEEE---E----eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            445789999998888777889999987521111   0    11224557899999999988888777889999998 443


Q ss_pred             cccceecC--CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          318 RLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       318 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .. .+...  ...+..+.+.  ....+..              .......+..++. ...+.   ......+...+..++
T Consensus       131 ~~-~~~~~~~~~~~~~i~~~--~~g~l~v--------------~~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~i~  189 (299)
T 2z2n_A          131 IR-EYELPNKGSYPSFITLG--SDNALWF--------------TENQNNAIGRITE-SGDIT---EFKIPTPASGPVGIT  189 (299)
T ss_dssp             EE-EEECSSTTCCEEEEEEC--TTSCEEE--------------EETTTTEEEEECT-TCCEE---EEECSSTTCCEEEEE
T ss_pred             EE-EecCCCCCCCCceEEEc--CCCCEEE--------------EeCCCCEEEEEcC-CCcEE---EeeCCCCCCcceeEE
Confidence            22 22111  1112222221  1122221              1122344555554 21110   011223445688999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCC
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR  470 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~~  470 (531)
                      +.+++ ++++...++.|.+||. +++.... .. +...+.+|+++| +++++++...++.|.+||. +++...+  ..+.
T Consensus       190 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~  266 (299)
T 2z2n_A          190 KGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKS  266 (299)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSS
T ss_pred             ECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCC
Confidence            99998 5555556789999999 6654332 11 446789999999 8887777667899999999 4555443  3445


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      ..+.++++ ++|.++++.. .+.+..++..+++
T Consensus       267 ~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          267 AEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             CCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             CccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            67899999 8888666655 5677788876654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.12  E-value=4.6e-09  Score=104.33  Aligned_cols=203  Identities=7%  Similarity=-0.049  Sum_probs=137.6

Q ss_pred             ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEE
Q 009614          254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY  333 (531)
Q Consensus       254 s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  333 (531)
                      +.++.|.++|..+...... .+....-.........+.+. +++++++...++.|.+||..+++.+..+.          
T Consensus        14 ~~~~~l~~~d~~t~~~~~~-i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----------   81 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENE-VFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----------   81 (328)
T ss_dssp             SCCBEEEEEETTTTEEECS-HHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----------
T ss_pred             CCCceEEEEECCCCEEhhh-hHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----------
Confidence            3489999999986553221 11100000112346778874 45555666668999999998876533321          


Q ss_pred             EeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEe-CCCcEE
Q 009614          334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVR  412 (531)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s-~Dg~V~  412 (531)
                                                                           .......+++++++.++.+. .++.|.
T Consensus        82 -----------------------------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~  108 (328)
T 3dsm_A           82 -----------------------------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIF  108 (328)
T ss_dssp             -----------------------------------------------------CCSSEEEEEEEETTEEEEEEBSCSEEE
T ss_pred             -----------------------------------------------------CCCCCcEEEEeCCCeEEEEECCCCeEE
Confidence                                                                 12456788888888555554 889999


Q ss_pred             EEECCCCeEEEEeecCC------ceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEE
Q 009614          413 LWQVGIDRCLRVFSHNN------YVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       413 lwdl~~~~~l~~~~h~~------~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l  485 (531)
                      +||..+++....+....      ....|++ . ++.++++.. .++.|.+||+.+++++...........++++|+|+++
T Consensus       109 ~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~  186 (328)
T 3dsm_A          109 IINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMW  186 (328)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred             EEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEE
Confidence            99999999888776443      5667787 4 555555554 4899999999999887654445566789999999977


Q ss_pred             EEEeCC----------CcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          486 IVGTMT----------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       486 ~sgs~d----------g~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +++..+          +.|.+||..++++...+.+..       +....+++|+|
T Consensus       187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-------g~~p~~la~~~  234 (328)
T 3dsm_A          187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-------GDWPSEVQLNG  234 (328)
T ss_dssp             EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-------TCCCEEEEECT
T ss_pred             EEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-------CCCceeEEEec
Confidence            776554          789999999998876654321       12446666654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.10  E-value=1.8e-07  Score=90.40  Aligned_cols=236  Identities=6%  Similarity=-0.007  Sum_probs=151.3

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      ...++++.++|.+.++...++.|.+|+.. ....  ..    .+..+...+.+|++.++|+++++...++.|..||.. +
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~--~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK--EF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-CceE--EE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34468899999988887778999999876 2221  10    122344679999999999988877778889999987 4


Q ss_pred             ccccceecC--CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          317 ERLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       317 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      +. ..+...  ...+..+.+.  ....+...              ......+..++.. ....   ...+......+..+
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~--------------~~~~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITEG--LNGDIWFT--------------QLNGDRIGKLTAD-GTIY---EYDLPNKGSYPAFI  151 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEEC--STTCEEEE--------------ETTTTEEEEECTT-SCEE---EEECSSTTCCEEEE
T ss_pred             Ce-EEecCCCCCCCCccceEC--CCCCEEEE--------------ccCCCeEEEECCC-CCEE---EccCCCCCCCceeE
Confidence            43 222221  1112222222  22222221              1223345555443 1111   11122234578899


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCC
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDI  469 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~  469 (531)
                      ++.+++ ++++...++.|..||. +++.....  .+...+.++++++ +++++++....+.|.+|+. +++....  ...
T Consensus       152 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~  228 (300)
T 2qc5_A          152 TLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTP  228 (300)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             EECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCC
Confidence            999998 5555555788999998 55544322  1345689999999 8888877777789999999 5554433  334


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ...+.++++.++|++.++...++.|..|+. +++..
T Consensus       229 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  263 (300)
T 2qc5_A          229 NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ  263 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred             CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE
Confidence            567899999999997776666789999998 45443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.09  E-value=5.9e-08  Score=96.15  Aligned_cols=209  Identities=14%  Similarity=0.087  Sum_probs=134.2

Q ss_pred             ceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcc
Q 009614          240 SATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       240 s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~  318 (531)
                      ...|+|++ .+++++..++.|.+|+.......        .+ .+...|.++.|+++|+++++. .++ |.+||..+++.
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------~~-~~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~  121 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKT--------VH-ALPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVL  121 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------EE-ECSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------EE-ECCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcE
Confidence            46899974 45667777899999998754321        11 134579999999999877754 444 88888766542


Q ss_pred             ccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcC
Q 009614          319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK  398 (531)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp  398 (531)
                      .. +....                                                         .......+.+++++|
T Consensus       122 ~~-~~~~~---------------------------------------------------------~~~~~~~~~~i~~d~  143 (326)
T 2ghs_A          122 TL-HAELE---------------------------------------------------------SDLPGNRSNDGRMHP  143 (326)
T ss_dssp             EE-EECSS---------------------------------------------------------TTCTTEEEEEEEECT
T ss_pred             EE-EeeCC---------------------------------------------------------CCCCCCCCCCEEECC
Confidence            10 00000                                                         000123477899999


Q ss_pred             CCeEEEEeC-------CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEE-EeCCCeEEEEeCC--CC-e-----
Q 009614          399 NGFLLSSSA-------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVR--RC-Q-----  462 (531)
Q Consensus       399 ~~~l~s~s~-------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~s-gs~Dg~I~Iwd~~--~~-~-----  462 (531)
                      +|.++.++.       .+.|..++  +++......+......++|+| +++.++. .+.++.|.+|++.  ++ .     
T Consensus       144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~  220 (326)
T 2ghs_A          144 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  220 (326)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence            993333332       24455555  555444334445678999999 8876644 4567899999986  55 2     


Q ss_pred             EE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       463 ~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      .+ .+......+..+++.++|.+.++...++.|.+||. +++++..+..        +...+++++|.
T Consensus       221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------~~~~~~~~af~  279 (326)
T 2ghs_A          221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--------PGKQTTCPAFI  279 (326)
T ss_dssp             EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--------SCSBEEEEEEE
T ss_pred             EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--------CCCCcEEEEEe
Confidence            22 22233456788999999987777766788999998 5666654432        23467888876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.05  E-value=1.1e-08  Score=104.64  Aligned_cols=242  Identities=9%  Similarity=-0.048  Sum_probs=149.8

Q ss_pred             ceeeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccceEEc-c------cCCCEEEEEEccCCCEEEEE
Q 009614          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFL-A------HEGSILTMKFSLDGQYLASG  302 (531)
Q Consensus       240 s~~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~~~l~-~------H~~~I~~l~fspdg~~Lasg  302 (531)
                      .++++|||+++.++.          .++.|.++|..+....       ..+. +      .......+.|+|||++|+.+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv-------~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~  194 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFLVGTYQWMNALTPDNKNLLFY  194 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-------EEEEETTCCCCCBSCCGGGSEECTTSSEEEEE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE-------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence            589999999988775          4678999998865432       1221 1      01234578999999999988


Q ss_pred             eC--CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          303 GE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       303 s~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      ..  ++.|.+.|+.+++.+..+....    +....+.....++...               .++.+.+.+..........
T Consensus       195 n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~---------------~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          195 QFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNC---------------RDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             ECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEE---------------TTSSEEEEECCTTCCEEEE
T ss_pred             ecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEc---------------CCCCEEEEECCCCcEEEEe
Confidence            74  5789999999999887776532    1112221111111111               1222222211110000000


Q ss_pred             eeEeecCCCCe-eEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE--EEee-----------cCCceEEEEEeeCCCCEEE
Q 009614          381 LHEFQGHSSEV-LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL--RVFS-----------HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       381 ~~~~~~h~~~I-~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l--~~~~-----------h~~~V~sv~fsp~d~~~l~  445 (531)
                      ...+.....++ ..+.+.+++ .++..+..+.|.+.|+......  ..+.           .......++++| +++.++
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rly  334 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIY  334 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEE
Confidence            00011111111 235677877 6666677889999998765422  1111           111222378999 777665


Q ss_pred             EEeC----------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeEEEEe
Q 009614          446 SGSI----------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       446 sgs~----------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~~~~l~~~~  508 (531)
                      +...          ++.|.++|+.+.+++...........++|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            5432          3579999999999987555555789999999999 888888 4899999999999998775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.02  E-value=5.7e-08  Score=92.70  Aligned_cols=196  Identities=12%  Similarity=-0.038  Sum_probs=125.6

Q ss_pred             CEEEEEEccCCCEEE-EEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614          286 SILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (531)
Q Consensus       286 ~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (531)
                      ...+|+++++|++++ +...++.|.+|+..+.............+..+.+.++.  .++..              .. ++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g--~l~v~--------------~~-~~   87 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG--TVYVT--------------DF-NN   87 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC--CEEEE--------------ET-TT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC--CEEEE--------------cC-CC
Confidence            678999999999777 44678999999976544221111111223333333221  12211              11 34


Q ss_pred             eEEEeCCccccccCcceeEee-cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCC
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD  441 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~  441 (531)
                      .+..|+.....     ...+. .....+..+++.++| ++++...++.|.+|+..+....... .....+.+|+++| ++
T Consensus        88 ~i~~~d~~~~~-----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g  161 (270)
T 1rwi_B           88 RVVTLAAGSNN-----QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SG  161 (270)
T ss_dssp             EEEEECTTCSC-----CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TC
T ss_pred             EEEEEeCCCce-----EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CC
Confidence            55666544321     11122 233568899999998 6666667889999987655443222 2334678999999 88


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEEEe-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          442 NYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      +++++...++.|.+||......... ......+..+++.++|.++++...++.|.+|+..+...
T Consensus       162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          162 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            8888877789999999988776543 23336789999999998777777788999999876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.96  E-value=1.4e-07  Score=91.96  Aligned_cols=112  Identities=10%  Similarity=0.081  Sum_probs=82.1

Q ss_pred             CCeeEEEEc----CCC-eEEEE-eCCCcEEEEECC-CCeE-----EEEee-cC-CceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          389 SEVLDLSWS----KNG-FLLSS-SADKTVRLWQVG-IDRC-----LRVFS-HN-NYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       389 ~~I~~l~~s----p~~-~l~s~-s~Dg~V~lwdl~-~~~~-----l~~~~-h~-~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      .....++|+    |++ .|+.+ ..++.|.+||+. .++.     ...+. +. ..+..+++++ +++++++...++.|.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEE
Confidence            345788899    988 55444 567899999986 4442     12222 22 5688999999 899888888889999


Q ss_pred             EEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q 009614          455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKD  501 (531)
Q Consensus       455 Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~~  501 (531)
                      +||..+++.+ .+..+...+.+++|+|+|+.|+++ ..++.|..|++..
T Consensus       251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999866543 344445789999999999955554 4567899999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.96  E-value=2.6e-08  Score=99.45  Aligned_cols=209  Identities=11%  Similarity=0.092  Sum_probs=130.0

Q ss_pred             cccceeeeCCCCeEEeee--cCCeEEEEeCCCCcccccccccc-eEEcccCCCEEEEEEccCCCEEEEEeC-----CCcE
Q 009614          237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV  308 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs--~dg~I~vwd~~~~~~~~~~~~~~-~~l~~H~~~I~~l~fspdg~~Lasgs~-----Dg~I  308 (531)
                      ....++++|+|+++++..  .++.++||.+..+.  +..+... ....+|-..+.+|+++++|+++++-..     ++.|
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            455689999999988854  23435555554221  1111000 112346678999999999876665433     5789


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      .+||+.+++.+..+.....                                                        ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~--------------------------------------------------------~~~~~  119 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPP--------------------------------------------------------ITLSN  119 (343)
T ss_dssp             EEEETTTTEEEEEEECCTT--------------------------------------------------------TSCTT
T ss_pred             EEEECCCCeEEEEEECChh--------------------------------------------------------hcccc
Confidence            9999988765443322110                                                        00123


Q ss_pred             CCeeEEEEcCC-C-eEEEEe---CCCcEEEEECCCCeEEEEeec------------------------------CCceEE
Q 009614          389 SEVLDLSWSKN-G-FLLSSS---ADKTVRLWQVGIDRCLRVFSH------------------------------NNYVTS  433 (531)
Q Consensus       389 ~~I~~l~~sp~-~-~l~s~s---~Dg~V~lwdl~~~~~l~~~~h------------------------------~~~V~s  433 (531)
                      ..+..++++++ + .+++..   .++.|.+||+.+++..+.+..                              ...+..
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g  199 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG  199 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence            34577888865 4 344444   577888888887766554421                              023688


Q ss_pred             EEEeeCCCCEEEEEeCCC-eEEEEeCC---CCe-----E---EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          434 VAFNPVDDNYFISGSIDG-KVRIWEVR---RCQ-----V---VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg-~I~Iwd~~---~~~-----~---~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      |+|+| +++.|+.+..++ .|..++..   .+.     +   +...++......+++.++|.++++...++.|.+||..+
T Consensus       200 ia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~  278 (343)
T 2qe8_A          200 IVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD  278 (343)
T ss_dssp             EEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred             eEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence            99999 888888877665 45544431   111     0   11112333556799999999999988899999999966


Q ss_pred             CeE
Q 009614          502 NQL  504 (531)
Q Consensus       502 ~~l  504 (531)
                      +++
T Consensus       279 G~~  281 (343)
T 2qe8_A          279 RAY  281 (343)
T ss_dssp             TEE
T ss_pred             CCE
Confidence            764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.93  E-value=1.2e-07  Score=92.93  Aligned_cols=234  Identities=9%  Similarity=-0.042  Sum_probs=136.1

Q ss_pred             cceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       239 ~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      ....|+|+|+ +++++..++.|..|+... ..        ..+..+...+..++++++|+++++...++.|.+|+.. ++
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~--------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV--------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEETTS-CE--------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE--------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            3478999998 667777889999998742 21        1344466779999999999977666566889999875 43


Q ss_pred             cccceecC-C----CCCeeEEEeecCCcceeeeeccccccc---cccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          318 RLDGFDVQ-D----TDPSCLYFTINHLSQLIPIDVDKEKID---KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       318 ~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      . ..+... .    ..+..+.+.+  .+.+...+.......   ............++.++.....+     ..+. +..
T Consensus       118 ~-~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-----~~~~-~~~  188 (305)
T 3dr2_A          118 A-HLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-----QRMA-DLD  188 (305)
T ss_dssp             E-EEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-----EEEE-EES
T ss_pred             E-EEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-----EEEe-cCC
Confidence            2 111110 0    1122233222  222222111000000   00000011224566666533221     1122 334


Q ss_pred             CeeEEEEcCCC-eEEEEeCC------CcEEEEECCCCeEE--EEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          390 EVLDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCL--RVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~D------g~V~lwdl~~~~~l--~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ....++|+|++ .|+.+...      +.|.+|++..+...  ..+.  .......+++++ ++++.++. .+ .|.+|+.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDS  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECC
Confidence            56789999999 67666554      78999998765411  1221  234456789998 88855544 44 5999999


Q ss_pred             CCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEE
Q 009614          459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (531)
Q Consensus       459 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~  495 (531)
                      .......+... ..+..++|.|+++.|++++.++..+
T Consensus       266 ~g~~~~~~~~~-~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          266 DGQLLGHIPTP-GTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             TSCEEEEEECS-SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCCEEEEEECC-CceeEEEEeCCCCEEEEEcCCeEEE
Confidence            54433334333 3688999999999898888765333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.93  E-value=5.9e-08  Score=106.52  Aligned_cols=197  Identities=10%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             ccceeeeCCCCeEEe-----eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCc-----
Q 009614          238 HGSATLKPGDHELTL-----GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT-----  307 (531)
Q Consensus       238 ~~s~~fspdg~~las-----gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~-----  307 (531)
                      +..++|+|||++||-     |+....|++||+.++.....      .+.+.  ....++|+ ||+.|+.+..+..     
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------EEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------ccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence            445689999999984     44456899999987653110      11111  12567899 9999999887743     


Q ss_pred             --------EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          308 --------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       308 --------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                              |++|++.+.....                                                          .
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~----------------------------------------------------------~  223 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDD----------------------------------------------------------R  223 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGC----------------------------------------------------------E
T ss_pred             cccCCCcEEEEEECCCCcccc----------------------------------------------------------e
Confidence                    6666655433110                                                          0


Q ss_pred             ceeEeec-CCCCeeEEEEcCCC-eE-EEEeC---CCcEEEEECCCC--eEEEEeecCCceEEEEEeeCCCCEEEEEeCC-
Q 009614          380 PLHEFQG-HSSEVLDLSWSKNG-FL-LSSSA---DKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDDNYFISGSID-  450 (531)
Q Consensus       380 ~~~~~~~-h~~~I~~l~~sp~~-~l-~s~s~---Dg~V~lwdl~~~--~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D-  450 (531)
                      .+..... |...+..+.|+|+| +| ++.+.   ...|.++|+.++  .......+....... |++.++.+++....+ 
T Consensus       224 ~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~  302 (693)
T 3iuj_A          224 LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA  302 (693)
T ss_dssp             EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred             EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCC
Confidence            1122223 44557789999999 44 44432   358999999876  334444455555555 566244444454443 


Q ss_pred             --CeEEEEeCCCCeE---EEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeE
Q 009614          451 --GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQL  504 (531)
Q Consensus       451 --g~I~Iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~l  504 (531)
                        +.|.++|+.++..   ..+..+...+.  .|+++++.|+....++   .|++|++.++..
T Consensus       303 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~  362 (693)
T 3iuj_A          303 PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV  362 (693)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE
T ss_pred             CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee
Confidence              6899999988654   34555655555  8999999888776544   689999986543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.92  E-value=9.7e-07  Score=85.12  Aligned_cols=229  Identities=5%  Similarity=0.005  Sum_probs=141.1

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      +..+++.++|.+.++...++.|..++.. ....  .    ..+......+.++++.++|+++++...++.|..|+.. ++
T Consensus        64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--~----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--E----YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--E----EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--E----ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence            3457888999888877778899999876 2221  0    0122234678999999999988877778899999986 44


Q ss_pred             cccceecC--CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          318 RLDGFDVQ--DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       318 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .. .+...  ...+..+.+.  ....+...              ......+..++.. ....   ......+...+..++
T Consensus       136 ~~-~~~~~~~~~~~~~i~~d--~~g~l~v~--------------~~~~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i~  194 (300)
T 2qc5_A          136 IY-EYDLPNKGSYPAFITLG--SDNALWFT--------------ENQNNSIGRITNT-GKLE---EYPLPTNAAAPVGIT  194 (300)
T ss_dssp             EE-EEECSSTTCCEEEEEEC--TTSSEEEE--------------ETTTTEEEEECTT-CCEE---EEECSSTTCCEEEEE
T ss_pred             EE-EccCCCCCCCceeEEEC--CCCCEEEE--------------ecCCCeEEEECCC-CcEE---EeeCCCCCCCcceEE
Confidence            32 22211  1122222222  21222221              1223344455441 1110   011223445788999


Q ss_pred             EcCCC-eEEEEeCCCcEEEEECCCCeEEEE-ee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCC
Q 009614          396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR  470 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~~  470 (531)
                      +.+++ ++++....+.|.+||. +++.... .. +...+.+|++++ +++++++...++.|..||. +++...+  ....
T Consensus       195 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  271 (300)
T 2qc5_A          195 SGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTEN  271 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTT
T ss_pred             ECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccC
Confidence            99988 4445455678999998 5544433 22 456789999999 8887777767799999998 4554433  3334


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       471 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      ..+.++++.++|+++++.. . .|..+|.+
T Consensus       272 ~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          272 AEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            5688999999998655544 4 67777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.88  E-value=2.8e-10  Score=115.18  Aligned_cols=189  Identities=11%  Similarity=0.095  Sum_probs=102.9

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      ++..+++++.||.|+.||..+++....       +..  +.+.+..+..++..+++++.||.|+.||..+++.+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE-------EEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE-------ecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            577889999999999999887665432       222  34545555667878888889999999999887653322110


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEE
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS  405 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~  405 (531)
                      ..                                                   ...     ...++    +..++.++++
T Consensus        79 ~~---------------------------------------------------~~~-----~~sp~----~~~~~~v~~g   98 (369)
T 2hz6_A           79 IP---------------------------------------------------ELV-----QASPC----RSSDGILYMG   98 (369)
T ss_dssp             HH---------------------------------------------------HHH-----TTCSC----C-----CCCC
T ss_pred             Cc---------------------------------------------------ccc-----ccCce----EecCCEEEEE
Confidence            00                                                   000     00111    1123467778


Q ss_pred             eCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCC--
Q 009614          406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG--  482 (531)
Q Consensus       406 s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg--  482 (531)
                      +.|+.|+.||..+++.+..+....   .+.++| ++..+++++.|+.|+.||..+++.+ .....  .....++.++.  
T Consensus        99 ~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~  172 (369)
T 2hz6_A           99 KKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDY  172 (369)
T ss_dssp             EEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTC
T ss_pred             eCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc--cccCccccCCccc
Confidence            889999999999999988776433   245677 7888999999999999999998764 21111  11222333332  


Q ss_pred             -CEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          483 -KGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       483 -~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                       ..+++++.+|.|+.||..+|+++.+.+
T Consensus       173 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          173 KMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             cceEEEECCCCEEEEEECCCCcEEEEec
Confidence             567788899999999999999887665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.87  E-value=1.9e-07  Score=103.29  Aligned_cols=199  Identities=14%  Similarity=0.062  Sum_probs=126.0

Q ss_pred             cceeeeCCCCeEEeeecCCe--------------EEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC
Q 009614          239 GSATLKPGDHELTLGQRMRR--------------VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE  304 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~--------------I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~  304 (531)
                      ..++|+|| +.|+.+..++.              |++|++.+......   .......|...+..+.|+|||++|+..+.
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~---lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ---PVFATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE---EEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE---EEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            56899999 98888776543              88999875442211   01011233446899999999999988775


Q ss_pred             CC-----cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          305 DG-----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       305 Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      ++     .|.+||+.++...                                                            
T Consensus       288 ~~~~~~~~l~~~d~~~~~~~------------------------------------------------------------  307 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGKIG------------------------------------------------------------  307 (741)
T ss_dssp             CTTCSCCEEEEEEEETTEEC------------------------------------------------------------
T ss_pred             ccCCCcceEEEEECCCCCCc------------------------------------------------------------
Confidence            54     7888887654210                                                            


Q ss_pred             ceeEeecCCCCeeEEEEcCCC-eEEEEeC----CCcEEEEECCCC--eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSA----DKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~~-~l~s~s~----Dg~V~lwdl~~~--~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                      ....+..+...+.... .|+| .|+..+.    .+.|.+||+.++  .....+. +...+..+.+.  ++.++++...|+
T Consensus       308 ~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg  384 (741)
T 1yr2_A          308 PVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDA  384 (741)
T ss_dssp             CCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETT
T ss_pred             ccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECC
Confidence            0011112222333332 3666 6666655    345999999874  4444444 44456677776  467888888899


Q ss_pred             eEEEEeCC-CCeEE-EecC-CCCceEEEEEccCCCEEEEEe----CCCcEEEEeCCCCeE
Q 009614          452 KVRIWEVR-RCQVV-DYTD-IREIVSAVCYCPDGKGGIVGT----MTGNCRFYDIKDNQL  504 (531)
Q Consensus       452 ~I~Iwd~~-~~~~~-~~~~-~~~~v~~v~~spdg~~l~sgs----~dg~I~iwd~~~~~l  504 (531)
                      ..+||.+. +++.. .+.. ....+..+.++|+++.|+...    ..++|++||+.+++.
T Consensus       385 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          385 KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            87777554 34333 3332 356788999999998666432    247899999998874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.86  E-value=5.8e-07  Score=91.98  Aligned_cols=203  Identities=14%  Similarity=0.044  Sum_probs=125.7

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (531)
                      .....|+|+++|+++++...++.|++||..++........ ..... +.+.+... .++.....             ...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~-~l~~~d~~-------------~~~  194 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQ-RVYSIGWE-------------GTH  194 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSS-EEEEEBSS-------------TTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCC-cEEEEecC-------------CCc
Confidence            4678999999999878777789999999987765433322 11122 33332221 11111111             111


Q ss_pred             eEEEeCCccccccCcceeEeec-CCCCeeEEEEcC-CCeEEEEeCCCcEEEEECCCCeEEEE----ee-cCCce--EEEE
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRV----FS-HNNYV--TSVA  435 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~sp-~~~l~s~s~Dg~V~lwdl~~~~~l~~----~~-h~~~V--~sv~  435 (531)
                      .++.++....... ..+..+.. +...+.+++++| ++.|+.+..++.|+.||..++.....    .. +...-  ..++
T Consensus       195 ~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          195 TVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             EEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred             eEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence            3444433211100 00111112 445678999999 56666677788999999987764332    11 11111  3899


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC---------------CceEEEEEccCCCEEEEEe-CCCcEEEEeC
Q 009614          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR---------------EIVSAVCYCPDGKGGIVGT-MTGNCRFYDI  499 (531)
Q Consensus       436 fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~---------------~~v~~v~~spdg~~l~sgs-~dg~I~iwd~  499 (531)
                      |+|.++.++++...++.|+.|+.... ...+.++.               .....++++|+|+++++-. .++.|+.|++
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            99944666777777899999998754 33333221               3578999999999777777 7899999998


Q ss_pred             CCCeEE
Q 009614          500 KDNQLY  505 (531)
Q Consensus       500 ~~~~l~  505 (531)
                      .++++.
T Consensus       353 ~~G~v~  358 (409)
T 3hrp_A          353 LDGYVS  358 (409)
T ss_dssp             TTTEEE
T ss_pred             CCCEEE
Confidence            888754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.85  E-value=3.2e-06  Score=85.31  Aligned_cols=234  Identities=9%  Similarity=-0.084  Sum_probs=139.8

Q ss_pred             eeCCCCeEEeeec--CC---eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe----------CCCc
Q 009614          243 LKPGDHELTLGQR--MR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGT  307 (531)
Q Consensus       243 fspdg~~lasgs~--dg---~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~  307 (531)
                      ..|+++++.+...  ..   .|.++|..+...       ...+.....+  .++++|||++|+.+.          .++.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeE-------EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence            3467766655442  22   889999875442       1234433344  899999999998886          3678


Q ss_pred             EEEEEcccCccccceecC-------CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc
Q 009614          308 VRVWKVIEHERLDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP  380 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (531)
                      |.+||..+.+.+..+...       ...+..+.+.++....++. ..             .....+.+++ ....+    
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~-n~-------------~~~~~v~viD-~t~~~----  159 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF-QF-------------AAGPAVGLVV-QGGSS----  159 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEE-ec-------------CCCCeEEEEE-CCCCE----
Confidence            999999988877766543       1223344444443322221 10             1123455555 44322    


Q ss_pred             eeE-eecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee------cCCc-eEEEEEeeCCCCEEEEEeCC
Q 009614          381 LHE-FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS------HNNY-VTSVAFNPVDDNYFISGSID  450 (531)
Q Consensus       381 ~~~-~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~------h~~~-V~sv~fsp~d~~~l~sgs~D  450 (531)
                      +.. +.. .+   ++.+.|.+  .+++.+.||.+.++|. +++.+....      ...+ .....+.+ ++..++..+..
T Consensus       160 ~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~  233 (373)
T 2mad_H          160 DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYS  233 (373)
T ss_pred             EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCC
Confidence            222 221 11   24445555  6677888999999999 877663321      1122 13356677 44444444478


Q ss_pred             CeEEEEeCCCCe--EEE-ecC----------CCCceEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEE
Q 009614          451 GKVRIWEVRRCQ--VVD-YTD----------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       451 g~I~Iwd~~~~~--~~~-~~~----------~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~~~~l~~~  507 (531)
                      +.|.+.|+.+..  ++. +.-          .......++++||++.++++..          .+.|.++|+.+++.+.+
T Consensus       234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~  313 (373)
T 2mad_H          234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ  313 (373)
T ss_pred             ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence            899999997653  222 110          1122445789999998887653          35799999999999887


Q ss_pred             eee
Q 009614          508 NQI  510 (531)
Q Consensus       508 ~~~  510 (531)
                      +.+
T Consensus       314 i~~  316 (373)
T 2mad_H          314 ISL  316 (373)
T ss_pred             EEC
Confidence            754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.83  E-value=2.5e-07  Score=92.97  Aligned_cols=238  Identities=9%  Similarity=-0.060  Sum_probs=137.9

Q ss_pred             eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcccCccccceecC--
Q 009614          258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQ--  325 (531)
Q Consensus       258 ~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~--  325 (531)
                      +|.+.|..+.+.       ...+.....+  .+.++|||++|+++.          .++.|.+||+.+++.+..+...  
T Consensus        47 ~vsvID~~t~~v-------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVT-------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEE-------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeE-------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            888999875443       2234333345  799999999998886          3789999999999998888754  


Q ss_pred             -----CCCCeeEEEeecCCcceeeeecccccccc---------c---------------cccccCCCceEEEeCCcc---
Q 009614          326 -----DTDPSCLYFTINHLSQLIPIDVDKEKIDK---------T---------------KSLRKSSDLTCVVLPPKV---  373 (531)
Q Consensus       326 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---------------~~~~~~~~~~~~~~~~~~---  373 (531)
                           ...+..+.++++....+++..........         .               ..+..+.++.+...+...   
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence                 13455666665554333221110000000         0               001112222222222221   


Q ss_pred             --ccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCe--EEEEeec-----------CCceEEEEEe
Q 009614          374 --FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH-----------NNYVTSVAFN  437 (531)
Q Consensus       374 --~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~--~l~~~~h-----------~~~V~sv~fs  437 (531)
                        ..........+.-...+.   . .+++ .++..+. +.|.+.|+.+..  .+..+..           ......++++
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence              000000000000111222   2 4444 5555555 899999986532  3332211           1112227899


Q ss_pred             eCCCCEEEEEeC---------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCE-EEEEe-CCCcEEEEeCCCCeEEE
Q 009614          438 PVDDNYFISGSI---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG-GIVGT-MTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       438 p~d~~~l~sgs~---------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~-l~sgs-~dg~I~iwd~~~~~l~~  506 (531)
                      | +++.++.+..         ++.+.++|+.+.+++...........++|+|||++ +++.. .++.|.++|+.+++.+.
T Consensus       273 ~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          273 K-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             T-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             C-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence            9 7777765432         23567999999998865545557899999999985 55555 48999999999999998


Q ss_pred             Eeee
Q 009614          507 QNQI  510 (531)
Q Consensus       507 ~~~~  510 (531)
                      +++.
T Consensus       352 ~I~v  355 (368)
T 1mda_H          352 SVEL  355 (368)
T ss_dssp             ECCC
T ss_pred             EEEC
Confidence            7764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.80  E-value=5.8e-07  Score=87.57  Aligned_cols=100  Identities=10%  Similarity=0.136  Sum_probs=75.7

Q ss_pred             CeeEEEEcCCC-eE-EEEeCCCcEEEEEC--CCCeEE--EEe---e-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          390 EVLDLSWSKNG-FL-LSSSADKTVRLWQV--GIDRCL--RVF---S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       390 ~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl--~~~~~l--~~~---~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      ..+.++|+|++ .| ++.+.++.|.+|++  .++...  +.+   . +...+..+++++ ++++.++....+.|.+||..
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTT
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCC
Confidence            45789999998 44 56667889999997  455432  222   1 346788999999 88888888888899999999


Q ss_pred             CCeEEE-ecCCCCceEEEEEc-cCCCEEEEEeC
Q 009614          460 RCQVVD-YTDIREIVSAVCYC-PDGKGGIVGTM  490 (531)
Q Consensus       460 ~~~~~~-~~~~~~~v~~v~~s-pdg~~l~sgs~  490 (531)
                      +++++. +..+...+++++|. ||++.|++++.
T Consensus       229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            888775 44445689999998 89887766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.75  E-value=1.3e-06  Score=87.88  Aligned_cols=239  Identities=10%  Similarity=0.002  Sum_probs=147.7

Q ss_pred             eeeeCCCCeEEeeec-----CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe----------CC
Q 009614          241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED  305 (531)
Q Consensus       241 ~~fspdg~~lasgs~-----dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~D  305 (531)
                      ....|+++.+.+...     ++.|.+.|..+...       ...+.....+ . ++++|||++|+.+.          .+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            466799998877654     68999999875442       2334433444 3 99999999887775          36


Q ss_pred             CcEEEEEcccCccccceecCC-------CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          306 GTVRVWKVIEHERLDGFDVQD-------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      +.|.+||..+++.+..+....       ..+..+.+.++.....+. .             ...+..+.+++......  
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVa-n-------------~~~~~~VsVID~~t~~v--  172 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY-Q-------------FSPAPAVGVVDLEGKAF--  172 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEE-E-------------CSSSCEEEEEETTTTEE--
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEE-E-------------cCCCCeEEEEECCCCcE--
Confidence            789999999999888776543       134445555544322211 1             11234566666655433  


Q ss_pred             cceeEeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeEEEEee-c----CCceE-EEEEeeCCCCEEEEEeC
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-H----NNYVT-SVAFNPVDDNYFISGSI  449 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~l~~~~-h----~~~V~-sv~fsp~d~~~l~sgs~  449 (531)
                        +.++....    +..+.|.+  .+++.+.||.+.+.++.+ ++...... +    ..++. ...|.+.++++++ .+.
T Consensus       173 --v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~  245 (386)
T 3sjl_D          173 --KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTY  245 (386)
T ss_dssp             --EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred             --EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeC
Confidence              23332111    11223544  677888899999999976 55432211 1    12221 2466532665544 566


Q ss_pred             CCeEEEEeCCCCeE--EE-ec--C--------CCCceEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEE
Q 009614          450 DGKVRIWEVRRCQV--VD-YT--D--------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~--~~-~~--~--------~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~~~~l~~  506 (531)
                      +|.|++.|+.+...  +. +.  .        .......++++|+++.+++...          .+.|.++|+.+++.+.
T Consensus       246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~  325 (386)
T 3sjl_D          246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA  325 (386)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence            89999999987642  21 21  0        1123345778999998888653          2469999999999998


Q ss_pred             Eeeee
Q 009614          507 QNQIC  511 (531)
Q Consensus       507 ~~~~~  511 (531)
                      ++.+.
T Consensus       326 ~i~vg  330 (386)
T 3sjl_D          326 KFEMG  330 (386)
T ss_dssp             EEEEE
T ss_pred             EEECC
Confidence            87754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.74  E-value=2.4e-06  Score=84.38  Aligned_cols=184  Identities=8%  Similarity=0.047  Sum_probs=115.3

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-c-cCCCEEEEEEccCCCEEEEEeCC----CcEEE
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-A-HEGSILTMKFSLDGQYLASGGED----GTVRV  310 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~-H~~~I~~l~fspdg~~Lasgs~D----g~I~i  310 (531)
                      .+.+++++|+|.++++. . ..|.+|+..++....  +.   ... + ....+++++++|+|+++++...+    +...|
T Consensus        91 ~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~--~~---~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL--HA---ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             CEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE--EE---CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             cceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE--Ee---eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence            45567899999877764 3 448999976544211  00   000 1 12358899999999976654322    22344


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |.+.+++.                                                               ..+..+...
T Consensus       164 ~~~~~g~~---------------------------------------------------------------~~~~~~~~~  180 (326)
T 2ghs_A          164 YHVAKGKV---------------------------------------------------------------TKLFADISI  180 (326)
T ss_dssp             EEEETTEE---------------------------------------------------------------EEEEEEESS
T ss_pred             EEEeCCcE---------------------------------------------------------------EEeeCCCcc
Confidence            43322110                                                               000011223


Q ss_pred             eeEEEEcCCC-eE-EEEeCCCcEEEEECC--CC-e-----EEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          391 VLDLSWSKNG-FL-LSSSADKTVRLWQVG--ID-R-----CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       391 I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~--~~-~-----~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      ...++|+|++ .| ++.+.++.|.+||+.  ++ .     .+..+. ....+..+++++ +++++++...++.|.+||..
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC
Confidence            5689999998 55 444567899999986  55 3     122222 345678899998 88888877777899999994


Q ss_pred             CCeEE-EecCCCCceEEEEEc-cCCCEEEEEeCCC
Q 009614          460 RCQVV-DYTDIREIVSAVCYC-PDGKGGIVGTMTG  492 (531)
Q Consensus       460 ~~~~~-~~~~~~~~v~~v~~s-pdg~~l~sgs~dg  492 (531)
                       ++.+ .+..+...+++++|. |++..|++++..+
T Consensus       260 -g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          260 -GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence             5544 444455679999998 8988776665443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.72  E-value=1.1e-06  Score=85.90  Aligned_cols=157  Identities=8%  Similarity=0.020  Sum_probs=109.4

Q ss_pred             EcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccccccccc
Q 009614          280 FLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL  358 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (531)
                      +..+........|+|+|+ ++++...++.|..|+. +++.                                        
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~----------------------------------------   78 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV----------------------------------------   78 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE----------------------------------------
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE----------------------------------------
Confidence            444455678899999998 5677777889999986 3321                                        


Q ss_pred             ccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEe-CCCcEEEEECCCCeEEEEee-----cCCceE
Q 009614          359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVRLWQVGIDRCLRVFS-----HNNYVT  432 (531)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s-~Dg~V~lwdl~~~~~l~~~~-----h~~~V~  432 (531)
                                             ..+..+...+..++++++|.|+.+. .++.|.+|+.. ++......     ....+.
T Consensus        79 -----------------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           79 -----------------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             -----------------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred             -----------------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence                                   1112234567889999999544444 55789999986 55433222     123467


Q ss_pred             EEEEeeCCCCEEEE----EeC-------------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC----
Q 009614          433 SVAFNPVDDNYFIS----GSI-------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT----  491 (531)
Q Consensus       433 sv~fsp~d~~~l~s----gs~-------------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d----  491 (531)
                      .++++| +++++++    |..             .+.|..||..++++..+. .......++|+||++.|+++...    
T Consensus       135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~  212 (305)
T 3dr2_A          135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGH  212 (305)
T ss_dssp             CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred             CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence            899999 8998886    332             256888888777655444 44567889999999988877665    


Q ss_pred             --CcEEEEeCCCCe
Q 009614          492 --GNCRFYDIKDNQ  503 (531)
Q Consensus       492 --g~I~iwd~~~~~  503 (531)
                        +.|++|++..+.
T Consensus       213 ~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          213 GSVEITAFAWRDGA  226 (305)
T ss_dssp             CCCEEEEEEEETTE
T ss_pred             CCCEEEEEEecCCC
Confidence              689999998665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.70  E-value=1.5e-06  Score=95.18  Aligned_cols=199  Identities=12%  Similarity=0.139  Sum_probs=126.9

Q ss_pred             ccceeeeCCCCeEEeeecCC-------------eEEEEeCCCCcccccccccceEEcc-cCCCEEEEEEccCCCEEEEEe
Q 009614          238 HGSATLKPGDHELTLGQRMR-------------RVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGG  303 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg-------------~I~vwd~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs  303 (531)
                      ...++|+ ||+.|+.++.+.             .|++|++.+...+...+   ..... |...+..+.|+|||++|+...
T Consensus       177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v---~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLV---FGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEE---ESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEE---EecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            3568999 999998887764             49999987654321111   11123 455678999999999885543


Q ss_pred             C----CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCc
Q 009614          304 E----DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK  379 (531)
Q Consensus       304 ~----Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (531)
                      .    +..|.+||+.++..                                                             
T Consensus       253 ~~~~~~~~i~~~d~~~~~~-------------------------------------------------------------  271 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQENA-------------------------------------------------------------  271 (693)
T ss_dssp             ESSSSCCEEEEEETTSTTC-------------------------------------------------------------
T ss_pred             ccCCCCcEEEEEECCCCCC-------------------------------------------------------------
Confidence            2    24788888765421                                                             


Q ss_pred             ceeEeecCCCCeeEEEEcCCC--eEEEEeCC---CcEEEEECCCCeE---EEEeecCCceEEEEEeeCCCCEEEEEeC-C
Q 009614          380 PLHEFQGHSSEVLDLSWSKNG--FLLSSSAD---KTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPVDDNYFISGSI-D  450 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~~--~l~s~s~D---g~V~lwdl~~~~~---l~~~~h~~~V~sv~fsp~d~~~l~sgs~-D  450 (531)
                      ....+..+....... |++++  +++.+..+   +.|..+|+.++..   .....|...+.  .|+| ++++|+.... +
T Consensus       272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~  347 (693)
T 3iuj_A          272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEYMVD  347 (693)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEEEET
T ss_pred             ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEEEEC
Confidence            011122233333333 44554  34444333   6799999987654   33344655555  8899 7777766654 4


Q ss_pred             C--eEEEEeCCCCeEEEec-CCCCceEEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEE
Q 009614          451 G--KVRIWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKDNQLY  505 (531)
Q Consensus       451 g--~I~Iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~d----g~I~iwd~~~~~l~  505 (531)
                      +  .|++|++..+....+. .....+..+.++|++..|+....+    +.++.||+.+++..
T Consensus       348 g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          348 ATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             TEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             CeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            4  6899999876554433 334567788888998877766555    78999999887643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.67  E-value=5e-06  Score=84.42  Aligned_cols=201  Identities=15%  Similarity=0.206  Sum_probs=128.4

Q ss_pred             CCCCeEE-eeecCCeEEEEeCCCCcccccccccceEEc------c-cCCCEEEEEEccCCCEEEEEeCC------CcEEE
Q 009614          245 PGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFL------A-HEGSILTMKFSLDGQYLASGGED------GTVRV  310 (531)
Q Consensus       245 pdg~~la-sgs~dg~I~vwd~~~~~~~~~~~~~~~~l~------~-H~~~I~~l~fspdg~~Lasgs~D------g~I~i  310 (531)
                      +++++|+ .|-.+++|.|.|+.......   ...+++.      . ....-..+...|+| +++++..+      |.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p---~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREP---KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSC---EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCc---eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence            6777765 47788999999997443221   1222231      1 11234567888999 77776555      67888


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      .|..+.+.+..+.....                                                           ...-
T Consensus       169 lD~~T~~v~~~~~~~~~-----------------------------------------------------------~~~~  189 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRG-----------------------------------------------------------DQYL  189 (462)
T ss_dssp             ECTTTCCEEEECCSBCT-----------------------------------------------------------TCCC
T ss_pred             EECCCCeEEEEEccCCC-----------------------------------------------------------Cccc
Confidence            88877765544321110                                                           0111


Q ss_pred             eeEEEEcCCC-eEEEEe-------------------CCCcEEEEECCCCeEEEEeecC---CceEEEEE--eeCCCCEEE
Q 009614          391 VLDLSWSKNG-FLLSSS-------------------ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAF--NPVDDNYFI  445 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s-------------------~Dg~V~lwdl~~~~~l~~~~h~---~~V~sv~f--sp~d~~~l~  445 (531)
                      -.++-|+|++ .++++.                   ...+|.+||+.+++.+.++.-.   .....|.|  +| ++++++
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aY  268 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGF  268 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEE
Confidence            2356677877 666653                   3789999999999888888643   23455656  99 888777


Q ss_pred             EEe------CCCeEEEEeCCCCe-----EEEecCC----------------CCceEEEEEccCCCEEEEEeC-CCcEEEE
Q 009614          446 SGS------IDGKVRIWEVRRCQ-----VVDYTDI----------------REIVSAVCYCPDGKGGIVGTM-TGNCRFY  497 (531)
Q Consensus       446 sgs------~Dg~I~Iwd~~~~~-----~~~~~~~----------------~~~v~~v~~spdg~~l~sgs~-dg~I~iw  497 (531)
                      +++      .+++|.+|....++     ++.+...                ...+..|.++|||++|.++.. .+.|.+|
T Consensus       269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf  348 (462)
T 2ece_A          269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY  348 (462)
T ss_dssp             EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            766      56788887665543     2211110                245788999999999988776 6789999


Q ss_pred             eCCC---CeEEEEee
Q 009614          498 DIKD---NQLYQQNQ  509 (531)
Q Consensus       498 d~~~---~~l~~~~~  509 (531)
                      |+..   .+++.++.
T Consensus       349 dV~d~~~~~lv~~I~  363 (462)
T 2ece_A          349 DISNPFKPVLTGKVK  363 (462)
T ss_dssp             ECSSTTSCEEEEEEE
T ss_pred             EecCCCCcEEEEEEE
Confidence            9863   34444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=4e-07  Score=91.48  Aligned_cols=228  Identities=7%  Similarity=-0.065  Sum_probs=131.4

Q ss_pred             ceeeeCCCCeEEeee----------cCCeEEEEeCCCCcccccccccceEEccc-------CCCEEEEEEccCCCEEEEE
Q 009614          240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG  302 (531)
Q Consensus       240 s~~fspdg~~lasgs----------~dg~I~vwd~~~~~~~~~~~~~~~~l~~H-------~~~I~~l~fspdg~~Lasg  302 (531)
                      .+.++||++++.++.          .++.|.+||..+....       .++..+       ......+.|+|||++|+++
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa  141 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-------EEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence            479999999998875          4789999999865432       233221       1235578999999999988


Q ss_pred             eC--CCcEEE--EEcccCccccceecCCCC-C----eeEEEeecCCcceeeeeccc-----cccccc--ccc-------c
Q 009614          303 GE--DGTVRV--WKVIEHERLDGFDVQDTD-P----SCLYFTINHLSQLIPIDVDK-----EKIDKT--KSL-------R  359 (531)
Q Consensus       303 s~--Dg~I~i--Wd~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~-------~  359 (531)
                      ..  +..|.+  +|+.+   +..+...... .    ...++.....+.+..+....     .+....  ..+       .
T Consensus       142 n~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~  218 (368)
T 1mda_H          142 LFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ  218 (368)
T ss_dssp             ECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE
T ss_pred             ccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc
Confidence            74  467888  99877   3334322110 0    00111111222223333322     111000  000       0


Q ss_pred             cCCC--------ceEEEeCCccccccCcceeEeec----------CCCCeeEEEEcCCC-eEEEEeC---------CCcE
Q 009614          360 KSSD--------LTCVVLPPKVFRLLEKPLHEFQG----------HSSEVLDLSWSKNG-FLLSSSA---------DKTV  411 (531)
Q Consensus       360 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----------h~~~I~~l~~sp~~-~l~s~s~---------Dg~V  411 (531)
                      ...+        +.+.+.+.....  .+.+..+.-          +......++++|++ +++.+..         +..+
T Consensus       219 ~~~~~~~~~vs~~~V~viD~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          219 ANYPGMLVWAVASSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             ETTTTEEEECBSSCCEEEECCSSC--CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccCCEEEEEcCCEEEEEECCCCc--ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence            0001        222222221100  000010100          01112236899998 5554432         2356


Q ss_pred             EEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEe-CCCeEEEEeCCCCeEEEecCCCCceEEEEEcc
Q 009614          412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (531)
Q Consensus       412 ~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs-~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~sp  480 (531)
                      .++|+.+.+.+..+.-......|+|+| +++ ++++.. .++.|.++|+.+++++...........+++.+
T Consensus       297 ~ViD~~t~~vv~~i~vg~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          297 SSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EEEECCCCeEEEEEECCCCcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence            699999999999887556789999999 776 667777 59999999999999998776666667777664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.61  E-value=2.6e-06  Score=87.03  Aligned_cols=235  Identities=8%  Similarity=-0.026  Sum_probs=141.3

Q ss_pred             CCCCeEEeeec-C----CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe----------CCCcEE
Q 009614          245 PGDHELTLGQR-M----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVR  309 (531)
Q Consensus       245 pdg~~lasgs~-d----g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~  309 (531)
                      |++..+.+... +    +.|.+.|..+.+..       ..+..-..+  .+.++|||++|+.+.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            45555544433 2    79999998854432       234333345  899999999888876          467899


Q ss_pred             EEEcccCccccceecC-------CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          310 VWKVIEHERLDGFDVQ-------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      ++|..+++.+..+...       ...+..+.+.++.....+. .             ......+.+++....++    +.
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~-n-------------~~~~~~VsVID~~t~kv----v~  214 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFY-Q-------------FSPAPAVGVVDLEGKTF----DR  214 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEE-E-------------CSSSCEEEEEETTTTEE----EE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEE-e-------------cCCCCeEEEEECCCCeE----EE
Confidence            9999999888777653       1223344444443222211 0             01234455666555433    22


Q ss_pred             EeecCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEE----ee-cCCce-EEEEEeeCCCCEEEEEeCCCeEE
Q 009614          383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV----FS-HNNYV-TSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~----~~-h~~~V-~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      .+.-.  .  +....|.+  .+++.+.||.+.+.++.+++....    +. ...++ ..+.|.| ++..++..+..+.|.
T Consensus       215 ~I~v~--g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~  289 (426)
T 3c75_H          215 MLDVP--D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIF  289 (426)
T ss_dssp             EEECC--S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEE
T ss_pred             EEEcC--C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEE
Confidence            22211  1  12334443  666777888888888866655432    21 11111 2356788 777766667889999


Q ss_pred             EEeCCCCeEEE---ecC----------CCCceEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeee
Q 009614          455 IWEVRRCQVVD---YTD----------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       455 Iwd~~~~~~~~---~~~----------~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +.|+.......   +.-          .......++++|+++.+++...          .+.|.++|+.+++.+.++.+.
T Consensus       290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg  369 (426)
T 3c75_H          290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG  369 (426)
T ss_dssp             EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC
Confidence            99997665331   110          0111223789999988777643          357999999999999888754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.53  E-value=0.00014  Score=69.27  Aligned_cols=235  Identities=8%  Similarity=-0.037  Sum_probs=128.5

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcccCccccceecCC
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERLDGFDVQD  326 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~~~~~~~~~~~~  326 (531)
                      ++|+.+.. +.|+.+++.......  ......+......+.+++|++++..|+.+ ..++.|..+++........+....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~--~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKK--TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCG--GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             cEEEEEcC-CeEEEEEecCccccc--ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            44555543 578888877543211  00001122223457899999976655544 457899999986554322221111


Q ss_pred             CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEEEEcCC-CeEEE
Q 009614          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFLLS  404 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~sp~-~~l~s  404 (531)
                      ..+..+.+.+.. ..++..+.              ....+.+++...     .....+ .........++++|+ +.|+.
T Consensus        79 ~~p~~ia~d~~~-~~lyv~d~--------------~~~~I~~~~~~g-----~~~~~~~~~~~~~P~~i~vd~~~g~lyv  138 (267)
T 1npe_A           79 GSPEGIALDHLG-RTIFWTDS--------------QLDRIEVAKMDG-----TQRRVLFDTGLVNPRGIVTDPVRGNLYW  138 (267)
T ss_dssp             CCEEEEEEETTT-TEEEEEET--------------TTTEEEEEETTS-----CSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             CCccEEEEEecC-CeEEEEEC--------------CCCEEEEEEcCC-----CCEEEEEECCCCCccEEEEeeCCCEEEE
Confidence            233333333221 12222221              122333332221     111111 112245689999995 55554


Q ss_pred             EeC---CCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEE
Q 009614          405 SSA---DKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY  478 (531)
Q Consensus       405 ~s~---Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~  478 (531)
                      +..   .+.|..+++.... ...+.  .-.....++++| ++. ++++....+.|.++|+.......+.........++.
T Consensus       139 ~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~  216 (267)
T 1npe_A          139 TDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS  216 (267)
T ss_dssp             EECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE
T ss_pred             EECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE
Confidence            443   3688888886433 23332  234678999999 655 445555678999999987554433333334566665


Q ss_pred             ccCCCEEEEEe-CCCcEEEEeCCCCeEEEEee
Q 009614          479 CPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       479 spdg~~l~sgs-~dg~I~iwd~~~~~l~~~~~  509 (531)
                        ++..|+++. ..+.|..+|..+++.+..+.
T Consensus       217 --d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          217 --YGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             --ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             --eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence              345555554 56889999999999887665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.53  E-value=1.5e-06  Score=86.50  Aligned_cols=226  Identities=8%  Similarity=0.025  Sum_probs=131.6

Q ss_pred             ccccceeeeCCCCeEEeeec-----CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCE-EEEEe---CCC
Q 009614          236 DRHGSATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY-LASGG---EDG  306 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~-----dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~-Lasgs---~Dg  306 (531)
                      ..+..++++++|++.++-..     .+.|.+||..+..... .+........+...+..|++++++.. +++..   .++
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~-~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~  145 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSR-VIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA  145 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEE-EEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEE-EEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence            45567899999987776544     5789999987554211 00000001123345789999986544 45554   678


Q ss_pred             cEEEEEcccCccccceecCCCC-CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          307 TVRVWKVIEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      .|.+||+.+++....+..+... .....+...           ..     .......++.+..                 
T Consensus       146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~-----------g~-----~~~~~~~~g~~~~-----------------  192 (343)
T 2qe8_A          146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVID-----------GV-----PVQIGQPDGTVIR-----------------  192 (343)
T ss_dssp             EEEEEETTTCCEEEECTTCTTTSCCSCCCEET-----------TE-----ECBEECTTSCEEC-----------------
T ss_pred             eEEEEECCCCCEEEEecCCCcccccccceeEC-----------CE-----EEEeccCCCceec-----------------
Confidence            9999999877654333211000 000000000           00     0000011111100                 


Q ss_pred             cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC-----Ce--------EEEEeecCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-----DR--------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~-----~~--------~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                       -...+..|+|+|++ .|+.+..++. ++|.+..     +.        .+..+.+......+++++ +++++++...++
T Consensus       193 -~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~  269 (343)
T 2qe8_A          193 -PHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHS  269 (343)
T ss_dssp             -CCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGT
T ss_pred             -eecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCC
Confidence             11246789999999 7777776663 4444321     10        012223444567799999 899999999999


Q ss_pred             eEEEEeCCCCeEEEecC--CCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          452 KVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~~~~--~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .|.+||..+++......  .-..++.++|.++|.++++.+..+.+.+|.
T Consensus       270 ~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          270 AIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             eEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            99999996666543322  245689999999999888887666554443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.52  E-value=8.3e-06  Score=77.66  Aligned_cols=180  Identities=9%  Similarity=0.010  Sum_probs=120.6

Q ss_pred             CEEEEEEccCCCEEEEEeC--CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614          286 SILTMKFSLDGQYLASGGE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      ....|.|++++.++++.+.  ++.|++.|+.+++.+..+....                                     
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------------   64 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------------   64 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------------
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------------
Confidence            3689999998765555553  6799999999988655443211                                     


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecC-CceEEEEEeeCCCC
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDN  442 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~-~~V~sv~fsp~d~~  442 (531)
                                             + .....+++..+...++.-.++.+.++|..+.+.+..+... ..  ...+++ ++.
T Consensus        65 -----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~  117 (266)
T 2iwa_A           65 -----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK  117 (266)
T ss_dssp             -----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred             -----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence                                   0 0112344443224445557899999999999999998754 32  234566 666


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEecCC------CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee-ecc-
Q 009614          443 YFISGSIDGKVRIWEVRRCQVVDYTDI------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQG-  514 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~~~~~~------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~-~~~-  514 (531)
                      .++++..++.|.++|..+.+++.....      -..++.+.|. +|...+....++.|.+.|+.+++.+..+.+. +.. 
T Consensus       118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~  196 (266)
T 2iwa_A          118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK  196 (266)
T ss_dssp             SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence            666666789999999999887743221      1236788888 7755555556889999999999999888764 111 


Q ss_pred             ---cccCCCceeeeEEEee
Q 009614          515 ---KKKLPGKRITGFQVVK  530 (531)
Q Consensus       515 ---~kk~~~~~It~l~f~p  530 (531)
                         ..........||+|.|
T Consensus       197 ~~~~~~~~~~v~nGIa~~~  215 (266)
T 2iwa_A          197 LIDEGFRDIDVLNGIAWDQ  215 (266)
T ss_dssp             HHHTTCTTCCCEEEEEEET
T ss_pred             cccccccccCceEEEEEcC
Confidence               1123335668888875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.47  E-value=1.4e-05  Score=87.22  Aligned_cols=110  Identities=11%  Similarity=0.100  Sum_probs=85.0

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecC--C----------ce------------------------EEEEEeeCCCCEE
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--N----------YV------------------------TSVAFNPVDDNYF  444 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~--~----------~V------------------------~sv~fsp~d~~~l  444 (531)
                      .++.++.+|.|.++|..+++.+..+...  .          ++                        ..++|+| +..++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~  407 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLV  407 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEE
Confidence            6888999999999999999998766411  0          01                        1568899 77777


Q ss_pred             EEEeC-------------------------------------------CCeEEEEeCCCCeEEEecCCCCceEEEEEccC
Q 009614          445 ISGSI-------------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD  481 (531)
Q Consensus       445 ~sgs~-------------------------------------------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spd  481 (531)
                      ++...                                           .|.|..||+.+++++-...+...+....+..+
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            76543                                           27899999999998754444444555567778


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       482 g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +.++++++.||.+++||+.+++++.++.+.
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            889999999999999999999999888754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.45  E-value=1.7e-05  Score=74.79  Aligned_cols=178  Identities=13%  Similarity=0.108  Sum_probs=120.2

Q ss_pred             EEEEEEccCCCEEEEEeCCC--cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614          287 ILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (531)
Q Consensus       287 I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (531)
                      ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.....                                     
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------------------------------------   86 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-------------------------------------   86 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence            5789998 677777778776  899999999986655432110                                     


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEE
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF  444 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l  444 (531)
                                              ..-..++...+...+..-.++.+.+||..+.+.+.++.....-..++  + ++..|
T Consensus        87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L  139 (262)
T 3nol_A           87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYL  139 (262)
T ss_dssp             ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCE
T ss_pred             ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEE
Confidence                                    00112233222233444568899999999999999998654334444  4 56666


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEecCC---C---CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee-eccc--
Q 009614          445 ISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK--  515 (531)
Q Consensus       445 ~sgs~Dg~I~Iwd~~~~~~~~~~~~---~---~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~-~~~~--  515 (531)
                      +.+..+++|.++|..+.+++.....   .   ..++.+.|. +|+..+..-.++.|.+.|..+++.+..+... +...  
T Consensus       140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~  218 (262)
T 3nol_A          140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG  218 (262)
T ss_dssp             EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred             EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence            6655678999999999887743221   1   334567776 7765555556889999999999999988764 2211  


Q ss_pred             -ccCCCceeeeEEEee
Q 009614          516 -KKLPGKRITGFQVVK  530 (531)
Q Consensus       516 -kk~~~~~It~l~f~p  530 (531)
                       .........||+|.|
T Consensus       219 ~~~~~~~vlNGIA~dp  234 (262)
T 3nol_A          219 PLPSPIDVLNGIAWDK  234 (262)
T ss_dssp             SCCSSCCCEEEEEEET
T ss_pred             cccCcCCceEEEEEcC
Confidence             123456789999986

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.41  E-value=1.8e-05  Score=86.46  Aligned_cols=110  Identities=13%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCC--c--------------------------------------eEEEEEeeCC
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN--Y--------------------------------------VTSVAFNPVD  440 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~--~--------------------------------------V~sv~fsp~d  440 (531)
                      .++.++.+|.++++|..+++.+.......  .                                      -..++|+| +
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~  399 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D  399 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence            67888899999999999999875432110  0                                      11278888 6


Q ss_pred             CCEEEEEeC---------------------------------------------CCeEEEEeCCCCeEEEecCCCCceEE
Q 009614          441 DNYFISGSI---------------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSA  475 (531)
Q Consensus       441 ~~~l~sgs~---------------------------------------------Dg~I~Iwd~~~~~~~~~~~~~~~v~~  475 (531)
                      ..++++...                                             +|.|+.||+.+++++-...+...+..
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~  479 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG  479 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence            667666532                                             37899999999998743333333444


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       476 v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ..+...+.++++|+.||.++.||.++|+++.+++..
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            456667889999999999999999999999887753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.40  E-value=2.8e-05  Score=73.38  Aligned_cols=178  Identities=11%  Similarity=0.014  Sum_probs=122.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCce
Q 009614          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (531)
                      -...|.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ....                                      
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~--------------------------------------   95 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN--------------------------------------   95 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT--------------------------------------
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC--------------------------------------
Confidence            35788887 4667788888999999999998865443 1110                                      


Q ss_pred             EEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                                             ..-..++...+.+.+..-.++.+.+||..+.+.+.++.....-+.++  + ++..|+
T Consensus        96 -----------------------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~  149 (268)
T 3nok_A           96 -----------------------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLV  149 (268)
T ss_dssp             -----------------------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEE
T ss_pred             -----------------------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEE
Confidence                                   00112333333344445578999999999999999998655445555  4 567777


Q ss_pred             EEeCCCeEEEEeCCCCeEEEecC---CC---CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee-eccc---
Q 009614          446 SGSIDGKVRIWEVRRCQVVDYTD---IR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK---  515 (531)
Q Consensus       446 sgs~Dg~I~Iwd~~~~~~~~~~~---~~---~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~-~~~~---  515 (531)
                      .+..+++|.++|..+.+++....   ..   ..++.+.|. +|+..+..-.++.|.+.|..+++.+..+... +...   
T Consensus       150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~  228 (268)
T 3nok_A          150 RSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG  228 (268)
T ss_dssp             EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred             EECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence            77778999999999988774222   11   245667777 7765555546889999999999999988865 2111   


Q ss_pred             -ccCCCceeeeEEEee
Q 009614          516 -KKLPGKRITGFQVVK  530 (531)
Q Consensus       516 -kk~~~~~It~l~f~p  530 (531)
                       .........||+|.|
T Consensus       229 ~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          229 QVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             TCCCTTCCEEEEEECT
T ss_pred             cccCcCCceEEEEEcC
Confidence             123446789999876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.37  E-value=0.0001  Score=68.74  Aligned_cols=180  Identities=11%  Similarity=0.040  Sum_probs=120.8

Q ss_pred             CCEEEEEEccCCCEEEEEeCCC--cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCC
Q 009614          285 GSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS  362 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (531)
                      .-...+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+......                                  
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----------------------------------   65 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----------------------------------   65 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------------
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------------
Confidence            3477999986 66667777754  8999999999866554322110                                  


Q ss_pred             CceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC
Q 009614          363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN  442 (531)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~  442 (531)
                                                 .-..++...+......-.++.+.+||..+.+.+.++.....-..++  + ++.
T Consensus        66 ---------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~  115 (243)
T 3mbr_X           66 ---------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDS  115 (243)
T ss_dssp             ---------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSS
T ss_pred             ---------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCC
Confidence                                       0012233222244445578999999999999999998655445555  4 556


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEecCC---C---CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee-eccc
Q 009614          443 YFISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK  515 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~~~~~~---~---~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~-~~~~  515 (531)
                      .|+.+..+++|.++|..+.+++.....   .   ..++.+.|. +|+..+..-.+..|.+.|..+++.+..+.+. +...
T Consensus       116 ~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~  194 (243)
T 3mbr_X          116 HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD  194 (243)
T ss_dssp             CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred             EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence            565556688999999999887742221   1   345666765 6765555546889999999999999988765 2211


Q ss_pred             c----cCCCceeeeEEEee
Q 009614          516 K----KLPGKRITGFQVVK  530 (531)
Q Consensus       516 k----k~~~~~It~l~f~p  530 (531)
                      .    ........||++.|
T Consensus       195 ~~~~~~~~~~vlNGIA~d~  213 (243)
T 3mbr_X          195 ADALTDSTNDVLNGIAFDA  213 (243)
T ss_dssp             TTSCCCTTSSCEEEEEEET
T ss_pred             cccccCCcCCceEEEEEcC
Confidence            1    23446789999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.36  E-value=5.5e-08  Score=98.22  Aligned_cols=147  Identities=13%  Similarity=0.052  Sum_probs=81.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc
Q 009614          295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF  374 (531)
Q Consensus       295 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (531)
                      ++..+++++.||.|+.||..+|+.+..+..                                                  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------------------------------------------   37 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------------------------------------------   37 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence            577899999999999999998876543321                                                  


Q ss_pred             cccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC--CceE-EEEEeeCCCCEEEEEeCC
Q 009614          375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVT-SVAFNPVDDNYFISGSID  450 (531)
Q Consensus       375 ~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~--~~V~-sv~fsp~d~~~l~sgs~D  450 (531)
                                    +.+.+..+..++ .+++++.|+.|+.||..+++.+..+...  ..+. +..+.  .+..+++++.|
T Consensus        38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~d  101 (369)
T 2hz6_A           38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQ  101 (369)
T ss_dssp             --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred             --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCC
Confidence                          111111222445 6777789999999999998887666422  1111 00111  34577888889


Q ss_pred             CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      +.|+.||..+++.+.......   .+.++|++..|++++.++.|+.||..+|+++.+++.
T Consensus       102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A          102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence            999999999998773222222   245677888999999999999999999998766553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.36  E-value=6.9e-05  Score=76.11  Aligned_cols=116  Identities=8%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             eEEEEcCCCeEEEEeCC------CcEEEEECCCCeEEEEeecC----CceEEEEEeeCCCCEEEEEe-------------
Q 009614          392 LDLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHN----NYVTSVAFNPVDDNYFISGS-------------  448 (531)
Q Consensus       392 ~~l~~sp~~~l~s~s~D------g~V~lwdl~~~~~l~~~~h~----~~V~sv~fsp~d~~~l~sgs-------------  448 (531)
                      ..+...|+|.++++..+      +.|.++|..+.+.+..+...    ..-..+.|+| +++.+++..             
T Consensus       141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence            45566788855555444      78999999999999998622    2234688899 899888874             


Q ss_pred             ------CCCeEEEEeCCCCeEEEecCCC---CceEEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCeEEEEe
Q 009614          449 ------IDGKVRIWEVRRCQVVDYTDIR---EIVSAVCY--CPDGKGGIVGT------MTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       449 ------~Dg~I~Iwd~~~~~~~~~~~~~---~~v~~v~~--spdg~~l~sgs------~dg~I~iwd~~~~~l~~~~  508 (531)
                            .+.+|.+||+.+++++......   .....+.|  +|+|+++.+++      .+++|.+|....++.....
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence                  3689999999998877544332   34555656  99999988877      4668888877766654433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.36  E-value=0.00014  Score=71.38  Aligned_cols=209  Identities=8%  Similarity=-0.009  Sum_probs=123.0

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccc------------eEEcccCCCEEEEEEcc-CCCEEEEEeC
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSL-DGQYLASGGE  304 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~------------~~l~~H~~~I~~l~fsp-dg~~Lasgs~  304 (531)
                      ...++++++|.++.++..++.|..|+..............            .........+.+|++.+ +|+ |+.+..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence            4468899999988888889999999876432210000000            00001123578999998 665 555544


Q ss_pred             CCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      .+.|..+|..++.. ..+..                                                          ..
T Consensus       100 ~~~i~~~d~~~g~~-~~~~~----------------------------------------------------------~~  120 (322)
T 2fp8_A          100 YYHLSVVGSEGGHA-TQLAT----------------------------------------------------------SV  120 (322)
T ss_dssp             TTEEEEECTTCEEC-EEEES----------------------------------------------------------EE
T ss_pred             CCCEEEEeCCCCEE-EEecc----------------------------------------------------------cC
Confidence            44577777644321 11100                                                          00


Q ss_pred             e-cCCCCeeEEEEcC-CCeEEEEeC------------------CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEE
Q 009614          385 Q-GHSSEVLDLSWSK-NGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF  444 (531)
Q Consensus       385 ~-~h~~~I~~l~~sp-~~~l~s~s~------------------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l  444 (531)
                      . ........+++.+ +|.|+.+..                  ++.|..||..+++.............|+|+| ++++|
T Consensus       121 ~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~l  199 (322)
T 2fp8_A          121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFV  199 (322)
T ss_dssp             TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEE
T ss_pred             CCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEE
Confidence            0 0012356677888 773333321                  3678888887776543333234456799999 88755


Q ss_pred             EEE-eCCCeEEEEeCCCC---eEEEecCCCCceEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEee
Q 009614          445 ISG-SIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       445 ~sg-s~Dg~I~Iwd~~~~---~~~~~~~~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~~~~l~~~~~  509 (531)
                      +.+ ...+.|.+|++...   ....+..... ...+++.++|++.++...          .+.|..+|.. ++++..+.
T Consensus       200 yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~  276 (322)
T 2fp8_A          200 LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP  276 (322)
T ss_dssp             EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEE
Confidence            544 56789999998752   2221112223 788999999987666544          4678888875 66666554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.34  E-value=0.0002  Score=71.67  Aligned_cols=237  Identities=11%  Similarity=0.002  Sum_probs=134.2

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccccee
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD  323 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H--~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~  323 (531)
                      .+..+.+++.++.|..+|..+++..............+  ...+.+. ...++..++.++.++.|..+|..+++......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            45677777788999999987665432211000000000  1223222 22245678888899999999999998766554


Q ss_pred             cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC-----eeEEEEcC
Q 009614          324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE-----VLDLSWSK  398 (531)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----I~~l~~sp  398 (531)
                      ............                  ....+.++.++.++.++.....    .+..+......     ....... 
T Consensus       131 ~~~~~~~~p~~~------------------~~~v~v~~~~g~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~-  187 (376)
T 3q7m_A          131 VAGEALSRPVVS------------------DGLVLIHTSNGQLQALNEADGA----VKWTVNLDMPSLSLRGESAPTTA-  187 (376)
T ss_dssp             CSSCCCSCCEEE------------------TTEEEEECTTSEEEEEETTTCC----EEEEEECCC-----CCCCCCEEE-
T ss_pred             CCCceEcCCEEE------------------CCEEEEEcCCCeEEEEECCCCc----EEEEEeCCCCceeecCCCCcEEE-
Confidence            432211110000                  0011222334455555543321    11111111110     0112222 


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCce-----EE---EEEee-CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV-----TS---VAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V-----~s---v~fsp-~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~  469 (531)
                      ++.++.++.++.|..+|..+++.+..+....+.     ..   +...| ..+..++.++.++.|..+|..+++.+-....
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL  267 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence            457888888999999999999988777532210     00   11111 0346778888899999999999987743322


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                       .....+..  ++..|++++.+|.|..+|..+++.+.+.+
T Consensus       268 -~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          268 -GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             -CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             -CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence             23344433  46678888899999999999999876554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.31  E-value=9.1e-05  Score=74.21  Aligned_cols=233  Identities=7%  Similarity=0.042  Sum_probs=134.0

Q ss_pred             CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecC
Q 009614          246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ  325 (531)
Q Consensus       246 dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~  325 (531)
                      ++..+.+++.++.|..+|..+++....       .............  .+..++.++.++.|..+|..+++........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~-------~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQ-------TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEE-------EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE-------EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            456777888899999999886654322       1111111111112  2447888889999999999999876665443


Q ss_pred             CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC--C-----C---eeEEE
Q 009614          326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS--S-----E---VLDLS  395 (531)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~-----~---I~~l~  395 (531)
                      .....   ..  ...... ..       ....+.+..++.++.++......    +.......  +     .   +...-
T Consensus       173 ~~~~~---~~--~~~~~~-~~-------~~~v~~g~~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~p  235 (376)
T 3q7m_A          173 MPSLS---LR--GESAPT-TA-------FGAAVVGGDNGRVSAVLMEQGQM----IWQQRISQATGSTEIDRLSDVDTTP  235 (376)
T ss_dssp             C--------C--CCCCCE-EE-------TTEEEECCTTTEEEEEETTTCCE----EEEEECCC-----------CCCCCC
T ss_pred             CCcee---ec--CCCCcE-EE-------CCEEEEEcCCCEEEEEECCCCcE----EEEEecccCCCCcccccccccCCCc
Confidence            21100   00  000000 00       01112233344555555432211    11111100  0     0   10100


Q ss_pred             EcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-C-CCce
Q 009614          396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-I-REIV  473 (531)
Q Consensus       396 ~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~-~-~~~v  473 (531)
                      ...++.++.++.++.|..+|..+++.+....... ...+..   ++..++.++.++.|..+|..+++.+-... . ...+
T Consensus       236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  311 (376)
T 3q7m_A          236 VVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLL  311 (376)
T ss_dssp             EEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCC
T ss_pred             EEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcc
Confidence            1124578888889999999999999887765333 344443   45678888889999999999998763222 1 1222


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       474 ~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      .....  .+..|++++.+|.++++|..+++++.+.+.
T Consensus       312 ~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          312 TSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             CCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            22222  356788999999999999999999877664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.30  E-value=3.8e-05  Score=83.75  Aligned_cols=78  Identities=13%  Similarity=0.194  Sum_probs=60.9

Q ss_pred             CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCceEEEEEccCCCEEE
Q 009614          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~  486 (531)
                      +.|..||+.+++.+..+.+..++....+.+ .+.+++.++.||.+++||+.+++++..  .++.....-+.|.++|+.++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            789999999999998888776666667777 778888899999999999999998842  23333334567778887554


Q ss_pred             E
Q 009614          487 V  487 (531)
Q Consensus       487 s  487 (531)
                      +
T Consensus       536 ~  536 (677)
T 1kb0_A          536 S  536 (677)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.29  E-value=0.00014  Score=69.26  Aligned_cols=189  Identities=6%  Similarity=0.008  Sum_probs=123.0

Q ss_pred             ceeeeCCCCeEEeeec--CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcccC
Q 009614          240 SATLKPGDHELTLGQR--MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEH  316 (531)
Q Consensus       240 s~~fspdg~~lasgs~--dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~~  316 (531)
                      .+.|++++.+.++.+.  ++.|.+.|..+++.... .    .+..+. ....+++.  +..|+.+ -.++.|.++|..+.
T Consensus        25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-i----~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-H----KMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-E----ECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred             cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-E----ecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence            4789998765555433  68999999986654321 0    111221 22245554  4455444 45789999999887


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      +.+..+...                                                              ...  ...+
T Consensus        97 ~v~~~i~~g--------------------------------------------------------------~~~--g~gl  112 (266)
T 2iwa_A           97 SNIKNFTHQ--------------------------------------------------------------MKD--GWGL  112 (266)
T ss_dssp             EEEEEEECC--------------------------------------------------------------SSS--CCEE
T ss_pred             cEEEEEECC--------------------------------------------------------------CCC--eEEE
Confidence            755444211                                                              000  1123


Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEEeec---C---CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH---N---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (531)
Q Consensus       397 sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h---~---~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~  469 (531)
                      ++++ .|+.+..++.|.++|..+.+.+..+.-   .   ..++.+.|.  ++.+++....++.|.+.|..+++++.....
T Consensus       113 t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            3455 565666788999999999988887752   1   236778887  566666665688999999999998854332


Q ss_pred             C--------------CceEEEEEccCCCEE-EEEeCCCcEEEEeCCCC
Q 009614          470 R--------------EIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       470 ~--------------~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~~~  502 (531)
                      .              ...+.|+|+|+++.| +++...+++...++...
T Consensus       191 ~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          191 PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            1              356899999998755 55556788888887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.29  E-value=3.5e-05  Score=80.96  Aligned_cols=236  Identities=11%  Similarity=0.028  Sum_probs=141.4

Q ss_pred             CCCCeEEeeec-CCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEE-c-cCCCEEEEEe-----------------
Q 009614          245 PGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKF-S-LDGQYLASGG-----------------  303 (531)
Q Consensus       245 pdg~~lasgs~-dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~f-s-pdg~~Lasgs-----------------  303 (531)
                      +||+++..... +++|.+.|+...+.       .+.+. .....+..+++ + |++.+++.++                 
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~-------~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKC-------DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceE-------eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence            38888766554 66799999985432       22121 12245788888 5 9999998885                 


Q ss_pred             -CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          304 -EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       304 -~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                       .++.+.+.|..+.+....+.... .+..+.+.++.. .++.................  ...             ..+.
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~--~~~-------------d~v~  234 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTA--AEM-------------DHIV  234 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTC--CSE-------------EEEE
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccc--ccc-------------ceEE
Confidence             24578888888887777666543 334444443321 11111111111000000000  000             0000


Q ss_pred             EeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCC--CeE-EEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEe
Q 009614          383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--DRC-LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWE  457 (531)
Q Consensus       383 ~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~--~~~-l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd  457 (531)
                      .+....    ...+.++| .+..    +.|.+.|..+  ++. +..+.-.....++.++| |++++++++ .+.+|.++|
T Consensus       235 V~~~~~----~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid  305 (595)
T 1fwx_A          235 VFNIAE----IEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLD  305 (595)
T ss_dssp             EEEHHH----HHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEE
T ss_pred             Eeeccc----eeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcC-CCCEEEEeCCCCCeEEEEE
Confidence            010000    00123445 2222    5699999998  555 56666556678899999 888776655 678999999


Q ss_pred             CCCCe------------EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC----------CeEEEEeeeeec
Q 009614          458 VRRCQ------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD----------NQLYQQNQICLQ  513 (531)
Q Consensus       458 ~~~~~------------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~----------~~l~~~~~~~~~  513 (531)
                      +.+.+            ++...........++|+|+|...++...|+.|..||+..          .+.+++..+..+
T Consensus       306 ~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq  383 (595)
T 1fwx_A          306 VTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ  383 (595)
T ss_dssp             GGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred             CcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence            99753            444455566789999999995555677799999999987          667777776544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.24  E-value=9e-05  Score=72.38  Aligned_cols=217  Identities=14%  Similarity=0.062  Sum_probs=130.7

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCC
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD  326 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~  326 (531)
                      +..+..++.++.|..++.. +....       .+..+...+.++...+++. |+.++.++.|..+|.. ++....+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~-------~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKW-------RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEE-------EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEE-------EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            5567778788999999876 33211       1222344566667777776 5667788999999987 66554444332


Q ss_pred             CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEe
Q 009614          327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS  406 (531)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s  406 (531)
                      .....+..  .....+..               ++  +.+..++..     .+.+..+......+.++...+++.|..++
T Consensus       177 ~~~~~~~~--d~~g~l~v---------------~t--~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          177 AITSAASI--GKDGTIYF---------------GS--DKVYAINPD-----GTEKWNFYAGYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             CCCSCCEE--CTTCCEEE---------------ES--SSEEEECTT-----SCEEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred             CceeeeEE--cCCCEEEE---------------Ee--CEEEEECCC-----CcEEEEEccCCcceeceEECCCCeEEEEc
Confidence            22222111  11111111               11  334444421     12233333344668888888888888888


Q ss_pred             CCCcEEEEECCCCeEEEEeec-CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCE
Q 009614          407 ADKTVRLWQVGIDRCLRVFSH-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG  484 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h-~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~  484 (531)
                      .++.|..+|. ++..+..+.. ...+.++.+.+  +..|..++.+|.|..+|. +++.+ ........+.++...++|. 
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-  307 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-  307 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-
Confidence            8888888874 5555555553 23334455554  445777788889999996 55544 3433445567777777876 


Q ss_pred             EEEEeCCCcEEEEeCCCC
Q 009614          485 GIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       485 l~sgs~dg~I~iwd~~~~  502 (531)
                      |.+++.+|.+++......
T Consensus       308 l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          308 IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             EEEECTTSCEEEEEC---
T ss_pred             EEEEcCCCeEEEEecccc
Confidence            667889999999876543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.13  E-value=0.00018  Score=70.11  Aligned_cols=184  Identities=14%  Similarity=0.026  Sum_probs=111.3

Q ss_pred             CCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccc
Q 009614          296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR  375 (531)
Q Consensus       296 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (531)
                      +..|..++.++.|..+|.. ++..............+..  .....               ...++.++.+..++.. . 
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~g~---------------l~vgt~~~~l~~~d~~-g-  166 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SEDGT---------------IYVGSNDNYLYAINPD-G-  166 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTTSC---------------EEEECTTSEEEEECTT-S-
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCCCE---------------EEEEcCCCEEEEECCC-C-
Confidence            4567788889999999987 6554444332221111111  10111               1122334556666554 1 


Q ss_pred             ccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       376 ~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                         +.+..+......+.++...+++.|+.++  +.|..|| .+++.+..+. ....+.++...+ ++. |..++.++.|.
T Consensus       167 ---~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~  238 (330)
T 3hxj_A          167 ---TEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLY  238 (330)
T ss_dssp             ---CEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEE
T ss_pred             ---CEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEE
Confidence               1233333445567778887788666666  8899999 6777666654 445678888877 554 55567788899


Q ss_pred             EEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       455 Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      .+|...............+..+.+.+++ .|.+++.+|.|..+|. +++.+..+.
T Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          239 AINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             EECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             EECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence            9986444444444333444455666566 4777888889999996 677666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.13  E-value=8.7e-05  Score=81.05  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ec-CCCCceEEEEEccCCCEE
Q 009614          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YT-DIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       408 Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l  485 (531)
                      ++.|..||+.+++.+..+.+..++..-.+.. .+.+++.|+.||.|+.||.++++++- +. .......-+.|..+|+..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            4789999999999998887666555556666 78899999999999999999999883 32 222223457788898754


Q ss_pred             EE
Q 009614          486 IV  487 (531)
Q Consensus       486 ~s  487 (531)
                      ++
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.03  E-value=0.0026  Score=60.23  Aligned_cols=219  Identities=9%  Similarity=-0.035  Sum_probs=120.6

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~  315 (531)
                      ...+++++++..| ++-...+.|.+++.......       ..+.........|++++++..|+.+ ...+.|.++++..
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            4468999976555 45556789999998743221       1122222467899999976555544 5577899998854


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l  394 (531)
                      .............+..+.+.+.. ..++.....            .....+..+....     .....+ .........|
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~------------~~~~~I~~~~~dg-----~~~~~~~~~~~~~P~gi  172 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWN------------RDNPKIETSHMDG-----TNRRILAQDNLGLPNGL  172 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTT-TEEEEEECC------------SSSCEEEEEETTS-----CCCEEEECTTCSCEEEE
T ss_pred             CCEEEEEECCCCCccEEEEeeCC-CEEEEEECC------------CCCcEEEEEecCC-----CCcEEEEECCCCCCcEE
Confidence            32211111111222333333221 122221111            0012222222211     111111 1223457899


Q ss_pred             EEcCCC-e-EEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCC--
Q 009614          395 SWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--  470 (531)
Q Consensus       395 ~~sp~~-~-l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~--  470 (531)
                      ++++++ . +++....+.|.++|+........+........|+..  .+.++++....+.|.++|..+++.+......  
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~  250 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence            999975 4 455556789999999765544444333344666653  3445555556789999999999887543322  


Q ss_pred             CceEEEEEccCCC
Q 009614          471 EIVSAVCYCPDGK  483 (531)
Q Consensus       471 ~~v~~v~~spdg~  483 (531)
                      .....|++.|++.
T Consensus       251 ~~p~gi~~~~~~~  263 (267)
T 1npe_A          251 TRLYGITIALSQC  263 (267)
T ss_dssp             CCCCCEEEECSCC
T ss_pred             cccceeeecCccC
Confidence            2467788888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.00  E-value=0.00045  Score=72.59  Aligned_cols=115  Identities=11%  Similarity=0.048  Sum_probs=80.8

Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCCe------------EEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR------------CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~------------~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      ...++.++|+|  .++++-.+.+|.++|+.+.+            ......-......++|+| ++...++.-.|++|.+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVK  356 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEE
Confidence            56789999999  45555578999999998653            344444556788999999 8865667778999999


Q ss_pred             EeCCC----------CeEEE-ecCCCCce-----EEEEEccCCCEEEEEeCC--CcE-----------EEEeCCCCeEE
Q 009614          456 WEVRR----------CQVVD-YTDIREIV-----SAVCYCPDGKGGIVGTMT--GNC-----------RFYDIKDNQLY  505 (531)
Q Consensus       456 wd~~~----------~~~~~-~~~~~~~v-----~~v~~spdg~~l~sgs~d--g~I-----------~iwd~~~~~l~  505 (531)
                      ||+.+          .+++. +..|-.+-     ..+.++|||++|+++..-  ..+           .++|+.++++.
T Consensus       357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            99977          45554 33332221     122457999999997652  233           89999876643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.98  E-value=0.00065  Score=72.34  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=77.6

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCC--------------ce--------------------------EEEEEeeCC
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN--------------YV--------------------------TSVAFNPVD  440 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~--------------~V--------------------------~sv~fsp~d  440 (531)
                      .++.++.+|.+.++|..+++.+..+....              ++                          ..++++| +
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~  396 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E  396 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence            36678889999999999999887764221              11                          2357888 5


Q ss_pred             CCEEEEEe-------------------------------------CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC
Q 009614          441 DNYFISGS-------------------------------------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (531)
Q Consensus       441 ~~~l~sgs-------------------------------------~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~  483 (531)
                      ..+|++.+                                     .+|.|..||+.+++++-...+...+....+...+.
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg  476 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG  476 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence            56665543                                     35789999999998773322222333333334566


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          484 GGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      .+++++.||.|+.||..+++++.+++..
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            7888999999999999999999887753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.95  E-value=0.0026  Score=61.65  Aligned_cols=224  Identities=13%  Similarity=0.060  Sum_probs=122.5

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcccCc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE  317 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~  317 (531)
                      .++++++|.++++-...++|..++.......         +..-...+..|++.++|+++++.....  .|..++..+++
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEEE---------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCceEE---------EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            5799999997777778899999987642211         111234688999999999666554332  36666666665


Q ss_pred             cccceecCCCC-CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc--ccc--Cccee--EeecCCCC
Q 009614          318 RLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF--RLL--EKPLH--EFQGHSSE  390 (531)
Q Consensus       318 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~--~~~~h~~~  390 (531)
                      ........... ...+..  .....++.              .....+.++.++....  .+.  ...+.  ........
T Consensus       107 ~~~~~~~~~~~~~~g~~~--~~~~~~~v--------------~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITP--LSDTQYLT--------------ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEEEECTTCSCEEEEEE--SSSSEEEE--------------EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEEeCCCccccCcccc--cCCCcEEE--------------EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            32211111100 001110  01111111              1112334444443210  000  00000  00011123


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCC-CeE--EEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       391 I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~-~~~--l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      .+.|  ++++  ++++-...+.|..|++.. +..  ...+........|++++ +++++++....+.|.+++.. ++...
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            4455  6776  445556678999999874 321  22222223456789999 88888887778899999986 55432


Q ss_pred             ---ecCCCCceEEEEEc---cCCCEEEEEeCCC
Q 009614          466 ---YTDIREIVSAVCYC---PDGKGGIVGTMTG  492 (531)
Q Consensus       466 ---~~~~~~~v~~v~~s---pdg~~l~sgs~dg  492 (531)
                         ....-..+++++|.   |+++.|++++..+
T Consensus       247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence               22223568999999   8988887776544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.92  E-value=0.019  Score=63.57  Aligned_cols=246  Identities=11%  Similarity=0.045  Sum_probs=138.8

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+.++...++|.+.+ |+.++-+.+|+..................-....|.++...++|.+.+ |+.+| |.+|+..++
T Consensus       216 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~  292 (795)
T 4a2l_A          216 QIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTD  292 (795)
T ss_dssp             CEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEETTTT
T ss_pred             eeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCC
Confidence            344566666666544 444444888887643321100000000001235699999998887544 55554 888987765


Q ss_pred             ccccceecCC------CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc---CcceeEeecC
Q 009614          317 ERLDGFDVQD------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EKPLHEFQGH  387 (531)
Q Consensus       317 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h  387 (531)
                      .... +....      .......+..+..+.+..               ++..+-+..++.......   ..+. .-.-.
T Consensus       293 ~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---------------gt~~~Gl~~~~~~~~~~~~~~~~~~-~~~l~  355 (795)
T 4a2l_A          293 SFAS-YSSNPVENGSLSQRSVRSIFMDSQGGMWL---------------GTYFGGLNYYHPIRNRFKNIRNIPY-KNSLS  355 (795)
T ss_dssp             EEEE-ECCCTTSTTSCSSSCEEEEEECTTSCEEE---------------EESSSCEEEECGGGGSSEEECCCTT-SSSCS
T ss_pred             eEEE-EecCCCCCCCCCCCcEEEEEEeCCcCEEE---------------EECCCCeEEeCCCcccceEEcCCCC-CCCCC
Confidence            4321 11110      001111222222222221               111222333332211100   0000 00012


Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee---------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ...|.++...++|.|..|+.++-|..|+..+++......         ....|.++...+ ++++|..|+.++-|.+||.
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence            456899999888888889988889999988776544321         135789999887 7775667778788999999


Q ss_pred             CCCeEEEecC-----CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          459 RRCQVVDYTD-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       459 ~~~~~~~~~~-----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      .+++...+..     ....|.++...++|.+.+ |+.+ -+.+||..+++..
T Consensus       435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFT  484 (795)
T ss_dssp             TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEE
T ss_pred             CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEE
Confidence            9887765542     345789999988887544 4444 4889998887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.91  E-value=0.0036  Score=58.97  Aligned_cols=202  Identities=12%  Similarity=0.118  Sum_probs=124.4

Q ss_pred             ccccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          236 DRHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       236 ~~~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      +....++++|++..| ++...++.|...|.. +. .....    .+.+ ....-.|++.+++.++++.-.++.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i----~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTI----PLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEE----ECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEE----ecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            445568999976655 557778888888876 22 11111    1222 2467788999888776765567788888875


Q ss_pred             cCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      ....+......                                                    ..++. ...++.....|
T Consensus       100 ~~~~i~~~~~~----------------------------------------------------~~~~~-~~~~N~g~EGL  126 (255)
T 3qqz_A          100 PNSEVKILKKI----------------------------------------------------KIPLQ-ESPTNCGFEGL  126 (255)
T ss_dssp             TTCCEEEEEEE----------------------------------------------------ECCCS-SCCCSSCCEEE
T ss_pred             CCCeeeeeeee----------------------------------------------------ccccc-cccccCCcceE
Confidence            43321100000                                                    00000 01235568899


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEECC---CCeEEEEee--------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          395 SWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       395 ~~sp~~-~l~s~s~Dg~V~lwdl~---~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      +|.|.+ .|+++.......||.+.   ....+..+.        +...+.+++++|..+.+++.......|.++|.... 
T Consensus       127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-  205 (255)
T 3qqz_A          127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-  205 (255)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-
T ss_pred             EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-
Confidence            999988 66666665555555553   112222221        23457899999987888888888899999997755 


Q ss_pred             EEE---ecC-C------CCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          463 VVD---YTD-I------REIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       463 ~~~---~~~-~------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      ++.   +.. .      ....-.|+|.++|++.++ +.-+.++.|.-
T Consensus       206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            443   221 1      135688999999985444 66666666643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.82  E-value=0.00045  Score=65.07  Aligned_cols=121  Identities=13%  Similarity=0.064  Sum_probs=90.5

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEE--EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS--VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT  467 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~s--v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~  467 (531)
                      ....|.|+.+.++.+.+.+|.|+++|+.+++.+..+ -......  +++.  .+.++++.-.++.+.+||..+.+++...
T Consensus        56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            457888875337778888899999999999988877 4444433  5543  3556666667899999999999988644


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeeccc
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK  515 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~  515 (531)
                      .....-..++  +|++.|+.+..++.|+++|..+.+.+..+++...++
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~  178 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ  178 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence            4333334444  678888888889999999999999999888765443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.79  E-value=0.00049  Score=64.83  Aligned_cols=122  Identities=14%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             CeeEEEEcCCC-eEEEEeCCC--cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          390 EVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg--~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      ....|.|+ ++ ++.+.+.+|  .|+.+|+.+++.+..+.-..........+..+.++++.-.++.+.+||..+.+++..
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            34788898 56 666666665  899999999999998875555444333332344555555689999999999998864


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecc
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG  514 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~  514 (531)
                      ......-..+  ++|++.|+.+..++.|+++|..+.+.+..+++...+
T Consensus       123 i~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A          123 FNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             EECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred             EECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence            4433322334  467887877777888999999999999988876444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.78  E-value=0.0033  Score=61.32  Aligned_cols=108  Identities=15%  Similarity=0.076  Sum_probs=68.8

Q ss_pred             CeeEEEEcCCC-eEEEE-eCCCcEEEEECCCCe--EEEEe-ecCCceEEEEEeeCCCCEEEEEeC----------CCeEE
Q 009614          390 EVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFNPVDDNYFISGSI----------DGKVR  454 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~-s~Dg~V~lwdl~~~~--~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~----------Dg~I~  454 (531)
                      ....|+++|++ .|+.+ ...+.|.+|++....  ....+ .... ...|++.+ +++++++...          .+.|.
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~  263 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI  263 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence            34678999998 45544 566889999987521  11222 2233 78899999 8887777654          46788


Q ss_pred             EEeCCCCeEE-EecCC----CCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          455 IWEVRRCQVV-DYTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       455 Iwd~~~~~~~-~~~~~----~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      .+|.. ++.+ .+...    ...++.+++ .+++++++....+.|..+++..
T Consensus       264 ~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          264 KFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            88875 5544 33322    234666666 4666555555677888888753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.78  E-value=0.029  Score=56.34  Aligned_cols=231  Identities=6%  Similarity=-0.090  Sum_probs=126.7

Q ss_pred             eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceecCCC
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (531)
                      +|+.+. ...|+..++......        .+......+..|+|.+.+..| ++-...+.|..+++........+.....
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~--------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~  159 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE  159 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred             eeEeec-CccceeeccCCCcEE--------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence            444333 356777777643221        122233468899999755555 4545678899998876542222222222


Q ss_pred             CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee-EeecCCCCeeEEEEcCCC-eE-EE
Q 009614          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLDLSWSKNG-FL-LS  404 (531)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~I~~l~~sp~~-~l-~s  404 (531)
                      .+..+.+.+... .++..+.              ....+.+.+...     .... .+.........|++.|.+ .| ++
T Consensus       160 ~p~glavd~~~g-~lY~~d~--------------~~~~I~~~~~dg-----~~~~~l~~~~l~~P~giavdp~~g~ly~t  219 (386)
T 3v65_B          160 SPGGLAVDWVHD-KLYWTDS--------------GTSRIEVANLDG-----AHRKVLLWQSLEKPRAIALHPMEGTIYWT  219 (386)
T ss_dssp             CCCCEEEETTTT-EEEEEET--------------TTTEEEECBTTS-----CSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CccEEEEEeCCC-eEEEEcC--------------CCCeEEEEeCCC-----CceEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence            233333322211 1111111              112233322211     1111 122233567899999865 44 44


Q ss_pred             EeCC-CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccC
Q 009614          405 SSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPD  481 (531)
Q Consensus       405 ~s~D-g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spd  481 (531)
                      -... +.|..+++.......... .-...+.|+|+|..+.++++-+..+.|..+|+....... ..........|++ ..
T Consensus       220 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~  298 (386)
T 3v65_B          220 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FE  298 (386)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ET
T ss_pred             ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-EC
Confidence            4444 778888887544333332 334578999998455555666667889999987643332 2223445677888 45


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       482 g~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +.++++-...+.|..++..+++.+..+.
T Consensus       299 ~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          299 DSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            5566666677889999977777665544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.78  E-value=0.013  Score=57.59  Aligned_cols=121  Identities=16%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             CeeEEEE--cCC-C--eEEEEeCCCcEEEEECC-------CCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          390 EVLDLSW--SKN-G--FLLSSSADKTVRLWQVG-------IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       390 ~I~~l~~--sp~-~--~l~s~s~Dg~V~lwdl~-------~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      .+..+++  +|. +  +++....+|.+..|++.       +.+.++.|.....+-.+...+ ....|+.+-.+.-|..++
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEEe
Confidence            3445555  553 3  67888888999999882       446778888888899999998 778888888887777777


Q ss_pred             CC-----CCeEEEecC---CCCceEEEEE--ccCCC-EEEEEe-CCCcEEEEeCC-CCeEEEEeeee
Q 009614          458 VR-----RCQVVDYTD---IREIVSAVCY--CPDGK-GGIVGT-MTGNCRFYDIK-DNQLYQQNQIC  511 (531)
Q Consensus       458 ~~-----~~~~~~~~~---~~~~v~~v~~--spdg~-~l~sgs-~dg~I~iwd~~-~~~l~~~~~~~  511 (531)
                      ..     +.+++...+   ....+..|++  .++++ +|++++ .+++..+||.. +.+.+..+.+.
T Consensus       208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig  274 (355)
T 3amr_A          208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT  274 (355)
T ss_dssp             CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred             CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence            55     355665432   2246777777  66776 666666 56789999997 77888877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.77  E-value=0.0024  Score=68.17  Aligned_cols=63  Identities=16%  Similarity=0.039  Sum_probs=44.0

Q ss_pred             CCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      .+|.|..||+.+++++-...+..+...-.....+.++++++.||.++.||.++|+++.++++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            347899999999987732222222211112235677888999999999999999999888643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.76  E-value=0.00098  Score=62.14  Aligned_cols=124  Identities=11%  Similarity=-0.030  Sum_probs=90.0

Q ss_pred             CCeeEEEEcCCCeEEEEeCC--CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          389 SEVLDLSWSKNGFLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~D--g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      .....|.|+++.++.+.+.+  ..|+.+|+.+++.+....-..........+..+.+++..-.++.+.+||..+.+++..
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            45678999873255566654  4899999999999998875544443333332455556666789999999999998864


Q ss_pred             cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecc
Q 009614          467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG  514 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~  514 (531)
                      ......-..++  +|+..|+++..++.|.++|..+.+.+..+++...+
T Consensus       101 i~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g  146 (243)
T 3mbr_X          101 FRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG  146 (243)
T ss_dssp             EECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             EeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence            44444334454  57777777777899999999999999988876544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.0013  Score=71.39  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +|.|..||+.+++.+-............+...+.++++++.||.++.||..+++++.+++..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            48899999999998733333333333445557888999999999999999999999887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.70  E-value=0.0023  Score=68.27  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=43.5

Q ss_pred             CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       450 Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      +|.|..||+.+++.+-.......+..-.....+.++++|+.||.++.||.++|+++.+++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            6889999999998773222222222111222466788899999999999999999988875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.69  E-value=0.0062  Score=65.94  Aligned_cols=246  Identities=12%  Similarity=0.098  Sum_probs=130.5

Q ss_pred             ceeeeC-CCCeEEeeecCC-----------eEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeC-C
Q 009614          240 SATLKP-GDHELTLGQRMR-----------RVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGE-D  305 (531)
Q Consensus       240 s~~fsp-dg~~lasgs~dg-----------~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~-D  305 (531)
                      +.++.| ++++++.|+.+.           .+.+||.......  .+   ..+ ..+.....++++..+|++++.|+. +
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~--~~---~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS--DR---TVTVTKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC--CC---EEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE--eC---cccCCCCCCccccccCCCCCCEEEeCCCCC
Confidence            457777 888888876542           5788888765432  11   112 223333445778889999999984 5


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcc--ccccC----c
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV--FRLLE----K  379 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~  379 (531)
                      ..+.+||..+.+-...-..+.......... ...+.++.+.....        .......+.+|++..  |....    .
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~-~~dg~iyv~GG~~~--------~~~~~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSAT-MSDGRVFTIGGSWS--------GGVFEKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEE-CTTSCEEEECCCCC--------SSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred             CceEEecCcCCceeECCCCCccccccceEE-ecCCeEEEEeCccc--------CCcccccceEeCCCCCcceeCCCcccc
Confidence            689999998765332211111111111111 11122222221000        000112345555433  22110    1


Q ss_pred             ceeEeecCCCCeeEEEEcCCC-eEEEEeC---------CCcEEEEECCCCeEEEEee-cC---------CceEEEEEeeC
Q 009614          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSA---------DKTVRLWQVGIDRCLRVFS-HN---------NYVTSVAFNPV  439 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~~-~l~s~s~---------Dg~V~lwdl~~~~~l~~~~-h~---------~~V~sv~fsp~  439 (531)
                      ++... .+.     ..+..++ .++.++.         ...+..||..+........ +.         ..-.++.|...
T Consensus       336 p~~~~-~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~  409 (656)
T 1k3i_A          336 PMLTA-DKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  409 (656)
T ss_dssp             GGCCC-CTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             ccccc-ccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence            11111 010     1112233 3334433         3457889988876554332 11         12355666554


Q ss_pred             CCCEEEEEeCCC-----------eEEEEeCCCCeEEEec----CCCCceEEEEEccCCCEEEEEeCC-----------Cc
Q 009614          440 DDNYFISGSIDG-----------KVRIWEVRRCQVVDYT----DIREIVSAVCYCPDGKGGIVGTMT-----------GN  493 (531)
Q Consensus       440 d~~~l~sgs~Dg-----------~I~Iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~d-----------g~  493 (531)
                      ++++++.|+.++           .|.+||..+.+.....    .....-.+++..|+|+++++|+.+           ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            778888887543           6889998887655443    112223455677899999999865           46


Q ss_pred             EEEEeCCCCeEE
Q 009614          494 CRFYDIKDNQLY  505 (531)
Q Consensus       494 I~iwd~~~~~l~  505 (531)
                      +.+||..+++..
T Consensus       490 v~~ydp~t~~W~  501 (656)
T 1k3i_A          490 PEIYVPEQDTFY  501 (656)
T ss_dssp             CEEEEGGGTEEE
T ss_pred             eEEEcCCCCcee
Confidence            899999887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.65  E-value=0.029  Score=62.06  Aligned_cols=239  Identities=8%  Similarity=0.023  Sum_probs=137.4

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      .+.++...++|.+.+ |+..| |.+|+..................-....|.+|...++|. |..|+.++-|.+|+..+.
T Consensus       264 ~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~  340 (795)
T 4a2l_A          264 YIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN  340 (795)
T ss_dssp             BEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred             eEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence            355566777776544 44454 778886643321100000000011235799999999887 556777777888987654


Q ss_pred             ccccceecCC-----CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee------
Q 009614          317 ERLDGFDVQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ------  385 (531)
Q Consensus       317 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  385 (531)
                      ... .+....     .......+..+..+.+..               ++.++-+..++.....     ...+.      
T Consensus       341 ~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---------------Gt~~~Gl~~~~~~~~~-----~~~~~~~~~~~  399 (795)
T 4a2l_A          341 RFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI---------------GTNDGGLNLYNPITQR-----FTSYTLQEDES  399 (795)
T ss_dssp             SSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE---------------EESSSCEEEECTTTCC-----EEEECCC----
T ss_pred             cce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE---------------EECCCCeEEEcCCCCc-----EEEEecCCCCc
Confidence            321 111100     001111222222222211               2222234444433211     11111      


Q ss_pred             ---cCCCCeeEEEEcCCCe-EEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEE
Q 009614          386 ---GHSSEVLDLSWSKNGF-LLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIW  456 (531)
Q Consensus       386 ---~h~~~I~~l~~sp~~~-l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw  456 (531)
                         -....|.++...+++. |..|+.++-|.+||..+++......     ....|.++...+ ++.+.+.. . +-|.+|
T Consensus       400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~  476 (795)
T 4a2l_A          400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGT-L-SALVRF  476 (795)
T ss_dssp             --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-S-SCEEEE
T ss_pred             ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-c-CceeEE
Confidence               1235789999888886 9999988889999998876544321     246799999887 67655544 4 458999


Q ss_pred             eCCCCeEEEecC-------CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          457 EVRRCQVVDYTD-------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       457 d~~~~~~~~~~~-------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      |..+++...+..       ....|.++...++|.+.+. +. +-+..||..+++.
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETTEE
T ss_pred             eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCCeE
Confidence            998887665432       2357899999999985554 44 4588899887765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.61  E-value=0.065  Score=52.92  Aligned_cols=240  Identities=7%  Similarity=-0.070  Sum_probs=128.0

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcccCc
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~  317 (531)
                      .|.+..++ .+|+.+. ...|+..+.......        .+......+..|+|++.+..|+ +-...+.|..+++....
T Consensus        37 ~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~--------~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           37 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT--------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             CEEESSSC-CEEEEEC-BSCEEEECTTSCCEE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cccccccC-ceeEeec-ccceEEEeCCCCeeE--------EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence            34444443 3344333 345766666533211        1222334578999997655554 44567889989887654


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE-eecCCCCeeEEEE
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSW  396 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~  396 (531)
                      ....+......+..+.+.+... .++..+.              ....+.+.+...     ..... +.........|++
T Consensus       107 ~~~~~~~~~~~p~glavd~~~g-~ly~~d~--------------~~~~I~~~~~dG-----~~~~~l~~~~l~~P~~iav  166 (349)
T 3v64_C          107 VEEVVSTGLESPGGLAVDWVHD-KLYWTDS--------------GTSRIEVANLDG-----AHRKVLLWQSLEKPRAIAL  166 (349)
T ss_dssp             CEEEECSSCSCCCEEEEETTTT-EEEEEET--------------TTTEEEEEETTS-----CSCEEEECTTCSCEEEEEE
T ss_pred             ceEEEeCCCCCccEEEEecCCC-eEEEEcC--------------CCCeEEEEcCCC-----CceEEEEeCCCCCcceEEE
Confidence            3222222222233333322211 1111111              112232222211     11111 2223345789999


Q ss_pred             cCCC--eEEEEeCC-CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCC
Q 009614          397 SKNG--FLLSSSAD-KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIRE  471 (531)
Q Consensus       397 sp~~--~l~s~s~D-g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~  471 (531)
                      .|.+  ++++-... +.|..+++.......... .-...+.|+++|..+.++++-...+.|..+|+....... ......
T Consensus       167 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~  246 (349)
T 3v64_C          167 HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP  246 (349)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             ecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC
Confidence            9854  44454445 788888886543333222 334578999998445555555667889999987643322 222344


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ....+++ ..+.++++-...+.|..++..+|+....+.
T Consensus       247 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          247 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            5677888 455555666667889999876776655443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.61  E-value=0.0092  Score=65.70  Aligned_cols=243  Identities=7%  Similarity=0.008  Sum_probs=116.8

Q ss_pred             ccceeee-CCCCeEEeeec-----CCeEEEEeCCCC-cccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC-----
Q 009614          238 HGSATLK-PGDHELTLGQR-----MRRVRVHPVKKQ-SRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-----  305 (531)
Q Consensus       238 ~~s~~fs-pdg~~lasgs~-----dg~I~vwd~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----  305 (531)
                      +...+|+ |||++||-+..     ..+|+++++.++ .. +..     .+..   ....+.|+|||+.|+....|     
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~-----~~~~---~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IAD-----KVSG---TNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCC-----CEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCc-----cccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence            3457899 99999885433     235999999876 42 110     1111   13467899999988777665     


Q ss_pred             CcEEEEEcccCccccc--eecCCCC-CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcc-e
Q 009614          306 GTVRVWKVIEHERLDG--FDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP-L  381 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  381 (531)
                      ..|.++++.++.....  +...... .....++++....++...             ......+++++.....  ..+ +
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~-------------~~~~~~l~~~d~~~~~--~~~~~  311 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ-------------SPETAEVHLLDLRKGN--AHNTL  311 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE-------------CSSCEEEEEEESSSCT--TCCCE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec-------------CCCCceEEEEECCCCC--CCcee
Confidence            2577788876643211  1111111 112223333222111111             1123344444443210  011 0


Q ss_pred             eEe-ecCCCCeeEEEEcCCCe-EEEEeCC----CcEEEEECCC-CeEEE-EeecCCceEEEEEeeCCCCEEEEEeCCCe-
Q 009614          382 HEF-QGHSSEVLDLSWSKNGF-LLSSSAD----KTVRLWQVGI-DRCLR-VFSHNNYVTSVAFNPVDDNYFISGSIDGK-  452 (531)
Q Consensus       382 ~~~-~~h~~~I~~l~~sp~~~-l~s~s~D----g~V~lwdl~~-~~~l~-~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~-  452 (531)
                      ..+ .........+.|+..+. ++.+..+    ..|..+++.+ +.... .+.+...+.--.+.+..+.++++...++. 
T Consensus       312 ~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~  391 (751)
T 2xe4_A          312 EIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLT  391 (751)
T ss_dssp             EESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEE
T ss_pred             EEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEE
Confidence            222 22344555666655554 4444433    3567777765 33333 44444433222344423455666677775 


Q ss_pred             -EEEEeC-------CCCe-EEEecC-CCCceEEEEE----ccCCCEE-EEEeCC---CcEEEEeCCCCeE
Q 009614          453 -VRIWEV-------RRCQ-VVDYTD-IREIVSAVCY----CPDGKGG-IVGTMT---GNCRFYDIKDNQL  504 (531)
Q Consensus       453 -I~Iwd~-------~~~~-~~~~~~-~~~~v~~v~~----spdg~~l-~sgs~d---g~I~iwd~~~~~l  504 (531)
                       |.++++       .+++ ...+.- ....+..+.+    ++++..+ ++.+..   +.+..+|+.+++.
T Consensus       392 ~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          392 RIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             EEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             EEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence             555565       3444 333211 1122333333    3466544 444332   3578888877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=0.07  Score=58.80  Aligned_cols=246  Identities=10%  Similarity=0.011  Sum_probs=131.9

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCccccccc-------ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL-------YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~-------~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.++...++|. +..|+..+-|.+++...........       .......-....|.+|...++|. |..|+.++-|.
T Consensus       259 ~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~  336 (781)
T 3v9f_A          259 YIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN  336 (781)
T ss_dssp             CEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred             eEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence            344556666665 4455554557778776443211100       00000011345799999998886 56677667788


Q ss_pred             EEEcccCccccceecC------C--CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          310 VWKVIEHERLDGFDVQ------D--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      .++..+.... .+...      .  .......+..+..+.+..               ++..+-+..++........- .
T Consensus       337 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi---------------gt~~~Gl~~~~~~~~~~~~~-~  399 (781)
T 3v9f_A          337 FISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI---------------GTDGGGINVFENGKRVAIYN-K  399 (781)
T ss_dssp             EECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSCEEE---------------EEBSSCEEEEETTEEEEECC--
T ss_pred             EeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCCEEE---------------EeCCCcEEEEECCCCeEEEc-c
Confidence            8887654321 11100      0  001111111122122211               11112233333322111000 0


Q ss_pred             eEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      .........|.++...+++.|..|+.++-|..+|..+++......   ....|.++...+ ++.+ ..|+. +-|..||.
T Consensus       400 ~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-wigt~-~Gl~~~~~  476 (781)
T 3v9f_A          400 ENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKI-WIGTH-AGVFVIDL  476 (781)
T ss_dssp             ----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEE-EEEET-TEEEEEES
T ss_pred             CCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCE-EEEEC-CceEEEeC
Confidence            000123467899988888877778887779999988776543321   346789998877 5654 44555 56999998


Q ss_pred             CCCeEEEecCC------CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          459 RRCQVVDYTDI------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       459 ~~~~~~~~~~~------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      .+++...+...      ...|.+++..++|.+ .+|+..+-+..||..+++..
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~  528 (781)
T 3v9f_A          477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVR  528 (781)
T ss_dssp             SSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEE
T ss_pred             CCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEE
Confidence            87665433221      357899999998875 44555344778998776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.49  E-value=0.0054  Score=66.53  Aligned_cols=201  Identities=11%  Similarity=0.074  Sum_probs=121.0

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEc---ccC-CCE-EEEEEccCCCEEEEEeCCCcEEEEEcccCccccc
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHE-GSI-LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG  321 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~---~H~-~~I-~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~  321 (531)
                      +..+.+++.++.|..+|..+++.....-... ...   .+. ..+ ..+.+  .+..++.++.|+.|..+|..+|+.+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEV-AKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCC-CGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCC-CccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            4566667778889888887766543211000 000   000 001 11222  355788888999999999999986554


Q ss_pred             eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCe
Q 009614          322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF  401 (531)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~  401 (531)
                      +.......                                           .          ......++    + .++.
T Consensus       143 ~~~~~~~~-------------------------------------------~----------~~~~~~P~----v-~~~~  164 (668)
T 1kv9_A          143 QQTTDPAK-------------------------------------------P----------YSITGAPR----V-VKGK  164 (668)
T ss_dssp             EECSCTTS-------------------------------------------S----------CBCCSCCE----E-ETTE
T ss_pred             eccCCCCC-------------------------------------------c----------ceecCCCE----E-ECCE
Confidence            43211000                                           0          00000111    0 1344


Q ss_pred             EEEEe------CCCcEEEEECCCCeEEEEeecC--C------------------------------ceEEEEEeeCCCCE
Q 009614          402 LLSSS------ADKTVRLWQVGIDRCLRVFSHN--N------------------------------YVTSVAFNPVDDNY  443 (531)
Q Consensus       402 l~s~s------~Dg~V~lwdl~~~~~l~~~~h~--~------------------------------~V~sv~fsp~d~~~  443 (531)
                      ++.+.      .++.|..+|..+++.+..+...  .                              ....++++| ...+
T Consensus       165 v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~  243 (668)
T 1kv9_A          165 VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDL  243 (668)
T ss_dssp             EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTE
T ss_pred             EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCE
Confidence            44443      2588999999999998877421  0                              012468888 7778


Q ss_pred             EEEEeCCCe-------------------EEEEeCCCCeEEE-ec--CCC-------CceEEEEEccCCC---EEEEEeCC
Q 009614          444 FISGSIDGK-------------------VRIWEVRRCQVVD-YT--DIR-------EIVSAVCYCPDGK---GGIVGTMT  491 (531)
Q Consensus       444 l~sgs~Dg~-------------------I~Iwd~~~~~~~~-~~--~~~-------~~v~~v~~spdg~---~l~sgs~d  491 (531)
                      ++.++.++.                   |..+|..+++.+- +.  .|.       .++....+..+|+   .|++++.+
T Consensus       244 vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~  323 (668)
T 1kv9_A          244 LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKN  323 (668)
T ss_dssp             EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTT
T ss_pred             EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCC
Confidence            888877763                   9999999998872 22  122       2333333445775   68899999


Q ss_pred             CcEEEEeCCCCeEEEEee
Q 009614          492 GNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       492 g~I~iwd~~~~~l~~~~~  509 (531)
                      |.++++|..+|+++...+
T Consensus       324 G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          324 GFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             SEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEecccc
Confidence            999999999999986544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.44  E-value=0.0037  Score=66.65  Aligned_cols=80  Identities=9%  Similarity=0.080  Sum_probs=55.0

Q ss_pred             CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce--EEEEEccCCCE
Q 009614          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGKG  484 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v--~~v~~spdg~~  484 (531)
                      .++.|..||+.+++.+..+.+..++..-.... .+.+++.|+.||.++.||.++++++-.......+  .-+.|..+|+.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            36889999999999987776444443322333 5677888999999999999999988432222222  23667778864


Q ss_pred             EEE
Q 009614          485 GIV  487 (531)
Q Consensus       485 l~s  487 (531)
                      .++
T Consensus       543 Yv~  545 (582)
T 1flg_A          543 YLG  545 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.13  Score=56.65  Aligned_cols=240  Identities=11%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceE--EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE--FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~--l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      .+.++...++|.+.+ |+.. -+.+|+..+....  .......  ..-....|.+|...++|. |..|+..+-|.+++..
T Consensus       212 ~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~--~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          212 DVRCIYKDTNGNIWI-GTSK-GLALFNANTETFT--NFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             SEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE--C-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             ceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEE--EEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            345566677776554 4444 5888887643321  1110000  011245799999988886 5556664558888887


Q ss_pred             cCcccccee-------cCC-----CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCccee
Q 009614          315 EHERLDGFD-------VQD-----TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH  382 (531)
Q Consensus       315 ~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (531)
                      ++.......       ...     .......+..+..+.+..               ++..+-+..++.....     ..
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi---------------gt~~~Gl~~~~~~~~~-----~~  346 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI---------------GTWGGGINFISNAPPT-----FH  346 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE---------------EEBSSCEEEECSSCCS-----CE
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE---------------EecCCeEEEeCCCCCc-----ce
Confidence            654321110       000     000111111222222111               1112223333332111     11


Q ss_pred             Ee----------ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe----ecCCceEEEEEeeCCCCEEEEEe
Q 009614          383 EF----------QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       383 ~~----------~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~----~h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      .+          ......|.++...++|.|..|+.++-|..||..++......    .....|.++...+ ++.+. .|+
T Consensus       347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt  424 (781)
T 3v9f_A          347 TWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGT  424 (781)
T ss_dssp             EEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEE
T ss_pred             eeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEe
Confidence            11          11235689999888888888887777899998765432211    1346789998876 66554 467


Q ss_pred             CCCeEEEEeCCCCeEEEecC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          449 IDGKVRIWEVRRCQVVDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      .++-|..+|..+++...+..   ....|.++...++|. |.+|+. +-|..||..+++..
T Consensus       425 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          425 YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCC
T ss_pred             ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEE
Confidence            77789999998887765432   346789999888886 455555 55889998876653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.38  E-value=0.059  Score=50.59  Aligned_cols=187  Identities=10%  Similarity=0.111  Sum_probs=109.7

Q ss_pred             EEcccCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          279 EFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       279 ~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      .+.+-.+.+..|+|+|++..|++ ...++.|...|.. ++....+..                                 
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l---------------------------------   66 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL---------------------------------   66 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC---------------------------------
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec---------------------------------
Confidence            34555678999999998765554 6667788877775 443332211                                 


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeE---EEEee-------
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRVFS-------  426 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~---l~~~~-------  426 (531)
                                                 . -....-.|++.+++ ++++.-.++.+.++++.....   +....       
T Consensus        67 ---------------------------~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~  118 (255)
T 3qqz_A           67 ---------------------------D-FVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESP  118 (255)
T ss_dssp             ---------------------------S-SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCC
T ss_pred             ---------------------------C-CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccccc
Confidence                                       1 11346677787777 545555667888888765432   22221       


Q ss_pred             cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC------CeEEEe-----cCCCCceEEEEEccCC-CEEEEEeCCCcE
Q 009614          427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------CQVVDY-----TDIREIVSAVCYCPDG-KGGIVGTMTGNC  494 (531)
Q Consensus       427 h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~------~~~~~~-----~~~~~~v~~v~~spdg-~~l~sgs~dg~I  494 (531)
                      .+.....|+|+| .++.|+++.......||.+..      -++...     ......+.+++++|.. .+++.......+
T Consensus       119 ~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L  197 (255)
T 3qqz_A          119 TNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL  197 (255)
T ss_dssp             CSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence            344568999999 665555555544444444431      122211     1123357899999954 555666667789


Q ss_pred             EEEeCCCCeEEEEeeeeeccc--ccCCCceeeeEEEee
Q 009614          495 RFYDIKDNQLYQQNQICLQGK--KKLPGKRITGFQVVK  530 (531)
Q Consensus       495 ~iwd~~~~~l~~~~~~~~~~~--kk~~~~~It~l~f~p  530 (531)
                      .++|.. ++++....+.. +.  .......-.||+|.|
T Consensus       198 ~~~d~~-g~~~~~~~L~~-g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          198 QEVTLV-GEVIGEMSLTK-GSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             EEECTT-CCEEEEEECST-TGGGCSSCCCSEEEEEECT
T ss_pred             EEEcCC-CCEEEEEEcCC-ccCCcccccCCCCeeEECC
Confidence            999977 55666555431 11  011234557777754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.005  Score=62.99  Aligned_cols=112  Identities=8%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CCeeEEEEcCCC-eEEEEeC-CC----cEEEEECCCCeEE--EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          389 SEVLDLSWSKNG-FLLSSSA-DK----TVRLWQVGIDRCL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~-Dg----~V~lwdl~~~~~l--~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .....|++++++ +|+.+.. .+    .+.+++.. +...  ..+........++++|.++.++++-..++.|..++..+
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            456788898888 4555553 11    23334432 2111  22222334567889995666677766788999999988


Q ss_pred             CeEEEe--cCCCCceEEEEEccCCCEEEE-EeCCCcEEEEeCCC
Q 009614          461 CQVVDY--TDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKD  501 (531)
Q Consensus       461 ~~~~~~--~~~~~~v~~v~~spdg~~l~s-gs~dg~I~iwd~~~  501 (531)
                      +....+  .........++|+|+|++|++ -...+.|..++...
T Consensus       258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            765322  222345789999999995554 45577899987653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.29  E-value=0.0026  Score=70.10  Aligned_cols=108  Identities=12%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             eEEEEcCCC-eEEEEeCC-----CcEEEEECCCCeE--EEEee--cCCceEEEEEeeCCCCEEEEEeC---CCeEEEEeC
Q 009614          392 LDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC--LRVFS--HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV  458 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~D-----g~V~lwdl~~~~~--l~~~~--h~~~V~sv~fsp~d~~~l~sgs~---Dg~I~Iwd~  458 (531)
                      ..++|+|++ .|+....|     ..|.++++.+++.  ...+.  .......+.|+| |+++|+..+.   ...|+++|+
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~  302 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL  302 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence            467899998 55555544     3588889887642  23332  344567899999 8998876653   346888999


Q ss_pred             CCC--eE--EEec-CCCCceEEEEEccCCCEEEEEe-CC--C--cEEEEeCCC
Q 009614          459 RRC--QV--VDYT-DIREIVSAVCYCPDGKGGIVGT-MT--G--NCRFYDIKD  501 (531)
Q Consensus       459 ~~~--~~--~~~~-~~~~~v~~v~~spdg~~l~sgs-~d--g--~I~iwd~~~  501 (531)
                      .++  +.  ..+. ........+.|+. |..|+..+ .+  +  .|..+++.+
T Consensus       303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            875  33  3332 2334455555544 55554443 33  2  566677764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.29  E-value=0.019  Score=55.79  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             eeEEEE---cCCC-eEEEEe-------------CCCcEEEEECC---CCeEEEEeec-------------C-CceEEEEE
Q 009614          391 VLDLSW---SKNG-FLLSSS-------------ADKTVRLWQVG---IDRCLRVFSH-------------N-NYVTSVAF  436 (531)
Q Consensus       391 I~~l~~---sp~~-~l~s~s-------------~Dg~V~lwdl~---~~~~l~~~~h-------------~-~~V~sv~f  436 (531)
                      +..|.|   .|++ ++++..             .+..|..||+.   +++.+....-             . .....|+.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            367888   5777 444332             26779999999   7877665541             1 24789999


Q ss_pred             eeCCCCEEEEEeCC-CeEEEEeCCCCeEEEec------CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 009614          437 NPVDDNYFISGSID-GKVRIWEVRRCQVVDYT------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       437 sp~d~~~l~sgs~D-g~I~Iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~  501 (531)
                      .+ +++..++++.- +.|...+........+.      ......+.|+++|+|+.|++....|.+..+|+..
T Consensus       145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            99 99999999988 88888888765444321      1122467999999999999987799999999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=0.083  Score=53.81  Aligned_cols=199  Identities=9%  Similarity=0.041  Sum_probs=113.3

Q ss_pred             cccceeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC-Cc---EEEE
Q 009614          237 RHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GT---VRVW  311 (531)
Q Consensus       237 ~~~s~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~---I~iW  311 (531)
                      ....++++| ++..|.+....+.|+.++.......        .+.........|+|+++|++|+.+... +.   ..+|
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~--------~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS--------TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE--------EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE--------EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            445689998 4555655554488888888753321        122234568899999999966665542 21   1122


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      -...+....                                                            ...+. .....
T Consensus       210 ~~~~g~~~~------------------------------------------------------------~~~l~-~~~~p  228 (430)
T 3tc9_A          210 LTRESGFKV------------------------------------------------------------ITELT-KGQNC  228 (430)
T ss_dssp             EEGGGTSCS------------------------------------------------------------EEEEE-ECSSC
T ss_pred             EeCCCceee------------------------------------------------------------eeeec-cCCCc
Confidence            111111000                                                            00000 11235


Q ss_pred             eEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCC--CeE-
Q 009614          392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRR--CQV-  463 (531)
Q Consensus       392 ~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~--~~~-  463 (531)
                      ..++++| ++ ++++-...+.|..++..++.....+.  .......|+|+| +++ ++++-...+.|..++...  ++. 
T Consensus       229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~~~  307 (430)
T 3tc9_A          229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKRLT  307 (430)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEC
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCccccccc
Confidence            6788999 66 45555567889999998776533333  224578899999 888 455556678999987653  222 


Q ss_pred             --EEecCC---------------CCceE-EEEEc--------cCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          464 --VDYTDI---------------REIVS-AVCYC--------PDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       464 --~~~~~~---------------~~~v~-~v~~s--------pdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                        ..+.+.               -.... .++..        ++|.++++=...+.|+.++ .++++..
T Consensus       308 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~  375 (430)
T 3tc9_A          308 TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTT  375 (430)
T ss_dssp             CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEE
T ss_pred             ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEE
Confidence              111111               01123 45553        3466666656677899888 4565443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.25  E-value=0.12  Score=50.35  Aligned_cols=202  Identities=5%  Similarity=-0.053  Sum_probs=117.2

Q ss_pred             cceeeeCCCC-eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcccC
Q 009614          239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       239 ~s~~fspdg~-~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      ..+.|++.+. +..+-...+.|..++........      ..+...-.....+++.+.+ +++++-...+.|.++++...
T Consensus        38 ~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~------~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           38 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC------EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE------EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            3578888544 44555567889888877542110      0122222356678888744 44455455677877776432


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      .. ..+                                                             +.........|++
T Consensus       112 ~~-~~l-------------------------------------------------------------~~~~~~~P~giav  129 (318)
T 3sov_A          112 LR-KVL-------------------------------------------------------------FWQELDQPRAIAL  129 (318)
T ss_dssp             SC-EEE-------------------------------------------------------------ECSSCSSEEEEEE
T ss_pred             cE-EEE-------------------------------------------------------------EeCCCCCccEEEE
Confidence            11 000                                                             0111234567888


Q ss_pred             cCC-CeEEEEe--CCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCC
Q 009614          397 SKN-GFLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIRE  471 (531)
Q Consensus       397 sp~-~~l~s~s--~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~-~~~~~  471 (531)
                      .|. +.|+.+.  ..+.|...++.......... .-...+.|+++|..+.++++-+..+.|..+|+.......+ .....
T Consensus       130 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~  209 (318)
T 3sov_A          130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP  209 (318)
T ss_dssp             EGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS
T ss_pred             eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC
Confidence            875 4444444  35778888876443322222 2345689999994444555556678999999875433222 22344


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ....+++. .+.++++-...+.|..++..+++....+.
T Consensus       210 ~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          210 HPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            56777775 33455555567889999998887655443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.22  E-value=0.15  Score=52.02  Aligned_cols=108  Identities=9%  Similarity=0.087  Sum_probs=68.6

Q ss_pred             eeEEEEcCCC-eEE-EEeCCCcEEEEECC--CCeE--EEEee-c---------------CCceEEEEE---------eeC
Q 009614          391 VLDLSWSKNG-FLL-SSSADKTVRLWQVG--IDRC--LRVFS-H---------------NNYVTSVAF---------NPV  439 (531)
Q Consensus       391 I~~l~~sp~~-~l~-s~s~Dg~V~lwdl~--~~~~--l~~~~-h---------------~~~V~sv~f---------sp~  439 (531)
                      -..|+++|++ .|+ +-...+.|+.++..  ++..  ...+. .               -.....|++         .+ 
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-  353 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-  353 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-
Confidence            3469999998 454 44567889998865  2321  11111 1               123577899         55 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEecCCC------------------CceEEEEEc-cCCCEEEEEeCCCcEEEEeCC
Q 009614          440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIR------------------EIVSAVCYC-PDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       440 d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~------------------~~v~~v~~s-pdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +++++++-...+.|+.++. ++.+..+.+..                  .....|++. ++|.++++=...+.|+.++++
T Consensus       354 ~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          354 EYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            7777777777889999985 56655443221                  236788888 566655555556777777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.20  E-value=0.23  Score=49.98  Aligned_cols=226  Identities=8%  Similarity=-0.030  Sum_probs=121.3

Q ss_pred             cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcccCc----cccceecCCCCC
Q 009614          255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHE----RLDGFDVQDTDP  329 (531)
Q Consensus       255 ~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~~~----~~~~~~~~~~~~  329 (531)
                      ....|+..++......        .+......+..|+|++.+..|+-+ ...+.|+.+++....    ....+......+
T Consensus        90 ~~~~I~~i~l~~~~~~--------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYT--------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             ETTEEEEECTTSCSCE--------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ccceeEEEccCCccee--------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            3467888887643321        122345678899999865555444 457888888876522    111111111122


Q ss_pred             eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE-eecCCCCeeEEEEcCCC-eEEEEe-
Q 009614          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSKNG-FLLSSS-  406 (531)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~sp~~-~l~s~s-  406 (531)
                      ..+.+.+.. ..++..+              .....+.+.+...     ..... +.........|++.|.+ .|+.+. 
T Consensus       162 ~glavD~~~-~~lY~~d--------------~~~~~I~~~~~~g-----~~~~~l~~~~~~~P~~iavdp~~g~ly~td~  221 (400)
T 3p5b_L          162 DGLAVDWIH-SNIYWTD--------------SVLGTVSVADTKG-----VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  221 (400)
T ss_dssp             EEEEEETTT-TEEEEEE--------------TTTTEEEEECTTT-----CSEEEEEECSSCCEEEEEEETTTTEEEEEEC
T ss_pred             ccEEEEecC-CceEEEE--------------CCCCeEEEEeCCC-----CceEEEEeCCCCCcceEEEecccCeEEEEeC
Confidence            222222111 1111111              1222333333321     11111 22234457899999855 444443 


Q ss_pred             C-CCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec---CCCCceEEEEEccC
Q 009614          407 A-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPD  481 (531)
Q Consensus       407 ~-Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~---~~~~~v~~v~~spd  481 (531)
                      . .+.|...++.......... .-...+.|+++|..+.++++-...+.|..+|+.......+.   ..-.....|++ ..
T Consensus       222 ~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~  300 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FE  300 (400)
T ss_dssp             SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ET
T ss_pred             CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eC
Confidence            2 4788888887554433333 23567899999844444555556789999998765433221   12334567777 34


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       482 g~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +.++++-...+.|..+|..+|+.+..+.
T Consensus       301 ~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          301 DKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            4555666667889999977776655543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.14  E-value=0.21  Score=48.34  Aligned_cols=223  Identities=9%  Similarity=-0.005  Sum_probs=118.7

Q ss_pred             CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccC---ccccc-eecCCCCCee
Q 009614          257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEH---ERLDG-FDVQDTDPSC  331 (531)
Q Consensus       257 g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~---~~~~~-~~~~~~~~~~  331 (531)
                      ..|+..++......        .+...-..+.+++|++.+..| ++-..++.|..+++...   ..... +......+..
T Consensus        10 ~~I~~i~~~~~~~~--------~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A           10 HEVRKMTLDRSEYT--------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             SSEEEEETTSCCCE--------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CeEEEEECCCcceE--------ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            45788887753321        122234567899999866555 44455788999988651   11111 1111122333


Q ss_pred             EEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE-eecCCCCeeEEEEcCCC-eEEEEeC-C
Q 009614          332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSKNG-FLLSSSA-D  408 (531)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l~~sp~~-~l~s~s~-D  408 (531)
                      +.+.+.. ..++..+              .....+.+++...     ..... +.........+++.|.+ .|+.+.. .
T Consensus        82 lavd~~~-~~ly~~d--------------~~~~~I~~~~~~g-----~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~  141 (316)
T 1ijq_A           82 LAVDWIH-SNIYWTD--------------SVLGTVSVADTKG-----VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (316)
T ss_dssp             EEEETTT-TEEEEEE--------------TTTTEEEEEETTS-----SSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             EEEeecC-CeEEEEE--------------CCCCEEEEEeCCC-----CceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence            3332211 1122111              1122333332221     11111 12233467899999855 4444443 3


Q ss_pred             -CcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec---CCCCceEEEEEccCCC
Q 009614          409 -KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPDGK  483 (531)
Q Consensus       409 -g~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~---~~~~~v~~v~~spdg~  483 (531)
                       +.|...++.......... .-.....|+++|..+.++++-+..+.|..+|+.......+.   ..-.....+++. .+.
T Consensus       142 ~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~  220 (316)
T 1ijq_A          142 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK  220 (316)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTE
T ss_pred             CCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCE
Confidence             678888886443322222 33567899999834445555556789999999754332221   223446778874 455


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          484 GGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      ++++-...+.|..++..+++.+..+
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcceEEE
Confidence            5666666788999998777765544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.12  E-value=0.022  Score=60.70  Aligned_cols=102  Identities=14%  Similarity=0.009  Sum_probs=71.8

Q ss_pred             CCCcEEEEECCCCeEEEEeecCCce---------------------------------------EEEEEeeCCCCEEEEE
Q 009614          407 ADKTVRLWQVGIDRCLRVFSHNNYV---------------------------------------TSVAFNPVDDNYFISG  447 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h~~~V---------------------------------------~sv~fsp~d~~~l~sg  447 (531)
                      .++.|+.+|..+++.+..+......                                       ..+++.+ ...+++.+
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g  258 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG  258 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence            3789999999999998877532211                                       1356777 66777777


Q ss_pred             eCC----------------CeEEEEeCCCCeEEE---ecCCC--------CceEEEEEc-cCC---CEEEEEeCCCcEEE
Q 009614          448 SID----------------GKVRIWEVRRCQVVD---YTDIR--------EIVSAVCYC-PDG---KGGIVGTMTGNCRF  496 (531)
Q Consensus       448 s~D----------------g~I~Iwd~~~~~~~~---~~~~~--------~~v~~v~~s-pdg---~~l~sgs~dg~I~i  496 (531)
                      ..+                +.|..+|..+++++-   ...|.        .++. +... .+|   ..++.++.+|.+++
T Consensus       259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~  337 (599)
T 1w6s_A          259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYT  337 (599)
T ss_dssp             CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEE
T ss_pred             CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEE
Confidence            665                389999999998872   22221        1222 2232 567   56778999999999


Q ss_pred             EeCCCCeEEEEeee
Q 009614          497 YDIKDNQLYQQNQI  510 (531)
Q Consensus       497 wd~~~~~l~~~~~~  510 (531)
                      +|..+|+++...+.
T Consensus       338 lD~~tG~~lw~~~~  351 (599)
T 1w6s_A          338 LDRTDGALVSANKL  351 (599)
T ss_dssp             EETTTCCEEEEEES
T ss_pred             EECCCCCEeecccc
Confidence            99999999987653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.09  E-value=0.017  Score=61.42  Aligned_cols=80  Identities=10%  Similarity=0.032  Sum_probs=55.4

Q ss_pred             CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc--eEEEEEccCCCE
Q 009614          407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGKG  484 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~--v~~v~~spdg~~  484 (531)
                      .++.|..||+.+++.+..+.+...+.+..+.. .+.+++.++.||.|+.||..+++++-.......  ...+.|..+|+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            45889999999999988887555554444444 567778899999999999999998842222221  223446678865


Q ss_pred             EEE
Q 009614          485 GIV  487 (531)
Q Consensus       485 l~s  487 (531)
                      ++.
T Consensus       521 yv~  523 (571)
T 2ad6_A          521 YIG  523 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.02  E-value=0.097  Score=50.34  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=65.8

Q ss_pred             CeeEEEEcCCC-eEEEEeC-CC-cEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe--
Q 009614          390 EVLDLSWSKNG-FLLSSSA-DK-TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--  462 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~-Dg-~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--  462 (531)
                      .+..|++.+++ ++++... ++ .|..+|..+++......  .......++..+ ++..+++...++.|.++|..+++  
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence            46788899988 4444333 22 46677777777544333  223345555555 55555555568899999987653  


Q ss_pred             EEEec---------CCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 009614          463 VVDYT---------DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKD  501 (531)
Q Consensus       463 ~~~~~---------~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~  501 (531)
                      +....         ..-.....|  +|+++.|+++. ..+.|..|++..
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            32111         111234555  88887665554 567899999874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.96  E-value=0.091  Score=51.04  Aligned_cols=110  Identities=8%  Similarity=0.061  Sum_probs=69.4

Q ss_pred             CeeEEEEcCCC-eEEEEeCC-CcEEEEECCCCeEEEEee-------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          390 EVLDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~D-g~V~lwdl~~~~~l~~~~-------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ...+|+..++| ..++++.- +.|...+.... .+..+.       .....+.|+++| +++.|++....|.+..+|+.+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence            47788999988 66667766 77666666544 233221       112367999999 898888887799999999885


Q ss_pred             CeE--EEec--CC---CCceEEE-EEccCCCE-EEEEeCCCcEEEEeCCC
Q 009614          461 CQV--VDYT--DI---REIVSAV-CYCPDGKG-GIVGTMTGNCRFYDIKD  501 (531)
Q Consensus       461 ~~~--~~~~--~~---~~~v~~v-~~spdg~~-l~sgs~dg~I~iwd~~~  501 (531)
                      ...  +...  +.   -.....| .--.+|+. |++....+.+.+.+...
T Consensus       216 pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          216 PYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             SSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             CcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            433  3322  21   1233443 33457877 45555566666666544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.93  E-value=0.34  Score=47.75  Aligned_cols=243  Identities=15%  Similarity=0.096  Sum_probs=116.5

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC---CCEEEEEeC-C-----Cc
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE-D-----GT  307 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~-D-----g~  307 (531)
                      ....++|.|+|.++++ ...|.|++++ ......+....   .+.........|+|+|+   +..|+.+.. .     +.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            3446899999986555 5669999998 32111111000   11122457899999998   555554433 2     56


Q ss_pred             EEEEEcccCcc------ccceec---CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          308 VRVWKVIEHER------LDGFDV---QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       308 I~iWd~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      |..|+...+..      +..+..   .......+.+.++.  .++....+...... ..-.....+.++.+++...-...
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~-~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYEREL-AQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGG-GGCTTCSSSEEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCcc-ccCCCCCceEEEEEcCCCCCCCC
Confidence            77777654311      111210   01122334443332  23222211111000 00011223455555543210000


Q ss_pred             ---------cceeEeecCCCCeeEEEEcC-CCeEEEEe-CCCcE------EEEECCCCe------------------EEE
Q 009614          379 ---------KPLHEFQGHSSEVLDLSWSK-NGFLLSSS-ADKTV------RLWQVGIDR------------------CLR  423 (531)
Q Consensus       379 ---------~~~~~~~~h~~~I~~l~~sp-~~~l~s~s-~Dg~V------~lwdl~~~~------------------~l~  423 (531)
                               .......+| .....++|+| ++.|+++. ....+      .|.-+..+.                  ++.
T Consensus       184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence                     001111222 3367889999 56444332 22221      222222221                  223


Q ss_pred             EeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe-------EEEecCCCCceEEEEEccCCCEEEEEeC
Q 009614          424 VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------VVDYTDIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       424 ~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-------~~~~~~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                      .+.+......++| . ++.++++.-..+.|...++....       ...+......+..+++.|||.++++...
T Consensus       263 ~~~~~~ap~G~~~-~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          263 FWPQGFPPGNLAF-F-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             ECTTCCCEEEEEE-E-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             ecCCCCCCcceEE-E-CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence            3333345677888 3 67777776677788888776432       1223233457899999999987766543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.88  E-value=0.049  Score=58.81  Aligned_cols=234  Identities=12%  Similarity=0.046  Sum_probs=119.1

Q ss_pred             eeeeCCCCeEEeee-cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CC-----CcEEEEEc
Q 009614          241 ATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-ED-----GTVRVWKV  313 (531)
Q Consensus       241 ~~fspdg~~lasgs-~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~D-----g~I~iWd~  313 (531)
                      +++.+++.+++.|+ .+..+.+||..+.......     .+.... .-.++...++|++++.|+ .+     ..+.+||.
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-----~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-----DMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-----CCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-----CCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            56778999999987 4568999998754332111     111111 113455667999999998 44     56899998


Q ss_pred             ccCccccc-----eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeec--
Q 009614          314 IEHERLDG-----FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG--  386 (531)
Q Consensus       314 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  386 (531)
                      .++.-...     ..........   .......++.+....+.     .+.......+..|++...... .+......  
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~---~~~~~~~iyv~Gg~~g~-----~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~  392 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQG---LYRSDNHAWLFGWKKGS-----VFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNR  392 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTG---GGTTTCSCCEEECGGGC-----EEECCSSSEEEEEECSTTCEE-EEEEECEETT
T ss_pred             CCCcceeCCCccccccccccccc---eeecCCceEEEECCCCc-----EEEecCccceeeeecCCccee-ecCCcccccc
Confidence            77653211     0000000000   00001111111111000     001111223444444321110 01111100  


Q ss_pred             ----CCCCeeEEEEcC-CC-eEEEEeCCC-----------cEEEEECCCCeEEEEe--e--cCCceEEEEEeeCCCCEEE
Q 009614          387 ----HSSEVLDLSWSK-NG-FLLSSSADK-----------TVRLWQVGIDRCLRVF--S--HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       387 ----h~~~I~~l~~sp-~~-~l~s~s~Dg-----------~V~lwdl~~~~~l~~~--~--h~~~V~sv~fsp~d~~~l~  445 (531)
                          ....-.++.+.. ++ +++.|+.++           .|.+||..+.......  .  ....-.+++..| ++++++
T Consensus       393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v  471 (656)
T 1k3i_A          393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFI  471 (656)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEE
T ss_pred             ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEE
Confidence                011123333333 45 666666432           6888898887766543  2  222224456667 889999


Q ss_pred             EEeCC-----------CeEEEEeCCCCeEEEecC---CCCceEEEEEccCCCEEEEEeC
Q 009614          446 SGSID-----------GKVRIWEVRRCQVVDYTD---IREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       446 sgs~D-----------g~I~Iwd~~~~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~  490 (531)
                      .|+.+           ..+.+||..+.+......   .........+.|||+.++.|+.
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            98864           468999998876554221   2223345667799999999985

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.87  E-value=0.76  Score=50.49  Aligned_cols=224  Identities=7%  Similarity=-0.038  Sum_probs=117.3

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccCc----cccceecCCCCCe
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHE----RLDGFDVQDTDPS  330 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~----~~~~~~~~~~~~~  330 (531)
                      ...|+..++.....        ..+......+.+|+|.+... ++++-...+.|+.+++....    ....+......+.
T Consensus       403 ~~~Ir~i~l~~~~~--------~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          403 RHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             BSSEEEECTTSCCC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccceeEeeccCCcc--------eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            34566666653221        12233456688999998554 44555566788888886431    1111111222233


Q ss_pred             eEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEEEEcCCC-eEEEEe-C
Q 009614          331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSS-A  407 (531)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~sp~~-~l~s~s-~  407 (531)
                      .+++.+... .++..+              .....+.+.+...     .....+ .........|++.|.+ +|+.+. .
T Consensus       475 GLAvD~~~~-~LY~tD--------------~~~~~I~v~~ldG-----~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g  534 (791)
T 3m0c_C          475 GLAVDWIHS-NIYWTD--------------SVLGTVSVADTKG-----VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  534 (791)
T ss_dssp             EEEEETTTT-EEEEEE--------------TTTTEEEEEETTS-----SSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             eeeeeecCC-cEEEEe--------------cCCCeEEEEeCCC-----CeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence            333322221 111111              2222333333221     112222 2234457899999974 554443 3


Q ss_pred             -CCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC---CCCceEEEEEccCC
Q 009614          408 -DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---IREIVSAVCYCPDG  482 (531)
Q Consensus       408 -Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~---~~~~v~~v~~spdg  482 (531)
                       .+.|...++........+. .-...+.|+++|..+.++++-.....|...++.......+..   .-....+|++.. +
T Consensus       535 ~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~  613 (791)
T 3m0c_C          535 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D  613 (791)
T ss_dssp             SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T
T ss_pred             CCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-C
Confidence             3678888987655544443 335789999998455555555566789999997654433221   223445666632 3


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEe
Q 009614          483 KGGIVGTMTGNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       483 ~~l~sgs~dg~I~iwd~~~~~l~~~~  508 (531)
                      .++++-...+.|...|..+|+.+..+
T Consensus       614 ~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          614 KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            34444455677888887777655444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.81  E-value=0.12  Score=50.49  Aligned_cols=108  Identities=9%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ...+..+.+.+++.++..+.+|.+++.+...++.-..+.     +...+.+|.+.| ++.+++++. +|.| .+....++
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESSTTS
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCCCc
Confidence            345677888888866666778887776533233222222     223588999988 677666654 6766 34444443


Q ss_pred             EEE-ec---CCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          463 VVD-YT---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       463 ~~~-~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      .-. ..   .....++.+.|.+++. +++++.+|.|.-++-
T Consensus       281 tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          281 TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            222 11   2345678898876554 666677897776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.70  E-value=0.0087  Score=65.24  Aligned_cols=118  Identities=4%  Similarity=-0.079  Sum_probs=69.7

Q ss_pred             eeEEEEcCCC-eEEEEe-C-CCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe
Q 009614          391 VLDLSWSKNG-FLLSSS-A-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY  466 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s-~-Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~  466 (531)
                      ...|++.|.+ +|+.+. . .+.|..+++.......... .-...+.|+|+|..+.++++-+..+.|.++++.......+
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~  577 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  577 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE
Confidence            3566777754 333332 2 2667777765433222222 2234678999994566666667778999999976433322


Q ss_pred             cC---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          467 TD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       467 ~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ..   .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus       578 ~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          578 LEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            21   1223345555443 444555567889999998888776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.66  E-value=0.047  Score=55.70  Aligned_cols=112  Identities=10%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             CCeeEEEEcCCCeEEEEeCC----Cc-EEEEECCCCeE-EEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          389 SEVLDLSWSKNGFLLSSSAD----KT-VRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~D----g~-V~lwdl~~~~~-l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      .....|++++++.|+.+...    .. +...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++.
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~  261 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT  261 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence            34678888888833333321    11 22233221110 01222233456788998556666666677899999998776


Q ss_pred             EE-Ee--cCCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 009614          463 VV-DY--TDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK  500 (531)
Q Consensus       463 ~~-~~--~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~  500 (531)
                      .. .+  .........++|+|+|++|+++ ...+.|+.++..
T Consensus       262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            62 22  2222334579999999955554 456789998765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.60  E-value=0.41  Score=47.17  Aligned_cols=108  Identities=14%  Similarity=0.198  Sum_probs=66.5

Q ss_pred             CeeEEEEcCCCeEEEEeC------------------CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEE-eCC
Q 009614          390 EVLDLSWSKNGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SID  450 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~------------------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sg-s~D  450 (531)
                      ..+++.+.++|.++.+..                  .+.|..+|.  ++.......-...+.|+|+| |+++|+.+ +..
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~  242 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISP-DGKYVYIAELLA  242 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECT-TSSEEEEEEGGG
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECC-CCCEEEEEeCCC
Confidence            567888888884433332                  133444443  43333333445678999999 88766555 467


Q ss_pred             CeEEEEeCCC-CeEE--EecCCCCceEEEEEcc-CCCEEEEEeCC-CcEEEEeCC
Q 009614          451 GKVRIWEVRR-CQVV--DYTDIREIVSAVCYCP-DGKGGIVGTMT-GNCRFYDIK  500 (531)
Q Consensus       451 g~I~Iwd~~~-~~~~--~~~~~~~~v~~v~~sp-dg~~l~sgs~d-g~I~iwd~~  500 (531)
                      +.|..|++.. +++.  .........-.+++.+ +|++.+++..+ +.|..|+..
T Consensus       243 ~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          243 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            8999999863 3332  1223356678899999 59987766644 345445544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.52  E-value=0.44  Score=46.18  Aligned_cols=112  Identities=5%  Similarity=-0.057  Sum_probs=72.7

Q ss_pred             CeeEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe--CCCeEEEEeCCCCeEE
Q 009614          390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVV  464 (531)
Q Consensus       390 ~I~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs--~Dg~I~Iwd~~~~~~~  464 (531)
                      ....+++.+. + ++++-...+.|.++++........+ ........|+++| .+.+|+...  ..+.|...++......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence            3456777764 4 5555566788999998765433333 2445678999999 444444443  3578998888754332


Q ss_pred             Ee-cCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 009614          465 DY-TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDN  502 (531)
Q Consensus       465 ~~-~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~  502 (531)
                      .+ ...-.....|+++|++..|+.+. ..+.|..+|+...
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            22 22334678999999776666554 4677999998743

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.44  E-value=0.08  Score=54.68  Aligned_cols=111  Identities=8%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             CeeEEEE-------cCCC-eEEEEeCCC-------cEEEEECCC-CeEE-----EEeecCCceEEEEEeeCCCCEEEEEe
Q 009614          390 EVLDLSW-------SKNG-FLLSSSADK-------TVRLWQVGI-DRCL-----RVFSHNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       390 ~I~~l~~-------sp~~-~l~s~s~Dg-------~V~lwdl~~-~~~l-----~~~~h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      ....|+|       ++++ +|+.+...+       .|.+++... +...     ..+..-.....++++|.++.++++-.
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~  266 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY  266 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence            4677888       8888 566665443       256665333 1221     12221123457788996666777777


Q ss_pred             CCCeEEEEeCC-------CCeE--------------EEecCCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 009614          449 IDGKVRIWEVR-------RCQV--------------VDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK  500 (531)
Q Consensus       449 ~Dg~I~Iwd~~-------~~~~--------------~~~~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~  500 (531)
                      .++.|..+|+.       ++..              +.........+.|+|+|+|++|+++ +....|+.++..
T Consensus       267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            88899999987       4443              1122334456899999999965555 456778886543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.44  E-value=1  Score=46.38  Aligned_cols=116  Identities=11%  Similarity=0.063  Sum_probs=72.0

Q ss_pred             CCeeEEEEcCCC-e-EEEEeCCCcEEEEECC--CCeEE--EEee-c---C------------CceE-EEEEe-------e
Q 009614          389 SEVLDLSWSKNG-F-LLSSSADKTVRLWQVG--IDRCL--RVFS-H---N------------NYVT-SVAFN-------P  438 (531)
Q Consensus       389 ~~I~~l~~sp~~-~-l~s~s~Dg~V~lwdl~--~~~~l--~~~~-h---~------------~~V~-sv~fs-------p  438 (531)
                      .....|+|+|++ . +++-+....|+.++..  ++...  .++. .   .            .... .++..       +
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~  389 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE  389 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence            456799999999 4 4454567788886553  33221  2221 1   0            1234 45554       3


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC--------------C----------CceEEEEEccC-CCEEEEEeCCCc
Q 009614          439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--------------R----------EIVSAVCYCPD-GKGGIVGTMTGN  493 (531)
Q Consensus       439 ~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~--------------~----------~~v~~v~~spd-g~~l~sgs~dg~  493 (531)
                       ++.++++-.....|+.++ .++.+..+.+.              .          .....|++.++ |.++++=.....
T Consensus       390 -~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r  467 (496)
T 3kya_A          390 -EYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT  467 (496)
T ss_dssp             -CEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred             -CCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE
Confidence             677788877889999999 45665544322              1          23678999997 666666666778


Q ss_pred             EEEEeCCCCeEEE
Q 009614          494 CRFYDIKDNQLYQ  506 (531)
Q Consensus       494 I~iwd~~~~~l~~  506 (531)
                      |+.+++.......
T Consensus       468 Irki~~~~~~~~~  480 (496)
T 3kya_A          468 IRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEECCCC---
T ss_pred             EEEEECCCCcccc
Confidence            9999887665543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.14  E-value=1.8  Score=46.17  Aligned_cols=231  Identities=6%  Similarity=-0.079  Sum_probs=124.9

Q ss_pred             eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceecCCC
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (531)
                      +|+.+ ..+.|+..++........  .   .+ ..-..+..|+|++.+..| ++-..++.|..+++........+.....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~--~---~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVA--I---PL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEE--C---CC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceE--E---Ec-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            34333 557788888875332110  0   01 123468899999865555 4555678898888865432222222222


Q ss_pred             CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEEEEcCC-CeEEEE
Q 009614          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKN-GFLLSS  405 (531)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~sp~-~~l~s~  405 (531)
                      .+..+++.+... .++..+.              ....+.+.+...     .....+ .........|++.|. |.|+.+
T Consensus        81 ~P~GlAvD~~~~-~LY~tD~--------------~~~~I~v~~~dG-----~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           81 YPEGMAVDWLGK-NLYWADT--------------GTNRIEVSKLDG-----QHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             CCCEEEEETTTT-EEEEEET--------------TTTEEEEEETTS-----TTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             CcceEEEEeCCC-EEEEEEC--------------CCCEEEEEecCC-----CcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence            233333332221 1111111              112222222211     111111 123345689999985 555544


Q ss_pred             e--CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCC
Q 009614          406 S--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK  483 (531)
Q Consensus       406 s--~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~  483 (531)
                      .  ..+.|...++...........-.....|++++..+.++++-...+.|..+|+.......+...-.....+++.. +.
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~  219 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DY  219 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TE
T ss_pred             CCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CE
Confidence            4  25678888887655444444556788999999334455555567899999987643322223333456777754 44


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          484 GGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       484 ~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ++++-...+.|...|..+++....
T Consensus       220 ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          220 IYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             EEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEEecCCCCEEEEEECCCCCceEE
Confidence            445555578899999877764433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.00  E-value=1.2  Score=42.88  Aligned_cols=114  Identities=11%  Similarity=0.029  Sum_probs=74.3

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCC----CeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI----DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       389 ~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~----~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                      ..+..++|++.+  .+++-...+.|..+++..    ......+. .-.....|++++..++++++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            456789999854  555556678999999876    22222232 22456789998745556666677889999999865


Q ss_pred             eEEEec-CCCCceEEEEEccCCCEEEEEeCC--CcEEEEeCCCC
Q 009614          462 QVVDYT-DIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIKDN  502 (531)
Q Consensus       462 ~~~~~~-~~~~~v~~v~~spdg~~l~sgs~d--g~I~iwd~~~~  502 (531)
                      ....+. ..-.....+++.|.+..|+.+...  +.|..+++...
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~  153 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence            443322 234567899999976666555543  67888887643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.78  E-value=1.5  Score=43.54  Aligned_cols=198  Identities=7%  Similarity=-0.093  Sum_probs=104.6

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCE-EEEEeCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY-LASGGEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~-Lasgs~Dg~I~iWd~~~  315 (531)
                      ...++|++.+..| ++-...+.|..++.......       ..+.........|++.+.+.. +++-...+.|.+.++..
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            3457888755544 45556788999988754321       112222234567888875544 45555567788887754


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l  394 (531)
                      ......+......+..+.+.+.. ..++..+...             ...+..++...     .....+ .......+.|
T Consensus       191 ~~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~-------------~~~I~r~~~dG-----~~~~~~~~~~~~~PnGl  251 (386)
T 3v65_B          191 AHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGN-------------TPRIEASSMDG-----SGRRIIADTHLFWPNGL  251 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTT-TEEEEEECSS-------------SCEEEEEETTS-----CSCEEEECSSCSCEEEE
T ss_pred             CceEEeecCCCCCCcEEEEEcCC-CeEEEeccCC-------------CCEEEEEeCCC-----CCcEEEEECCCCCeeeE
Confidence            33221121111223333332222 1122111111             12232222211     111111 1223457899


Q ss_pred             EEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE
Q 009614          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV  463 (531)
Q Consensus       395 ~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~  463 (531)
                      +++|++  ++++-+..+.|..+|+........+. .......|++ . .+.++++....+.|..++..+++.
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcc
Confidence            999765  44555667889999987544333332 3345677888 3 566777777788999998665543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.77  E-value=0.75  Score=45.27  Aligned_cols=94  Identities=14%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             CCcEEEEECCCC-eE---EEEeec--CCceEEEEEeeCCCCEEEEEeC-----------------CCeEEEEeCCCCeEE
Q 009614          408 DKTVRLWQVGID-RC---LRVFSH--NNYVTSVAFNPVDDNYFISGSI-----------------DGKVRIWEVRRCQVV  464 (531)
Q Consensus       408 Dg~V~lwdl~~~-~~---l~~~~h--~~~V~sv~fsp~d~~~l~sgs~-----------------Dg~I~Iwd~~~~~~~  464 (531)
                      +.+|.+|++... ..   +..+.+  -...+.+.+.+ ++.++++...                 .|.|.-+|..  ++.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence            466778776543 22   223332  24578999999 8887777541                 2445555553  322


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCC-CeE
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKD-NQL  504 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~-~~l  504 (531)
                      .....-...+.++|+||++.|+++. ..+.|+.|++.. +++
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l  256 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  256 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence            2222334568899999998877765 578899999863 444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.71  E-value=1.2  Score=47.36  Aligned_cols=199  Identities=7%  Similarity=-0.040  Sum_probs=110.5

Q ss_pred             cceeeeCCCCeEEee-ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcccC
Q 009614          239 GSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEH  316 (531)
Q Consensus       239 ~s~~fspdg~~lasg-s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~  316 (531)
                      ..++|++.+..|... ...++|..++.......      ...+...-.....|++.+.+..|+ +-...+.|.+.++...
T Consensus        43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~------~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----C------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEccCCCce------EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            357889866665544 44678888887643210      011222235688999998655554 4455678888876432


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      .. ..+                                                             +.........|++
T Consensus       117 ~~-~~l-------------------------------------------------------------~~~~l~~P~~Iav  134 (619)
T 3s94_A          117 LR-KVL-------------------------------------------------------------FWQELDQPRAIAL  134 (619)
T ss_dssp             SC-EEE-------------------------------------------------------------ECSSCSCCCCEEE
T ss_pred             CE-EEE-------------------------------------------------------------EeCCCCCCceEEE
Confidence            21 000                                                             0011223557788


Q ss_pred             cCC-CeEEEEeC--CCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecC-CCC
Q 009614          397 SKN-GFLLSSSA--DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IRE  471 (531)
Q Consensus       397 sp~-~~l~s~s~--Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~-~~~  471 (531)
                      .|. |.|+.+..  .+.|...++.......... .-...+.|+++|..++++++-...+.|...|+.......+.. ...
T Consensus       135 dp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~  214 (619)
T 3s94_A          135 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP  214 (619)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred             ecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC
Confidence            875 44444432  3566666665443333332 335678999999445555555667789999997654432211 122


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      ...+|++..+ ..+++-...+.|...|..+++...
T Consensus       215 ~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          215 HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             -CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            2346677655 344444456789999988776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.51  E-value=0.34  Score=48.56  Aligned_cols=128  Identities=16%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             cCCC-eEEEEeCCCcEEEEECCCCeEEEEeecC-----CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe--------
Q 009614          397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------  462 (531)
Q Consensus       397 sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~-----~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~--------  462 (531)
                      ..+| .++.+- ++.||.-++......+.+..+     ..|..+..+| +|++||..+. ..|.|-.+..+.        
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCccccc
Confidence            3445 444443 478888888755455555433     2578899999 9999998864 589998887321        


Q ss_pred             -----E--EEecC----CCCceEEEEEccC---CCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccc-----cCCCcee
Q 009614          463 -----V--VDYTD----IREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK-----KLPGKRI  523 (531)
Q Consensus       463 -----~--~~~~~----~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~k-----k~~~~~I  523 (531)
                           +  ..+..    ....|..+.|||-   +..|++-..|+.|++||+....-.-.   .+..+.     -.....|
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceE
Confidence                 1  11111    2567999999994   56899999999999999986321111   111111     1122678


Q ss_pred             eeEEEee
Q 009614          524 TGFQVVK  530 (531)
Q Consensus       524 t~l~f~p  530 (531)
                      ++++|.+
T Consensus       183 ~S~~Fg~  189 (452)
T 3pbp_A          183 TDLEFSK  189 (452)
T ss_dssp             EEEEECT
T ss_pred             EEEEEcC
Confidence            8888864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.41  E-value=2.6  Score=42.45  Aligned_cols=223  Identities=14%  Similarity=0.209  Sum_probs=130.3

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (531)
                      ...|.|-|+........     +.+.+ .    +.-.+|..+.||-=. ..++.|+|+.+...++.+...+.   .++|.
T Consensus        47 ~~~vvIiDl~~~~~~~r-----rpi~A-d----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWk  112 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIR-----RPISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWK  112 (494)
T ss_dssp             CCEEEEEETTSTTSCEE-----EECCC-S----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEE
T ss_pred             CCeEEEEECCCCCccee-----ccccc-c----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEE
Confidence            34788888886543311     11111 1    223466666555544 67899999999988888776554   33443


Q ss_pred             ecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC----CCeeEEEEcCCC--eEEEEe---
Q 009614          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS----SEVLDLSWSKNG--FLLSSS---  406 (531)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~I~~l~~sp~~--~l~s~s---  406 (531)
                      +-....+..+                .+..++.|+...   ...|++.+..|.    ..|.....+++.  .+++|=   
T Consensus       113 Wis~~~l~lV----------------T~taVyHWsi~~---~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  173 (494)
T 1bpo_A          113 WISLNTVALV----------------TDNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (494)
T ss_dssp             EEETTEEEEE----------------CSSEEEEEESSS---SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred             ecCCCeEEEE----------------cCCeeEEecccC---CCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence            3332222211                233456665433   235666666653    356666677777  343332   


Q ss_pred             ---CCCcEEEEECCCCeEEEEeecCCceEEEEEe--eCCCCEEEEEeC---CCeEEEEeCCCC---------eEEEec--
Q 009614          407 ---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN--PVDDNYFISGSI---DGKVRIWEVRRC---------QVVDYT--  467 (531)
Q Consensus       407 ---~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fs--p~d~~~l~sgs~---Dg~I~Iwd~~~~---------~~~~~~--  467 (531)
                         ..|.+.+|..+.+.....-+|...-..+.+.  +....+|+.+..   .++++|.++...         +.+...  
T Consensus       174 ~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp  253 (494)
T 1bpo_A          174 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (494)
T ss_dssp             TTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             CCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence               2467889988776554443444333322221  101123333333   278999998542         222211  


Q ss_pred             --CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          468 --DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       468 --~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                        ...+-..++..++.-..+..-+.-|.|++||+.++.++...++.
T Consensus       254 pe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  299 (494)
T ss_dssp             TTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             cccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence              12344677888988889999999999999999999999877653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.33  E-value=2.5  Score=46.43  Aligned_cols=117  Identities=8%  Similarity=-0.040  Sum_probs=79.6

Q ss_pred             CCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC-CeEEEEeCCCCe
Q 009614          387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQ  462 (531)
Q Consensus       387 h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D-g~I~Iwd~~~~~  462 (531)
                      .......|++.+.+  ++++-...+.|.+.++........+. .-.....|+++|..+.++++-... +.|.+.++....
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            34556788888765  55566678899999998665544443 345689999999445444544333 789999998765


Q ss_pred             EEEecC-CCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCe
Q 009614          463 VVDYTD-IREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQ  503 (531)
Q Consensus       463 ~~~~~~-~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~  503 (531)
                      ...+.. .-.....|++.+.+..|+.+. ..+.|..+++....
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            544333 335788999998776666654 45678888886543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.29  E-value=0.89  Score=44.48  Aligned_cols=92  Identities=9%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             CCcEEEEECC--CCeEEEEeec-------C-CceEEEEE--eeCCCC-EEEEEeCCCeEEEEeCC-------CCeEEEec
Q 009614          408 DKTVRLWQVG--IDRCLRVFSH-------N-NYVTSVAF--NPVDDN-YFISGSIDGKVRIWEVR-------RCQVVDYT  467 (531)
Q Consensus       408 Dg~V~lwdl~--~~~~l~~~~h-------~-~~V~sv~f--sp~d~~-~l~sgs~Dg~I~Iwd~~-------~~~~~~~~  467 (531)
                      +.+|++|++.  ++. +..+..       . ..+..+|+  +|..+. ++++...+|.+..|++.       +.+++...
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999773  343 544421       1 55667887  673444 68888889999999983       23455555


Q ss_pred             CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .....+-.+...+....|+++-.+.-|..|+..
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            556788899999988999999998778777865

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.11  E-value=0.38  Score=48.21  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCe------------EEEEee-------cCCceEEEEEeeC--CCCEEEEEe
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDR------------CLRVFS-------HNNYVTSVAFNPV--DDNYFISGS  448 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~------------~l~~~~-------h~~~V~sv~fsp~--d~~~l~sgs  448 (531)
                      .|..+..+|+|.+++-..+..|.|-.+..+.            ..+.+.       ...+|..+.|||.  .+..|++-.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            5778999999955555567789999887321            123333       2467999999994  345899999


Q ss_pred             CCCeEEEEeCCCCe--EEEe---------cCCCCceEEEEEccCCCEEEEEe--CCCcEEEE
Q 009614          449 IDGKVRIWEVRRCQ--VVDY---------TDIREIVSAVCYCPDGKGGIVGT--MTGNCRFY  497 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~--~~~~---------~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iw  497 (531)
                      .|+.||+||+....  +..+         ......|.++||.++|-.|.+.+  ..|.|+-.
T Consensus       147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999998621  1111         12225688999999887777755  66666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.04  E-value=2.7  Score=40.58  Aligned_cols=111  Identities=13%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEE-EEEC--CCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVR-LWQV--GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~-lwdl--~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ...+..+.+.+++.++..+.++.+. -+|-  .+-+.+ .......+..+.+.| ++.+++ ++.+|.+++.+...++..
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCCCCee
Confidence            3457788888888444444455443 3442  122222 123556788999988 776554 456788887753333332


Q ss_pred             E-ec----CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          465 D-YT----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       465 ~-~~----~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      . ..    .....+.++.+.+++..++++. +|.| ++....|+
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc
Confidence            2 11    1223588999999887666655 6766 45555554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.00  E-value=2.9  Score=40.80  Aligned_cols=196  Identities=7%  Similarity=-0.086  Sum_probs=104.9

Q ss_pred             cceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcccC
Q 009614          239 GSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       239 ~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~  316 (531)
                      ..++|++.+..| ++-...+.|..++.......       ..+.........|++.+.+. ++++-...+.|.+.++...
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVE-------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCce-------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            457888765555 44456788998888754321       11222223457889987544 4455556788999887644


Q ss_pred             ccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEEE
Q 009614          317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLS  395 (531)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~  395 (531)
                      .....+......+..+.+.+.. ..++..+...             ...+..++...     .....+ .......+.|+
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~-g~ly~td~~~-------------~~~I~r~~~dG-----~~~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPME-GTIYWTDWGN-------------TPRIEASSMDG-----SGRRIIADTHLFWPNGLT  209 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTT-TEEEEEECSS-------------SCEEEEEETTS-----CSCEESCCSSCSCEEEEE
T ss_pred             ceEEEEeCCCCCcceEEEecCc-CeEEEeccCC-------------CCEEEEEeCCC-----CCcEEEEECCCCCcceEE
Confidence            3222121112223333333222 1222222111             12232222211     111111 12234578999


Q ss_pred             EcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       396 ~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ++|++  +.++-...+.|..+|+........+. .......|++ . .+.++++-...+.|..++..+++
T Consensus       210 ~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F-EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-E-CCEEEEecCCCCeEEEEEccCCC
Confidence            99865  44555567889999987544333332 3345677887 3 56677777778889888865554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.94  E-value=3.1  Score=40.77  Aligned_cols=244  Identities=12%  Similarity=0.039  Sum_probs=116.7

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC---CCEEEEEeC----C----
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE----D----  305 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~----D----  305 (531)
                      ....++|.|+|.++++ ...|+|++++.. ....+..+.   .+.........|+|+|+   +..|+.+..    +    
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~~-G~~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISPS-GKKLVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECSS-CEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeCC-CceEeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            3446899999985555 556999999733 221111110   11122356889999997   445544432    3    


Q ss_pred             CcEEEEEcccCc-------c-ccceecC-CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          306 GTVRVWKVIEHE-------R-LDGFDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       306 g~I~iWd~~~~~-------~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      ..|..|+.....       . +..+... ......+.+.++.  .++....+...... ..-.....+.++.+++...-.
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~-~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRL-AQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGG-GTCTTCCSSEEEEECTTSCCC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCcc-ccCCCCCCeEEEEEcCCCCCC
Confidence            556667665431       0 0111110 1112233333322  22222111110000 000112234455554432100


Q ss_pred             cCcc----eeEeecCCCCeeEEEEcC-CCeEEEEeCCC----cEEEEECCC----------------CeEEEEe-ecCCc
Q 009614          377 LEKP----LHEFQGHSSEVLDLSWSK-NGFLLSSSADK----TVRLWQVGI----------------DRCLRVF-SHNNY  430 (531)
Q Consensus       377 ~~~~----~~~~~~h~~~I~~l~~sp-~~~l~s~s~Dg----~V~lwdl~~----------------~~~l~~~-~h~~~  430 (531)
                      ...+    .....+| .....|+|+| ++.|+++....    .|.+..-..                ..++..+ .....
T Consensus       182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence            0000    1111233 3456899999 56554443321    133322110                0122333 22345


Q ss_pred             eEEEEEee------CCCCEEEEEeCCCeEEEEeCCCC-eEE---Eec-CCCCceEEEEEccCCCEEEEEe
Q 009614          431 VTSVAFNP------VDDNYFISGSIDGKVRIWEVRRC-QVV---DYT-DIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       431 V~sv~fsp------~d~~~l~sgs~Dg~I~Iwd~~~~-~~~---~~~-~~~~~v~~v~~spdg~~l~sgs  489 (531)
                      ...++|..      .++.++++.-..+.|...++... +..   .+. .....+..+++.|||.++++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            77888841      26777777777788988888753 332   222 2245789999999997666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.85  E-value=2.7  Score=42.78  Aligned_cols=31  Identities=10%  Similarity=0.007  Sum_probs=22.1

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      -...+.|+|.|+|+++++--..+.|++++..
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~   56 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPE   56 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence            3467899999999977765444467777643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.74  E-value=2.9  Score=39.45  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCC---CceEEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAVCY  478 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~~~~~---~~v~~v~~  478 (531)
                      ..+.+||+.+.+....-...  ..-.+++..  ++.+++.|+.+     ..|.+||+.+.+-.......   .....+. 
T Consensus       175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-  251 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-  251 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             ceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-
Confidence            45888998887665443211  111122222  56777887764     46899999988765433221   1122222 


Q ss_pred             ccCCCEEEEEeCC-----CcEEEEeCCCCeEEEE
Q 009614          479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       479 spdg~~l~sgs~d-----g~I~iwd~~~~~l~~~  507 (531)
                       -++++++.|+.+     ..+.+||+.+++-...
T Consensus       252 -~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          252 -LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             -ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             -ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence             367788888766     3588999998876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.73  E-value=0.39  Score=43.66  Aligned_cols=96  Identities=9%  Similarity=-0.029  Sum_probs=56.9

Q ss_pred             eeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEE------Eee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR------VFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       391 I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~------~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ...+.|.|+|.|+.. .||.|.-++-.+.....      .+.  -=..+..|.|.| ++.+.++.  |+.++-+...+..
T Consensus        90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~  165 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN  165 (236)
T ss_dssp             CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred             ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence            467889999966665 56988877754321111      111  114579999999 88877776  7876544433221


Q ss_pred             EEE------e-c-CCCCceEEEEEccCCCEEEEEeCCC
Q 009614          463 VVD------Y-T-DIREIVSAVCYCPDGKGGIVGTMTG  492 (531)
Q Consensus       463 ~~~------~-~-~~~~~v~~v~~spdg~~l~sgs~dg  492 (531)
                      ...      . . ..-.....+.|.|+|.+.++.  +|
T Consensus       166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g  201 (236)
T 1tl2_A          166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG  201 (236)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             CcccccccceeccCCcceEEEEEECCCCcEEEEe--CC
Confidence            111      1 1 222234557788888766666  66

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.29  E-value=0.17  Score=54.91  Aligned_cols=111  Identities=9%  Similarity=-0.010  Sum_probs=67.3

Q ss_pred             eEEEEcCC-C-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCC-CeEEEEeCCCCeEEEe-
Q 009614          392 LDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVDY-  466 (531)
Q Consensus       392 ~~l~~sp~-~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~D-g~I~Iwd~~~~~~~~~-  466 (531)
                      ..|++.+. + ++++-...+.|.++++........+. .......|+++|..+.++++-... +.|.++++.......+ 
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~  535 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  535 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence            45666643 3 44454566788899887655444433 234567889999444444443333 6888888765432222 


Q ss_pred             cCCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCCCC
Q 009614          467 TDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDN  502 (531)
Q Consensus       467 ~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~~~  502 (531)
                      ...-.....|+|+|++..|+.+ ...+.|..+++...
T Consensus       536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            1223456789999976555444 45678999998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.20  E-value=5  Score=39.97  Aligned_cols=203  Identities=9%  Similarity=-0.056  Sum_probs=106.1

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~  315 (531)
                      ...++|++.+..| ++-...+.|+.++.......   ......+.........|++.+. +++.++-...+.|.+.++..
T Consensus       114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             ceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            4457899865555 44455688888887642210   0011122223456789999884 54555555678898888765


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l  394 (531)
                      ......+......+..+.+.+.. ..++..+...             ...+...+..     +.....+ .........|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~-------------~~~I~~~~~d-----G~~~~~~~~~~l~~P~gl  251 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGT-------------PAKIKKGGLN-----GVDIYSLVTENIQWPNGI  251 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTT-TEEEEEECSS-------------SCCEEEEETT-----SCSCEEEECSSCSCEEEE
T ss_pred             CceEEEEeCCCCCcceEEEeccc-CeEEEEeCCC-------------CCEEEEEeCC-----CCccEEEEECCCCceEEE
Confidence            43322222222223333333222 1122222111             1122222211     1111111 2233567899


Q ss_pred             EEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       395 ~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      ++++.+ .| ++-...+.|..+|+..........   .-.....|++.  .+.++++-...+.|..+|..+++.+
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          252 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCce
Confidence            999866 44 444567889999987654433332   22445677773  4566777777788999997776543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.18  E-value=5.8  Score=42.14  Aligned_cols=115  Identities=6%  Similarity=-0.055  Sum_probs=74.6

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCCeEE
Q 009614          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV  464 (531)
Q Consensus       389 ~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~~~~  464 (531)
                      .....|++.+.+  ++++-...+.|.+.++........+ ..-.....|+++|..+.++++-. ..+.|...++......
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            356788888844  5555567789999999765443333 23455778999994454555532 2467777777654333


Q ss_pred             Ee-cCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCe
Q 009614          465 DY-TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQ  503 (531)
Q Consensus       465 ~~-~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~  503 (531)
                      .+ ...-...+.|++.+++..|+.+. ..+.|..+|+....
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~  204 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  204 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence            22 23345678999999766665554 45678888887543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.17  E-value=1.1  Score=44.19  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=20.7

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      ...+.|+|.|+|++++ +..+|.|++++
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence            4578999999997554 55668888886

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.08  E-value=11  Score=43.34  Aligned_cols=118  Identities=10%  Similarity=0.124  Sum_probs=76.9

Q ss_pred             CeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEE--EeecCCceEEEEEeeCC-----CCEEEEEeC-CCeEEEEeCCCC
Q 009614          390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVD-----DNYFISGSI-DGKVRIWEVRRC  461 (531)
Q Consensus       390 ~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~--~~~h~~~V~sv~fsp~d-----~~~l~sgs~-Dg~I~Iwd~~~~  461 (531)
                      .|...+.+.. +++.++ .+.+.++.+..++...  .......|.|+++.|..     ..+++.|.. |++|+|+++.+.
T Consensus       515 ~I~~As~n~~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          515 NISVASCNSS-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCCEEEECSS-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEEeCCC-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            4665555433 444444 5778888877654322  22356789999998732     479999997 999999999987


Q ss_pred             eEEEecCC--CCceEEEEEcc--CCCEEEEEeCCCcEEEEe--CCCCeEEEEee
Q 009614          462 QVVDYTDI--REIVSAVCYCP--DGKGGIVGTMTGNCRFYD--IKDNQLYQQNQ  509 (531)
Q Consensus       462 ~~~~~~~~--~~~v~~v~~sp--dg~~l~sgs~dg~I~iwd--~~~~~l~~~~~  509 (531)
                      +.+.....  ...+.++++..  ...+|.+|-.||.+.-+.  ..+|++.....
T Consensus       593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~  646 (1158)
T 3ei3_A          593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK  646 (1158)
T ss_dssp             CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEE
T ss_pred             CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccccee
Confidence            76643322  23455555442  335788999999875554  45677765543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.78  E-value=2.7  Score=41.12  Aligned_cols=37  Identities=14%  Similarity=0.045  Sum_probs=27.0

Q ss_pred             EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      +...-..-+.|+|.|||++|++--..|.|++++...+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence            3334456789999999997777655888888875443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.50  E-value=6  Score=38.58  Aligned_cols=64  Identities=22%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             eecCCceEEEEEeeC------CCCEEEEEeCCCeEEEEeCCCCeEEE---ec-CCCCceEEEEEccCCCEEEEE
Q 009614          425 FSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRCQVVD---YT-DIREIVSAVCYCPDGKGGIVG  488 (531)
Q Consensus       425 ~~h~~~V~sv~fsp~------d~~~l~sgs~Dg~I~Iwd~~~~~~~~---~~-~~~~~v~~v~~spdg~~l~sg  488 (531)
                      +.+...+..+.|.+.      ++.+|++.-..+.|...++..++.+.   +. .....+..+++.|||.++++.
T Consensus       267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            334456778888641      46777777778888888887765442   22 334578999999999866543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.21  E-value=5.7  Score=37.45  Aligned_cols=96  Identities=8%  Similarity=0.165  Sum_probs=57.8

Q ss_pred             CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCC---CceEEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAVCY  478 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~~~~~---~~v~~v~~  478 (531)
                      ..+.+||+.+.+....-...  ..-.+++..  ++.+++.|+.+     ..+.+||+.+.+-.......   .....+.+
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence            45888999887655443211  111222222  56777777654     36899999987655432221   12223333


Q ss_pred             ccCCCEEEEEeCC-----CcEEEEeCCCCeEEEEe
Q 009614          479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       479 spdg~~l~sgs~d-----g~I~iwd~~~~~l~~~~  508 (531)
                        ++++++.|+.+     ..+.+||+.+++-....
T Consensus       247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  279 (306)
T 3ii7_A          247 --GSIVYVLAGFQGVGRLGHILEYNTETDKWVANS  279 (306)
T ss_dssp             --TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred             --CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence              77788888854     46899999988765543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.98  E-value=1.9  Score=42.29  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      ...+.|+|.|+|+.|+.+...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            45789999999983444556788888874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.98  E-value=11  Score=40.79  Aligned_cols=111  Identities=11%  Similarity=0.094  Sum_probs=71.5

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe-e-----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe
Q 009614          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-S-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~-~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~  462 (531)
                      ..|.++...+++.|..++..| |..++..+++..... .     ....|.++...+ ++..|..|+. +-+..+|..+++
T Consensus       146 ~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~  222 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQ  222 (758)
T ss_dssp             SCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTE
T ss_pred             CeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCe
Confidence            468888888788666666554 778888776543221 1     123488888876 5665555553 468889988876


Q ss_pred             EEEecC-CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          463 VVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       463 ~~~~~~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      ...... ....|.++...++|.+. +|+.+ -+.+|+..+++.
T Consensus       223 ~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          223 IKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             EEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCC
T ss_pred             EEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcE
Confidence            543221 23457888888787654 45544 488888877654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.95  E-value=0.088  Score=47.92  Aligned_cols=101  Identities=11%  Similarity=0.021  Sum_probs=62.9

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCc--------eEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~--------V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      ..+.+|+++|+|.|... .+|.+.-.+..+.....-+.....        -.++.|.| ++.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            36779999998866655 677666555544221111111112        36889999 8887777  569998888644


Q ss_pred             CeEEEe--------cCCCCceEEEEEccCCCEEEEEeCCCcEE
Q 009614          461 CQVVDY--------TDIREIVSAVCYCPDGKGGIVGTMTGNCR  495 (531)
Q Consensus       461 ~~~~~~--------~~~~~~v~~v~~spdg~~l~sgs~dg~I~  495 (531)
                      ...-.+        ..-=..+..|.+.|+|.+.++.  ||.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            211111        0011357999999999877666  77754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.70  E-value=0.21  Score=48.87  Aligned_cols=106  Identities=8%  Similarity=-0.051  Sum_probs=63.0

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecCCce--------EEEEEe---e-CCCCEEEEEeCCCeEEEEeCCCCeEE--
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV--------TSVAFN---P-VDDNYFISGSIDGKVRIWEVRRCQVV--  464 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V--------~sv~fs---p-~d~~~l~sgs~Dg~I~Iwd~~~~~~~--  464 (531)
                      ++.+++|+.++.+...|+.+|+.+..+....+.        .|....   . ..+..++.+..+..|.+.+ ++++.-  
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~  189 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNV  189 (339)
T ss_dssp             CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSCCCCC
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEE
Confidence            448999999999999999999999999743221        122211   0 1245677777777777766 344311  


Q ss_pred             ---EecCCCCc--e-EEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          465 ---DYTDIREI--V-SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       465 ---~~~~~~~~--v-~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                         .+......  + ..-..+.|+.+ ++++.||.|.-+|..+|+.+.
T Consensus       190 ~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          190 TYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence               01110000  0 00001234666 557889999999999998876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.35  E-value=6.2  Score=37.34  Aligned_cols=95  Identities=9%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCCC---ceEEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIRE---IVSAVCY  478 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~~~~~~---~v~~v~~  478 (531)
                      ..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-........   ....+. 
T Consensus       184 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-  260 (308)
T 1zgk_A          184 NSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-  260 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred             ceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-
Confidence            458889988776544322  11111122222  56777887765     469999999887654332211   122222 


Q ss_pred             ccCCCEEEEEeCC-----CcEEEEeCCCCeEEEE
Q 009614          479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       479 spdg~~l~sgs~d-----g~I~iwd~~~~~l~~~  507 (531)
                       -++++++.|+.+     ..+.+||+.+++-...
T Consensus       261 -~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          261 -HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             -ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             -ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence             267788888754     4588999998876543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.34  E-value=19  Score=41.26  Aligned_cols=218  Identities=12%  Similarity=0.062  Sum_probs=102.1

Q ss_pred             CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC------CCEEEEEeC-CCcEEEEEcccCccc
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGE-DGTVRVWKVIEHERL  319 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~I~iWd~~~~~~~  319 (531)
                      +.+++.+. .+.+.++++....  +..   ... ..-...|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+
T Consensus       523 ~~~vvva~-g~~l~~fel~~~~--L~~---~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          523 SSQVVVAV-GRALYYLQIHPQE--LRQ---ISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             SSEEEEEE-TTEEEEEEEETTE--EEE---EEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCEEEEEE-CCEEEEEEeeCCc--eee---ecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            34555554 5677777665321  111   111 112467999999863      469999996 999999999865544


Q ss_pred             cceecCC-CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEe--CCccccccCcceeEeecCCCCeeEEEE
Q 009614          320 DGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL--PPKVFRLLEKPLHEFQGHSSEVLDLSW  396 (531)
Q Consensus       320 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~I~~l~~  396 (531)
                      ....... ..+..+.+..-..              ..+.+.+-.++.++.+  +.....+.... ..+.| ..++.-..+
T Consensus       596 ~~~~L~~~~~p~si~l~~~~~--------------~~~L~igl~dG~l~~~~~d~~tg~l~d~r-~~~LG-~~pv~L~~~  659 (1158)
T 3ei3_A          596 HKEMLGGEIIPRSILMTTFES--------------SHYLLCALGDGALFYFGLNIETGLLSDRK-KVTLG-TQPTVLRTF  659 (1158)
T ss_dssp             EEEECCSSCCEEEEEEEEETT--------------EEEEEEEETTSEEEEEEECTTTCCEEEEE-EEECC-SSCCEEEEE
T ss_pred             EEEECCCCCCCcEEEEEEeCC--------------CcEEEEEeCCCeEEEEEEcCCCCccccce-eEEcC-CCceEEEEE
Confidence            3322211 1111221111110              1122233333333222  22111221111 11222 234433333


Q ss_pred             cCCC--eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCC-CCEEEEEeCCCeEEEEeCCCCe--EEEecCCCC
Q 009614          397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQ--VVDYTDIRE  471 (531)
Q Consensus       397 sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d-~~~l~sgs~Dg~I~Iwd~~~~~--~~~~~~~~~  471 (531)
                      ...+  .+++++ +....+|.-+..-....+....--....|+... .+-++..+ ++.++|..+...+  .+.......
T Consensus       660 ~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~  737 (1158)
T 3ei3_A          660 RSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYE  737 (1158)
T ss_dssp             ESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSS
T ss_pred             eeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCC
Confidence            3333  333333 444444543332222222222212333454311 23444433 4569998875432  223445567


Q ss_pred             ceEEEEEccCCCEEEEEe
Q 009614          472 IVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs  489 (531)
                      .+..++++|+.+.++++.
T Consensus       738 Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          738 SPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             EEEEEEEEGGGTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEE
Confidence            889999999888766654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.29  E-value=3.6  Score=40.16  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEE--EEee----cCCceEEEEEeeCC----CCEEEEEeCC-----Ce
Q 009614          388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL--RVFS----HNNYVTSVAFNPVD----DNYFISGSID-----GK  452 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l--~~~~----h~~~V~sv~fsp~d----~~~l~sgs~D-----g~  452 (531)
                      -.....|+|.|+|.|+.+..++.|++++  .++..  ..+.    .......|+|+| +    +.++++-...     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence            4457799999999666667779999998  44322  1111    235689999999 6    4444443332     67


Q ss_pred             EEEEeCCCCe-----E-EE-ec---CCCCceEEEEEccCCCEEEEEe
Q 009614          453 VRIWEVRRCQ-----V-VD-YT---DIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       453 I~Iwd~~~~~-----~-~~-~~---~~~~~v~~v~~spdg~~l~sgs  489 (531)
                      |..|+.....     . +. +.   ........++|.|||.+.++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            8888877532     1 22 22   1112346899999997666643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.75  E-value=0.18  Score=49.35  Aligned_cols=113  Identities=5%  Similarity=-0.023  Sum_probs=73.5

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeEEEEeecC--CceEEEEEe--eCCCCEEEEE-eCCCeEEEEeCCCCeEEEecC-----
Q 009614          399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFN--PVDDNYFISG-SIDGKVRIWEVRRCQVVDYTD-----  468 (531)
Q Consensus       399 ~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~--~~V~sv~fs--p~d~~~l~sg-s~Dg~I~Iwd~~~~~~~~~~~-----  468 (531)
                      .+.++.++.||.|.-+|..+|+.+..+...  .++....-.  +.++..++.. +.||.|..++..++...-...     
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            348899999999999999999999998744  233222111  1122333333 589999999998875431110     


Q ss_pred             CCCceEE---EEE-c----cCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          469 IREIVSA---VCY-C----PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       469 ~~~~v~~---v~~-s----pdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ...++..   ... .    ..+..+++|+.+|++.-.|+.+|+++.++...
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            1111211   000 0    14557899999999999999999999887643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.62  E-value=8.9  Score=35.96  Aligned_cols=95  Identities=15%  Similarity=0.240  Sum_probs=57.0

Q ss_pred             CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCCCc--eEEEEEc
Q 009614          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIREI--VSAVCYC  479 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~~~~~~~--v~~v~~s  479 (531)
                      ..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-.........  -.+++ .
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~  249 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-A  249 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E
T ss_pred             cEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-E
Confidence            458899998877654432  11111122222  67788888764     3699999998765543322111  11122 2


Q ss_pred             cCCCEEEEEeCCC-----cEEEEeCCCCeEEE
Q 009614          480 PDGKGGIVGTMTG-----NCRFYDIKDNQLYQ  506 (531)
Q Consensus       480 pdg~~l~sgs~dg-----~I~iwd~~~~~l~~  506 (531)
                      .++++++.|+.++     .+.+||+.+++-..
T Consensus       250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             ECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            3777888888654     48999999887543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=91.62  E-value=16  Score=38.81  Aligned_cols=116  Identities=4%  Similarity=-0.070  Sum_probs=69.3

Q ss_pred             CCeeEEEEcC-CC-eEEEEeCCC--cEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEE-EEeCCCeEEEEeCCCCe
Q 009614          389 SEVLDLSWSK-NG-FLLSSSADK--TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQ  462 (531)
Q Consensus       389 ~~I~~l~~sp-~~-~l~s~s~Dg--~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~-sgs~Dg~I~Iwd~~~~~  462 (531)
                      .....|++.| .| ++++-....  .|...++.......... .-...+.|++++ ..+.|+ +-+..+.|...++....
T Consensus       432 ~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~-~~~~LYw~D~~~~~I~~~~~dG~~  510 (628)
T 4a0p_A          432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS-RLGKLFWADSDLRRIESSDLSGAN  510 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC-CCCEEEEEeCCCCEEEEEeCCCCc
Confidence            4577888988 56 444433222  56666665443333333 234578999999 555554 44556889999997654


Q ss_pred             EEEec-CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          463 VVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       463 ~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      ...+. ..-....+|+... +.++++=...+.|...|..+|+...
T Consensus       511 r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~  554 (628)
T 4a0p_A          511 RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRT  554 (628)
T ss_dssp             CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred             eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcE
Confidence            33322 2334467777654 4445555556778888887766443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.48  E-value=8  Score=36.25  Aligned_cols=94  Identities=11%  Similarity=0.143  Sum_probs=56.1

Q ss_pred             CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCCC---ceEEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIRE---IVSAVCY  478 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~~~~~~---~v~~v~~  478 (531)
                      ..+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-........   ....+. 
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  204 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-  204 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             ceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-
Confidence            358889988876554332  11111122222  56777777765     458999998876654322211   112222 


Q ss_pred             ccCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 009614          479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQ  506 (531)
Q Consensus       479 spdg~~l~sgs~d-----g~I~iwd~~~~~l~~  506 (531)
                       -++++++.|+.+     ..+.+||+.+++...
T Consensus       205 -~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          205 -LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             -ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             -ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence             267777888764     468999999887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.07  E-value=5.1  Score=46.39  Aligned_cols=222  Identities=14%  Similarity=0.204  Sum_probs=122.9

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (531)
                      ...|.|-|+..+......     .+.+ .    +.-.+|..+.||-=. ..++.|+|+.+...++.+.....   .++|.
T Consensus        47 ~~~vvIidl~~~~~~~rr-----pi~A-d----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~---VvfWk  112 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR-----PISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWK  112 (1630)
T ss_pred             CceEEEEECCCCCCcccc-----cccc-h----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC---ceEEE
Confidence            347888888865533111     1111 1    122356565555543 67899999999888777765443   45555


Q ss_pred             ecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC----CCCeeEEEEcCCC--eEEEEe---
Q 009614          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH----SSEVLDLSWSKNG--FLLSSS---  406 (531)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~I~~l~~sp~~--~l~s~s---  406 (531)
                      +-....+..+                .+..++.|+...   ...|++.+..|    ...|..-..+++.  .+++|=   
T Consensus       113 Wis~~~l~lV----------------T~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          113 WISLNTVALV----------------TDNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             ecCCCeeEEE----------------cCCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC
Confidence            5544433322                233466666533   23455555555    3456666777777  444432   


Q ss_pred             ---CCCcEEEEECCCCeEEEEeecCCceEEEEEe--eCCCCEEEEEeC---CCeEEEEeCCCC---------eEEEe-cC
Q 009614          407 ---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN--PVDDNYFISGSI---DGKVRIWEVRRC---------QVVDY-TD  468 (531)
Q Consensus       407 ---~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fs--p~d~~~l~sgs~---Dg~I~Iwd~~~~---------~~~~~-~~  468 (531)
                         ..|.+.+|.+..+.....-+|...-..+...  +....+|+.+..   .++++|-++...         +.+.. ..
T Consensus       174 ~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~  253 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (1630)
T ss_pred             CCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence               3577888887655433222232222222211  101122222211   268999988543         11111 11


Q ss_pred             ---CCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          469 ---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       469 ---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                         ..+-..++..++.-..+..-+.-|.|++||+.++.++...++
T Consensus       254 ~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             cccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence               123345677788777888899999999999999998765554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.18  E-value=10  Score=36.60  Aligned_cols=57  Identities=18%  Similarity=0.059  Sum_probs=31.5

Q ss_pred             eEEEEeCCCCeEEE---ecCCCCceEEEEEccCCCEEEEEeCCC------cEEEEeCCCCeEEEEeee
Q 009614          452 KVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg------~I~iwd~~~~~l~~~~~~  510 (531)
                      .+.+||+.+.+-..   +......-.+  ...++++++.|+.++      .|.++++++++.++..+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            57889988764332   2211222222  334788888888653      367779998888876553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.41  E-value=13  Score=34.78  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=58.7

Q ss_pred             eEEEEeCC------CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeC---------CCeEEEEeCCCCeE
Q 009614          401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSI---------DGKVRIWEVRRCQV  463 (531)
Q Consensus       401 ~l~s~s~D------g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~---------Dg~I~Iwd~~~~~~  463 (531)
                      +++.|+.+      ..+.+||..+.+....-.  ..-.-.+++..  ++.+++.|+.         -..+.+||+.+.+-
T Consensus       104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W  181 (306)
T 3ii7_A          104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW  181 (306)
T ss_dssp             EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred             EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence            45555543      458889988876554422  11111122222  5677777764         34588999998865


Q ss_pred             EEecCCCC---ceEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 009614          464 VDYTDIRE---IVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQ  506 (531)
Q Consensus       464 ~~~~~~~~---~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~~~~l~~  506 (531)
                      ........   .-..+.+  ++++++.|+.+     ..+.+||+.+++-..
T Consensus       182 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  230 (306)
T 3ii7_A          182 TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM  230 (306)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred             EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
Confidence            54332221   1122222  67777777754     358999998876543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.11  E-value=20  Score=36.05  Aligned_cols=238  Identities=11%  Similarity=0.190  Sum_probs=138.6

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc-
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-  317 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H--~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~-  317 (531)
                      .-.+|..+.+|.-. ...+.|+|+....+          ++.|  ...|.-=+|-.+. .|+-.+ +..|.-|++.... 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~k----------lks~~~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~  137 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSK----------MKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ  137 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEE----------EEEEECSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCC
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhh----------hcceecCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCC
Confidence            45677777777654 68999999985443          2223  2456555665333 455443 4579999986532 


Q ss_pred             cccceecCC--CCCeeEEEeecCCcceeeee-ccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          318 RLDGFDVQD--TDPSCLYFTINHLSQLIPID-VDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       318 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      ..+.+..+.  .....+.+..+.....+.+. ....        .+...+.+-+|..     ..+.-+.+.||.+....+
T Consensus       138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~--------~~~v~G~mQLYS~-----er~~sQ~ieGhaa~F~~~  204 (494)
T 1bpo_A          138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--------QNRVVGAMQLYSV-----DRKVSQPIEGHAASFAQF  204 (494)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE--------TTEEEEEEEEEES-----TTCCEEEECCSEEEEEEE
T ss_pred             chhheecchhcccceEEEEEECCCCCeEEEEeeccc--------CCcccceEEEeec-----cccccchheeeeeeeEEE
Confidence            222222221  12333344444433332211 1000        0011223333322     234456678887766666


Q ss_pred             EEcCCC----eEEEEeCC---CcEEEEECCCC---------eEEEEe-e---cCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          395 SWSKNG----FLLSSSAD---KTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       395 ~~sp~~----~l~s~s~D---g~V~lwdl~~~---------~~l~~~-~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      ....+.    .++.+...   +.++|-++...         +.+..+ .   ..+...++..++ ....++.-+.-|.|+
T Consensus       205 ~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~  283 (494)
T 1bpo_A          205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIH  283 (494)
T ss_dssp             ECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEE
T ss_pred             ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEE
Confidence            554322    44444433   78999988543         111111 1   345677899999 777888889999999


Q ss_pred             EEeCCCCeEEEe-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          455 IWEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       455 Iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      +||+.++.++.. .-..+.|...+.......++....+|.|.--.++...++
T Consensus       284 lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             EEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            999999998843 334456666666666667888788898887777776654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.81  E-value=15  Score=39.47  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=63.3

Q ss_pred             CC-eEEEEeCCC--cEEEEECCCCeEEEEee------cCCceEEEEEeeCCCCEEEEEeC--C-----CeEEEEeCCCCe
Q 009614          399 NG-FLLSSSADK--TVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI--D-----GKVRIWEVRRCQ  462 (531)
Q Consensus       399 ~~-~l~s~s~Dg--~V~lwdl~~~~~l~~~~------h~~~V~sv~fsp~d~~~l~sgs~--D-----g~I~Iwd~~~~~  462 (531)
                      ++ .++.|+.++  .+.+||..+......-.      ......++.+...++.+++.|+.  +     ..+.+||+.+.+
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            44 566665443  68999998877654331      11122335556522667777765  2     468999998876


Q ss_pred             ------EEEecC---CCCceEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCeEE
Q 009614          463 ------VVDYTD---IREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKDNQLY  505 (531)
Q Consensus       463 ------~~~~~~---~~~~v~~v~~spdg~~l~sgs~d--------g~I~iwd~~~~~l~  505 (531)
                            ......   ....-.+++...++++++.|+.+        ..|.+||+.+++..
T Consensus       580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence                  222211   11111233333447888888753        45999999988765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.98  E-value=18  Score=34.03  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=55.6

Q ss_pred             CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeCC-----CeEEEEeCCCCeEEEecCCC---CceEEEEE
Q 009614          409 KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAVCY  478 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~D-----g~I~Iwd~~~~~~~~~~~~~---~~v~~v~~  478 (531)
                      ..+.+||+.+.+....-...  ..-.+++..  ++.+++.|+.+     ..+.+||+.+.+-.......   .....+.+
T Consensus       137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  214 (308)
T 1zgk_A          137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL  214 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE
Confidence            45888998887654432211  111122222  56777777764     45899999887655432211   11222233


Q ss_pred             ccCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 009614          479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQ  506 (531)
Q Consensus       479 spdg~~l~sgs~d-----g~I~iwd~~~~~l~~  506 (531)
                        ++++++.|+.+     ..+.+||+.+++-..
T Consensus       215 --~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          215 --HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             --TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             --CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence              67778888765     459999999876543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.73  E-value=24  Score=34.24  Aligned_cols=246  Identities=15%  Similarity=0.144  Sum_probs=116.3

Q ss_pred             ccccceeeeCCCCeEEeeecCCeEEEEeCCCCccc-ccccccceEEcccCCCEEEEEEccC---CCEEEEE---eCCCcE
Q 009614          236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLD---GQYLASG---GEDGTV  308 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~-~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasg---s~Dg~I  308 (531)
                      .....++|.|+|.++++-...|+|++++....... +..+.  ..+....+....|+|+|+   +.+|+..   ..++.|
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            34456899999997777655899999976533321 11000  112234567899999995   3344432   234455


Q ss_pred             EEEEcccCc----cc---c----ceec-CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc
Q 009614          309 RVWKVIEHE----RL---D----GFDV-QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL  376 (531)
Q Consensus       309 ~iWd~~~~~----~~---~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (531)
                      .-|.+..+.    .+   .    .+.. .......+.|.++.  .++....+........ -.....+.++.+++...-.
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~q-d~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQ-DRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTT-CTTCSTTCEEEECTTSSBC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCcccc-CCCCCCCEEEEEeCCCCcc
Confidence            555554321    00   0    0110 00111223332221  2221111111100000 0012234455554432110


Q ss_pred             cCcce---eEe-ecCCCCeeEEEEcCCCeEEEEeC--CCcEEEEECCCCe------------------EEEEeecC-Cce
Q 009614          377 LEKPL---HEF-QGHSSEVLDLSWSKNGFLLSSSA--DKTVRLWQVGIDR------------------CLRVFSHN-NYV  431 (531)
Q Consensus       377 ~~~~~---~~~-~~h~~~I~~l~~sp~~~l~s~s~--Dg~V~lwdl~~~~------------------~l~~~~h~-~~V  431 (531)
                      ...|.   ..+ .+| .....++|+|+|.|.++-.  |+.-.|--+..+.                  ++..+.+. ...
T Consensus       187 ~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap  265 (347)
T 3das_A          187 PGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP  265 (347)
T ss_dssp             TTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred             CCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence            11111   112 234 3467899999885555432  3322333222221                  22333332 356


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeE----EE-ecCCCCceEEEEEccCCCEEEEEe
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----VD-YTDIREIVSAVCYCPDGKGGIVGT  489 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~----~~-~~~~~~~v~~v~~spdg~~l~sgs  489 (531)
                      ..|+|.  ++.+|+..-..+.|....+.....    .. +.+....+..|+..|||.++++..
T Consensus       266 ~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          266 SGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            778886  466666666666676666655432    12 333446789999999997666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.45  E-value=11  Score=38.24  Aligned_cols=102  Identities=12%  Similarity=0.101  Sum_probs=61.1

Q ss_pred             CCCeeEEEEcCCCeEEEEeCCC-cEEEEECCCCeEEE--Eee-------cCCceEEEEEeeCC---CCEEEEEeC-----
Q 009614          388 SSEVLDLSWSKNGFLLSSSADK-TVRLWQVGIDRCLR--VFS-------HNNYVTSVAFNPVD---DNYFISGSI-----  449 (531)
Q Consensus       388 ~~~I~~l~~sp~~~l~s~s~Dg-~V~lwdl~~~~~l~--~~~-------h~~~V~sv~fsp~d---~~~l~sgs~-----  449 (531)
                      ......|+|.|+|.|+.+...+ .|++++..++....  .+.       ....+..|+|+| +   +.+|+....     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence            4467899999999555556664 68888865554322  221       134567999999 4   444444332     


Q ss_pred             --------CCeEEEEeCCCC-------eEE-E-ec-CCCCceEEEEEccCCCEEEEEeC
Q 009614          450 --------DGKVRIWEVRRC-------QVV-D-YT-DIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       450 --------Dg~I~Iwd~~~~-------~~~-~-~~-~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                              ...|.-|+....       +.+ . +. ........|+|.|||.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    234555554321       111 1 21 11235789999999987777553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=85.76  E-value=21  Score=33.27  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=60.6

Q ss_pred             CC-eEEEEeCCC-----cEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC-------CeEEEEeCCCCeE
Q 009614          399 NG-FLLSSSADK-----TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-------GKVRIWEVRRCQV  463 (531)
Q Consensus       399 ~~-~l~s~s~Dg-----~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D-------g~I~Iwd~~~~~~  463 (531)
                      ++ .++.|+.++     .+.+||+.+.+....-.  ....-.+++..  ++.+++.|+.+       ..+.+||+.+.+-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            44 556665443     47889988877654432  11111222222  56777777643       3588999998765


Q ss_pred             EEecCCC---CceEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 009614          464 VDYTDIR---EIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQ  506 (531)
Q Consensus       464 ~~~~~~~---~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~~~~l~~  506 (531)
                      .......   .....+.  -++++++.|+.+     ..+.+||+.+++-..
T Consensus       186 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             EECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence            5432211   1122222  267788888765     369999999877554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=83.49  E-value=33  Score=39.92  Aligned_cols=238  Identities=11%  Similarity=0.186  Sum_probs=124.8

Q ss_pred             eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEccc--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc-c
Q 009614          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-R  318 (531)
Q Consensus       242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H--~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~-~  318 (531)
                      -.+|..+.+|.-. ..++.|+++....+.          +.|  ...|.-=+|-.+. .|+-.+ +..|.-|++.... .
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~kl----------ks~~~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P  138 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKM----------KAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP  138 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhh----------cccccCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCcc
Confidence            4566666666654 688999999854432          222  2456555664333 344433 3579999996432 2


Q ss_pred             ccceecCCC--CCeeEEEeecCCcceeee-eccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          319 LDGFDVQDT--DPSCLYFTINHLSQLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       319 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .+.+..+..  ....+.+..+.....+.+ +....        .+...|.+-+|...     .+..+.+.||.+....+.
T Consensus       139 ~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~--------~~~v~G~mQLyS~e-----r~~sQ~iegha~~F~~~~  205 (1630)
T 1xi4_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--------QNRVVGAMQLYSVD-----RKVSQPIEGHAASFAQFK  205 (1630)
T ss_pred             HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC--------CCcccceeeeeecc-----cccchhhhHhHhhhheec
Confidence            222222211  122233333333322221 11000        01122333333322     223444566665554444


Q ss_pred             EcCCC----eEEEEeC---CCcEEEEECCCC---e------EEEEe-e---cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          396 WSKNG----FLLSSSA---DKTVRLWQVGID---R------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       396 ~sp~~----~l~s~s~---Dg~V~lwdl~~~---~------~l~~~-~---h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      ...+.    .+..+..   .+.+.|-++...   .      .+..+ .   ..+...++..++ ....+..-+.-|.|.+
T Consensus       206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~  284 (1630)
T 1xi4_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHL  284 (1630)
T ss_pred             cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEE
Confidence            33211    2222222   267888888543   1      11111 1   244556788888 6777888889999999


Q ss_pred             EeCCCCeEEEe-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          456 WEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       456 wd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      ||+.++.++-. .-....|...+.......++.....|.|.--.+....++.
T Consensus       285 ~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~  336 (1630)
T 1xi4_A          285 YDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP  336 (1630)
T ss_pred             EecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence            99999988742 2233455545555554556666678877777776666554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=83.40  E-value=53  Score=35.33  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=72.6

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCC------CeEE--EEee-----cCCceEEEEEeeCCCCEEEEEeCCCeEEE
Q 009614          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGI------DRCL--RVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRI  455 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~------~~~l--~~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~I  455 (531)
                      ..|.++...+++.|..|+..+-|.++|..+      ....  ..+.     ....|.+|...+ ++++.+.++..+-|..
T Consensus       419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~  497 (758)
T 3ott_A          419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK  497 (758)
T ss_dssp             SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred             ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence            457778777778777788776788888542      1111  1222     234589999888 7777764444456888


Q ss_pred             EeCCCCeEEEecCC----CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          456 WEVRRCQVVDYTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       456 wd~~~~~~~~~~~~----~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      +|..+++...+...    ...+.++....+|.+.+ |+..| +..|+..+++.
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~  548 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHGG-VMRINPKDESQ  548 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETTE-EEEECC--CCC
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecCc-eEEEecCCCce
Confidence            99988877654321    23578888888887554 55555 77888766543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=82.59  E-value=33  Score=32.42  Aligned_cols=98  Identities=6%  Similarity=-0.017  Sum_probs=48.8

Q ss_pred             EcCCC-eEEEEe-CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC--CeEEEEeCCCCeEEEecCCCC
Q 009614          396 WSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--GKVRIWEVRRCQVVDYTDIRE  471 (531)
Q Consensus       396 ~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D--g~I~Iwd~~~~~~~~~~~~~~  471 (531)
                      +++.+ .|+-.+ ....|..-++..+.....+..  ... +.++| ++.+|+-....  ..|..-++.......+..  .
T Consensus       152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~  225 (302)
T 3s25_A          152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--A  225 (302)
T ss_dssp             SEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEECSC--S
T ss_pred             eeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--C
Confidence            34444 333333 356677777766655444432  222 23557 56666554432  356666666554443332  1


Q ss_pred             ceEEEEEccCCCEEEEEeC--CCcEEEEeCCC
Q 009614          472 IVSAVCYCPDGKGGIVGTM--TGNCRFYDIKD  501 (531)
Q Consensus       472 ~v~~v~~spdg~~l~sgs~--dg~I~iwd~~~  501 (531)
                      .+  ..|+|++.+|.-+..  .+.|..-++..
T Consensus       226 ~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          226 NI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             CE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             Cc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            22  336777777765432  24455555543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.73  E-value=37  Score=31.77  Aligned_cols=103  Identities=6%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             eEEEEeC-C-----CcEEEEECCCCeEEEEeecC--CceEEEEEeeCCCCEEEEEeCCC-----eEEEEeCCCCeEEEec
Q 009614          401 FLLSSSA-D-----KTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYT  467 (531)
Q Consensus       401 ~l~s~s~-D-----g~V~lwdl~~~~~l~~~~h~--~~V~sv~fsp~d~~~l~sgs~Dg-----~I~Iwd~~~~~~~~~~  467 (531)
                      .++.|+. +     ..+.+||..+.+....-...  ..-.+++..  ++.+++.|+.++     .+.+||+.+.+-....
T Consensus       151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred             EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence            5556654 2     46899999887654433211  111122222  667888887654     5889999987655433


Q ss_pred             CCC---CceEEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCeEEEE
Q 009614          468 DIR---EIVSAVCYCPDGKGGIVGTMTG--------------NCRFYDIKDNQLYQQ  507 (531)
Q Consensus       468 ~~~---~~v~~v~~spdg~~l~sgs~dg--------------~I~iwd~~~~~l~~~  507 (531)
                      ...   .....+.  -++++++.|+.++              .+.+||+.+++-...
T Consensus       229 ~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          229 AFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            221   1122222  2677788887642              478999998876543

>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}

Probab=80.14  E-value=0.9  Score=28.78  Aligned_cols=20  Identities=40%  Similarity=0.697  Sum_probs=16.3

Q ss_pred             CCcccccccccccccccccC
Q 009614            4 VSNEEEEEQFFDTCEEISYV   23 (531)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~   23 (531)
                      .|+|+||-+||||.+=|...
T Consensus        12 ~SdEDed~EfFDA~efITv~   31 (47)
T 2rr3_B           12 MSDEDDENEFFDAPEIITMP   31 (47)
T ss_dssp             SCCCCCSSCCBCCCSSCSSC
T ss_pred             ccccccccccccccceeEcc
Confidence            46788899999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	531
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 5e-24
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 11/193 (5%)

Query: 271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
           + + Y  + F  H   +  ++ + DG  +AS   D TVRVW V   E             
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRK----SSDLTCVVLPPKVFRLLEKPLHEFQG 386
           C+ +        I      E     K        S D T  +            L    G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVG 245

Query: 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF 444
           H + V  + +   G F+LS + DKT+R+W     RC++  + H ++VTS+ F+     Y 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYV 304

Query: 445 ISGSIDGKVRIWE 457
           ++GS+D  V++WE
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 3e-18
 Identities = 42/277 (15%), Positives = 81/277 (29%), Gaps = 52/277 (18%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                H   +  + F      + S  ED T++VW     +              + F  +
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 338 HLSQLIPIDVDKEKI--------------------------DKTKSLRKSSDLTCVVLPP 371
                        K+                          +    +  S D T  +   
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429
           +        +  F GH   V  +  +++G  + S S D+TVR+W V    C      H +
Sbjct: 131 QTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 430 YVTSVAF-------------------NPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469
            V  +++                   +     + +SGS D  +++W+V     +      
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
              V  V +   GK  +        R +D K+ +  +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 7e-11
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 2/127 (1%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
              +   GH S V  + +      ++S+S D T+++W        R    H + V  ++F
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF 496
           +          +              +         VS+V   P+G   +  +     + 
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 497 YDIKDNQ 503
           ++++   
Sbjct: 128 WEVQTGY 134

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 12/163 (7%)

Query: 155 GADLVVSDNDQDEIEIESRLQE-SGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDL 213
             D  V        E ++ L+E     + +S+         S +               L
Sbjct: 162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 221

Query: 214 VDAKRKVKRGWLKKLGAMARIIDRHG----SATLKPGDHELTLGQRMRRVRVHPVKKQSR 269
             ++ K  + W    G     +  H           G   +      + +RV   K +  
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
                   +   AHE  + ++ F     Y+ +G  D TV+VW+
Sbjct: 282 M-------KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 5e-19
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 31/263 (11%)

Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
           + T +    H   I  M +  D + L S  +DG + +W      ++    ++ +      
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT-------------------------CVV 368
           +  +          +   I   K+   +  ++                            
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL-LSSSADKTVRLWQVGIDRCLRVFS- 426
                     +    F GH+ +V+ LS + +  L +S + D + +LW V    C + F+ 
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI---VSAVCYCPDGK 483
           H + + ++ F P + N F +GS D   R++++R  Q +       I   +++V +   G+
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 484 GGIVGTMTGNCRFYDIKDNQLYQ 506
             + G    NC  +D        
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAG 306

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNY---VTSV 434
                F GH S++  + +  NG    + S D T RL+ +  D+ L  +SH+N    +TSV
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGN 493
           +F+       ++G  D    +W+  +             VS +    DG     G+    
Sbjct: 277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

Query: 494 CRFYD 498
            + ++
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
           Q F  HE  I  + F  +G   A+G +D T R++ +   + L  +   +        + +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-KPLHEFQGHSSEVLDLSW 396
              +L+              L    D  C      V+  L+        GH + V  L  
Sbjct: 280 KSGRLL--------------LAGYDDFNC-----NVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 397 SKNG-FLLSSSADKTVRLW 414
           + +G  + + S D  +++W
Sbjct: 321 TDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
           S +       L  G       V    K  R             H+  +  +  + DG  +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGMAV 327

Query: 300 ASGGEDGTVRVW 311
           A+G  D  +++W
Sbjct: 328 ATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 349 KEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406
           K +I D  K+   ++          V R+  +     +GH +++  + W  +   L+S+S
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74

Query: 407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
            D  + +W       +      +++V + A+ P   NY   G +D    I+ ++  +
Sbjct: 75  QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTRE 130

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 57/223 (25%)

Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
                +  G   R VRV   +            +    H+ S+ ++ F+ DGQ + SG  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
           D +V++W +            ++                                     
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSG------------------------------------ 298

Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR 423
                              + GH   VL ++ ++N  ++LS S D+ V  W       L 
Sbjct: 299 --------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

Query: 424 VFS-HNNYVTSVAFNPV-----DDNYFISGSIDGKVRIWEVRR 460
           +   H N V SVA         + N F +GS D K RIW+ ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 9e-15
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 21/195 (10%)

Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
           NH   + P  +D +      +L+K ++   ++  P + R ++  LH+   H+S V  + +
Sbjct: 11  NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 70

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFN 437
           S +G  L++  +KT ++++V     +   S                    + Y+ SV F+
Sbjct: 71  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130

Query: 438 PVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF 496
           P D  +  +G+ D  +RIW++  R  V+      + + ++ Y P G   + G+     R 
Sbjct: 131 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 497 YDIKDNQLYQQNQIC 511
           +D++  Q      I 
Sbjct: 190 WDLRTGQCSLTLSIE 204

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 50/297 (16%), Positives = 96/297 (32%), Gaps = 51/297 (17%)

Query: 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
                V        + +           + +  I ++ FS DG++LA+G ED  +R+W +
Sbjct: 91  SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150

Query: 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK------------- 360
              + +      + D   L +  +    +        +I   ++ +              
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210

Query: 361 -------------SSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403
                        S D    V       +   L+       GH   V  + ++++G  ++
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 404 SSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFISGSID 450
           S S D++V+LW +                       H ++V SVA    +D Y +SGS D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKD 329

Query: 451 GKVRIWEVRRCQVVD-YTDIREIVSAVCYC------PDGKGGIVGTMTGNCRFYDIK 500
             V  W+ +    +      R  V +V         P+      G+     R +  K
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 16/245 (6%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYF 334
            + L H   +  +KFS DG+YLA+G  + T +V++V +     RL      + DP  L  
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
           + +  S L    V      K      ++     ++        +  +             
Sbjct: 115 SSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
            +     L+S S D+TVR+W +   +C    S  + VT+VA +P D  Y  +GS+D  VR
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 455 IWEVRRCQVVD--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
           +W+     +V+         T  ++ V +V +  DG+  + G++  + + +++++     
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 507 QNQIC 511
            ++  
Sbjct: 291 DSKTP 295

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 36/247 (14%), Positives = 73/247 (29%), Gaps = 21/247 (8%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-----------------DGFDV 324
            H+  ++T      G  + SG +D T++VW  +  + L                 +    
Sbjct: 14  GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
             TD +   +       +  +      +       K           +V+ +        
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
                  +         ++S + D  V++W    + CL     +           D  + 
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHV 190

Query: 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504
           +SGS+D  +R+W+V     + +T                  + G      + +DIK  Q 
Sbjct: 191 VSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 249

Query: 505 YQQNQIC 511
            Q  Q  
Sbjct: 250 LQTLQGP 256

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
             LH  QGH++ V  L +     ++S S D ++R+W V    C+   + H +  + +   
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC--PDGKGGIVGTMTGNCR 495
               N  +SG+ D  V+IW+++  Q +          +   C   +    I  +  G  +
Sbjct: 227 D---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 496 FYDIKDNQLYQQ 507
            +D+K  +  + 
Sbjct: 284 LWDLKTGEFIRN 295

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349
                DG ++ SG  D ++RVW V     +       +  S +    N L          
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL---------- 230

Query: 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK 409
                   +  ++D T  +   K  + L+        H S V  L ++KN F+++SS D 
Sbjct: 231 --------VSGNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKN-FVITSSDDG 280

Query: 410 TVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIW 456
           TV+LW +     +R             V  +  +         GS +G    K+ + 
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 7e-10
 Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 34/213 (15%)

Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356
           + + SG  D  V+VW       L            L F   H+                 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV----------------- 190

Query: 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
            +  S D +  V   +        +H   GH S    +    N  L+S +AD TV++W +
Sbjct: 191 -VSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDI 244

Query: 417 GIDRCLRVFSHNNYVTS-VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV------DYTDI 469
              +CL+     N   S V     + N+ I+ S DG V++W+++  + +      +    
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304

Query: 470 REIVSAVCYCPDGK----GGIVGTMTGNCRFYD 498
             +V  +           G   GT        D
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 5/104 (4%)

Query: 379 KPLHEFQGHSSEVLD-LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
           K     +GH   V+  L +  N  ++S S D T+++W     +CLR    H   V S   
Sbjct: 7   KSPKVLKGHDDHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480
               +      +              +         V  +    
Sbjct: 66  RD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFN 437
           H F      +   +W+K+   +     +  V +++   ++ ++V     HN  VT V + 
Sbjct: 3   HSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS---AVCYCPDGKGGIVGTMTGNC 494
           P D N  ++   D    +W ++         I  I      V + P+ K   VG+ +   
Sbjct: 61  P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 495 RFYDIKDNQLYQQNQIC 511
                +    +   +  
Sbjct: 120 SICYFEQENDWWVCKHI 136

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 20/234 (8%), Positives = 56/234 (23%), Gaps = 68/234 (29%)

Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345
            I    ++ D   +A    +  V ++                                  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIY---------------------------------- 34

Query: 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404
           +    K  +   L+                           H+ +V  + W+ +   +++
Sbjct: 35  EKSGNKWVQVHELK--------------------------EHNGQVTGVDWAPDSNRIVT 68

Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQ 462
              D+   +W +                +        ++  F  GS    + I    +  
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 463 VVDYTDIREI-----VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
                   +      V ++ + P+      G+    CR +     ++ ++    
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 25/233 (10%), Positives = 58/233 (24%), Gaps = 9/233 (3%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
            E   H G +  + ++ D   + + G D    VW +          +   + +       
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 338 HLSQLIPIDVDKEKID----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
              +   +      I     + ++           +   V  L   P        S    
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 394 LS-WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG 451
              +S     +      T    ++     +   S    +V  V F+  + +     S D 
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDS 223

Query: 452 KVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503
            V + +   +  V         + AV +  +    +          +      
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAA 275

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 4/84 (4%)

Query: 383 EFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441
            F G        S           + DK                 H N V+ ++      
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338

Query: 442 N---YFISGSIDGKVRIWEVRRCQ 462
                F +  +DG + IW+VR  +
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 265 KKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY----LASGGEDGTVRVWKV 313
           KK S E S+         H+ S+  +     G+       + G DG + +W V
Sbjct: 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV----GIDRCLRVFSHNNYVTS 433
           + +   Q     + D+    +   LL +S D ++ +++          L+   + + +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
             F    D     G++ G++   ++    
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 30/280 (10%), Positives = 70/280 (25%), Gaps = 54/280 (19%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV------------IEHE------------ 317
           A +  I  +K       L     DG++ V+K             + ++            
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 318 ----------RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367
                                PS    T N  +  I             +          
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV--- 424
                   +  K L+         +    + +  L+    +  V+ +++ +         
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 425 -FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV----------------RRCQVVDYT 467
                  +  VA  P +   +   SIDG+V +                        +  T
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248

Query: 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
           ++   V+++ + P  K        G    ++++  +  + 
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           +   +    +  V  + +S     L +  +D  +  W +   + ++ F+  N  + V   
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301

Query: 438 PVDDNYFISGSIDGKVRIWEV 458
              DN     + D   +    
Sbjct: 302 C-SDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 5/89 (5%)

Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----CQVVDYTDIREIVSAVCYCPDG 482
             +Y++ +   P   +  +  S DG + +++         ++     +  +    +  + 
Sbjct: 10  PKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 483 KGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
              I                    Q    
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTN 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 16/126 (12%), Positives = 30/126 (23%), Gaps = 17/126 (13%)

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----------------HNNYVTSVAFNP 438
              +      SS D  V +            S                    V S+ F+P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498
               +  +   DG +  W ++  + +         S V          + T     +   
Sbjct: 262 -RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320

Query: 499 IKDNQL 504
             D  +
Sbjct: 321 AIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 10/107 (9%), Positives = 26/107 (24%), Gaps = 8/107 (7%)

Query: 210 SRDLVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR 269
             D  ++ ++      +       +     S    P    L        +    ++ + +
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316
               +       A       +K +     L     D T +    I+ 
Sbjct: 286 ----IKN----FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 25/245 (10%)

Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
           + L  +  I + K   DG  L  GGE  T+ +W +         ++  + P+C    I+ 
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP-----------------------PKVFR 375
            S++         I       ++                                 + + 
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
           L E    +    +S++  L +   G +L        V +  V      ++  H + V S+
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271

Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
            F      +F+S   D  +  W       +  +     V +     D K  + G+     
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 495 RFYDI 499
             Y++
Sbjct: 331 TVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 24/161 (14%), Positives = 43/161 (26%), Gaps = 11/161 (6%)

Query: 361 SSDLTCVVLPPKVFRLLEKPLHEFQ----GHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
              +  V  PP        P H  Q     H   V  ++ S     + +     V++W +
Sbjct: 20  DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDI 79

Query: 417 GIDRC------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR 470
                      L   + +NY+ S    P D    I G     + IW++         ++ 
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138

Query: 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
               A           V     +     + D       +  
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 29/257 (11%), Positives = 55/257 (21%), Gaps = 32/257 (12%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------------- 327
           L H   +  +  S   +++ +GG  G V+VW +            D              
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 328 -----------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370
                                                         S    S  +   + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY 430
                                     +    L +   D TVR W +   R L+     + 
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
           + S+ + P    +   G     V +  V +            V ++ +   GK  +    
Sbjct: 227 IFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285

Query: 491 TGNCRFYDIKDNQLYQQ 507
                 +         Q
Sbjct: 286 DNLLNAWRTPYGASIFQ 302

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
                S+L+   S+D +Y+ +G  D    V++VI
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 5e-12
 Identities = 36/255 (14%), Positives = 78/255 (30%), Gaps = 27/255 (10%)

Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
           SL            +  +++  D Q + SG  D T+++W     E             CL
Sbjct: 4   SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61

Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC---------------------VVLPP 371
            +    +         +     T  +  +    C                     + +  
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV 431
                         GH + V  + +     + S+S D+T+++W         V + N + 
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SASGDRTIKVWNTSTCEF--VRTLNGHK 178

Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491
             +A     D   +SGS D  +R+W++     +   +  E +       + +  + G   
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYD 237

Query: 492 GNCRFYDIKDNQLYQ 506
           G  + +D+      +
Sbjct: 238 GKIKVWDLVAALDPR 252

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 38/185 (20%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H  ++  + F       ASG  D T++VW     E +   +      +CL +    +   
Sbjct: 137 HRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS- 193

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402
                     D T                +++ +             E++      N  +
Sbjct: 194 -------GSSDNT---------------IRLWDIECGACLRVLEGHEELVRCIRFDNKRI 231

Query: 403 LSSSADKTVRLWQV---------GIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452
           +S + D  +++W +             CLR    H+  V  + F   D+   +S S D  
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDT 288

Query: 453 VRIWE 457
           + IW+
Sbjct: 289 ILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 248 HELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305
             +  G    +++V  +      R  +     +  + H G +  ++F  D   + S   D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286

Query: 306 GTVRVW 311
            T+ +W
Sbjct: 287 DTILIW 292

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 1e-11
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
           W  +    +  AD T+R+W V   +C++ +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 453 VRIWEV 458
           +  +E+
Sbjct: 320 LNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 16/141 (11%)

Query: 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVD 440
             +    LS+                VR    G  +   V       ++ VT+V F+P+ 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 441 D-NYFISGSIDGKVRIWEVR---------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
              Y  SG   GKV +W                 ++  +   +S + +  +G+   V   
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 491 TGNCRFYDIKDNQLYQQNQIC 511
             +     I  +      ++ 
Sbjct: 136 GRDNFGVFISWDSGNSLGEVS 156

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 41/270 (15%), Positives = 68/270 (25%), Gaps = 48/270 (17%)

Query: 278 QEFLAHEGSILT-MKFS--LDGQYLASGGEDGTVRVWKV--------------------- 313
            +F  H  S++T +KFS     QYL SG E G V VW                       
Sbjct: 56  VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115

Query: 314 ---------------IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
                                                         I+    K  +    
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175

Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
               D   VV                    S V D+ +S +      +     ++     
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235

Query: 419 DRCLRVFSHNNYVTSVAFN-----PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-- 471
                +    +    V         +D   F +   D  +R+W+V   + V    + +  
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 472 -IVSAVCYCPDGKGGIV-GTMTGNCRFYDI 499
                V     G G I+  ++ G   FY++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.3 bits (149), Expect = 3e-11
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFN 437
                GH+  +  LS S +G  L S+ A+  +  W +      RVF   H   +T +   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
              D + +S      +++       V     +   +S+      
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 3e-07
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
              N  L + S D +V +W +       +    +H     +      ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 453 VRIWEV 458
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 4e-07
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           H  +I  +  S DG+ L S   +G +  W +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
             AH  S +     L+   + S G+D  ++ W V
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 381 LHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
           + +     S V  + W     ++S+  D  ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 13/199 (6%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
                         F  D + L              +        +      S  +    
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV------LNFSFEVVSKPFVIPL 225

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
                 P  +    +         +D+     P  V     + +   +            
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285

Query: 398 KNGFLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
           +       +     +  + V   +   V ++   +T +  +  D    +    DGK+  +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSA-DRKTVMVRKDDGKIYTF 341

Query: 457 EVRR--CQVVDYTDIREIV 473
            + +   +    TD R +V
Sbjct: 342 PLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 4/37 (10%), Positives = 17/37 (45%)

Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
            ++    + ++  ++ S D + +    +DG +  + +
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 15/248 (6%), Positives = 53/248 (21%), Gaps = 25/248 (10%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKV--IEHERLDGFDVQDTDPSCLYFTI 336
           +     I  ++   D +     G      + ++     + E+ +                
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
             +      ++    ++  K          ++    +        + F            
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH-------- 150

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
                       + + ++ +   +     + N++  + AF+  D       S        
Sbjct: 151 ----GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSP 205

Query: 457 EVR--------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508
           +            +      I    +     P       G    N  +       +   +
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265

Query: 509 QICLQGKK 516
              +   +
Sbjct: 266 YRMIIPLE 273

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 7e-11
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLW-------QVGIDRCLRVFSHNNYVTSVAF 436
            + H +++  +S   + F +S S D  +++W       +   D+    F H + +  V  
Sbjct: 10  GKAHDADIFSVSACNS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 437 ------NPVDDNYFISGSIDGKVRIWEVRR 460
                 +  +     + S  G +  + + R
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 6e-10
 Identities = 27/268 (10%), Positives = 74/268 (27%), Gaps = 45/268 (16%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
           AH+  I ++       +  S   DG ++VW     +  +      +    ++ +  H   
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVD 67

Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVL------PPKVFRLLEKPLHEFQGHSSEVLDLS 395
           ++   ++++  +       S     +          K     +  L +          L 
Sbjct: 68  VLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 396 WSKNG------FLLSSSADKTVRLWQVGIDR-------------------CLRVFSHNNY 430
           W  +        L+++    T  +W+                             + + +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 431 VTSVAFNPVDDNYFISGSIDGKVRI-------WEVRRCQVVDYTDIREIVSAVCYCPDGK 483
            TSV  +        +G  +G V+I                   +    + +V + P G 
Sbjct: 187 ATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 484 GGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
              +   + +     + + +  ++    
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSL 272

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 32/232 (13%)

Query: 283 HEGSILTMKFSLDG-----QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
            + S   +K+           L +    GT  +WK             +  P+       
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDL 394
                         I +   +    +   V +            +  H    +S+ +  +
Sbjct: 178 ESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 395 SWSKNGFLLSSSAD------------------KTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
            +S  G LL+ + D                   ++ +        L  F+H+++V S++F
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTD-IREIVSAVCYCPDGK 483
           N        S   DGK+R W+V+  + +     + D I      +     G 
Sbjct: 298 ND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442
            +GH + V+     ++ ++++ + DK +R++     + L   S H+  V ++ +      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG---IVGTMTGNCRFYDI 499
             +SGS D  VR+W++++       +            + K     + G+       + +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 500 KDNQ 503
               
Sbjct: 126 PKES 129

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 9e-10
 Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV 439
                H++     ++  +  +L S ++    ++ +   + +        + + SV F   
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG- 334

Query: 440 DDNYFISGSIDGKVRIW 456
                 +   DG+  + 
Sbjct: 335 -KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 8e-09
 Identities = 28/229 (12%), Positives = 68/229 (29%), Gaps = 19/229 (8%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
           H  S++T     +  Y+ +G +D  +RV+  I  + L      D     L +    +   
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--- 66

Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402
                          L   S    V +                     +  + +    ++
Sbjct: 67  ---------------LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 111

Query: 403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
           ++ S D T+ +W++  +  +      +    V   P ++ YF+         +  V    
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171

Query: 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
            +  +   +    V      K   + +   +  +  I D++  +     
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 220

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RCQVVDYTDIRE 471
                D   +   H+  ++++    V DN  +SGS + +  I+ +R  +    +     +
Sbjct: 267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDAD 325

Query: 472 IVSAVCYCPDG 482
            + +V +    
Sbjct: 326 QIWSVNFKGKT 336

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (137), Expect = 9e-10
 Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 15/134 (11%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
           ++ L    GH+  +  L+ +    L+S S D  +  W            H+N + S+  +
Sbjct: 3   DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNS 55

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
                          +   +  +   +   +            DG   ++          
Sbjct: 56  K--------AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107

Query: 498 DIKDNQLYQQNQIC 511
               + +       
Sbjct: 108 SFTGDIIKSVRLNS 121

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 6e-09
 Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPV 439
                 + +  +    +   + + S D  + ++ V    + ++  + H + V ++ +   
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268

Query: 440 DDNYFISGSIDGKVRIWEV 458
             +  +S   D  ++ W V
Sbjct: 269 -PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 1e-07
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
            K +     H   V +L W     L+SS AD  ++ W V
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM 290
           ++      G+   +  +  +  G     + ++ VK+  + + +L       AH+  +  +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------AHKDGVNNL 264

Query: 291 KFSLDGQYLASGGEDGTVRVWKVI 314
            +      L S G D  ++ W V+
Sbjct: 265 LWETPS-TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)

Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
           +    H   I  +  +     L SG  DG +  W  
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSS 38

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 17/187 (9%), Positives = 49/187 (26%), Gaps = 8/187 (4%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-----VQDTDPSCLYFTIN 337
               +  M+ + DG    +G +   + V        L   +         D    +   +
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
              +   +       D  +    +  L   +      +  +    EF   +        S
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD--LKTGKTHTQEFADLTELYFTGLRS 260

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
                        +  + +   + ++  + ++    VAF+    +    G     + ++ 
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFN 319

Query: 458 VRRCQVV 464
               + V
Sbjct: 320 PDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 13/252 (5%), Positives = 51/252 (20%), Gaps = 25/252 (9%)

Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK--------------------- 312
                       S+ +   S DG+ + +                                
Sbjct: 78  ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137

Query: 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372
           V          +         +        + +   K     T +L   +        P 
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY----TVALPLRNWNRKGYSAPD 193

Query: 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT 432
           V           +      +           ++          +   +       +    
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG 492
                    +      +  ++  +++++ +++   ++      V +   G    +G    
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 493 NCRFYDIKDNQL 504
           +   ++    + 
Sbjct: 314 DLAVFNPDTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
              + +   + F   G  L  GG    + V+     E++    +   D S
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 9e-09
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKV 453
                 + S+SADKT+++W V   +  +            +          +S S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305

Query: 454 RIWE 457
               
Sbjct: 306 NFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (129), Expect = 9e-09
 Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 2/122 (1%)

Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449
            + L  +  G  +      +V    VG      +++ H++  T    +P    Y  SG +
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78

Query: 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509
            G VRIW+  +   +  T I      V               G  R              
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 510 IC 511
             
Sbjct: 139 NG 140

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 24/238 (10%), Positives = 58/238 (24%), Gaps = 6/238 (2%)

Query: 269 RELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD 328
             + SL   + +  H       K S  G Y ASG   G VR+W   +   +    +    
Sbjct: 43  VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 102

Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
                 + +  S+ I    +  +      L  +      +                    
Sbjct: 103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 162

Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS 448
               D +              T       +         + + ++     +     + G+
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222

Query: 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
             G      ++                  + PDG      +     + +++   ++ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGL------TWSPDGTKIASASADKTIKIWNVATLKVEK 274

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 15/187 (8%), Positives = 50/187 (26%), Gaps = 10/187 (5%)

Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-----SCLYFTIN 337
               I  + ++ DG  L   G D  V   +             + +          +  +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
             S ++       + D   +   +     + +  +   +  +   E +         + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVN 249

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
                   +    +  + +  +  ++     +   SV  +  D +    G   G +  ++
Sbjct: 250 PAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYD 307

Query: 458 VRRCQVV 464
               +  
Sbjct: 308 AETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
           +    S  ++  S DG  +  GG  G +  +     E+    D+
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 5/82 (6%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           ++L+ +    + +         +V                P     + + +    +   +
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 458 VRRCQVVDYTDIREIVSAVCYC 479
           +   + +   D+      V   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSL 84

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 380 PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV--FSHNNYVTSVAFN 437
             HE  G  +     +         ++    +    +             + +  S A N
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249

Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
           P       +      +  +++ +   +    +     +V    DG    +G   G+   Y
Sbjct: 250 P---AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

Query: 498 DIKDNQL 504
           D +  + 
Sbjct: 307 DAETLEK 313

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 20/190 (10%), Positives = 45/190 (23%), Gaps = 4/190 (2%)

Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
               +             DG         +GT  +         D F +     S     
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395
           +   +    I          K L     LT             + +      + + + L 
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA--YHRALDRIYLL 266

Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR 454
             +       +A + V +        L  F   + + S+  +  +        + D  + 
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLY 326

Query: 455 IWEVRRCQVV 464
           I +    + +
Sbjct: 327 IHDAESGEEL 336

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 22/234 (9%), Positives = 60/234 (25%), Gaps = 20/234 (8%)

Query: 285 GSILTMKFSLDGQYLA----------SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF 334
           G +     + DG ++A           G     V V+  +              P    F
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----DIELPDAPRF 102

Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
            +     +  +  D + +   +     +     +      R+L+ P       ++     
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162

Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
              ++G L   +               +        +   A++       +  +  GK+ 
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEI--THTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIH 219

Query: 455 IWEV---RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505
             ++       +     + E   A  + P G   +      +  +  +     +
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
             N F ++      + L      + ++V      V     +     Y +    D ++ + 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMI 88

Query: 457 EVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510
           ++   +      +    + R + S+     + +  I G        + I D +  +  QI
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMDGETLEPKQI 146

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 432 TSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
                +    N F ++    G++ + +    ++V   D    V        G+  +V   
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR 81

Query: 491 TGNCRFYDIKDNQLYQQNQI 510
                  D+   +  +  +I
Sbjct: 82  DARIDMIDLWAKEPTKVAEI 101

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 11/185 (5%), Positives = 34/185 (18%), Gaps = 7/185 (3%)

Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
               +      S      AS           V           Q+            +  
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLV 226

Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
                   +           + +       K                +    +  +    
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286

Query: 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY--FISGSIDGKVRIWEVR 459
               +A +        + +     S+ +   ++     D     + + +    + I++  
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345

Query: 460 RCQVV 464
             Q  
Sbjct: 346 SDQDQ 350

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 8/77 (10%), Positives = 22/77 (28%)

Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
           ++S    + +  V  ++        +       +P     +++ +    V I +     V
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 464 VDYTDIREIVSAVCYCP 480
           +           V   P
Sbjct: 67  IATVPAGSSPQGVAVSP 83

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 7/56 (12%), Positives = 17/56 (30%)

Query: 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465
           TV +   G ++             +A  P     +++ S    V + +     +  
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 8/116 (6%)

Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
           +N F ++      + L          V      V     +     Y      DGKV + +
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMID 89

Query: 458 VR--RCQVVD----YTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQLYQ 506
           +       V      ++ R I ++     + K  I            D +  +  +
Sbjct: 90  LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 11/119 (9%), Positives = 35/119 (29%), Gaps = 8/119 (6%)

Query: 404 SSSADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-- 458
           +S   + + +W +   G     +V      V  +  +P     ++    + +V  + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 459 --RRCQVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514
                     + +   ++ +     G+   +     GN     ++D        +    
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	531
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.98
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.56
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.42
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.41
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.3
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.05
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.95
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.85
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.77
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.64
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.62
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.39
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.17
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.06
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.59
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.45
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.25
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.16
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.15
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.91
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.41
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.15
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.6
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.56
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.53
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.51
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.49
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.86
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.67
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.65
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.41
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.54
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	86.51
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.02

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-33  Score=276.04  Aligned_cols=265  Identities=16%  Similarity=0.185  Sum_probs=217.4

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      .|...|.+++|+|+|++||+|+ ||.|+|||+......  .........+|.+.|.+|+|+|+|++|++|+.||+|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~--~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc--ceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            4678889999999999999997 799999999865432  1122234568999999999999999999999999999999


Q ss_pred             cccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          313 VIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       313 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      +....  ....+..+...+.++.+.++.                ...+.++.+..+.+|+....    +......+|...
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~  185 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDS----------------KVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDG  185 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTS----------------SEEEEEETTSCEEEEETTTT----EEEEEECCCSSC
T ss_pred             cccccccccccccccccccccccccccc----------------cccccccccccccccccccc----cccccccccccc
Confidence            87543  333344444434344433322                12234556667777776553    346677889999


Q ss_pred             eeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC
Q 009614          391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI  469 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~  469 (531)
                      |.+++|++++ .+++++.|+.|++||+++++.+..+.|...|++++|+| ++++|++|+.|+.|++||+.+++......|
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  264 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLH  264 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEECCC
T ss_pred             cccccccccccccccccccccccccccccceeecccccccceEEEEEcc-cccccceecccccccccccccccccccccc
Confidence            9999999999 99999999999999999999999999999999999999 999999999999999999999999989999


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       470 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ...|++++|+|+|++|++|+.||.|++||+.+++.+.+..         +...|++++|+|
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~s~  316 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISV  316 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSSCEEEEEECT
T ss_pred             ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---------CCCCEEEEEEeC
Confidence            9999999999999999999999999999999998876543         246889999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-32  Score=268.99  Aligned_cols=260  Identities=16%  Similarity=0.222  Sum_probs=203.6

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      ..+++.+|.+.|.+++|+|++++||+|+.||.|+|||+.+..       ..+.+.+|..+|++++|+|++++|++|+.|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-------EEEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-------eEEEEecccccEEeeEeeccceeeeeecccc
Confidence            345678899999999999999999999999999999998543       3346788999999999999999999999999


Q ss_pred             cEEEEEcccCccccc----eecCCCCCeeEEEeecCC-------cceeeeeccc-----------c-------ccccccc
Q 009614          307 TVRVWKVIEHERLDG----FDVQDTDPSCLYFTINHL-------SQLIPIDVDK-----------E-------KIDKTKS  357 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----------~-------~~~~~~~  357 (531)
                      .+++|+.........    +..+..............       ..........           .       .......
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            999999866543222    222222111111111100       0000000000           0       0011223


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEE
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS  433 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~s  433 (531)
                      +.+..++.+.+|+...    .+++..+.+|...|++++|+|++ +|++|+.|+.|++||+.....+..+.   +...|++
T Consensus       200 ~~~~~d~~v~i~d~~~----~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         200 VSGACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEETTTEEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEeecCceEEEEECCC----CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            5567788888888765    34577889999999999999999 99999999999999999999888774   6778999


Q ss_pred             EEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       434 v~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      ++|+| ++++|++|+.||.|+|||+.+++.+ .+.+|...|++++|+|++++|++|+.||.|+|||
T Consensus       276 ~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999 9999999999999999999998887 4788999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-31  Score=262.62  Aligned_cols=247  Identities=16%  Similarity=0.228  Sum_probs=199.8

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccC
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH  316 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~  316 (531)
                      ....++++|+|+.||.+. ++.|.+|++...       ...+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~-------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCS-------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCC-------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            344589999999999885 677999999743       233467899999999999999999999999999999999887


Q ss_pred             ccc--cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEE
Q 009614          317 ERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL  394 (531)
Q Consensus       317 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l  394 (531)
                      ...  ..+..+...+.++.|.+.....+. .             ....+..+.+|+...    .++...+.+|...|+++
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~-------------~~~~~~~~~v~~~~~----~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAA-V-------------GEGRERFGHVFLFDT----GTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEE-E-------------ECCSSCSEEEEETTT----CCBCBCCCCCSSCEEEE
T ss_pred             ccccccccccccCcccccccccccccccc-c-------------ccccccccccccccc----ccccccccccccccccc
Confidence            654  335556666667766554322111 1             112233344554443    24466788999999999


Q ss_pred             EEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE------
Q 009614          395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD------  465 (531)
Q Consensus       395 ~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~------  465 (531)
                      +|+|++  .|++|+.|+.|++||++++++...+. |...|+++.|+| ++++|++++.|+.|++||+.++..+.      
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCc-cccccccccccccccccccccccccccccccc
Confidence            999988  58899999999999999999888885 899999999999 99999999999999999999887653      


Q ss_pred             --ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          466 --YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       466 --~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                        ..+|...|++++|+|++++|++|+.||.|+|||+++++++..++.
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence              235778999999999999999999999999999999999887654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.7e-30  Score=249.33  Aligned_cols=266  Identities=20%  Similarity=0.294  Sum_probs=224.9

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|.+.|.+++|+|++++||+|+.||+|+|||+.+..       ..+++.+|.+.|++++|+|++.++++++.++.+.
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            478899999999999999999999999999999998543       3356889999999999999999999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCC
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS  389 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  389 (531)
                      +|+.........+..+.....++.+.++..                ..+..+.++.+.+|+...    .+.+..+.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~  144 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGD----------------HIVSASRDKTIKMWEVQT----GYCVKTFTGHRE  144 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSS----------------EEEEEETTSEEEEEETTT----CCEEEEEECCSS
T ss_pred             cccccccccccccccccccceeeeccCCCc----------------eEEeeccCcceeEeeccc----ceeeeEEccCCC
Confidence            999988877666665555555555544332                123455677788887654    345778889999


Q ss_pred             CeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeC-------------------CCCEEEEEe
Q 009614          390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-------------------DDNYFISGS  448 (531)
Q Consensus       390 ~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~-------------------d~~~l~sgs  448 (531)
                      .+.+++|+|++ +|++++.|+.|++|++.+++.+..+. |...+.+++|+|.                   .+.++++++
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            99999999999 99999999999999999999988885 8889999999873                   245799999


Q ss_pred             CCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEE
Q 009614          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ  527 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~  527 (531)
                      .|+.|++||+.+++++ .+.+|...|++++|+|++++|++|+.||.|+|||+.+++++..++        .|...|++++
T Consensus       225 ~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~h~~~V~~~~  296 (317)
T d1vyhc1         225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------AHEHFVTSLD  296 (317)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------CCSSCEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--------CCCCCEEEEE
Confidence            9999999999999887 478899999999999999999999999999999999998877654        2346899999


Q ss_pred             Eee
Q 009614          528 VVK  530 (531)
Q Consensus       528 f~p  530 (531)
                      |+|
T Consensus       297 ~s~  299 (317)
T d1vyhc1         297 FHK  299 (317)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=1.1e-30  Score=257.30  Aligned_cols=245  Identities=17%  Similarity=0.190  Sum_probs=201.1

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC--CCcE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTV  308 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I  308 (531)
                      +.+|.+.+.+++|+|+|++||+|+.||.|+||++.......     ...+.+|.++|.+|+|+|++++|++++.  +..+
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-----EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-----ccccccccCccccccccccccccccccccccccc
Confidence            45677889999999999999999999999999998654332     2357889999999999999999999986  4669


Q ss_pred             EEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC
Q 009614          309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS  388 (531)
Q Consensus       309 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  388 (531)
                      +||++.+++....+..+...+.++.|.+.....               .++++.++.+.+|+.+..    +....+.+|.
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~---------------l~sgs~d~~i~i~d~~~~----~~~~~~~~~~  189 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR---------------IISGSDDNTVAIFEGPPF----KFKSTFGEHT  189 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE---------------EEEEETTSCEEEEETTTB----EEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccceee---------------eccccccccccccccccc----cccccccccc
Confidence            999999998888887777777777766543322               234566778888887654    3467788899


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      ..|+++.|+|++ +|++++.|+.|++||+.++..+..+.        |...|++++|+| ++++|++|+.||.|+|||++
T Consensus       190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECC
Confidence            999999999999 99999999999999999998887763        788999999999 99999999999999999999


Q ss_pred             CCeEEE-ecCCCC-ceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          460 RCQVVD-YTDIRE-IVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       460 ~~~~~~-~~~~~~-~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +++++. +..+.. ....+.+.+++.+|++++.||.|++||++
T Consensus       269 t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999875 433332 22334455566789999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=256.52  Aligned_cols=239  Identities=17%  Similarity=0.235  Sum_probs=203.1

Q ss_pred             eeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~  313 (531)
                      |...+.+++|+|++++|++|+.||.|++|++......     ....+.+|...|.+++|+|++.+|++++.|+.|++|++
T Consensus        96 h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEEcCCCCEEEEeecccccccccccccccc-----cccccccccccccccccccccccccccccccccccccc
Confidence            4566788999999999999999999999998754322     23457889999999999999999999999999999999


Q ss_pred             ccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeE
Q 009614          314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD  393 (531)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  393 (531)
                      .+++.......+...+.++.+.+...                ..+.++.++.+.+|+.+...    .+.. ..|...|.+
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~----------------~~~~~~~d~~v~i~d~~~~~----~~~~-~~~~~~i~~  229 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGT----------------KLWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFS  229 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTE----EEEE-EECSSCEEE
T ss_pred             cccccccccccccccccccccccccc----------------ccccccccccccccccccce----eecc-cccccceEE
Confidence            99887777766666666666544332                12344567778888765532    2333 358899999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc
Q 009614          394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI  472 (531)
Q Consensus       394 l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~  472 (531)
                      ++|+|++ +|++++.|+.|++||++++.......|...|++++|+| ++++|++|+.||.|++||+.+++.+....|...
T Consensus       230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  308 (337)
T d1gxra_         230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEEcccccccceeccccccccccccccccccccccccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEccCCCC
Confidence            9999999 99999999999999999999888888999999999999 999999999999999999999999888888999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          473 VSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       473 v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                      |++++|+|++++|++|+.||+|+|||+
T Consensus       309 v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         309 VLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.9e-30  Score=259.39  Aligned_cols=243  Identities=14%  Similarity=0.142  Sum_probs=188.0

Q ss_pred             eccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 009614          235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI  314 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~  314 (531)
                      .+++.|++|+|+|++||+|+.+|.|+||+......     .....+++|.++|++|+|+|++++|++|+.|++|+|||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            36788999999999999999999999999865332     2345688999999999999999999999999999999998


Q ss_pred             cCccccce--ecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          315 EHERLDGF--DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       315 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      ++.....+  ..+...+.++.|.++...                .+.++.++.+.+|.................|...|.
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~----------------l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKK----------------FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSE----------------EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             cccccccccccccccccccccccccccc----------------ceeecccCcceeeeeecccccccccccccccccccc
Confidence            77644333  334445566666554321                233445566666654332222223445567899999


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCC------------------eEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCe
Q 009614          393 DLSWSKNG-FLLSSSADKTVRLWQVGID------------------RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGK  452 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~------------------~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~  452 (531)
                      +++|+|++ +|++|+.|++|++|++...                  +.+... .|...|++++|+| ++++|++++.|+.
T Consensus       146 ~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~  224 (371)
T d1k8kc_         146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDST  224 (371)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTE
T ss_pred             cccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCc
Confidence            99999999 9999999999999998643                  223333 3888999999999 9999999999999


Q ss_pred             EEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          453 VRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       453 I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      |++||+.+++.+ .+..|..+|.+++|+||+++|++|. |+.+++|...
T Consensus       225 i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             ceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            999999998776 4778889999999999998777655 7776665543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=253.95  Aligned_cols=266  Identities=20%  Similarity=0.265  Sum_probs=201.9

Q ss_pred             eeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccc-----------cccceEEcccCCCEEEEEEccCCCEEEE
Q 009614          233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-----------LYTGQEFLAHEGSILTMKFSLDGQYLAS  301 (531)
Q Consensus       233 ~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~Las  301 (531)
                      .|.+.|.+++|+|+|++||+|+ |+.|+||++.+......-           ........+|...|++|+|+|+|++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            5778999999999999999997 899999999865432110           0111224568889999999999999999


Q ss_pred             EeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcce
Q 009614          302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL  381 (531)
Q Consensus       302 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (531)
                      |+.||.|++|+..+++....+..+...+.++.+.+...                ..+.++.++.+.+|+.....    ..
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------~~~~~~~~~~i~~~d~~~~~----~~  198 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----------------KLVSGSGDRTVRIWDLRTGQ----CS  198 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEETTTTE----EE
T ss_pred             cccccccccccccccccccccccccccccccccccccc----------------cccccccceeeeeeeccccc----cc
Confidence            99999999999999888777776666665555543322                22345567778888766532    23


Q ss_pred             eEeecCCCCeeEEEEcC-CC-eEEEEeCCCcEEEEECCCCeEEEEee--------cCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          382 HEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       382 ~~~~~h~~~I~~l~~sp-~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--------h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                      .... +.....++.+.+ ++ +|++++.|+.|++||+.++..+..+.        |...|++++|+| ++++|++|+.||
T Consensus       199 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~  276 (388)
T d1erja_         199 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR  276 (388)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             cccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCC
Confidence            3333 444555566665 55 99999999999999999998877663        788999999999 999999999999


Q ss_pred             eEEEEeCCCCeE-------------EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          452 KVRIWEVRRCQV-------------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       452 ~I~Iwd~~~~~~-------------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                      .|++||+.++..             .....|...|++++|+|+|++|++|+.||.|++||+.+++++..++.        
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~--------  348 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--------  348 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--------
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC--------
Confidence            999999986532             23566788999999999999999999999999999999998876542        


Q ss_pred             CCceeeeEEEe
Q 009614          519 PGKRITGFQVV  529 (531)
Q Consensus       519 ~~~~It~l~f~  529 (531)
                      |...|++++++
T Consensus       349 H~~~V~~~~~~  359 (388)
T d1erja_         349 HRNSVISVAVA  359 (388)
T ss_dssp             CSSCEEEEEEC
T ss_pred             CCCCEEEEEEe
Confidence            34567777654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.8e-28  Score=239.27  Aligned_cols=276  Identities=18%  Similarity=0.269  Sum_probs=197.4

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      ++.+|.+.+.+ ++++++++||+|+.||+|+|||+.+..       ..+++.+|.++|++|+|+|+ .+|++|+.||+|+
T Consensus         7 tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~   77 (355)
T d1nexb2           7 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVR   77 (355)
T ss_dssp             EEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEE
T ss_pred             EECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC-CEEEEEecccccc
Confidence            56778777643 456678999999999999999987543       34568999999999999985 5899999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEEEeecCC----------cceeeeecccccc---------------------------
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLYFTINHL----------SQLIPIDVDKEKI---------------------------  352 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---------------------------  352 (531)
                      +|++..........................          ..+..+.......                           
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            999988776554443333222222211111          1111111111000                           


Q ss_pred             ------------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCC
Q 009614          353 ------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID  419 (531)
Q Consensus       353 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~  419 (531)
                                  .....+.+..+..+.+|+...    .+.+....++...+.++.++|++ ++++++.|++|++||++++
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeccccccccccccceeeeecccceeeeeeccc----ccceeeeeccccccccccccccceeeecccccceEEeeecccc
Confidence                        001122334455555665543    34466777889999999999998 9999999999999999999


Q ss_pred             eEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEE-EEccCCCEEEEEeCCCcEEEE
Q 009614          420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAV-CYCPDGKGGIVGTMTGNCRFY  497 (531)
Q Consensus       420 ~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~dg~I~iw  497 (531)
                      .++..+. |...|++++|+|   ++|++|+.||.|++||+.+...... .|...+.++ ++++++++|++| .||.|+||
T Consensus       234 ~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vw  308 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTFYVSDNILVSG-SENQFNIY  308 (355)
T ss_dssp             CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEE-EECTTCCCCCEEEECSSEEEEE-ETTEEEEE
T ss_pred             cccccccccccccccccccc---ceeeeeecccccccccccccceecc-cccCCceEEEEEcCCCCEEEEE-eCCEEEEE
Confidence            9998886 899999999865   7999999999999999998875533 344444444 567777766665 58999999


Q ss_pred             eCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          498 DIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       498 d~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      |+++++++...       ...+...|++++|+|
T Consensus       309 d~~tg~~~~~~-------~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         309 NLRSGKLVHAN-------ILKDADQIWSVNFKG  334 (355)
T ss_dssp             ETTTCCBCCSC-------TTTTCSEEEEEEEET
T ss_pred             ECCCCCEEEEE-------ecCCCCCEEEEEEcC
Confidence            99999876421       233557899999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=247.95  Aligned_cols=245  Identities=22%  Similarity=0.299  Sum_probs=187.4

Q ss_pred             eeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       232 ~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      ..+...+.+++|+|++++|++|+.||.|++|+......       ...+.+|...|.++.|++++..+++|+.++.|++|
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCCEEEEEECCCCCcceeccccccccccccccccc-------ccccccccccccccccccccccccccccceeeeee
Confidence            34556778899999999999999999999999875432       34578899999999999999999999999999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc---CcceeEeecCC
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL---EKPLHEFQGHS  388 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~  388 (531)
                      |+.+............ ..++.+.+...               ...+.++.++.+.+|+.......   ........+|.
T Consensus       191 d~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~  254 (388)
T d1erja_         191 DLRTGQCSLTLSIEDG-VTTVAVSPGDG---------------KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK  254 (388)
T ss_dssp             ETTTTEEEEEEECSSC-EEEEEECSTTC---------------CEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred             eccccccccccccccc-cccccccCCCC---------------CeEEEEcCCCeEEEeecccCccceeeccccccccCCC
Confidence            9988776554443322 22222222211               12234556677777776543322   12233456799


Q ss_pred             CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEE------------E-EeecCCceEEEEEeeCCCCEEEEEeCCCeEE
Q 009614          389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL------------R-VFSHNNYVTSVAFNPVDDNYFISGSIDGKVR  454 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l------------~-~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~  454 (531)
                      ..|.+++|+|++ +|++++.|+.|++||+.++...            . ...|...|++++|+| ++++|++|+.||.|+
T Consensus       255 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~  333 (388)
T d1erja_         255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVL  333 (388)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEE
Confidence            999999999999 9999999999999999765432            1 223889999999999 999999999999999


Q ss_pred             EEeCCCCeEE-EecCCCCceEEEEE------ccCCCEEEEEeCCCcEEEEeCC
Q 009614          455 IWEVRRCQVV-DYTDIREIVSAVCY------CPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       455 Iwd~~~~~~~-~~~~~~~~v~~v~~------spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +||+.+++++ .+.+|...|+++++      +|++++|++|+.||+|+||+++
T Consensus       334 vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999887 58889999999975      5789999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=5.4e-28  Score=234.89  Aligned_cols=243  Identities=13%  Similarity=0.103  Sum_probs=183.3

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEE-cccCCCEEEEEEccCCCEEEEEeCCCc
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGT  307 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~  307 (531)
                      +.+.+|...|.+++|+|++++|++|+.||.|++||+.++...       +.+ .+|...|++++|+|+|+ +++++.|+.
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-------~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-------RVFPDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------ECSSCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------EEEcCCCCCcEEEEEeeccce-eecccceee
Confidence            457789999999999999999999999999999999865432       122 46999999999999997 556778999


Q ss_pred             EEEEEcccCccccc---eecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe
Q 009614          308 VRVWKVIEHERLDG---FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF  384 (531)
Q Consensus       308 I~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (531)
                      +++|++........   .......+..+.+.++..  ++               ....+..+.+|+...      .... 
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~---------------~~~~~~~i~~~~~~~------~~~~-  133 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IA---------------VAACYKHIAIYSHGK------LTEV-  133 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CE---------------EEEESSEEEEEETTE------EEEE-
T ss_pred             EEEeccCCccccccccccccccccccccccccccc--cc---------------ccccccccccccccc------cccc-
Confidence            99999865432111   111222233333332221  11               112233455554321      1111 


Q ss_pred             ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEE--EeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCC
Q 009614          385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC  461 (531)
Q Consensus       385 ~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~--~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~  461 (531)
                       .....+.+++|+|++ +|++++.|+.|++||+.+++...  ...|...|++++|+| ++.+|++++.|+.|++||+.++
T Consensus       134 -~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         134 -PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             -ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGT
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence             234567899999999 99999999999999998887654  445999999999999 9999999999999999999887


Q ss_pred             eEE----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q 009614          462 QVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY  505 (531)
Q Consensus       462 ~~~----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~  505 (531)
                      ...    .+..|...|++++|+|++++|++|+.||.|+|||+.++...
T Consensus       212 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            655    35668899999999999999999999999999999887543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-27  Score=229.44  Aligned_cols=280  Identities=18%  Similarity=0.353  Sum_probs=201.7

Q ss_pred             ccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       227 ~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      ....+.+|.+.|.+ +++++|++||+|+.||.|+|||+.+.+       ..+++.+|.+.|++++|+|+  +|++|+.|+
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            44467788888765 578889999999999999999997543       34568899999999999874  999999999


Q ss_pred             cEEEEEcccCccccceecCCCCCeeEEEee------cCCcceeeeeccccc----------------cccccccccCCCc
Q 009614          307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTI------NHLSQLIPIDVDKEK----------------IDKTKSLRKSSDL  364 (531)
Q Consensus       307 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~  364 (531)
                      ++++|+........................      .....+..+......                ......+.++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999999877665444333322221111110      001111111111110                0112234556677


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCC
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN  442 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~  442 (531)
                      .+.+|+....    ..+..+.+|...+..+.+  ++ +|++++.|+.|++||++.++++..+. |...+.++.+++   +
T Consensus       158 ~i~~~d~~~~----~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~  228 (342)
T d2ovrb2         158 MVKVWDPETE----TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---N  228 (342)
T ss_dssp             CEEEEEGGGT----EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---T
T ss_pred             eEEEeecccc----eeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---C
Confidence            7777776543    346778888877776665  45 99999999999999999999988886 888898888765   6


Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEE-ec---CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccC
Q 009614          443 YFISGSIDGKVRIWEVRRCQVVD-YT---DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL  518 (531)
Q Consensus       443 ~l~sgs~Dg~I~Iwd~~~~~~~~-~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~  518 (531)
                      +|++|+.|+.|++||+...+... +.   .|...+.++.+  +++++++|+.||.|+|||++++++++++.....   ..
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~---~~  303 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---GG  303 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTT---GG
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccC---CC
Confidence            99999999999999999887653 32   34556666655  567999999999999999999999887754322   23


Q ss_pred             CCceeeeEEEee
Q 009614          519 PGKRITGFQVVK  530 (531)
Q Consensus       519 ~~~~It~l~f~p  530 (531)
                      +...|++++|+|
T Consensus       304 ~~~~v~~v~~s~  315 (342)
T d2ovrb2         304 SGGVVWRIRASN  315 (342)
T ss_dssp             GTCEEEEEEECS
T ss_pred             CCCCEEEEEECC
Confidence            457899999987

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.9e-27  Score=231.65  Aligned_cols=251  Identities=18%  Similarity=0.214  Sum_probs=185.8

Q ss_pred             ccceeeeCCCCeEEeeecCC-eEEEEeCCCCcccccccccceEEcccC-CCEEEEEEcc--CCCEEEEEeCCCcEEEEEc
Q 009614          238 HGSATLKPGDHELTLGQRMR-RVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSL--DGQYLASGGEDGTVRVWKV  313 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg-~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~  313 (531)
                      ..+++|+|++..+|.++.+. .|+.|+.....     ......+.+|. ..|++++|+|  +|++||+|+.||+|+|||+
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-----~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-----VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCS-----SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-----ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            45689999999999886543 34555543221     22334577774 6899999998  6789999999999999999


Q ss_pred             ccCcccccee--------cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          314 IEHERLDGFD--------VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       314 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ..+.....+.        .+...+.++.|.++....+.              ...+.+....+|....    .+.+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~  156 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV--------------VGEGRDNFGVFISWDS----GNSLGEVS  156 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE--------------EECCSSCSEEEEETTT----CCEEEECC
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccce--------------eeccccceEEEEeecc----cccceeee
Confidence            8776554433        22333444444333221111              1222333444444332    34577888


Q ss_pred             cCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee----cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCC
Q 009614          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR  459 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~----h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~  459 (531)
                      +|...|.+++|+|++  .+++++.|+.|++||+...+....+.    |...|++++|+|+.+.+|++++.|+.|++||++
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            999999999999988  67889999999999999887766653    678899999999557899999999999999999


Q ss_pred             CCeEEE-ecCCCCceEEEEEc---cCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          460 RCQVVD-YTDIREIVSAVCYC---PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       460 ~~~~~~-~~~~~~~v~~v~~s---pdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      +++.+. +.+|...+..+.|+   |+|++|++++.||.|+|||+++++++..+...
T Consensus       237 ~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            998874 56676666555555   68999999999999999999999998877643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.1e-26  Score=228.19  Aligned_cols=241  Identities=20%  Similarity=0.361  Sum_probs=186.3

Q ss_pred             cceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccccc---
Q 009614          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI---  352 (531)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  352 (531)
                      ..++|+||.++|++|+|+|++++||||+.||+|+|||+.+++.+..+..+...+.++.+.++....+.+ ..+....   
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~~i~~~~  125 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG-GLDNICSIYN  125 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEE-ETTCCEEEEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeee-cccceeeccc
Confidence            446799999999999999999999999999999999999999999998888888888887654322221 1111000   


Q ss_pred             --------ccccccc-------------------cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEE
Q 009614          353 --------DKTKSLR-------------------KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS  404 (531)
Q Consensus       353 --------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s  404 (531)
                              .....+.                   ...+.....+...    ..........+...+....+.+.+ ++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETT----TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccc----cccccccccccceeEeeeccccccceeEE
Confidence                    0000000                   0011111111111    112234455677788899998888 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE---ecCCCCceEEEEEcc
Q 009614          405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCP  480 (531)
Q Consensus       405 ~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~---~~~~~~~v~~v~~sp  480 (531)
                      ++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||+.....+.   ...+...|++++|+|
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence            9999999999999999999886 899999999999 99999999999999999999987764   345667899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       481 dg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ++++|++|+.||.|+|||+.+++++..++        .|...|++++|+|
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~H~~~V~~l~~s~  322 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLA--------GHDNRVSCLGVTD  322 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECT
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEc--------CCCCCEEEEEEeC
Confidence            99999999999999999999999887553        2456899999987

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.4e-27  Score=226.77  Aligned_cols=240  Identities=18%  Similarity=0.302  Sum_probs=202.5

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV  310 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i  310 (531)
                      +..|...+.+++++|++.+++++..++.+.+|+.......       ..+.+|...+.++.|+|++++|++++.|+.+++
T Consensus        55 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (317)
T d1vyhc1          55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI-------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM  127 (317)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE-------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EeCCCCcEEEEeeecccccccccccccccccccccccccc-------cccccccccceeeeccCCCceEEeeccCcceeE
Confidence            4456677888999999999999999999999998754432       346789999999999999999999999999999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      ||+.+++....+..+.....++.+.+...                ..+.++.++.+.+|+....    .....+.+|...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~d~~v~~~~~~~~----~~~~~~~~~~~~  187 (317)
T d1vyhc1         128 WEVQTGYCVKTFTGHREWVRMVRPNQDGT----------------LIASCSNDQTVRVWVVATK----ECKAELREHRHV  187 (317)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECTTSS----------------EEEEEETTSCEEEEETTTC----CEEEEECCCSSC
T ss_pred             eecccceeeeEEccCCCcceeeecccCCC----------------EEEEEeCCCeEEEEeeccc----eeeEEEecCCCC
Confidence            99999988887777666666655544321                2234566777777776553    346677888889


Q ss_pred             eeEEEEcCCC---------------------eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe
Q 009614          391 VLDLSWSKNG---------------------FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS  448 (531)
Q Consensus       391 I~~l~~sp~~---------------------~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs  448 (531)
                      +.++.|+|++                     .+++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++|+
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~  266 (317)
T d1vyhc1         188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCA  266 (317)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEE
T ss_pred             ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEE
Confidence            9999887643                     58899999999999999999998886 899999999999 999999999


Q ss_pred             CCCeEEEEeCCCCeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       449 ~Dg~I~Iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      .||.|+|||+.+++++ .+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus       267 ~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999998876 4778999999999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.4e-27  Score=230.93  Aligned_cols=247  Identities=17%  Similarity=0.239  Sum_probs=186.9

Q ss_pred             ccccceeeeC--CCCeEEeeecCCeEEEEeCCCCccccc-ccccceEEcccCCCEEEEEEccCCCEEEEEeC--CCcEEE
Q 009614          236 DRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTVRV  310 (531)
Q Consensus       236 ~~~~s~~fsp--dg~~lasgs~dg~I~vwd~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~i  310 (531)
                      ..+.+++|+|  ++.+||+|+.||+|+||++........ .......+..|.++|.+++|++++++|++++.  ++.+++
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            4567899998  567999999999999999875443221 11222346789999999999999999988764  778999


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      |+..+++.+..+..+...+.++.+.+.....               .+.++.++.+.+|+....... ........|...
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---------------~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~  207 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMR---------------SMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSF  207 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCE---------------EEEEETTTEEEEEETTTBEEE-EEECSSSCTTCC
T ss_pred             Eeecccccceeeeecccccccccccccccce---------------EEEeecccccccccccccccc-eecccccCCCCc
Confidence            9999998888887777777777776544322               234556777888876554432 123335678889


Q ss_pred             eeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEe---eCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN---PVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       391 I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fs---p~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      |.+++|+|++  +|++++.|+.|++||+++++++..+. |...+.++.|+   | ++.+|++++.|+.|+|||+.+++++
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999974  89999999999999999999999886 66666555554   5 7899999999999999999999987


Q ss_pred             E-ecCCCC--ceEEEEEccC-CCEEEEEeCCCcEEEEeC
Q 009614          465 D-YTDIRE--IVSAVCYCPD-GKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       465 ~-~~~~~~--~v~~v~~spd-g~~l~sgs~dg~I~iwd~  499 (531)
                      . +..+..  .+..+++.+. +.+|++++.||.|+|||+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4 333333  3344444432 347899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-26  Score=235.26  Aligned_cols=273  Identities=11%  Similarity=0.095  Sum_probs=185.5

Q ss_pred             ceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEE------cc-CCCEEEEEe
Q 009614          231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------SL-DGQYLASGG  303 (531)
Q Consensus       231 ~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~f------sp-dg~~Lasgs  303 (531)
                      ...|...|.+++++  ++++++|+.|+.|+||+......... .........|...+..+..      +. ++.++++++
T Consensus        10 ~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_          10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENP-KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             SSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCG-GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcc-cceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            34567777777765  46999999999999999875543322 1112223345555443332      21 345788999


Q ss_pred             CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcce--eeeeccccccccccccccCCCceEEEeCCccccc-----
Q 009614          304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL--IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-----  376 (531)
Q Consensus       304 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  376 (531)
                      .||.|++|++........+.........   ........  ..+............+..+.++.+.+|+......     
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLD---SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSC---TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             CCCcEEEEEccCCCceeeeeccccceee---eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999998765543322111000000   00000011  1111222222223345566777787776432111     


Q ss_pred             --c-------CcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-------cCCceEEEEEeeCC
Q 009614          377 --L-------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVD  440 (531)
Q Consensus       377 --~-------~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-------h~~~V~sv~fsp~d  440 (531)
                        .       .........+...+++++|+|+++|++|+.|++|+|||+.+++++..+.       |..+|++|+|+| +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-Q  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-S
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-c
Confidence              0       0112223345667999999999999999999999999999999887663       889999999999 9


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCeEEE-e-------------cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 009614          441 DNYFISGSIDG---KVRIWEVRRCQVVD-Y-------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ  503 (531)
Q Consensus       441 ~~~l~sgs~Dg---~I~Iwd~~~~~~~~-~-------------~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~  503 (531)
                      +++|++|+.|+   .|++||+.+++.+. +             .+|...|++++|+||+++|++|+.||+|+|||+.+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999999987   49999999887653 2             3789999999999999999999999999999999999


Q ss_pred             EEEEeee
Q 009614          504 LYQQNQI  510 (531)
Q Consensus       504 l~~~~~~  510 (531)
                      +++.++.
T Consensus       323 ~~~~l~g  329 (393)
T d1sq9a_         323 RITTLNM  329 (393)
T ss_dssp             EEEEEEC
T ss_pred             EEEEECC
Confidence            9987753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-26  Score=222.34  Aligned_cols=262  Identities=12%  Similarity=0.094  Sum_probs=190.9

Q ss_pred             ccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccC-CCEEEEEeCCCc
Q 009614          229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGT  307 (531)
Q Consensus       229 ~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~  307 (531)
                      .....|.+.|.+++|+|++++||+|+.||+|+|||+.......    ......+|.++|++++|+|+ +.+|++|+.||+
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce----EEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            3456788899999999999999999999999999987543221    11233479999999999986 458999999999


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      |++|++...........................               ..+..+.+..+.+|+.+..............+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~  145 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD---------------KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT---------------EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             eeeeecccccccccccccccccccccccccccc---------------cccccccccccceeeccccccceeeecccccc
Confidence            999999887766555444443333333222221               22445667778888876544433333333333


Q ss_pred             C--CCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe----ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC
Q 009614          388 S--SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR  460 (531)
Q Consensus       388 ~--~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~----~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~  460 (531)
                      .  .....+.+.+.+ .+++++.|+.|++||+.........    .+...+.++.+.|.++..+++++.||.+.+|+...
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            2  234455666666 9999999999999999876543322    35566777777776888999999999999999865


Q ss_pred             Ce---------EEE-------ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          461 CQ---------VVD-------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       461 ~~---------~~~-------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ..         ...       ...|...|++++|+|++++|++|+.||.|+|||+.+++.+.++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence            32         111       23456679999999999999999999999999999998876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.2e-26  Score=221.02  Aligned_cols=250  Identities=12%  Similarity=0.141  Sum_probs=176.0

Q ss_pred             cccccceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC
Q 009614          226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED  305 (531)
Q Consensus       226 ~~~~~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D  305 (531)
                      +.++++.+|...+.+++|+|    |++|+.||+|++|+..+            ...+|...|.+++|++++ .+++++.|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCCC-eEEEEeec
Confidence            34567889999999999987    89999999999999763            235799999999999765 68999999


Q ss_pred             CcEEEEEcccCccccc---eecCCCCCeeEEEeecCCcceeeeecccccc---------------c-cccccccCCCceE
Q 009614          306 GTVRVWKVIEHERLDG---FDVQDTDPSCLYFTINHLSQLIPIDVDKEKI---------------D-KTKSLRKSSDLTC  366 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~  366 (531)
                      ++|++|++...+....   +......  ..... .....+..+.......               . ....+....+..+
T Consensus        67 ~~v~~w~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          67 DTLKVNGITKHEFGSQPKVASANNDG--FTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSS--EEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred             cccccccccccccccceeeeeeccCC--ceEEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeecccccee
Confidence            9999999865442211   1111110  00000 1111111111111100               0 0111122223345


Q ss_pred             EEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--ecCCceEEEEEeeC----
Q 009614          367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV----  439 (531)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~h~~~V~sv~fsp~----  439 (531)
                      .+|+......   .......|.+.+++++|+|++ +|++|+.||.|++||+.+++.+...  .|...|++++|+|.    
T Consensus       144 ~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         144 QVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             EEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeccccce---eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            5665443221   122233477899999999999 9999999999999999998876543  48999999999872    


Q ss_pred             -----CCCEEEEEeCCCeEEEEeCCC-CeEE-EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeC
Q 009614          440 -----DDNYFISGSIDGKVRIWEVRR-CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI  499 (531)
Q Consensus       440 -----d~~~l~sgs~Dg~I~Iwd~~~-~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~  499 (531)
                           ++.+|++|+.|++|+|||+.+ .+.+ .+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                 457899999999999999976 4444 467899999999999987 5889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-25  Score=212.28  Aligned_cols=249  Identities=21%  Similarity=0.364  Sum_probs=178.1

Q ss_pred             ceeeeccccce-eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          231 MARIIDRHGSA-TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       231 ~~~~~~~~~s~-~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      +.++......+ +++++|++||+|+.||.|+|||+.+..       ..+++.+|.++|++|+|  ++++|++|+.||.|+
T Consensus         8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~   78 (293)
T d1p22a2           8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVR   78 (293)
T ss_dssp             EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEeeeec--ccceeeccccccccc
Confidence            44444333333 567899999999999999999987433       44578999999999987  578999999999999


Q ss_pred             EEEcccCccccceecCCCCCeeEE------EeecCCcceeeeeccccc-------------------cccccccccCCCc
Q 009614          310 VWKVIEHERLDGFDVQDTDPSCLY------FTINHLSQLIPIDVDKEK-------------------IDKTKSLRKSSDL  364 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~  364 (531)
                      +|++..+.................      ........+..+......                   .........+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~  158 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR  158 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCC
Confidence            999988765544433222111100      001111111111111000                   0112234556778


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCE
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNY  443 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~  443 (531)
                      .+.+|+....    +++..+.+|...+..+.+++. .+++++.|++|++||+++...+..+. |...+.+  +.+ ++.+
T Consensus       159 ~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~-~~~~  230 (293)
T d1p22a2         159 TIKVWNTSTC----EFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF-DNKR  230 (293)
T ss_dssp             EEEEEETTTC----CEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC-CSSE
T ss_pred             ceeeecCCCC----cEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccceeeeeecccceeeee--ccc-cceE
Confidence            8888877653    457788899999999888644 89999999999999999999988886 6666665  445 7789


Q ss_pred             EEEEeCCCeEEEEeCCC---------CeE-EEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          444 FISGSIDGKVRIWEVRR---------CQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       444 l~sgs~Dg~I~Iwd~~~---------~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      |++|+.||.|+|||+..         ... ..+.+|...|++++|  ++++|++|+.||+|+|||
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            99999999999999753         223 357889999999998  567899999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.6e-25  Score=225.26  Aligned_cols=220  Identities=12%  Similarity=0.139  Sum_probs=177.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc--cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccC
Q 009614          284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS  361 (531)
Q Consensus       284 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (531)
                      ..+|+|++|+|+|++||+|+.||.|+|||+.+++  .+..+..|...+.++.|.++..                ..++++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~----------------~l~s~s   70 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN----------------RIVTCG   70 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT----------------EEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC----------------EEEEEE
Confidence            4789999999999999999999999999998775  4555667777777777766542                224456


Q ss_pred             CCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe-----ecCCceEEEE
Q 009614          362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTSVA  435 (531)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-----~h~~~V~sv~  435 (531)
                      .|+.+.+|+......  .+...+.+|...|.+++|+|++ .|++++.|++|++|++.........     .|...|++++
T Consensus        71 ~D~~i~vWd~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~  148 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  148 (371)
T ss_dssp             TTSCEEEEEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             CCCeEEEEeeccccc--ccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccc
Confidence            778888987654321  2345567899999999999999 9999999999999998765433222     2788999999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEeCCCCe-------------------EEEecCCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 009614          436 FNPVDDNYFISGSIDGKVRIWEVRRCQ-------------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF  496 (531)
Q Consensus       436 fsp~d~~~l~sgs~Dg~I~Iwd~~~~~-------------------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i  496 (531)
                      |+| ++.+|++|+.|+.|++|++....                   ......|...|.+++|+|+|++|++++.||.|++
T Consensus       149 ~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         149 WHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             ccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceE
Confidence            999 99999999999999999986421                   2346678889999999999999999999999999


Q ss_pred             EeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          497 YDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       497 wd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ||+.+++.+..+.        .+...|++++|+|
T Consensus       228 wd~~~~~~~~~~~--------~~~~~v~s~~fs~  253 (371)
T d1k8kc_         228 ADADKKMAVATLA--------SETLPLLAVTFIT  253 (371)
T ss_dssp             EEGGGTTEEEEEE--------CSSCCEEEEEEEE
T ss_pred             Eeeecccceeeee--------cccccceeeeecC
Confidence            9999988876543        2345788999876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=3.9e-24  Score=207.26  Aligned_cols=227  Identities=18%  Similarity=0.190  Sum_probs=173.6

Q ss_pred             ceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCcccccee-cCCCCCeeEEEeecCCcceeeeeccccccccc
Q 009614          277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT  355 (531)
Q Consensus       277 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (531)
                      .+.++||.++|++|+|+|+|++||||+.||+|++||+.+++....+. .+...+.++.+.++.  .+             
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g--~~-------------   69 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--DL-------------   69 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--CE-------------
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc--ee-------------
Confidence            46789999999999999999999999999999999999988776664 344455566655432  12             


Q ss_pred             cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEE
Q 009614          356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA  435 (531)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~  435 (531)
                        +..+.++.+.+|+....... ........|...+.+++++|++.+++++.++.+++|+...   .........+++++
T Consensus        70 --~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~  143 (299)
T d1nr0a2          70 --FTVSWDDHLKVVPAGGSGVD-SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYNSSCVA  143 (299)
T ss_dssp             --EEEETTTEEEEECSSSSSSC-TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSCEEEEE
T ss_pred             --ecccceeeEEEeccCCcccc-cccccccccccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence              23345667777775443221 1223345678889999999999444555567899998542   23334566789999


Q ss_pred             EeeCCCCEEEEEeCCCeEEEEeCCCCeEE--EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeec
Q 009614          436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ  513 (531)
Q Consensus       436 fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~  513 (531)
                      |+| ++++|++|+.||.|++||+.+++..  ....|...|++++|+|++++|++++.||.|++||+.++.......    
T Consensus       144 ~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~----  218 (299)
T d1nr0a2         144 LSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN----  218 (299)
T ss_dssp             ECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC----
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            999 9999999999999999999988765  456788999999999999999999999999999998876554322    


Q ss_pred             ccccCCCceeeeEEEee
Q 009614          514 GKKKLPGKRITGFQVVK  530 (531)
Q Consensus       514 ~~kk~~~~~It~l~f~p  530 (531)
                       ....+...|++++|+|
T Consensus       219 -~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         219 -SWTFHTAKVACVSWSP  234 (299)
T ss_dssp             -CCCCCSSCEEEEEECT
T ss_pred             -cccccccccccccccc
Confidence             1234567899999987

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.5e-22  Score=198.59  Aligned_cols=254  Identities=20%  Similarity=0.233  Sum_probs=169.8

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEE
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR  309 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~  309 (531)
                      .+.+|...|.+++|+|+ .+|++|+.|+.|++|+..........     ....+...+..+.+.+++.++++++.|+.|+
T Consensus        48 ~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  121 (355)
T d1nexb2          48 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF-----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  121 (355)
T ss_dssp             EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE-----CCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred             EEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc-----ccccccccccccccccccceeeeecCCCcEE
Confidence            45567888999999985 58999999999999999865433211     1223344566677889999999999999999


Q ss_pred             EEEcccCccccceecCCC----------CCee-----------EEEeec--------CCcceeeeecccccc--------
Q 009614          310 VWKVIEHERLDGFDVQDT----------DPSC-----------LYFTIN--------HLSQLIPIDVDKEKI--------  352 (531)
Q Consensus       310 iWd~~~~~~~~~~~~~~~----------~~~~-----------~~~~~~--------~~~~~~~~~~~~~~~--------  352 (531)
                      +|++.+............          ....           ......        ....+..++......        
T Consensus       122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  201 (355)
T d1nexb2         122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  201 (355)
T ss_dssp             EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc
Confidence            999977654322211100          0000           001111        011111111111100        


Q ss_pred             ----------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEE
Q 009614          353 ----------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCL  422 (531)
Q Consensus       353 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l  422 (531)
                                .....+.++.++.+.+|+...    ...+..+.+|...|.+++++++ +|++++.||+|++||+++....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         202 DRIYSTIYDHERKRCISASMDTTIRIWDLEN----GELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTT----CCEEEEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccceeeecccccceEEeeeccc----cccccccccccccccccccccc-eeeeeeccccccccccccccee
Confidence                      111234455667777777654    3457788999999999999754 9999999999999999988766


Q ss_pred             EEeecCCceEEE-EEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 009614          423 RVFSHNNYVTSV-AFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD  498 (531)
Q Consensus       423 ~~~~h~~~V~sv-~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd  498 (531)
                      ....+ ..+.++ .++| ++.++++|+ |+.|+|||+++++++.  +.+|...|++++|+|+ .++++++.||.++||-
T Consensus       277 ~~~~~-~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         277 FSYHH-TNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEC-TTCCCCCEEEE-CSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             ccccc-CCceEEEEEcC-CCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            55544 445554 4566 777777665 8999999999998873  5778899999999987 4778889999976654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.8e-23  Score=209.32  Aligned_cols=184  Identities=18%  Similarity=0.294  Sum_probs=142.0

Q ss_pred             CCeEEeeecCCeEEEEeCCCCccccccc-----------ccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 009614          247 DHELTLGQRMRRVRVHPVKKQSRELSSL-----------YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE  315 (531)
Q Consensus       247 g~~lasgs~dg~I~vwd~~~~~~~~~~~-----------~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~  315 (531)
                      +.++++++.||.|++|++..........           ........+...+++++|+|++ +||+|+.||+|+|||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            4678999999999999986432211100           0011123456679999999998 899999999999999988


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ++.+..+.                                                        ....+.+|...|++++
T Consensus       215 ~~~~~~~~--------------------------------------------------------~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         215 LRPLYNFE--------------------------------------------------------SQHSMINNSNSIRSVK  238 (393)
T ss_dssp             TEEEEEEE--------------------------------------------------------CCC---CCCCCEEEEE
T ss_pred             cccccccc--------------------------------------------------------cccccccccceEEEcc
Confidence            77544332                                                        1344678999999999


Q ss_pred             EcCCC-eEEEEeCCCc---EEEEECCCCeEEEEe--------------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEe
Q 009614          396 WSKNG-FLLSSSADKT---VRLWQVGIDRCLRVF--------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE  457 (531)
Q Consensus       396 ~sp~~-~l~s~s~Dg~---V~lwdl~~~~~l~~~--------------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd  457 (531)
                      |+|++ +|++|+.|++   |++||+.+++++..+              .|...|++|+|+| ++++|++|+.|++|+|||
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEE
Confidence            99999 9999999875   999999999988876              3889999999999 999999999999999999


Q ss_pred             CCCCeEEE-ecCCCCceE----EEEEccCCCEEEEE
Q 009614          458 VRRCQVVD-YTDIREIVS----AVCYCPDGKGGIVG  488 (531)
Q Consensus       458 ~~~~~~~~-~~~~~~~v~----~v~~spdg~~l~sg  488 (531)
                      +.+++++. +.+|...|.    .++|+|++..++++
T Consensus       318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99999884 677766554    36667766655544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-21  Score=187.76  Aligned_cols=237  Identities=21%  Similarity=0.337  Sum_probs=170.4

Q ss_pred             cceeeeccccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEE-------------------
Q 009614          230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM-------------------  290 (531)
Q Consensus       230 ~~~~~~~~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l-------------------  290 (531)
                      .+.+|...+.+++|+|+  ++++|+.|+.+++|+.........       ...+...+...                   
T Consensus        52 ~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  122 (342)
T d2ovrb2          52 TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHT-------LYGHTSTVRCMHLHEKRVVSGSRDATLRVW  122 (342)
T ss_dssp             ECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             EEeCCCCCEEEEEeCCC--ccccceecccccccccccccceec-------ccccceeEeeeecccccccccccceeEEEe
Confidence            34557777888899875  999999999999999875433211       11112222211                   


Q ss_pred             -------------------EEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccc
Q 009614          291 -------------------KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK  351 (531)
Q Consensus       291 -------------------~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (531)
                                         .+.+...++++++.|+.|++||+.....+..+..+......  +..               
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~---------------  185 (342)
T d2ovrb2         123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQF---------------  185 (342)
T ss_dssp             ESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEE---------------
T ss_pred             ecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccC---------------
Confidence                               22334445666666777777776665554444333221111  111               


Q ss_pred             cccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEee----c
Q 009614          352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----H  427 (531)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~~----h  427 (531)
                       .....+.++.++.+.+|+....    +++..+.+|...+.+++++++ +|++++.|+.|++||+...+....+.    |
T Consensus       186 -~~~~l~s~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  259 (342)
T d2ovrb2         186 -DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKH  259 (342)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred             -CCCEEEEEeCCCeEEEeecccc----eeeeEecccccceeEEecCCC-EEEEEcCCCEEEEEeccccccccccccccee
Confidence             1123456778888999987653    457788899999999988765 99999999999999999988887774    5


Q ss_pred             CCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-e-----cCCCCceEEEEEccCCCEEEEEeCCCc----EEEE
Q 009614          428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-Y-----TDIREIVSAVCYCPDGKGGIVGTMTGN----CRFY  497 (531)
Q Consensus       428 ~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~-----~~~~~~v~~v~~spdg~~l~sgs~dg~----I~iw  497 (531)
                      ...+.++.++   ++++++|+.||+|+|||+++++++. +     .+|...|++++|+|++.+|++|+.||+    |++|
T Consensus       260 ~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~  336 (342)
T d2ovrb2         260 QSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL  336 (342)
T ss_dssp             SSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             eeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence            6677777775   4799999999999999999998764 2     356778999999999999999999985    9999


Q ss_pred             eCCC
Q 009614          498 DIKD  501 (531)
Q Consensus       498 d~~~  501 (531)
                      |+..
T Consensus       337 Df~~  340 (342)
T d2ovrb2         337 DFDV  340 (342)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            9863

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=3.5e-21  Score=190.27  Aligned_cols=254  Identities=7%  Similarity=-0.016  Sum_probs=185.2

Q ss_pred             eeccccceeeeCCCCeEEeeecCC--eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          234 IIDRHGSATLKPGDHELTLGQRMR--RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~lasgs~dg--~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      |...+.+++|+|||++|++++.+.  .|++|+...+..        +.+..|...|.+++|+|+|++|++++.++.+++|
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  112 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  112 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--------EEeeCCCceEEeeeecccccccceeccccccccc
Confidence            456677899999999998766553  799999986542        2466899999999999999999999999999999


Q ss_pred             EcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCe
Q 009614          312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV  391 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I  391 (531)
                      ++.+++....+..+......+.+.++....++......      ....+..+..+.+|+...     .....+..|...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~------~~~~~~~~~~~~v~d~~~-----~~~~~~~~~~~~~  181 (360)
T d1k32a3         113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH------GETDGYVMQAIHVYDMEG-----RKIFAATTENSHD  181 (360)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS------STTCSCCEEEEEEEETTT-----TEEEECSCSSSBE
T ss_pred             cccccceeeeeecccccccchhhccceeeeeeeccccc------cceeeccccceeeecccc-----Cceeeeccccccc
Confidence            99999888888777777778888776644333222111      123344555666776654     2344555677889


Q ss_pred             eEEEEcCCC-eEEEEeCCCcEEEEECCCCeE-------EEEee-------------------------------------
Q 009614          392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------LRVFS-------------------------------------  426 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~-------l~~~~-------------------------------------  426 (531)
                      ..++|+|+| +|++++.++.+++||......       ...+.                                     
T Consensus       182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             ccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeeccc
Confidence            999999999 999999999999998754321       11100                                     


Q ss_pred             cCCceEEEEEeeCCC-------------CEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCc
Q 009614          427 HNNYVTSVAFNPVDD-------------NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN  493 (531)
Q Consensus       427 h~~~V~sv~fsp~d~-------------~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~  493 (531)
                      .......+...+ ++             .++++++.++.|++||+.+++...+.   ..|.+++|+|||++|++++.||.
T Consensus       262 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~  337 (360)
T d1k32a3         262 DPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGK  337 (360)
T ss_dssp             CCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSC
T ss_pred             CcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---CCcCEEEECCCCCEEEEEECCCe
Confidence            011222333332 21             23455667889999999998876443   45899999999999999999999


Q ss_pred             EEEEeCCCCeEEEEeee
Q 009614          494 CRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       494 I~iwd~~~~~l~~~~~~  510 (531)
                      |++||+.+++......+
T Consensus       338 i~v~d~~~~~~~~~~~~  354 (360)
T d1k32a3         338 IYTFPLEKPEDERTVET  354 (360)
T ss_dssp             EEEEESSCTTSCEECCC
T ss_pred             EEEEECCCCCcceEEEe
Confidence            99999999887665543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.5e-21  Score=183.24  Aligned_cols=228  Identities=13%  Similarity=0.174  Sum_probs=151.8

Q ss_pred             cceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccc--
Q 009614          276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID--  353 (531)
Q Consensus       276 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  353 (531)
                      ..++++||.++|++|+|+|    |+||+.||+|++||+.++..     .+...+.++.+...  ..++....+.....  
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~-----~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKA--QEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC-----CCCSCEEEEECCST--TCCEEEETTTEEEETT
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC-----CCCCCEEEEEecCC--CeEEEEeecccccccc
Confidence            3457999999999999987    99999999999999876542     23333444443322  22222222111000  


Q ss_pred             --------cccccc---------cCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCC-CcEEEE
Q 009614          354 --------KTKSLR---------KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD-KTVRLW  414 (531)
Q Consensus       354 --------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~D-g~V~lw  414 (531)
                              ....+.         ...+..+.+|....    ...+..+.. ...+  .++++++ .+++++.+ +.|++|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT----GDIIKSVRL-NSPG--SAVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTT----CCEEEEEEC-SSCE--EEEEECSSEEEEEETTTSCEEEE
T ss_pred             ccccccccceeeeeeccCCceEEEeecccceeeeccc----eeeeeeccc-ccee--eeeeccCcceeeeccccceeeee
Confidence                    000001         11111222222211    122333332 2333  3455666 66666655 579999


Q ss_pred             ECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE--ecCCCCceEEEEEccC---------
Q 009614          415 QVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPD---------  481 (531)
Q Consensus       415 dl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~--~~~~~~~v~~v~~spd---------  481 (531)
                      ++...+....+.  |...+++++|+| ++.+|++|+.||.|++||+.+++...  +..|...|++++|+|+         
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~  225 (287)
T d1pgua2         147 KLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI  225 (287)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred             eccccceeeeeeeccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccC
Confidence            998776665553  778999999999 99999999999999999999998763  6788999999999874         


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCCe-EEEEeeeeecccccCCCceeeeEEEee
Q 009614          482 -GKGGIVGTMTGNCRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       482 -g~~l~sgs~dg~I~iwd~~~~~-l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                       +.+|++|+.||+|+|||++.+. ++.        ....|...|++++|+|
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~--------~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPMKIIK--------ALNAHKDGVNNLLWET  268 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEE--------ETTSSTTCEEEEEEEE
T ss_pred             CCCeeEeecCCCeEEEEECCCCCeEEE--------EeCCCCCCeEEEEECC
Confidence             5689999999999999997643 322        1234567899999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=6.7e-21  Score=188.20  Aligned_cols=190  Identities=9%  Similarity=0.074  Sum_probs=162.2

Q ss_pred             eeeeC-CCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcccCc
Q 009614          241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE  317 (531)
Q Consensus       241 ~~fsp-dg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~  317 (531)
                      -.||| ||+++|+++ .|.|++|+...+...         -.+|...|.+++|+|||++|++++.+.  .|++||+.+++
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~---------~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---------KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEE---------ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEE---------EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence            46999 999999986 589999998754321         126999999999999999998877653  79999987654


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                                                                                     +..+..|...|.+++|+
T Consensus        78 ---------------------------------------------------------------~~~~~~~~~~v~~~~~s   94 (360)
T d1k32a3          78 ---------------------------------------------------------------AEKFEENLGNVFAMGVD   94 (360)
T ss_dssp             ---------------------------------------------------------------EEECCCCCCSEEEEEEC
T ss_pred             ---------------------------------------------------------------EEEeeCCCceEEeeeec
Confidence                                                                           23345688999999999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEe----------CCCeEEEEeCCCCeEEE
Q 009614          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS----------IDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       398 p~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs----------~Dg~I~Iwd~~~~~~~~  465 (531)
                      |++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+.          .++.+++||+.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            999 99999999999999999999888876 778899999999 999998653          34579999999999988


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeE
Q 009614          466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL  504 (531)
Q Consensus       466 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l  504 (531)
                      ...+...+..++|+|||++|++++.++.+++|+.....+
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             ecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence            888889999999999999999999999999999876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-20  Score=175.81  Aligned_cols=241  Identities=17%  Similarity=0.273  Sum_probs=165.9

Q ss_pred             eEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeecccc-------
Q 009614          278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKE-------  350 (531)
Q Consensus       278 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  350 (531)
                      +....|...|+|++|  ||++||||+.||+|+|||+.+++.+..+..+...+.++.+.  . ..++....+..       
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESS
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--c-ceeecccccccccccccc
Confidence            345678889998765  79999999999999999999999999998888777666542  1 22222211111       


Q ss_pred             --cc----------------ccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEE
Q 009614          351 --KI----------------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVR  412 (531)
Q Consensus       351 --~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~  412 (531)
                        ..                .....+....++.+.+|+...... ......+..|...|..+.+.+. .+++++.|+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~  161 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIK  161 (293)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEE
T ss_pred             cccccccccccccccccccccccceeecccccceeEeecccccc-ccccccccccccccccceeccc-ccccccCCCcee
Confidence              00                001112333444445554433221 1234456678888888887655 788899999999


Q ss_pred             EEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEEEccCCCEEEEEeC
Q 009614          413 LWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       413 lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                      +||+++++++..+. +...+..+.++   +.++++++.||+|+|||+++.+.+. ...+...+..  +++++.+|++|+.
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~  236 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY  236 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET
T ss_pred             eecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC
Confidence            99999999988886 77788887775   4789999999999999999988775 5666666654  5678899999999


Q ss_pred             CCcEEEEeCCCCeEEEEeeee-ecccccCCCceeeeEEEee
Q 009614          491 TGNCRFYDIKDNQLYQQNQIC-LQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       491 dg~I~iwd~~~~~l~~~~~~~-~~~~kk~~~~~It~l~f~p  530 (531)
                      ||.|++||+..+......... .......|...|++++|.+
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence            999999998643321111000 0001234567888888865

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=9.3e-20  Score=186.34  Aligned_cols=263  Identities=8%  Similarity=0.017  Sum_probs=162.0

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEccc
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE  315 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~  315 (531)
                      .+..++|+|||+++++++.|+.|++||+.+......  .......+|.+.+.+++|+|||++|+++ ..++.+++||..+
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            456799999999999999999999999986653211  1112234677788889999999987554 5799999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      +.....+..+...+....+........+....+....    .......+.+..+.....   ........++...+..+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~----~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF----IVNVKETGKVLLVNYKDI---DNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE----EEEETTTTEEEEEECSSS---SSCEEEEEECCSSEEEEE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEE----EEecCCCCeEEEEEeccc---cceeeEEeccCCccEeee
Confidence            8877665544333322222222211111111111100    001111112222111110   011122234555566666


Q ss_pred             EcCCC-eEEEE-eCCCcEEEEECCCCe-----------------------------------------------------
Q 009614          396 WSKNG-FLLSS-SADKTVRLWQVGIDR-----------------------------------------------------  420 (531)
Q Consensus       396 ~sp~~-~l~s~-s~Dg~V~lwdl~~~~-----------------------------------------------------  420 (531)
                      ++|++ +++++ ..+..+.+|+..+++                                                     
T Consensus       214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            66666 33332 334445555544332                                                     


Q ss_pred             -EEEEee-cCCceEEEEEeeCCCCEEEE-------EeCCCeEEEEeCCCCeEEE----------ecCCCCceEEEEEccC
Q 009614          421 -CLRVFS-HNNYVTSVAFNPVDDNYFIS-------GSIDGKVRIWEVRRCQVVD----------YTDIREIVSAVCYCPD  481 (531)
Q Consensus       421 -~l~~~~-h~~~V~sv~fsp~d~~~l~s-------gs~Dg~I~Iwd~~~~~~~~----------~~~~~~~v~~v~~spd  481 (531)
                       ....+. |...+..++|+| ++.+|++       ++.|++|+|||+.+++...          ...+...|.+++|+||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             eEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence             233332 667788999999 9999994       5568899999999875431          2345667999999999


Q ss_pred             CCEEEEE-----eCCCcEEEEeCCCCeEEEEee
Q 009614          482 GKGGIVG-----TMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       482 g~~l~sg-----s~dg~I~iwd~~~~~l~~~~~  509 (531)
                      |++++++     +.+|.|+|||.+++++...++
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence            9987543     357889999999999887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.3e-19  Score=175.81  Aligned_cols=244  Identities=10%  Similarity=-0.006  Sum_probs=170.3

Q ss_pred             eeeccccceeeeCCC-CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          233 RIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       233 ~~~~~~~s~~fspdg-~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      .|...|.+++|+|++ .+|++|+.||.|++|+.........      ....+........+.++...+++++.|+++++|
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA------LTNNEANLGICRICKYGDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE------CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccc------cccccccccccccccccccccccccccccccee
Confidence            456778889999875 5789999999999999986543221      112334445566677788899999999999999


Q ss_pred             EcccCccccceecCCC------CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          312 KVIEHERLDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      |+.++...........      ......+...                ....+.++.++.+.+|+......... .....
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~~~  190 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN----------------SSRLIVGMNNSQVQWFRLPLCEDDNG-TIEES  190 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC----------------SSEEEEEESTTEEEEEESSCCTTCCC-EEEEC
T ss_pred             eccccccceeeecccccccccceeeeeeeecc----------------CCceeeecCCCcEEEEecccCcccce-eeeec
Confidence            9876554332211110      0111111111                11234556677888887765443322 22334


Q ss_pred             cCCCCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeE---------EEEe-------ecCCceEEEEEeeCCCCEEEEE
Q 009614          386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC---------LRVF-------SHNNYVTSVAFNPVDDNYFISG  447 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~---------l~~~-------~h~~~V~sv~fsp~d~~~l~sg  447 (531)
                      .+...+.+..+.+..  .+++++.||.+.+|++.....         ....       .|...|++|+|+| ++++|++|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg  269 (342)
T d1yfqa_         191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTA  269 (342)
T ss_dssp             SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEE
T ss_pred             ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEE
Confidence            455566777766654  899999999999999864321         1111       2667899999999 99999999


Q ss_pred             eCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       448 s~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      +.||.|+|||+.+++.+....+...+..++|+|+|++|++|+.|+.+++|...
T Consensus       270 ~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         270 GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            99999999999999988755555667778999999999999999998888654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=2.2e-17  Score=158.41  Aligned_cols=243  Identities=11%  Similarity=0.113  Sum_probs=175.6

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEE-EeCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS-GGEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iWd~~~  315 (531)
                      ...++|+|||++| +++..++.|++||+.+...       .+.+..|. .+..+.|++++.+++. +..++.+.+|+..+
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-------eeeeeccc-cccccccccccccccccccccceeeeccccc
Confidence            3458999999987 5677899999999985442       23455555 4689999999986654 55678999999998


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ++....+.... .+.++.+.++....+               +....+..+.+|+.....    .+..+. +...+..+.
T Consensus       106 ~~~~~~~~~~~-~~~~~~~~~dg~~~~---------------~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~  164 (301)
T d1l0qa2         106 NTVAGTVKTGK-SPLGLALSPDGKKLY---------------VTNNGDKTVSVINTVTKA----VINTVS-VGRSPKGIA  164 (301)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEE---------------EEETTTTEEEEEETTTTE----EEEEEE-CCSSEEEEE
T ss_pred             ceeeeeccccc-cceEEEeecCCCeee---------------eeeccccceeeeeccccc----eeeecc-cCCCceEEE
Confidence            88776665433 233444443332221               122233344445443322    233333 345678899


Q ss_pred             EcCCC-eEEEEe-CCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC---CCeEEEEeCCCCeEEEecCCC
Q 009614          396 WSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDYTDIR  470 (531)
Q Consensus       396 ~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~---Dg~I~Iwd~~~~~~~~~~~~~  470 (531)
                      ++|++ .+++++ .++.+.+|+.........+.....+..++|++ ++..++.++.   ++.|++||+.+++++....+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~  243 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG  243 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred             eeccccceeeecccccccccccccceeeeecccccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcCC
Confidence            99998 555555 45778899998888888888888889999999 8887766543   468999999999988766666


Q ss_pred             CceEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          471 EIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       471 ~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ..+..++|+|||++| ++++.++.|++||+.+++++.++++
T Consensus       244 ~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            778999999999987 5677799999999999999988764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=8.7e-18  Score=163.65  Aligned_cols=246  Identities=11%  Similarity=0.106  Sum_probs=164.6

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEc--ccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCccccceec
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~--~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      .++++++.|++|+|||+.+...       ..++.  .+...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            4789999999999999985432       23343  344568899999999987 4667899999999999988777655


Q ss_pred             CCCC-----CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          325 QDTD-----PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       325 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                      ....     +..+.+.++....+.......    .........+..+.+|+.....    ....+. +...+..++|+|+
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~d  145 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPVR----LELTHFEVQPTRVALYDAETLS----RRKAFE-APRQITMLAWARD  145 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEE----ECSSCEEECCCEEEEEETTTTE----EEEEEE-CCSSCCCEEECTT
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCCc----ceeeeccccccceeeccccCCe----EEEecc-ccCCceEEEEcCC
Confidence            4321     233444443332222211000    0111112233444455444322    223333 3455778888888


Q ss_pred             C-eEEEEeCCCcEEEEECCCCeEEEEe-----------------------------------------------------
Q 009614          400 G-FLLSSSADKTVRLWQVGIDRCLRVF-----------------------------------------------------  425 (531)
Q Consensus       400 ~-~l~s~s~Dg~V~lwdl~~~~~l~~~-----------------------------------------------------  425 (531)
                      | ++++++.+  +.+||..+++....+                                                     
T Consensus       146 g~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         146 GSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             SSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            8 67666543  566776655433322                                                     


Q ss_pred             --------------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCC
Q 009614          426 --------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT  491 (531)
Q Consensus       426 --------------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d  491 (531)
                                    .+...+..+.++| ++.+++.+  ++.|++||+.+++.+....+...+.+++|+|||++|++++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         224 MDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBS
T ss_pred             EEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC
Confidence                          1333455566666 66676655  589999999999999877778889999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEeeeeecc
Q 009614          492 GNCRFYDIKDNQLYQQNQICLQG  514 (531)
Q Consensus       492 g~I~iwd~~~~~l~~~~~~~~~~  514 (531)
                      |.|++||+.+++.+.++++.-.+
T Consensus       301 ~~i~v~D~~t~~~v~~i~~~g~~  323 (337)
T d1pbyb_         301 GDLAAYDAETLEKKGQVDLPGNA  323 (337)
T ss_dssp             SEEEEEETTTCCEEEEEECGGGC
T ss_pred             CcEEEEECCCCcEEEEEECCCCC
Confidence            99999999999999888765444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=7.5e-18  Score=164.73  Aligned_cols=261  Identities=8%  Similarity=0.006  Sum_probs=168.6

Q ss_pred             eeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcccCcc
Q 009614          241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHER  318 (531)
Q Consensus       241 ~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~  318 (531)
                      ++|+++++++++++.+++|.|||+.+.+.       .+++. .|...+.+++|+|||++| +++..++.|.+||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            47899999999999999999999985432       23444 456678899999999987 4556789999999999987


Q ss_pred             ccceecCCCC------CeeEEEeecCCcceee--------------------eeccccccc----------cccccccCC
Q 009614          319 LDGFDVQDTD------PSCLYFTINHLSQLIP--------------------IDVDKEKID----------KTKSLRKSS  362 (531)
Q Consensus       319 ~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~----------~~~~~~~~~  362 (531)
                      ...+......      +..+.+.++.....+.                    +........          .......+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            7666543322      2333443333221111                    111111100          001112223


Q ss_pred             CceEEEeCCccc--cc-cCcceeEeecCCCCeeEEEEcCCC---------------------------eEEEEeCCCcEE
Q 009614          363 DLTCVVLPPKVF--RL-LEKPLHEFQGHSSEVLDLSWSKNG---------------------------FLLSSSADKTVR  412 (531)
Q Consensus       363 ~~~~~~~~~~~~--~~-~~~~~~~~~~h~~~I~~l~~sp~~---------------------------~l~s~s~Dg~V~  412 (531)
                      ++.++++.....  .. ..+.+..+..+ .....+.++|++                           .++++..+..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
T d1jmxb_         155 DGSLYVAGPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  233 (346)
T ss_dssp             TSCEEEESSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             CCEEEEeCCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence            333333322111  11 11222222222 112222333322                           233444556788


Q ss_pred             EEECCCCeEEEEe--ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeC
Q 009614          413 LWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM  490 (531)
Q Consensus       413 lwdl~~~~~l~~~--~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~  490 (531)
                      +||+.++......  .+...+..+.++| ++.+++... ++.|++||+.+++.+....+...+.+++|+|||++|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         234 SVDLKTGKTHTQEFADLTELYFTGLRSP-KDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECS-SCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEECCCCceEEEEeecccceeEEEEEeC-CCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC
Confidence            8999887766544  3778899999999 666666655 45899999999999876667778999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEeeee
Q 009614          491 TGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       491 dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      ||.|++||+.+++.+.+++++
T Consensus       312 d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEECS
T ss_pred             CCcEEEEECccCCEEEEEECC
Confidence            999999999999999987754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.75  E-value=7.3e-16  Score=147.49  Aligned_cols=241  Identities=13%  Similarity=0.183  Sum_probs=175.3

Q ss_pred             EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcccCccccceecCCCCC
Q 009614          251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDP  329 (531)
Q Consensus       251 asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~  329 (531)
                      ++++.++.|.|||..+.+.       .+++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +
T Consensus         6 V~~~~~~~v~v~D~~t~~~-------~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~   76 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV-------TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-P   76 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE-------EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-E
T ss_pred             EEECCCCEEEEEECCCCeE-------EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-c
Confidence            5677899999999986542       223433 34578999999999874 667899999999999988877765432 2


Q ss_pred             eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC--eEEEEeC
Q 009614          330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSA  407 (531)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~--~l~s~s~  407 (531)
                      ..+.+..+....+               +....+..+.+|+....    +....+. +...+.++.++|++  .++++..
T Consensus        77 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          77 QGVAVSPDGKQVY---------------VTNMASSTLSVIDTTSN----TVAGTVK-TGKSPLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             EEEEECTTSSEEE---------------EEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccc---------------ccccccceeeecccccc----eeeeecc-ccccceEEEeecCCCeeeeeecc
Confidence            3333333222111               22333445555554432    2233333 45567899999999  5567778


Q ss_pred             CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEE
Q 009614          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI  486 (531)
Q Consensus       408 Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~  486 (531)
                      ++.+.+|+..+...+..+.+...+..+.++| ++.++++++. ++.+.+|+....+..........+..++|++++..++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  215 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAY  215 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEE
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeec-cccceeeecccccccccccccceeeeecccccCCcceeeccccccccc
Confidence            8999999999999999998888899999999 7777766665 4778899998888887776777889999999999887


Q ss_pred             EEeC---CCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          487 VGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       487 sgs~---dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      +++.   ++.|++||+.+++++..+..         +..+++++|+|
T Consensus       216 v~~~~~~~~~v~v~D~~t~~~~~~~~~---------~~~~~~va~sp  253 (301)
T d1l0qa2         216 VTNVDKYFNTVSMIDTGTNKITARIPV---------GPDPAGIAVTP  253 (301)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEEEEEC---------CSSEEEEEECT
T ss_pred             cccccceeeeeeeeecCCCeEEEEEcC---------CCCEEEEEEeC
Confidence            7654   46799999999998876543         23567788776

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=7.9e-18  Score=172.34  Aligned_cols=263  Identities=7%  Similarity=-0.085  Sum_probs=165.7

Q ss_pred             cccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEE-EEEeCCCcEEEEEccc
Q 009614          237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIE  315 (531)
Q Consensus       237 ~~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~  315 (531)
                      .+..++|+|||+++++++.|+.|++||+.+.....  ........+|.+.+.+..|+|||++| ++++.+++|+|||..+
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE--EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence            35568999999999999999999999987654321  11112234577788888999999986 6788899999999999


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      ++.+..+..+........+.+......+....+..    ...+....++.+.+++......  ..+..+ .+...+.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~----~~~vs~~~~~~i~~~d~~~~~~--~~~~~i-~~g~~~~~~~  213 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP----EFIVNVKETGKILLVDYTDLNN--LKTTEI-SAERFLHDGG  213 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS----EEEEEETTTTEEEEEETTCSSE--EEEEEE-ECCSSEEEEE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCC----EEEEEEccCCeEEEEEccCCCc--ceEEEE-cccCccccce
Confidence            98877665544333332232222211111111111    1112334455566665433211  011122 3456788999


Q ss_pred             EcCCC-eEEEEe-CCCcEEEEECCCCeEEEEee---------------------------------------------cC
Q 009614          396 WSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFS---------------------------------------------HN  428 (531)
Q Consensus       396 ~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~~~~---------------------------------------------h~  428 (531)
                      ++|+| ++++++ .+..+.++|..+++.+..+.                                             |.
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~  293 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA  293 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccc
Confidence            99999 555554 56678899987765543321                                             11


Q ss_pred             CceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCe------------------------EE---------EecCCCCceEE
Q 009614          429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------------------------VV---------DYTDIREIVSA  475 (531)
Q Consensus       429 ~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~------------------------~~---------~~~~~~~~v~~  475 (531)
                      ..+....+.| ++..+++++.+..+++|+..+..                        .+         .+..|...+.+
T Consensus       294 ~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~  372 (432)
T d1qksa2         294 WKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ  372 (432)
T ss_dssp             TSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred             cEEEEEEEcC-CCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEE
Confidence            2344455666 66666667667666666543210                        00         12246667899


Q ss_pred             EEEccCCCEEEEEe-----CCCcEEEEeCCCCeEEEEee
Q 009614          476 VCYCPDGKGGIVGT-----MTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       476 v~~spdg~~l~sgs-----~dg~I~iwd~~~~~l~~~~~  509 (531)
                      ++|+|||++|+++.     .+|.|+|||.++.++...++
T Consensus       373 ~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         373 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             eEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEec
Confidence            99999999886664     46889999999999977654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=1.4e-16  Score=162.40  Aligned_cols=259  Identities=10%  Similarity=0.065  Sum_probs=158.2

Q ss_pred             CeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC
Q 009614          248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT  327 (531)
Q Consensus       248 ~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~  327 (531)
                      -++++.+.||+|+|||..+.+       ...++..|. .+..++|+|||++|++++.|++|++||+.+++..........
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~-------~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKK-------IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCS-------EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEEcCCCEEEEEECCCCc-------EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            355778899999999998543       334566664 699999999999999999999999999998875433221111


Q ss_pred             -CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC-----------eeEEE
Q 009614          328 -DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE-----------VLDLS  395 (531)
Q Consensus       328 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----------I~~l~  395 (531)
                       ....+.+.+.         +...  .....+....+..+.+|+.....    ++..+..|...           ...+.
T Consensus       105 ~~~~~~~~s~~---------~spD--G~~l~v~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (426)
T d1hzua2         105 IEARSVESSKF---------KGYE--DRYTIAGAYWPPQFAIMDGETLE----PKQIVSTRGMTVDTQTYHPEPRVAAII  169 (426)
T ss_dssp             SEEEEEEECCS---------TTCT--TTEEEEEEEESSEEEEEETTTCC----EEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             CCCcceEEeee---------ecCC--CCEEEEeecCCCeEEEEcCCccc----eeEEeeccCCCccceeecCCCceeEEE
Confidence             1111111111         0000  01111233345566667655532    23334444333           34445


Q ss_pred             EcCCC-e-EEEEeCCCcEEEEECCCCe--EEEEeecCCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCCeEE------
Q 009614          396 WSKNG-F-LLSSSADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVV------  464 (531)
Q Consensus       396 ~sp~~-~-l~s~s~Dg~V~lwdl~~~~--~l~~~~h~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~~~~------  464 (531)
                      .++++ . +++....+.+.+++.....  .+....+...+..+.|+| ++++++++. .+..+.+|+..+++.+      
T Consensus       170 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         170 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-TSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred             ECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC-CCcEEEeeeecccceeeeecccccEEEEeccC
Confidence            55555 2 2233334445555554443  233445778889999999 777666654 4556777776654321      


Q ss_pred             -------------------------------------------------EecCCCCceEEEEEccCCCEEEE-------E
Q 009614          465 -------------------------------------------------DYTDIREIVSAVCYCPDGKGGIV-------G  488 (531)
Q Consensus       465 -------------------------------------------------~~~~~~~~v~~v~~spdg~~l~s-------g  488 (531)
                                                                       .+.+|...+..++|+|||++|++       +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~  328 (426)
T d1hzua2         249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  328 (426)
T ss_dssp             SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred             CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence                                                             23345667888999999999995       4


Q ss_pred             eCCCcEEEEeCCCCeEEEEeeeeec-ccccCCCceeeeEEEee
Q 009614          489 TMTGNCRFYDIKDNQLYQQNQICLQ-GKKKLPGKRITGFQVVK  530 (531)
Q Consensus       489 s~dg~I~iwd~~~~~l~~~~~~~~~-~~kk~~~~~It~l~f~p  530 (531)
                      ..+++|+|||+.++++..+....-. ..-..+.+++..++|+|
T Consensus       329 ~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence            5678999999999887654421100 01123467899999987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.1e-16  Score=161.58  Aligned_cols=200  Identities=10%  Similarity=-0.012  Sum_probs=152.6

Q ss_pred             CCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceec
Q 009614          245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV  324 (531)
Q Consensus       245 pdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~  324 (531)
                      ++.-++++.+.+|+|.|||..+.+       ....+..| ..+..++|||||++|++++.||+|++||+.+++...... 
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~-------v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~-  100 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-  100 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC-------EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCc-------EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE-
Confidence            333345888999999999988544       33456666 469999999999999999999999999998765321110 


Q ss_pred             CCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-e-E
Q 009614          325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-L  402 (531)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~-l  402 (531)
                                                                              +....+|.+.+.+..|+|+| + +
T Consensus       101 --------------------------------------------------------i~~~~~~~~~~~s~~~SpDG~~l~  124 (432)
T d1qksa2         101 --------------------------------------------------------IKIGSEARSIETSKMEGWEDKYAI  124 (432)
T ss_dssp             --------------------------------------------------------EECCSEEEEEEECCSTTCTTTEEE
T ss_pred             --------------------------------------------------------EecCCCCCCeEEecccCCCCCEEE
Confidence                                                                    12223455566777889999 5 5


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEee------------cCCceEEEEEeeCCCCEE-EEEeCCCeEEEEeCCCCeEE--Eec
Q 009614          403 LSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVV--DYT  467 (531)
Q Consensus       403 ~s~s~Dg~V~lwdl~~~~~l~~~~------------h~~~V~sv~fsp~d~~~l-~sgs~Dg~I~Iwd~~~~~~~--~~~  467 (531)
                      ++++.+++|++||..+++++..+.            +......+.++| ++.++ ++...++.|.+||..+.+..  ...
T Consensus       125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i  203 (432)
T d1qksa2         125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEI  203 (432)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred             EEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEE
Confidence            788899999999999999887763            445677899999 66654 56677899999999987644  344


Q ss_pred             CCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEeee
Q 009614          468 DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       468 ~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~~~~~~  510 (531)
                      .+...+..++|+|||+++++++. ++.+.++|..++++......
T Consensus       204 ~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         204 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            56677899999999998877775 55799999999988876553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=3.8e-14  Score=140.40  Aligned_cols=265  Identities=9%  Similarity=-0.071  Sum_probs=167.4

Q ss_pred             eccccceeeeCCCCeEEee-----ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe------
Q 009614          235 IDRHGSATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG------  303 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasg-----s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs------  303 (531)
                      ...+..++++|||+.+++.     +..+.|.+||....+.       ...+..+..+  .++|+|||++|++++      
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-------EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcc
Confidence            3455668999999998763     2346789998775432       2345555433  799999999999875      


Q ss_pred             ----CCCcEEEEEcccCccccceecCCCCC-------eeEEEeecCCcceeee----------ecccccc----------
Q 009614          304 ----EDGTVRVWKVIEHERLDGFDVQDTDP-------SCLYFTINHLSQLIPI----------DVDKEKI----------  352 (531)
Q Consensus       304 ----~Dg~I~iWd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----------~~~~~~~----------  352 (531)
                          .++.|.+||+.+++....+..+....       ..+.+.++.....+..          .......          
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCY  170 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeE
Confidence                46789999999998876665443322       2334444433222211          1100000          


Q ss_pred             -----ccccccccCCCceEEEeCCccccccCcceeEe--ecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe
Q 009614          353 -----DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF  425 (531)
Q Consensus       353 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~  425 (531)
                           .....+....++.+.+|+..............  .++......+.+.+++.++..+.++.+.+|+..........
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEE
Confidence                 01112344555666666554433221111111  11222334555666667777788999999998876543322


Q ss_pred             e-------------cCCceEEEEEeeCCCC----------EEEEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEccCC
Q 009614          426 S-------------HNNYVTSVAFNPVDDN----------YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG  482 (531)
Q Consensus       426 ~-------------h~~~V~sv~fsp~d~~----------~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg  482 (531)
                      .             .......++++| ++.          .+++...++.|.+||+.+++.+....+...+..++|+|||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG  329 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG  329 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCC
Confidence            1             122334455555 444          3445666788999999999999877888899999999999


Q ss_pred             CE--EEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          483 KG--GIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       483 ~~--l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                      +.  +++++.|+.|++||+.+++++..+.
T Consensus       330 ~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         330 GPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            84  4678899999999999999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.7e-14  Score=141.74  Aligned_cols=252  Identities=10%  Similarity=-0.029  Sum_probs=154.0

Q ss_pred             ceeeeCCCCeEEee----------ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe--CCCc
Q 009614          240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDGT  307 (531)
Q Consensus       240 s~~fspdg~~lasg----------s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs--~Dg~  307 (531)
                      .++|+|||++|++.          ..++.|++||..........................++|+|+|++++.+.  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            57999999988763          45789999999865432110000000011122345689999999887764  4678


Q ss_pred             EEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       308 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      +.+|+..+++....+......   ..+ +......+.+..+....    .+..........+....         ....+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~~----~v~~~~~~~~~~~~~~~---------~~~~~  193 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCY---HIF-PTAPDTFFMHCRDGSLA----KVAFGTEGTPEITHTEV---------FHPED  193 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEE---EEE-EEETTEEEEEETTSCEE----EEECCSSSCCEEEECCC---------CSCTT
T ss_pred             eeeeecCCCcEeeEEecCCcc---eEe-ecCCcceEEEcCCCCEE----EEEecCCCeEEEEeccc---------cccee
Confidence            999999998877666443211   111 11111111111111100    00001111111111110         01223


Q ss_pred             CCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEe--e-----------cCCceEEEEEeeCCCCEEEEEeCC---
Q 009614          388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--S-----------HNNYVTSVAFNPVDDNYFISGSID---  450 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~--~-----------h~~~V~sv~fsp~d~~~l~sgs~D---  450 (531)
                      ...+....+.+++ .++.++.++.+.+|++..+.....-  .           .......++++| ++..++....+   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDE  272 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCT
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCc
Confidence            4445566777776 8889999999999999887543221  1           112334588898 88877765543   


Q ss_pred             -------CeEEEEeCCCCeEEEecCCCCceEEEEEccCCC--EEEEEeCCCcEEEEeCCCCeEEEEee
Q 009614          451 -------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK--GGIVGTMTGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       451 -------g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~~~~l~~~~~  509 (531)
                             ..|.+||+.+++.+....+...+.+++|+|||+  ++++++.|+.|++||+.+++++.++.
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                   369999999999886555666789999999998  34667779999999999999987664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=6.6e-13  Score=128.52  Aligned_cols=258  Identities=11%  Similarity=0.127  Sum_probs=153.9

Q ss_pred             eeccccceeeeCCCCeEEe-eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEEE
Q 009614          234 IIDRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVW  311 (531)
Q Consensus       234 ~~~~~~s~~fspdg~~las-gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iW  311 (531)
                      +...+..++|+|||++|++ +..++.|++|++.........    .....+...+..++|+|||++|++++. ++.|.+|
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~----~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF----AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE----EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE----eeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            3456678999999999855 555899999998754332210    011234456788999999999999875 7789999


Q ss_pred             EcccCcccccee--cCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc--cCcceeEeecC
Q 009614          312 KVIEHERLDGFD--VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--LEKPLHEFQGH  387 (531)
Q Consensus       312 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h  387 (531)
                      +...........  .....+..+.+.++....+ ....              ....+.+|+......  ..........+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~-~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~  175 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW-VPAL--------------KQDRICLFTVSDDGHLVAQDPAEVTTVE  175 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEE-EEEG--------------GGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred             ccccccceecccccCCCccceEEEeeecceeee-cccc--------------ccceeeEEEeccCCcceeeeceeeeeec
Confidence            887665433332  2222233344433332211 1111              111222222111000  00001112224


Q ss_pred             CCCeeEEEEcCCC-e-EEEEeCCCcEEEEECCCCe----EEEEe-------ecCCceEEEEEeeCCCCEEE-EEeCCCeE
Q 009614          388 SSEVLDLSWSKNG-F-LLSSSADKTVRLWQVGIDR----CLRVF-------SHNNYVTSVAFNPVDDNYFI-SGSIDGKV  453 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~-l~s~s~Dg~V~lwdl~~~~----~l~~~-------~h~~~V~sv~fsp~d~~~l~-sgs~Dg~I  453 (531)
                      ......++|++++ . +.+....+...+|+.....    .....       ........++++| ++++++ ++..++.+
T Consensus       176 g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         176 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLI  254 (333)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred             CCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeeecccCCeE
Confidence            4566889999998 4 4455566778888865432    11222       1335667889999 777555 45567899


Q ss_pred             EEEeCCCCe----EEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEE--eCCCCeEEEEeeee
Q 009614          454 RIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFY--DIKDNQLYQQNQIC  511 (531)
Q Consensus       454 ~Iwd~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iw--d~~~~~l~~~~~~~  511 (531)
                      .+|++....    ..........+..++|+|||++|++++. ++.|++|  |..+|++.....+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEecc
Confidence            999887542    2223444556788999999999887765 5889999  55778776544433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.4e-13  Score=133.21  Aligned_cols=214  Identities=10%  Similarity=0.051  Sum_probs=141.2

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcc-----cCCCEEEEEEccCCCEEEEEe--------
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-----HEGSILTMKFSLDGQYLASGG--------  303 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~-----H~~~I~~l~fspdg~~Lasgs--------  303 (531)
                      +.+++|+|||+++ ++++.++.|.+||+.+.+...       .+..     +...+..++|+|++++++++.        
T Consensus        36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~-------~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~  108 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG-------RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE-------EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE-------EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceee
Confidence            4568999999987 567789999999998654321       2222     233456799999999998876        


Q ss_pred             ----CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceee------eecccccccccc-----------------
Q 009614          304 ----EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIP------IDVDKEKIDKTK-----------------  356 (531)
Q Consensus       304 ----~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----------------  356 (531)
                          .++.+.+||..+++....+.... .+..+.+.++....+..      ++..........                 
T Consensus       109 ~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         109 HFEVQPTRVALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEECCS-SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             eccccccceeeccccCCeEEEeccccC-CceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcce
Confidence                46788999999988777666443 34455554443322211      111111000000                 


Q ss_pred             -ccccCC-----------------------CceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcE
Q 009614          357 -SLRKSS-----------------------DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTV  411 (531)
Q Consensus       357 -~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V  411 (531)
                       ......                       +..+.+++.....   .....+..+...+..+.++|++ +++.+  ++.|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i  262 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc---EEEEEecCCCcceEEEEecccceEEEEc--cccE
Confidence             000000                       1111111111111   0122344566777888888888 55544  5899


Q ss_pred             EEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       412 ~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      ++||+.+++.+..+.+...+.+++|+| ++++|++++.|++|+|||+.+.+.+.
T Consensus       263 ~v~d~~~~~~~~~~~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             EEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            999999999999999999999999999 99999999999999999999988774

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=1.4e-13  Score=133.77  Aligned_cols=222  Identities=10%  Similarity=0.061  Sum_probs=137.6

Q ss_pred             ccceeeeCCCCeE-EeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe------------C
Q 009614          238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG------------E  304 (531)
Q Consensus       238 ~~s~~fspdg~~l-asgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs------------~  304 (531)
                      +.+++|+|||+++ +++..++.|++||+........ .........+...+..++|+|||++|++++            .
T Consensus        42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~-~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~  120 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH-ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  120 (346)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             cceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee-ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence            4578999999987 5567899999999986543211 111111122333567899999999988775            4


Q ss_pred             CCcEEEEEcccCccccceecCCC--CCeeEEEeecCC-----cceeeeecccccccc------------------ccccc
Q 009614          305 DGTVRVWKVIEHERLDGFDVQDT--DPSCLYFTINHL-----SQLIPIDVDKEKIDK------------------TKSLR  359 (531)
Q Consensus       305 Dg~I~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------------------~~~~~  359 (531)
                      ++.+.+|+..+++....+.....  ....+.+.....     ..+..+.........                  .....
T Consensus       121 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             cceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEE
Confidence            78899999988876554432221  111111111100     000111110000000                  00001


Q ss_pred             cCCCce-------------------------EEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEE
Q 009614          360 KSSDLT-------------------------CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRL  413 (531)
Q Consensus       360 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~l  413 (531)
                      ......                         +.+|+.....   .....+..|...+..+.+++++ +++... ++.|.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v  276 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAK  276 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc---eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEE
Confidence            111111                         1112211111   1123345677888899999988 655554 467999


Q ss_pred             EECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 009614          414 WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD  465 (531)
Q Consensus       414 wdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~  465 (531)
                      ||+.+++.+..+.+...+.+++|+| |+++|++++.|+.|+|||+.+++.+.
T Consensus       277 ~d~~~~~~~~~~~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         277 YDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             EETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EECCCCcEEEEEcCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEE
Confidence            9999999999998888899999999 99999999999999999999999885

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=1.3e-12  Score=129.64  Aligned_cols=242  Identities=8%  Similarity=-0.092  Sum_probs=148.9

Q ss_pred             ceeeeCCCCeEEee----------ecCCeEEEEeCCCCcccccccccceEEcccC-------CCEEEEEEccCCCEEEEE
Q 009614          240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-------GSILTMKFSLDGQYLASG  302 (531)
Q Consensus       240 s~~fspdg~~lasg----------s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-------~~I~~l~fspdg~~Lasg  302 (531)
                      .++|+|||+.+++.          ..++.|.+||..+....       ..+..|.       .....++|+|||++|+++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~-------~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va  141 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF  141 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe-------eeecCCccceecccCCccceEECCCCCEEEEE
Confidence            47899999998864          45788999999865432       1222211       223468999999999887


Q ss_pred             e-CCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccc--cCc
Q 009614          303 G-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--LEK  379 (531)
Q Consensus       303 s-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  379 (531)
                      . .++.|.+||+.+++....+..+.....    .+.....               .+..+.++.+..+.......  ...
T Consensus       142 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         142 LFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAAT---------------HYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             ECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTE---------------EECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             eCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCce---------------EEEEcCCCCEEEEEecCCceeeeee
Confidence            6 579999999999987776654432211    1111111               11222233333322211100  000


Q ss_pred             ceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-------------cCCceEEEEEeeCCCCEEE
Q 009614          380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       380 ~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-------------h~~~V~sv~fsp~d~~~l~  445 (531)
                      ....+..+...+....+.+++ .+.+.  .+.+.++++..+.......             .......++++| ++..++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~  279 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIM  279 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEE
T ss_pred             ecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEE
Confidence            111223344555667777777 33333  4556777766554443221             112234578888 666655


Q ss_pred             EEeCC---------CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCE--EEEEeCCCcEEEEeCCCCeEEEEeee
Q 009614          446 SGSID---------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG--GIVGTMTGNCRFYDIKDNQLYQQNQI  510 (531)
Q Consensus       446 sgs~D---------g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~--l~sgs~dg~I~iwd~~~~~l~~~~~~  510 (531)
                      ....+         ..|.+||..+++.+....+...+.+++|+|||+.  ++++..++.|++||+.+++.+..+++
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            44322         3599999999998876666678899999999973  45667789999999999999987764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.6e-11  Score=118.46  Aligned_cols=187  Identities=13%  Similarity=0.182  Sum_probs=132.0

Q ss_pred             EEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcccCccccceecCCCC
Q 009614          250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTD  328 (531)
Q Consensus       250 lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~~~~~~~~~~~~~  328 (531)
                      +++++.+++|+||++.....    +... ....|.+.|..|+|+|||++|++++ .|+.|++|++........+      
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~----l~~~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~------   75 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGA----LTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF------   75 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSC----EEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE------
T ss_pred             EEECCCCCcEEEEEEcCCCC----eEEE-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE------
Confidence            46788999999999874321    1111 2235788999999999999996555 5899999998655422111      


Q ss_pred             CeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEe-
Q 009614          329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-  406 (531)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s-  406 (531)
                                                                           .....+...+..++|+|+| +|++++ 
T Consensus        76 -----------------------------------------------------~~~~~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          76 -----------------------------------------------------AAESALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             -----------------------------------------------------EEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred             -----------------------------------------------------eeecccCCCceEEEEcCCCCEEeeccc
Confidence                                                                 0111234456789999999 777766 


Q ss_pred             CCCcEEEEECCCCeEEEEe---ecCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEE-------EecCCCCceEE
Q 009614          407 ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV-------DYTDIREIVSA  475 (531)
Q Consensus       407 ~Dg~V~lwdl~~~~~l~~~---~h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~-------~~~~~~~~v~~  475 (531)
                      .++.|.+|+..........   .+...+.++.++| +++++++++. +..|.+|+.......       ...........
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~  181 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH  181 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred             CCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccE
Confidence            5778999998877655444   3677889999999 8888777764 567999998764322       13334556788


Q ss_pred             EEEccCCCEEEEEe-CCCcEEEEeCCC
Q 009614          476 VCYCPDGKGGIVGT-MTGNCRFYDIKD  501 (531)
Q Consensus       476 v~~spdg~~l~sgs-~dg~I~iwd~~~  501 (531)
                      ++|++++.+++... ..+...+|+...
T Consensus       182 i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         182 MVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             EEEeccceeEEeeccccCceEEEeecc
Confidence            99999999887665 456677887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.30  E-value=3.9e-10  Score=110.80  Aligned_cols=80  Identities=9%  Similarity=0.028  Sum_probs=67.2

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC--EEEEEeCCCeEEEEeCCCCeEEE-ecCCCCceEEEE
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVC  477 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~--~l~sgs~Dg~I~Iwd~~~~~~~~-~~~~~~~v~~v~  477 (531)
                      .+++...++.+.+||+.+++.+..+.+...+..++|+| |++  ++++++.|+.|+|||+.+++.+. +..+....+.|+
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~  368 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEE
Confidence            34556677889999999999999999999999999999 887  45688999999999999999886 555777778887


Q ss_pred             EccC
Q 009614          478 YCPD  481 (531)
Q Consensus       478 ~spd  481 (531)
                      +.++
T Consensus       369 ~~~~  372 (373)
T d2madh_         369 VMNE  372 (373)
T ss_pred             EecC
Confidence            7654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=2.1e-10  Score=111.67  Aligned_cols=251  Identities=9%  Similarity=0.014  Sum_probs=145.9

Q ss_pred             eeeeCCCCeEEee-----ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEe----------CC
Q 009614          241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED  305 (531)
Q Consensus       241 ~~fspdg~~lasg-----s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~D  305 (531)
                      .+.+||++.+++.     .....|.+||..+.+.       ..++..+.  +..++|+|||++|++++          .|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------EEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            4678999998764     3466799999886542       22344443  34799999999887653          47


Q ss_pred             CcEEEEEcccCccccceecCCCCC-------eeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccC
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDP-------SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE  378 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (531)
                      +.|++||+.+++....+..+....       ..+.+.++.....+              .....+..+.+|+.....   
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v--------------~~~~~~~~~~~~~~~~~~---  140 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF--------------YQFSPAPAVGVVDLEGKA---  140 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE--------------EECSSSCEEEEEETTTTE---
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEE--------------ecCCCCceeeeeecCCCc---
Confidence            899999999998777665443322       22233322211111              112233344444443322   


Q ss_pred             cceeEeecCCCCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe-------ecCCceEEEEEeeCCCCEEEEEeCCC
Q 009614          379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-------SHNNYVTSVAFNPVDDNYFISGSIDG  451 (531)
Q Consensus       379 ~~~~~~~~h~~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~-------~h~~~V~sv~fsp~d~~~l~sgs~Dg  451 (531)
                       .+..+..+....  +........++.+.|+...++.......+..+       .+...+....+.+ ++..++.++.++
T Consensus       141 -~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  216 (355)
T d2bbkh_         141 -FKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTG  216 (355)
T ss_dssp             -EEEEEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTS
T ss_pred             -EeeEEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCC
Confidence             222222221110  00011113334444554444444333222222       1344456677887 788899999999


Q ss_pred             eEEEEeCCCCeEEEe---cCC----------CCceEEEEEccCCCEEEEEeCCC----------cEEEEeCCCCeEEEEe
Q 009614          452 KVRIWEVRRCQVVDY---TDI----------REIVSAVCYCPDGKGGIVGTMTG----------NCRFYDIKDNQLYQQN  508 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~~---~~~----------~~~v~~v~~spdg~~l~sgs~dg----------~I~iwd~~~~~l~~~~  508 (531)
                      .+++|++..+++..+   ..+          ......++++|++..++....++          .|.+||+.+++.+..+
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            999999998765421   111          12234588999999888766543          6999999999988766


Q ss_pred             eeeecccccCCCceeeeEEEee
Q 009614          509 QICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       509 ~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      ...         ..+++++|+|
T Consensus       297 ~~~---------~~~~~~a~sp  309 (355)
T d2bbkh_         297 EMG---------HEIDSINVSQ  309 (355)
T ss_dssp             EEE---------EEECEEEECC
T ss_pred             cCC---------CCEEEEEEcC
Confidence            532         3456666665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=5.5e-09  Score=106.37  Aligned_cols=76  Identities=11%  Similarity=-0.019  Sum_probs=60.2

Q ss_pred             ccccceeeeCCCCeEEeeec---------CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCC
Q 009614          236 DRHGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG  306 (531)
Q Consensus       236 ~~~~s~~fspdg~~lasgs~---------dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg  306 (531)
                      ..+.++.|+|||++|+.++.         ++.+.|||+.++...        .+..|...+..+.|||||++||.. .++
T Consensus        62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~--------~l~~~~~~~~~~~~SPDG~~ia~~-~~~  132 (470)
T d2bgra1          62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--------TEERIPNNTQWVTWSPVGHKLAYV-WNN  132 (470)
T ss_dssp             SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--------CSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred             CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc--------ccccCCccccccccccCcceeeEe-ecc
Confidence            44567899999999998743         567889999865432        356788999999999999999986 467


Q ss_pred             cEEEEEcccCcccc
Q 009614          307 TVRVWKVIEHERLD  320 (531)
Q Consensus       307 ~I~iWd~~~~~~~~  320 (531)
                      .+.+|+..+++...
T Consensus       133 ~l~~~~~~~g~~~~  146 (470)
T d2bgra1         133 DIYVKIEPNLPSYR  146 (470)
T ss_dssp             EEEEESSTTSCCEE
T ss_pred             cceEEECCCCceee
Confidence            89999998876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=1.1e-09  Score=111.79  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=111.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEE
Q 009614          289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV  368 (531)
Q Consensus       289 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (531)
                      .+.|.+++.++..  .|+.|.+||+.+++....+.                                             
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~---------------------------------------------   53 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLE---------------------------------------------   53 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEEC---------------------------------------------
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEc---------------------------------------------
Confidence            4789999987764  57889999998887432211                                             


Q ss_pred             eCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC---------CCcEEEEECCCCeEEEEeecCCceEEEEEee
Q 009614          369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA---------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP  438 (531)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~---------Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp  438 (531)
                                  -..+..|...|.++.|+|+| +|+.++.         ++.+.|||+.+++......+...+..+.|+|
T Consensus        54 ------------~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP  121 (470)
T d2bgra1          54 ------------NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP  121 (470)
T ss_dssp             ------------TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS
T ss_pred             ------------hhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc
Confidence                        11234577789999999999 7777643         5678999999998766666889999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeEEEecCC-------------------CCceEEEEEccCCCEEEEEeCCCc-EEEEe
Q 009614          439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-------------------REIVSAVCYCPDGKGGIVGTMTGN-CRFYD  498 (531)
Q Consensus       439 ~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~-------------------~~~v~~v~~spdg~~l~sgs~dg~-I~iwd  498 (531)
                       |+++||.. .++.+++|+..+++.......                   ......+.|+|||++|+....|.. +..|.
T Consensus       122 -DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         122 -VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             -STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             -CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence             99999985 567999999998876643211                   123456889999999999876644 44443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2e-06  Score=79.44  Aligned_cols=217  Identities=10%  Similarity=0.070  Sum_probs=130.9

Q ss_pred             eccccceeeeCCCCeEEeeecC---CeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 009614          235 IDRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRV  310 (531)
Q Consensus       235 ~~~~~s~~fspdg~~lasgs~d---g~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~i  310 (531)
                      ...+.+.+|||||+.||-....   ..+.+.+......        ..+..+.+.+....|+|+|+.|+.... ++...+
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--------eEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            3444567899999999864332   2455555543322        235567788999999999998876553 333322


Q ss_pred             EEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCC
Q 009614          311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE  390 (531)
Q Consensus       311 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  390 (531)
                      +.......                                                             .......+...
T Consensus       110 ~~~~~~~~-------------------------------------------------------------~~~~~~~~~~~  128 (269)
T d2hqsa1         110 YVMDLASG-------------------------------------------------------------QIRQVTDGRSN  128 (269)
T ss_dssp             EEEETTTC-------------------------------------------------------------CEEECCCCSSC
T ss_pred             eecccccc-------------------------------------------------------------cceeeeecccc
Confidence            22211110                                                             00111112233


Q ss_pred             eeEEEEcCCC--eEEEEeCCCc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---eEEEEeCCCCeE
Q 009614          391 VLDLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQV  463 (531)
Q Consensus       391 I~~l~~sp~~--~l~s~s~Dg~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---~I~Iwd~~~~~~  463 (531)
                      .....+++.+  .+++...++.  |.+.++..+.......+........|+| ++..++..+.++   .|.+.+...+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         129 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccccccccccccceecccccCCceEeeeecccccceeeeccccccccccccc-ccceeEEEeecCCceeeeEeecccccc
Confidence            3344555655  5555555554  5566666665555555677788889999 888877766544   455556665554


Q ss_pred             EEecCCCCceEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEeeC
Q 009614          464 VDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVKI  531 (531)
Q Consensus       464 ~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p~  531 (531)
                       .............|+|||++|+..+..   ..|+++++..+...+-..         ....+...+|+|.
T Consensus       208 -~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~---------~~g~~~~p~WSP~  268 (269)
T d2hqsa1         208 -QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA---------TDGQVKFPAWSPY  268 (269)
T ss_dssp             -EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC---------SSSEEEEEEECCC
T ss_pred             -eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC---------CCCcEEeEEeCCC
Confidence             344455566788999999999866543   458999998776543111         1246667788884

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.77  E-value=6.7e-08  Score=96.28  Aligned_cols=190  Identities=13%  Similarity=0.071  Sum_probs=117.0

Q ss_pred             EEeeecCCeEEEEeCCCCccccc---------ccc--------------cceEEcccCCCEEEEEEccCCCEEEEEe-CC
Q 009614          250 LTLGQRMRRVRVHPVKKQSRELS---------SLY--------------TGQEFLAHEGSILTMKFSLDGQYLASGG-ED  305 (531)
Q Consensus       250 lasgs~dg~I~vwd~~~~~~~~~---------~~~--------------~~~~l~~H~~~I~~l~fspdg~~Lasgs-~D  305 (531)
                      +++|+.+|.|+||++........         ..+              ....-..|...+....++|||++|+... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788999999999875432110         000              0000122444566666789999986664 68


Q ss_pred             CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEee
Q 009614          306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ  385 (531)
Q Consensus       306 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (531)
                      ..|.++|+.+++....+..+                                                            
T Consensus        94 ~rVavIDl~t~k~~~ii~iP------------------------------------------------------------  113 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIP------------------------------------------------------------  113 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECT------------------------------------------------------------
T ss_pred             CEEEEEECCCCcEeeEEecC------------------------------------------------------------
Confidence            89999999988765544322                                                            


Q ss_pred             cCCCCeeEEEEcCCC---eEEEEeCC-----------------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE
Q 009614          386 GHSSEVLDLSWSKNG---FLLSSSAD-----------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       386 ~h~~~I~~l~~sp~~---~l~s~s~D-----------------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~  445 (531)
                       +...+..++++|++   +++..+.+                 ..+..+|..+.+....+.-...+..+.|+| ++++++
T Consensus       114 -~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~sp-dGk~a~  191 (441)
T d1qnia2         114 -NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADY-TGKYAT  191 (441)
T ss_dssp             -TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECS-SSSEEE
T ss_pred             -CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECC-CCCEEE
Confidence             12234444455444   22222211                 123456777777666665555667778888 777776


Q ss_pred             EEeCC-----------------------------------------CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCE
Q 009614          446 SGSID-----------------------------------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG  484 (531)
Q Consensus       446 sgs~D-----------------------------------------g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~  484 (531)
                      +.+.+                                         +.+.|++....+++.+.........+.++|||++
T Consensus       192 vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGky  271 (441)
T d1qnia2         192 STCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKY  271 (441)
T ss_dssp             EEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCE
T ss_pred             EEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCE
Confidence            66543                                         3445555555455544444455678999999998


Q ss_pred             EEE-EeCCCcEEEEeCCC
Q 009614          485 GIV-GTMTGNCRFYDIKD  501 (531)
Q Consensus       485 l~s-gs~dg~I~iwd~~~  501 (531)
                      +++ +..+++|.+||+.+
T Consensus       272 l~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         272 FIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEEECTTSSBEEEEEGGG
T ss_pred             EEEeCCcCCcEEEEEeeh
Confidence            755 56799999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.74  E-value=2e-08  Score=98.53  Aligned_cols=88  Identities=7%  Similarity=0.019  Sum_probs=66.4

Q ss_pred             eeEEEEcCCC-eEEEEe-CC--------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC--EEEEEeCCCeEEEEeC
Q 009614          391 VLDLSWSKNG-FLLSSS-AD--------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEV  458 (531)
Q Consensus       391 I~~l~~sp~~-~l~s~s-~D--------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~--~l~sgs~Dg~I~Iwd~  458 (531)
                      ...+++++++ .++... .+        ..|.+||..+++.+..+.+...+.+++|+| |++  +++++..|+.|+|||.
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEES
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEEC
Confidence            3457788887 433332 11        359999999999999888778899999999 876  3567778999999999


Q ss_pred             CCCeEEEecCCCCceEEEEEc
Q 009614          459 RRCQVVDYTDIREIVSAVCYC  479 (531)
Q Consensus       459 ~~~~~~~~~~~~~~v~~v~~s  479 (531)
                      .+++.+.........+.|++-
T Consensus       345 ~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         345 ASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             SSCEEEEECCCCSCCCEEECC
T ss_pred             CCCCEEEEEECCCCCCEEEEe
Confidence            999998766555555666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.73  E-value=1.1e-07  Score=94.78  Aligned_cols=253  Identities=11%  Similarity=-0.007  Sum_probs=147.9

Q ss_pred             cccceeeeCCCCeEEe-eecCCeEEEEeCCCCcccccccccceEEc-ccCCCEEEEEEccCCC--EEEEEeCCC------
Q 009614          237 RHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQ--YLASGGEDG------  306 (531)
Q Consensus       237 ~~~s~~fspdg~~las-gs~dg~I~vwd~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~--~Lasgs~Dg------  306 (531)
                      ......++|||++|.+ ...+.+|.++|+.+.+.       .+.+. .+...+..++|+|+|+  |++..+.+.      
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~-------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKT-------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcE-------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            3334567899999855 45789999999985442       22232 3567899999999998  555554442      


Q ss_pred             -----------cEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccc----------cc----------
Q 009614          307 -----------TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID----------KT----------  355 (531)
Q Consensus       307 -----------~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----------  355 (531)
                                 .+..+|..+.+....+.... .+..+.+.++.....+..........          ..          
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                       23457777766655555433 34445554444332222111110000          00          


Q ss_pred             -----cccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-e-EEEEeCCCcEEEEECCCCeE-------
Q 009614          356 -----KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRC-------  421 (531)
Q Consensus       356 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~-l~s~s~Dg~V~lwdl~~~~~-------  421 (531)
                           .......++...++....    .+.+..+..+. ....+.++|+| + ++++..+++|.+||+.+...       
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~----~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~  299 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGE----SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE  299 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSS----CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC
T ss_pred             EecCCCEEEeCCCCcEEEEcccC----CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC
Confidence                 001112222333332221    12334444433 35789999999 4 46677899999999865221       


Q ss_pred             ----EEE-eecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCC----------CeEEE-e-----cCCCCceEEEEEcc
Q 009614          422 ----LRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----------CQVVD-Y-----TDIREIVSAVCYCP  480 (531)
Q Consensus       422 ----l~~-~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~----------~~~~~-~-----~~~~~~v~~v~~sp  480 (531)
                          +.- ....-.....+|.+ +++.+.+...|..|..|++..          ..++. +     .+|...+.+.+++|
T Consensus       300 ~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p  378 (441)
T d1qnia2         300 LRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA  378 (441)
T ss_dssp             GGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             cceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC
Confidence                100 01112234468999 888888999999999999741          12332 2     45666666778999


Q ss_pred             CCCEEEEEe---CCC----------cEEEEeCCCCe
Q 009614          481 DGKGGIVGT---MTG----------NCRFYDIKDNQ  503 (531)
Q Consensus       481 dg~~l~sgs---~dg----------~I~iwd~~~~~  503 (531)
                      ||+||++++   .|.          +-.+.|+...+
T Consensus       379 dGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         379 DGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             CCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred             CCcEEEecCccccccCcCCCCCCCccceeEEecCCe
Confidence            999999994   443          24677776543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=9.4e-07  Score=84.02  Aligned_cols=229  Identities=12%  Similarity=0.047  Sum_probs=137.4

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~  319 (531)
                      .++++|||+++++...+++|..|+......         .+....+.+.+++|+++|+++++...++.+.+|+.......
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---------~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQ---------IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEE---------EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCEE---------EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            479999999999999999998888653221         23445678999999999999999888888888887543321


Q ss_pred             -cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCcccccc----Cc--ceeEeecCCCCee
Q 009614          320 -DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL----EK--PLHEFQGHSSEVL  392 (531)
Q Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~h~~~I~  392 (531)
                       ..+...................++....              ....+..++.......    ..  .............
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTADS--------------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEET--------------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             eeeccccCCccccceeEEccCCCEEeecc--------------ccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence             1111111111111222222222222211              1122222221110000    00  0000112223456


Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEECCCCeEE---EEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE--Eec
Q 009614          393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCL---RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT  467 (531)
Q Consensus       393 ~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l---~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~--~~~  467 (531)
                      .+.+..+.++++.+..+.|..+++......   ..+........|++.+ +++++++...+++|..++.......  ...
T Consensus       169 gi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~  247 (302)
T d2p4oa1         169 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAE  247 (302)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred             cccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecC
Confidence            677765547777788899998887654322   2223445567799999 9998888888999999988755433  233


Q ss_pred             CCCCceEEEEE---ccCCCEEEEEeCCC
Q 009614          468 DIREIVSAVCY---CPDGKGGIVGTMTG  492 (531)
Q Consensus       468 ~~~~~v~~v~~---spdg~~l~sgs~dg  492 (531)
                      ..-...++++|   .+|++.|++++..|
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            34456899999   77888888776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.67  E-value=1.1e-05  Score=76.91  Aligned_cols=249  Identities=8%  Similarity=-0.009  Sum_probs=142.8

Q ss_pred             ceeeeCCCCeEEeee-------cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 009614          240 SATLKPGDHELTLGQ-------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK  312 (531)
Q Consensus       240 s~~fspdg~~lasgs-------~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd  312 (531)
                      ..+|.|+|++.++..       .+|+|..|+...........   .......+.-..|.|.++|+.|+++.....|...+
T Consensus        22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEEC---CccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            478999999877532       25678888877654322110   01111223457899999999888887777788888


Q ss_pred             cccCccccceecCCC----CCeeEEEeecCCcceeeeeccccccc-cccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          313 VIEHERLDGFDVQDT----DPSCLYFTINHLSQLIPIDVDKEKID-KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      ...............    .+..+.+  .....+...+....... ..........+.++.++...     + ...+..+
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~--d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-----~-~~~~~~~  170 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-----Q-MIQVDTA  170 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----C-EEEEEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEE--CCCCCEEEecCccCcccccccceeccCCceEEEEeecC-----c-eeEeeCC
Confidence            765432211111111    1122222  22233333322111000 00011112334454444321     1 1122222


Q ss_pred             CCCeeEEEEcCCC-----eE-EEEeCCCcEEEEECCCCeEEE---Eee-----cCCceEEEEEeeCCCCEEEEEeCCCeE
Q 009614          388 SSEVLDLSWSKNG-----FL-LSSSADKTVRLWQVGIDRCLR---VFS-----HNNYVTSVAFNPVDDNYFISGSIDGKV  453 (531)
Q Consensus       388 ~~~I~~l~~sp~~-----~l-~s~s~Dg~V~lwdl~~~~~l~---~~~-----h~~~V~sv~fsp~d~~~l~sgs~Dg~I  453 (531)
                      ...-+.++|+|++     .| ++-+..+.|..||+.....+.   .+.     .....-.|++.+ +++++++....+.|
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I  249 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHI  249 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEE
Confidence            3345678898754     34 445677889888876433222   121     233457899998 89998888888999


Q ss_pred             EEEeCCCCeEEE-ecCCCCceEEEEEccCCCEE-EEEeCCCcEEEEeCC
Q 009614          454 RIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGG-IVGTMTGNCRFYDIK  500 (531)
Q Consensus       454 ~Iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~  500 (531)
                      .+||...++... +......+++++|.||++.| ++.+.+|.|..+++.
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            999998876543 44445678999999999755 556667888877764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.64  E-value=1.6e-05  Score=75.89  Aligned_cols=220  Identities=12%  Similarity=0.077  Sum_probs=133.5

Q ss_pred             ceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC--CcEEEEEc--cc
Q 009614          240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKV--IE  315 (531)
Q Consensus       240 s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D--g~I~iWd~--~~  315 (531)
                      .++|.++|++.++-...++|..|+.......       ..+.........|+|++||+++++...+  ....++.+  ..
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~-------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIK-------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEE-------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEE-------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            4789999998888778899988887643221       1233445678899999999877765432  22222222  11


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS  395 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~  395 (531)
                      .......                                                            .-..-....+.++
T Consensus       117 ~~~~~~~------------------------------------------------------------~~~~~~~~~nd~~  136 (319)
T d2dg1a1         117 DNLQDII------------------------------------------------------------EDLSTAYCIDDMV  136 (319)
T ss_dssp             CSCEEEE------------------------------------------------------------CSSSSCCCEEEEE
T ss_pred             ceeeeec------------------------------------------------------------cCCCcccCCccee
Confidence            1100000                                                            0000122456788


Q ss_pred             EcCCCeEEEEeCC-------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEE-EEEeCCCeEEEEeCCCC-e---E
Q 009614          396 WSKNGFLLSSSAD-------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRC-Q---V  463 (531)
Q Consensus       396 ~sp~~~l~s~s~D-------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l-~sgs~Dg~I~Iwd~~~~-~---~  463 (531)
                      +.++|.|+.+...       +.+..++...+........-...+.|+|+| +++.| ++-+..+.|+.|++... .   .
T Consensus       137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~  215 (319)
T d2dg1a1         137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQP  215 (319)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred             EEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCCCceecc
Confidence            8888844444322       234445544443333333334567899999 77754 55667889999987642 1   1


Q ss_pred             E-----EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEee
Q 009614          464 V-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVVK  530 (531)
Q Consensus       464 ~-----~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~p  530 (531)
                      .     ...........+++.++|++.++....|.|.+||. .|+++..+.++  ++.-.+...++.++|.|
T Consensus       216 ~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P--~~~~~~~~~~~~~~~~~  284 (319)
T d2dg1a1         216 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP--GRDEGHMLRSTHPQFIP  284 (319)
T ss_dssp             EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT--TGGGTCSCBCCEEEECT
T ss_pred             ccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC--CcCCCcCceeeeEEEeC
Confidence            1     12222334678999999998888888999999996 68888776643  32223345667777754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.62  E-value=2e-06  Score=84.11  Aligned_cols=113  Identities=10%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             CCeeEEEEcCCC-eEEEEe-CCCcEEEEECCCCeEEE---Ee---ecCCceEEEEEeeCCCCEEEE-EeCCCeEEEEeCC
Q 009614          389 SEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLR---VF---SHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVR  459 (531)
Q Consensus       389 ~~I~~l~~sp~~-~l~s~s-~Dg~V~lwdl~~~~~l~---~~---~h~~~V~sv~fsp~d~~~l~s-gs~Dg~I~Iwd~~  459 (531)
                      ..+.++.|+|+| +++++. ....|.+|+......+.   ..   ........++|+| +++++++ .-.+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            357899999999 566554 45678888765432221   11   2456788999999 8887755 4568899999987


Q ss_pred             CCeEE---E-----ec------------CCCCceEEEEEccCCCEEEEEeC------CCcEEEEeCCCC
Q 009614          460 RCQVV---D-----YT------------DIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDN  502 (531)
Q Consensus       460 ~~~~~---~-----~~------------~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~~~  502 (531)
                      ..+..   .     ..            ........+.++|||++|+++..      .+.|..|++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence            65321   1     10            11123567899999999988643      223777777543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=2.1e-05  Score=73.34  Aligned_cols=237  Identities=10%  Similarity=0.152  Sum_probs=137.9

Q ss_pred             ccceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCC-CEEEEE-eCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASG-GEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasg-s~Dg~I~iWd~~~  315 (531)
                      ...++++++|+++++-....+|++|+.......  .+.....-.+....-..+++..+. .++++. +.++.|.+++. .
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF--QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEE--EECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEE--EecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            446899999998888778899999986532111  000000001122234556665543 344333 34556766664 3


Q ss_pred             CccccceecCC-CCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe--ecCCCCee
Q 009614          316 HERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF--QGHSSEVL  392 (531)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~  392 (531)
                      +.....+.... ..+..+.  ......++....              ....+.+++..     .+.+..+  ..+.....
T Consensus       102 g~~~~~~~~~~~~~p~~~a--vd~~G~i~v~~~--------------~~~~~~~~~~~-----g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVT--VDNKGRIIVVEC--------------KVMRVIIFDQN-----GNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEE--ECTTSCEEEEET--------------TTTEEEEECTT-----SCEEEEEECTTTCSSEE
T ss_pred             ccceeecCCCcccccceec--cccCCcEEEEee--------------ccceeeEeccC-----Cceeecccccccccccc
Confidence            43333332111 1111222  222222222221              12223333322     1223332  23566788


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEEEEeeCCCCEEEEEeC-CCeEEEEeCCCCeEEE-e
Q 009614          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVD-Y  466 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv~fsp~d~~~l~sgs~-Dg~I~Iwd~~~~~~~~-~  466 (531)
                      .+++.+++ .+++....+.|.+||. .++.+..+.   .......|++.| +++++++-.. ++.|.+|+.. ++.+. +
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~~~~~~  237 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISAL  237 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CCEEEEE
Confidence            89999998 7777778899999997 456677775   345678999999 8888877654 4579999854 55542 2


Q ss_pred             --cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          467 --TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       467 --~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                        .......+.|++.|||.+ +++..++.|++|.....
T Consensus       238 ~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred             eCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeee
Confidence              223346789999999975 45567899999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.55  E-value=6.5e-06  Score=80.34  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             CCCeeEEEEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEee--------------------cCCceEEEEEeeCCCCEEE
Q 009614          388 SSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS--------------------HNNYVTSVAFNPVDDNYFI  445 (531)
Q Consensus       388 ~~~I~~l~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~~~~--------------------h~~~V~sv~fsp~d~~~l~  445 (531)
                      ......++|+|++ ++ ++.-.+++|.+|++..+.......                    +......|.++| ++++|+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence            3467889999999 44 555678999999987654322211                    122356789999 999888


Q ss_pred             EEeC------CCeEEEEeCCCCe-EE------EecCCCCceEEEEEcc-CCCEEEEEe-CCCcEEEEeCCCCeEEE
Q 009614          446 SGSI------DGKVRIWEVRRCQ-VV------DYTDIREIVSAVCYCP-DGKGGIVGT-MTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       446 sgs~------Dg~I~Iwd~~~~~-~~------~~~~~~~~v~~v~~sp-dg~~l~sgs-~dg~I~iwd~~~~~l~~  506 (531)
                      ++..      .+.|.+|++.... +.      ...........++++| +|++|+++. .++.|.+|+++...+..
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~  346 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHR  346 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEE
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcE
Confidence            7642      2347778776532 11      1222334567799998 899887765 57889999887665433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=1.2e-05  Score=74.39  Aligned_cols=233  Identities=8%  Similarity=-0.032  Sum_probs=135.5

Q ss_pred             cceeeeCCCCeEEe-eecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          239 GSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       239 ~s~~fspdg~~las-gs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      ..++++++|...++ ....++|..++..........      ..+ ......|+++++|+++++....+.|++++-.+..
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~------~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------FNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECC------CCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec------cCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence            35899999997665 445577777766643322111      111 1235678999999988887777777776654443


Q ss_pred             cccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEc
Q 009614          318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS  397 (531)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s  397 (531)
                      ....... ...+..+.+  .....++..+...              ..+..+........   ... .........|++.
T Consensus        90 ~~~~~~~-~~~p~~iav--d~~g~i~v~d~~~--------------~~~~~~~~~~~~~~---~~~-~~~~~~p~~i~~~  148 (260)
T d1rwia_          90 TVLPFDG-LNYPEGLAV--DTQGAVYVADRGN--------------NRVVKLAAGSKTQT---VLP-FTGLNDPDGVAVD  148 (260)
T ss_dssp             EECCCCS-CCSEEEEEE--CTTCCEEEEEGGG--------------TEEEEECTTCSSCE---ECC-CCSCCSCCEEEEC
T ss_pred             eeeeeee-eeecccccc--cccceeEeecccc--------------ccccccccccceee---eee-ecccCCcceeeec
Confidence            3322211 111222222  2222333322211              12222222111000   000 1112345688999


Q ss_pred             CCC-eEEEEeCCCcEEEEECCCCeEEEEe-ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe-cCCCCceE
Q 009614          398 KNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVS  474 (531)
Q Consensus       398 p~~-~l~s~s~Dg~V~lwdl~~~~~l~~~-~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~-~~~~~~v~  474 (531)
                      +++ .+++...++.|..++.......... ..-.....|++.+ +++++++....+.|..++......... ...-....
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~  227 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL  227 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEE
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeE
Confidence            988 7777778888999998765443322 3456678999999 889888888888999998766543322 22234578


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCC
Q 009614          475 AVCYCPDGKGGIVGTMTGNCRFYDIK  500 (531)
Q Consensus       475 ~v~~spdg~~l~sgs~dg~I~iwd~~  500 (531)
                      .|++.++|.++++-..+++|+.++..
T Consensus       228 ~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         228 AVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            99999999887776667777766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.39  E-value=0.00012  Score=67.93  Aligned_cols=201  Identities=12%  Similarity=0.127  Sum_probs=125.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCC------CCeeEEEeecCCcceeeeeccccccccccccc
Q 009614          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR  359 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (531)
                      .-..|+++++|+++++-..+..|++||.. ++.+..+.....      .+..+.+.......++.              .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~   88 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT--------------E   88 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE--------------E
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccccccccee--------------c
Confidence            46799999999988887778899999964 554444322111      01111111111111111              1


Q ss_pred             cCCCceEEEeCCccccccCcceeEee-cCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee---cCCceEEE
Q 009614          360 KSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSV  434 (531)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~---h~~~V~sv  434 (531)
                      ......+..++..     ......+. ........+++.+++ ++++....+.+.+++. .++.+..+.   +......+
T Consensus        89 ~~~~~~i~~~~~~-----g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i  162 (279)
T d1q7fa_          89 RSPTHQIQIYNQY-----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV  162 (279)
T ss_dssp             CGGGCEEEEECTT-----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred             cCCcccccccccc-----ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeeccccccccccccee
Confidence            1112223333221     12222232 234567789999988 6666666677888875 456666664   55678899


Q ss_pred             EEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEe--cCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEEee
Q 009614          435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQ  509 (531)
Q Consensus       435 ~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~~~~l~~~~~  509 (531)
                      ++.+ +++++++....+.|++||.....+..+  .+.......|++.|+|+++++-.. ++.|.+|+. +|+++..+.
T Consensus       163 ~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         163 VVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eecc-ceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            9998 888998988899999999876544443  234456889999999997777554 456999985 577766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.25  E-value=0.00031  Score=65.78  Aligned_cols=210  Identities=14%  Similarity=0.125  Sum_probs=134.8

Q ss_pred             eeeeCC-CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccc
Q 009614          241 ATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL  319 (531)
Q Consensus       241 ~~fspd-g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~  319 (531)
                      ..|++. +.+..+--..++|..|+..++....         ......+.++++.++|.++++ +.+| |.++|..+++..
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---------~~~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~   91 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKTV---------HALPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLT   91 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---------EECSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEEE---------EECCCCcEEEEEecCCCEEEE-EeCc-cEEeecccceee
Confidence            356764 4444554567889999887654321         123456889999999876664 4554 788888776531


Q ss_pred             cceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCC
Q 009614          320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN  399 (531)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~  399 (531)
                      .-.....                                                          ......++++.+.|+
T Consensus        92 ~l~~~~~----------------------------------------------------------~~~~~~~nd~~vd~~  113 (295)
T d2ghsa1          92 LHAELES----------------------------------------------------------DLPGNRSNDGRMHPS  113 (295)
T ss_dssp             EEECSST----------------------------------------------------------TCTTEEEEEEEECTT
T ss_pred             EEeeeec----------------------------------------------------------CCCcccceeeEECCC
Confidence            1100000                                                          001224677888888


Q ss_pred             CeEEEEeC-----CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeCCCC------e--E-E
Q 009614          400 GFLLSSSA-----DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRC------Q--V-V  464 (531)
Q Consensus       400 ~~l~s~s~-----Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~~~~------~--~-~  464 (531)
                      |.|..++.     .+.-.+|.+..++....+..-...+.++|+| +++ ++++-+..+.|..|++...      +  . +
T Consensus       114 G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~  192 (295)
T d2ghsa1         114 GALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  192 (295)
T ss_dssp             SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             CCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEe
Confidence            84444432     2345677777777666665445568899999 666 4556667889999987431      1  1 1


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeeecccccCCCceeeeEEEe
Q 009614          465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQVV  529 (531)
Q Consensus       465 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~~~~~kk~~~~~It~l~f~  529 (531)
                      ...+.......+++..+|++.++.-..|.|..||. .++++..++++        ...+|+++|.
T Consensus       193 ~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP--------~~~~T~~~FG  248 (295)
T d2ghsa1         193 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--------GKQTTCPAFI  248 (295)
T ss_dssp             ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--------CSBEEEEEEE
T ss_pred             ccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC--------CCceEEEEEe
Confidence            33445566889999999998777777888999995 58888776643        3467888774

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=0.0011  Score=60.13  Aligned_cols=120  Identities=13%  Similarity=0.062  Sum_probs=76.5

Q ss_pred             eecCCCCeeEEEEcCCC-eEEEEe-CCCc--EEEEECCCCeEEEEeecCCceEEEEEeeCCCC-EEEEEeCCC--eEEEE
Q 009614          384 FQGHSSEVLDLSWSKNG-FLLSSS-ADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDG--KVRIW  456 (531)
Q Consensus       384 ~~~h~~~I~~l~~sp~~-~l~s~s-~Dg~--V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~-~l~sgs~Dg--~I~Iw  456 (531)
                      +..+.+.+....|+|+| .++... .++.  +..+.....................+++ ++. .+++...+|  .|.+.
T Consensus        78 ~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          78 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             EeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecccccccccccc-ccccceecccccCCceEeee
Confidence            34466778889999999 554443 3333  3334444444444445555666667777 554 444444555  46666


Q ss_pred             eCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeE
Q 009614          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQL  504 (531)
Q Consensus       457 d~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~~~~l  504 (531)
                      ++..+................|+|+++.++..+.++   .+.+++...+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         157 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             ETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc
Confidence            777776666666777788899999999988876654   355556655543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=0.00054  Score=62.61  Aligned_cols=196  Identities=11%  Similarity=-0.024  Sum_probs=114.7

Q ss_pred             CCEEEEEEccCCCEEEEE-eCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCC
Q 009614          285 GSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD  363 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (531)
                      ..-.+|++.++|+..++. +..+.|..++................+..+.+..+  ..++..+              ...
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~--g~i~v~d--------------~~~   77 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA--GTVYVTD--------------FNN   77 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT--CCEEEEE--------------TTT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCC--CCEEEee--------------eee
Confidence            345899999999966654 45577777765443322211111222333433322  2222222              112


Q ss_pred             ceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEE-eecCCceEEEEEeeCCC
Q 009614          364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDD  441 (531)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~-~~h~~~V~sv~fsp~d~  441 (531)
                      ..+.+++.....    .+.. ........+|++.+++ ++++-.....+..++......... .........|+++| ++
T Consensus        78 ~~i~~~~~~~~~----~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g  151 (260)
T d1rwia_          78 RVVTLAAGSNNQ----TVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SG  151 (260)
T ss_dssp             EEEEECTTCSCC----EECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TC
T ss_pred             ceeeeeeeccce----eeee-eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CC
Confidence            222222221110    0111 1123457889999988 555555566677777654332221 12234567899999 88


Q ss_pred             CEEEEEeCCCeEEEEeCCCCeEEEe-cCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          442 NYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       442 ~~l~sgs~Dg~I~Iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      +++++...++.|..++........+ ...-.....|++.++|+++++....+.|..++....
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             CEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            9988888899999999887665543 344466789999999998888888888988887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.07  E-value=0.00034  Score=65.60  Aligned_cols=194  Identities=10%  Similarity=-0.011  Sum_probs=117.7

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCce
Q 009614          286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT  365 (531)
Q Consensus       286 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (531)
                      .+..++++|||+++++...+++|..|+....  ...+......+..+.+.++.  .++........+             
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG--~l~v~~~~~~~~-------------   91 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNG--DLVATGWNADSI-------------   91 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTS--CEEEEEECTTSC-------------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCC--CeEEEecCCceE-------------
Confidence            5788999999999999999998888875433  22233333334444444332  233332222211             


Q ss_pred             EEEeCCccccccCcceeEe--ecCCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-----------cCCce
Q 009614          366 CVVLPPKVFRLLEKPLHEF--QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----------HNNYV  431 (531)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-----------h~~~V  431 (531)
                       ..+......   .....+  .......+.+++.+++ ++++.+.++.+..++...+.......           .....
T Consensus        92 -~~~~~~~~~---~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          92 -PVVSLVKSD---GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             -EEEEEECTT---SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             -EEEEecccc---cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence             111100000   001111  1234567899999999 77777788889999988775443321           12345


Q ss_pred             EEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE---EecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 009614          432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN  502 (531)
Q Consensus       432 ~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~  502 (531)
                      ..+.+..  ..++++.+..+.|..+++......   ...........+++.++|+++++...++.|..|+....
T Consensus       168 ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         168 NGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             ccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            6666653  456677778889999887764322   11122334567999999998888888999999987643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.06  E-value=0.0003  Score=64.38  Aligned_cols=234  Identities=11%  Similarity=0.077  Sum_probs=114.7

Q ss_pred             eeeCC--CCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC-CC-----cEEEEEc
Q 009614          242 TLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG-----TVRVWKV  313 (531)
Q Consensus       242 ~fspd--g~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg-----~I~iWd~  313 (531)
                      .++|+  |+.+|-. .+|.|.+.++..+..        +.|..+.+.+...+|||||+.||-... ++     .|.+++.
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~--------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCE--------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            56888  9988765 456788888885543        235567778899999999999886542 22     3666666


Q ss_pred             ccCccccceecC------CCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecC
Q 009614          314 IEHERLDGFDVQ------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH  387 (531)
Q Consensus       314 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  387 (531)
                      .+++........      ........+.++....++.......          .........+..     ....  ...+
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----------~~~~~~~~~~~~-----~~~~--~~~~  138 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF----------SSMTCLYRVEND-----GINF--VPLN  138 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS----------TTCCEEEEEEGG-----GTEE--EECC
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC----------ccceeeeeecCC-----Ccee--EEec
Confidence            666543211100      0011122222222111111000000          000001111110     0111  1112


Q ss_pred             CCCeeEEEEcCCC--eEEEEeCC-----------CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCC--Ce
Q 009614          388 SSEVLDLSWSKNG--FLLSSSAD-----------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--GK  452 (531)
Q Consensus       388 ~~~I~~l~~sp~~--~l~s~s~D-----------g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~D--g~  452 (531)
                      ......+ +.+++  .++.....           ....++............+........+.+ + .++.....+  ..
T Consensus       139 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  215 (281)
T d1k32a2         139 LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQ  215 (281)
T ss_dssp             SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCE
T ss_pred             CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec-c-ccceecccccccc
Confidence            2222233 33444  33322211           112222222333333333445555566665 3 233333333  35


Q ss_pred             EEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       453 I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      |.++|+.++....+..... .....|+|||+.|+.. .+|.|+++|+.+++...
T Consensus       216 l~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         216 IYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             eEEEeCCCCceEEeecCCC-cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            7888888877665544332 2234689999998764 47889999999887653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.00012  Score=73.44  Aligned_cols=200  Identities=12%  Similarity=0.116  Sum_probs=114.7

Q ss_pred             eeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeC---------CCcEEEEE
Q 009614          242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVWK  312 (531)
Q Consensus       242 ~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~I~iWd  312 (531)
                      .|.+++.++.. ..+|.|.+|+........  +.....+  ..-.+....||||+++++.+..         .+.+.++|
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~--l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTV--LIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEE--EECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEE--EEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            45666665543 456789999887654321  1011111  2235677889999999887643         34455556


Q ss_pred             cccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCCCCee
Q 009614          313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL  392 (531)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  392 (531)
                      +.++....                                                            +.........+.
T Consensus        98 ~~~~~~~~------------------------------------------------------------l~~~~~~~~~l~  117 (465)
T d1xfda1          98 IPHGDPQS------------------------------------------------------------LDPPEVSNAKLQ  117 (465)
T ss_dssp             SSSCCCEE------------------------------------------------------------CCCTTCCSCCCS
T ss_pred             ccCCceee------------------------------------------------------------ccCccCCccccc
Confidence            55443210                                                            111111233455


Q ss_pred             EEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee--cCC-----------------ceEEEEEeeCCCCEEEEEeCC-C
Q 009614          393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNN-----------------YVTSVAFNPVDDNYFISGSID-G  451 (531)
Q Consensus       393 ~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~--h~~-----------------~V~sv~fsp~d~~~l~sgs~D-g  451 (531)
                      ...|+|+| .|+-.. ++.|.+.+..++..++...  ...                 .-..+.|+| |+++||....| .
T Consensus       118 ~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s  195 (465)
T d1xfda1         118 YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDS  195 (465)
T ss_dssp             BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECT
T ss_pred             eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEeccc
Confidence            67899999 666554 5678888887766655442  111                 125778999 99999886532 2


Q ss_pred             eE---------------------------------EEEeCCCCeEEE-e------cCCCCceEEEEEccCCCEEEEEeC-
Q 009614          452 KV---------------------------------RIWEVRRCQVVD-Y------TDIREIVSAVCYCPDGKGGIVGTM-  490 (531)
Q Consensus       452 ~I---------------------------------~Iwd~~~~~~~~-~------~~~~~~v~~v~~spdg~~l~sgs~-  490 (531)
                      .|                                 .|+|+.++.... .      ......+..+.|+|++++++.... 
T Consensus       196 ~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR  275 (465)
T d1xfda1         196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR  275 (465)
T ss_dssp             TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred             ccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc
Confidence            23                                 333333322110 0      011123678899999987666443 


Q ss_pred             C---CcEEEEeCCCCeEEEEe
Q 009614          491 T---GNCRFYDIKDNQLYQQN  508 (531)
Q Consensus       491 d---g~I~iwd~~~~~l~~~~  508 (531)
                      +   ..+.++|+.+++.....
T Consensus       276 ~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         276 AQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             TSCEEEEEEEETTTCCEEEEE
T ss_pred             ccccceEEEEcCCCCcEEEEE
Confidence            2   24888999999876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.73  E-value=0.0041  Score=58.40  Aligned_cols=154  Identities=12%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCc
Q 009614          285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL  364 (531)
Q Consensus       285 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (531)
                      ..+..++|.++|++.++-...+.|..|+..++...                                             
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~---------------------------------------------   74 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------------------------   74 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------------------------
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE---------------------------------------------
Confidence            34568999999997777667888887776543211                                             


Q ss_pred             eEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC-eEEEEeC----CCcEEEEECCCCeEEEEeec---CCceEEEEE
Q 009614          365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA----DKTVRLWQVGIDRCLRVFSH---NNYVTSVAF  436 (531)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~-~l~s~s~----Dg~V~lwdl~~~~~l~~~~h---~~~V~sv~f  436 (531)
                                       ..+.........|++.++| ++++...    .+.|...+..+........+   ......+++
T Consensus        75 -----------------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~  137 (319)
T d2dg1a1          75 -----------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF  137 (319)
T ss_dssp             -----------------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred             -----------------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeE
Confidence                             1111223456789999999 4444332    23355555555554444432   345788999


Q ss_pred             eeCCCCEEEEEeC------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEE-EeCCCcEEEEeCCC
Q 009614          437 NPVDDNYFISGSI------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKD  501 (531)
Q Consensus       437 sp~d~~~l~sgs~------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs~dg~I~iwd~~~  501 (531)
                      .| ++++.++...      .+.+..++...+.+......-...+.++|+||++.|++ -+..+.|+.|++..
T Consensus       138 d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         138 DS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             Ee-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            99 8887776432      23466666655544433333345688999999986644 45678999999764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.59  E-value=0.0053  Score=57.52  Aligned_cols=206  Identities=9%  Similarity=0.082  Sum_probs=110.1

Q ss_pred             cceeeeCCCCeEEeeecCCeEEEEeCCCCcccccccccceEEcccC-CCEEEEEEccCCCEEEEEeCC------------
Q 009614          239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGED------------  305 (531)
Q Consensus       239 ~s~~fspdg~~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~D------------  305 (531)
                      ..++|.+++..++++...+.|...+.......+...    ...+.. ...+.+++.++|++.++-...            
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~----~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK----DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB----CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec----cccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence            358999999988877777778888876544332110    001111 135789999999887764321            


Q ss_pred             -CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccc-cccCc-cee
Q 009614          306 -GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF-RLLEK-PLH  382 (531)
Q Consensus       306 -g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~  382 (531)
                       ..=+||.+........+......+..+.+.+.....           .....+..+....++.++...- .+..+ ...
T Consensus       150 ~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~-----------~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGR-----------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSC-----------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcc-----------eeEEEEEeecccceEEeeccCccccceeeEEE
Confidence             111233322111111111111112223333322110           0111122233334444332110 01001 111


Q ss_pred             Eeec-CCCCeeEEEEcCCC-eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCC-EEEEEeCCCeEEEEeC
Q 009614          383 EFQG-HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEV  458 (531)
Q Consensus       383 ~~~~-h~~~I~~l~~sp~~-~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~-~l~sgs~Dg~I~Iwd~  458 (531)
                      .+.+ +......|++..+| ++++....+.|.+||...++.+..+. ....+++++|.| +++ ++++.+..|.|..+++
T Consensus       219 ~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred             EccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEEC
Confidence            2222 22345679999999 55666678899999998888777665 346789999999 776 6677777888888886


Q ss_pred             CC
Q 009614          459 RR  460 (531)
Q Consensus       459 ~~  460 (531)
                      ..
T Consensus       298 ~~  299 (314)
T d1pjxa_         298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.45  E-value=0.02  Score=52.82  Aligned_cols=98  Identities=8%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CeeEEEEcCCC--eEEEEeCCCcEEEEECCCC------eEEEEe---ecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGID------RCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       390 ~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~------~~l~~~---~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      ..+.++|++++  ++++-+..+.|..|++...      +.....   ........+++.. ++++.++.-..+.|..||.
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC
Confidence            45678999988  5566677888999987532      111111   1345678899998 8998888878899999996


Q ss_pred             CCCeEE-EecCCCCceEEEEEc-cCCCEEEEEe
Q 009614          459 RRCQVV-DYTDIREIVSAVCYC-PDGKGGIVGT  489 (531)
Q Consensus       459 ~~~~~~-~~~~~~~~v~~v~~s-pdg~~l~sgs  489 (531)
                      . ++.+ .+.-....++++||- ||.+.|++.+
T Consensus       228 ~-G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 D-GNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             T-CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             C-CcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            5 5555 444444679999996 6776665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.025  Score=55.94  Aligned_cols=239  Identities=9%  Similarity=0.072  Sum_probs=118.9

Q ss_pred             eeeeCCCCeEEeee---------cCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 009614          241 ATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW  311 (531)
Q Consensus       241 ~~fspdg~~lasgs---------~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW  311 (531)
                      ..|+||+++++...         ..+.+.++|+.++....  +.   ........+....|||||+.||-.. ++.|.+.
T Consensus        66 ~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--l~---~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--LD---PPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--CC---CTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             eEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--cc---CccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            57899999887753         35678888987654321  10   1122344566789999999998775 5667777


Q ss_pred             EcccCccccceecCCC------------------CCeeEEEeecCCcceeeeecccccccc-----------------cc
Q 009614          312 KVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDK-----------------TK  356 (531)
Q Consensus       312 d~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~  356 (531)
                      +..++...+.......                  ....+.|+++....++. ..+......                 .+
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~-~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA-AINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE-EEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE-Eecccccceeecccccccccceeeeeec
Confidence            7766554332221111                  11234455555443332 111111100                 00


Q ss_pred             ccccCCC--ceEEEeCCccccc--cCcceeEeecCCCCeeEEEEcCCC-eEEE-EeCC---CcEEEEECCCCeEEEEee-
Q 009614          357 SLRKSSD--LTCVVLPPKVFRL--LEKPLHEFQGHSSEVLDLSWSKNG-FLLS-SSAD---KTVRLWQVGIDRCLRVFS-  426 (531)
Q Consensus       357 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~h~~~I~~l~~sp~~-~l~s-~s~D---g~V~lwdl~~~~~l~~~~-  426 (531)
                      ...+...  ..+.+++......  ...+.........-+..+.|.|++ .++. ...+   ..|.++|..++++...+. 
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence            1111111  1233333321110  001111111223346789999999 3333 2322   258889999998776664 


Q ss_pred             -cCCce----EEEEEeeCCCCEE--EEEe-CCC--eEEEEeCC-------CCeEEEecCCCCceEEE-EEccCCCEEEE
Q 009614          427 -HNNYV----TSVAFNPVDDNYF--ISGS-IDG--KVRIWEVR-------RCQVVDYTDIREIVSAV-CYCPDGKGGIV  487 (531)
Q Consensus       427 -h~~~V----~sv~fsp~d~~~l--~sgs-~Dg--~I~Iwd~~-------~~~~~~~~~~~~~v~~v-~~spdg~~l~s  487 (531)
                       ....|    ....|.| ++..+  +..+ .+|  .++...+.       ...+..+....-.|..+ .|.++++.|..
T Consensus       299 ~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF  376 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF  376 (465)
T ss_dssp             ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred             cCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence             22222    3457888 66632  2222 233  33333321       12222334334445554 68888777654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.78  E-value=0.046  Score=52.38  Aligned_cols=198  Identities=13%  Similarity=0.146  Sum_probs=113.7

Q ss_pred             EEEEEeCCCcEEEEEcccCccccceecCCCCCee--------------------EEEe---------ecCCcceeeeecc
Q 009614          298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC--------------------LYFT---------INHLSQLIPIDVD  348 (531)
Q Consensus       298 ~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~--------------------~~~~---------~~~~~~~~~~~~~  348 (531)
                      .+.||+..|.|+|+-+.+++.+..+......+..                    ..+.         ....... .+...
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~T   93 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFT   93 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEE
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-ccccc
Confidence            3677888999999999888877766543322110                    0000         1111111 12222


Q ss_pred             ccccc-cccccccCCCceEEEeCCccccccCcceeEeecCCCCeeEEEEcCCC---eEEEEeCCC---------------
Q 009614          349 KEKID-KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADK---------------  409 (531)
Q Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~sp~~---~l~s~s~Dg---------------  409 (531)
                      .+..+ +...+....+..+.+.+...+....  +.++ .....+..+...++.   +++..+.+.               
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~k--Ii~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~  170 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDA--ILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  170 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEE--EEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeeeE--EEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhh
Confidence            22222 2223444556666666666654321  1111 233456666665543   777666532               


Q ss_pred             ---cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCC---------------eEEEEeC-------------
Q 009614          410 ---TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---------------KVRIWEV-------------  458 (531)
Q Consensus       410 ---~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg---------------~I~Iwd~-------------  458 (531)
                         .+.++|..+.+......-......+.++| +++++++.+.+.               .+.+++.             
T Consensus       171 y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         171 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             cceEEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence               36778999888877776566677899999 899988877542               2333433             


Q ss_pred             ----------CCC---eEEEecCCCCceEEEEEccCCCEEEEEeC-CCcEEEEeCC
Q 009614          459 ----------RRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK  500 (531)
Q Consensus       459 ----------~~~---~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~  500 (531)
                                +..   ..+.+.........+..+|||+++++++. +.++.++|++
T Consensus       250 eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                      211   11112222334567899999999987664 8899999986

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.76  E-value=0.0077  Score=54.34  Aligned_cols=108  Identities=9%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             EEcCC--C-eEEEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeC-C-----CeEEEEeCCCCeEEE
Q 009614          395 SWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-D-----GKVRIWEVRRCQVVD  465 (531)
Q Consensus       395 ~~sp~--~-~l~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~-D-----g~I~Iwd~~~~~~~~  465 (531)
                      .++|+  | .++..+ ++.|.+.|+.+++..+...+...+...+|+| |++.||-... +     ..|.++++.+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45677  7 555544 4568888999998877767888899999999 9998886532 2     248888888888776


Q ss_pred             ecCCC-------CceEEEEEccCCCEEEEEeCC------CcEEEEeCCCCeE
Q 009614          466 YTDIR-------EIVSAVCYCPDGKGGIVGTMT------GNCRFYDIKDNQL  504 (531)
Q Consensus       466 ~~~~~-------~~v~~v~~spdg~~l~sgs~d------g~I~iwd~~~~~l  504 (531)
                      +....       .....+.|+|||+.|+.....      ..+...+...+..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            54332       245678999999998875442      2355566655544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.22  E-value=0.24  Score=49.90  Aligned_cols=61  Identities=13%  Similarity=0.040  Sum_probs=40.0

Q ss_pred             CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |.|.-+|+.+++.+-.........+-...-.+.++++|+.||.++-+|.++|+.+.++++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence            4577778888776622111111111111224567888999999999999999999888754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.41  Score=42.71  Aligned_cols=234  Identities=6%  Similarity=-0.081  Sum_probs=121.0

Q ss_pred             eEEeeecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcccCccccceecCCC
Q 009614          249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDT  327 (531)
Q Consensus       249 ~lasgs~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-s~Dg~I~iWd~~~~~~~~~~~~~~~  327 (531)
                      +|+-+. .+.|+-.+++.....  .......+..+...|.+|+|.+..+.|.-+ ..++.|+..++........+.....
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~--~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~   79 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             EEEEeC-CCeEEEEECCCcccc--ccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence            444433 346666666543322  122222344455668889999877666554 4567788888765443322222222


Q ss_pred             CCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEe-ecCCCCeeEEEEcCCC-eEE-E
Q 009614          328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLL-S  404 (531)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~sp~~-~l~-s  404 (531)
                      .+..+++.+... .+.....              ....+.+.+...     .....+ ......+..|++.|.. +|+ +
T Consensus        80 ~p~~iAvD~~~~-~lY~~d~--------------~~~~I~~~~~dg-----~~~~~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          80 SPEGIALDHLGR-TIFWTDS--------------QLDRIEVAKMDG-----TQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             CEEEEEEETTTT-EEEEEET--------------TTTEEEEEETTS-----CSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             cccEEEEeccCC-eEEEecc--------------CCCEEEEEecCC-----ceEEEEecccccCCcEEEEecccCcEEEe
Confidence            233333322211 1111111              112222222211     111112 2233567899999866 444 4


Q ss_pred             EeCCCcEEEE--ECCCCeEEEEee-cCCceEEEEEeeCCCCEE-EEEeCCCeEEEEeCCCCeEEEecCCCCceEEEEEcc
Q 009614          405 SSADKTVRLW--QVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP  480 (531)
Q Consensus       405 ~s~Dg~V~lw--dl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l-~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~sp  480 (531)
                      -...+..+||  ++.......... .-.....|++++ ..+.| .+-...++|...++................+|++. 
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-  217 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-  217 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-
T ss_pred             ecCCCCcEEEEecCCCCCceeeeeecccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-
Confidence            3332333444  555443333332 335678999998 45544 55456789999999876544322222334677775 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          481 DGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       481 dg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      ++.+.++-...+.|...|..+++.+..
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCccceE
Confidence            343444444678899999998887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.15  E-value=0.33  Score=49.01  Aligned_cols=61  Identities=16%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |.|.-||+.+++++-...+...+..-..+-.|.+++.|+.||.++.||..+|+++.+++..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            4677888888877622222222222222335678888999999999999999999888754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.97  E-value=0.61  Score=46.56  Aligned_cols=110  Identities=12%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEeecC--Cc-----------------------------------eEEEEEeeCCCCE
Q 009614          401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--NY-----------------------------------VTSVAFNPVDDNY  443 (531)
Q Consensus       401 ~l~s~s~Dg~V~lwdl~~~~~l~~~~h~--~~-----------------------------------V~sv~fsp~d~~~  443 (531)
                      .++.+..+|.+.++|..+++.+......  ..                                   -...+++| +..+
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~  394 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGL  394 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTE
T ss_pred             eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccC-CCCe
Confidence            5677889999999999999887654210  00                                   01356777 5555


Q ss_pred             EEEEeC------------------------------------CCeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEE
Q 009614          444 FISGSI------------------------------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV  487 (531)
Q Consensus       444 l~sgs~------------------------------------Dg~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~s  487 (531)
                      ++....                                    .|.|.-||+.+++++-..........-...-.|.++++
T Consensus       395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~  474 (560)
T d1kv9a2         395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ  474 (560)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred             eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE
Confidence            554332                                    25678889999988732222222222222335668888


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeeee
Q 009614          488 GTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       488 gs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |+.||.++-||..+|+++.++++.
T Consensus       475 G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         475 GTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ECCCCcEEEEECCCCcEeEEEECC
Confidence            999999999999999999888754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.91  E-value=0.26  Score=49.53  Aligned_cols=79  Identities=9%  Similarity=-0.010  Sum_probs=54.0

Q ss_pred             CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCc--eEEEEEccCCC-EE
Q 009614          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI--VSAVCYCPDGK-GG  485 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~--v~~v~~spdg~-~l  485 (531)
                      |.|.-+|+.+++.+....+..+..+-.... .+.++++|+.||.++.+|.++++.+-.......  -.-+.|..||+ ||
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            678999999999988876544433322333 567888899999999999999998832222222  22366777885 55


Q ss_pred             EEE
Q 009614          486 IVG  488 (531)
Q Consensus       486 ~sg  488 (531)
                      ++.
T Consensus       523 ~v~  525 (571)
T d2ad6a1         523 GSM  525 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.41  E-value=0.86  Score=45.56  Aligned_cols=60  Identities=10%  Similarity=0.054  Sum_probs=40.7

Q ss_pred             eEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          452 KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       452 ~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      .|.-||+.+++.+-......+...=..+-.|.+|++|+.||.++.||.++|+.+.+++..
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            566778888777622222111111122336778889999999999999999999887753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.15  E-value=1.2  Score=41.13  Aligned_cols=74  Identities=11%  Similarity=0.065  Sum_probs=47.3

Q ss_pred             eeeeCCCCeEEeeecC-----C------eEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCC-CcE
Q 009614          241 ATLKPGDHELTLGQRM-----R------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTV  308 (531)
Q Consensus       241 ~~fspdg~~lasgs~d-----g------~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~I  308 (531)
                      .....+|+.++.|+..     +      .+.+||..........  .  ....|.....+..+.++|++++.|+.+ ..+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~--~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--V--TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--E--EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--C--CCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            3455678888877642     1      3678998865542110  0  112233334466788999999988765 589


Q ss_pred             EEEEcccCcc
Q 009614          309 RVWKVIEHER  318 (531)
Q Consensus       309 ~iWd~~~~~~  318 (531)
                      .+||..+..-
T Consensus       101 ~~yd~~~~~w  110 (387)
T d1k3ia3         101 SLYDSSSDSW  110 (387)
T ss_dssp             EEEEGGGTEE
T ss_pred             eEecCccCcc
Confidence            9999987654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.96  E-value=0.33  Score=45.24  Aligned_cols=79  Identities=13%  Similarity=0.153  Sum_probs=48.6

Q ss_pred             cEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEE-EEeCCCeEEEEeCCCCeE---EEecCCCCceEEEEEccCCCEE
Q 009614          410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGG  485 (531)
Q Consensus       410 ~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~-sgs~Dg~I~Iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l  485 (531)
                      +..+|....+........-...+.|+++| ++++|+ +-+..++|++|++.....   .........+-.+.+.+++..+
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            34445444554443334446789999999 776554 555678999999875432   2334455667788887643334


Q ss_pred             EEEe
Q 009614          486 IVGT  489 (531)
Q Consensus       486 ~sgs  489 (531)
                      .+++
T Consensus       266 wva~  269 (340)
T d1v04a_         266 WVGC  269 (340)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.93  E-value=0.76  Score=43.66  Aligned_cols=83  Identities=13%  Similarity=0.164  Sum_probs=58.3

Q ss_pred             CCceEEEEEeeCCCCEEEEEe-CCCeEEEEeCCCC------------eEEEecCCCCceEEEEEccCCCEEEEEeCCCcE
Q 009614          428 NNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRC------------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC  494 (531)
Q Consensus       428 ~~~V~sv~fsp~d~~~l~sgs-~Dg~I~Iwd~~~~------------~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I  494 (531)
                      ......+.++| |++++++++ .+.+|.|+|+++-            .++......-.....+|...|....+--.|..|
T Consensus       274 pKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v  352 (459)
T d1fwxa2         274 ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  352 (459)
T ss_dssp             ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             CCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceE
Confidence            34456789999 888877665 5889999999641            122233344566778998888766677789999


Q ss_pred             EEEeCCCC----------eEEEEeeee
Q 009614          495 RFYDIKDN----------QLYQQNQIC  511 (531)
Q Consensus       495 ~iwd~~~~----------~l~~~~~~~  511 (531)
                      .-|++...          .++++..++
T Consensus       353 ~kw~~~~~~~~~~~~~~~~v~~k~~v~  379 (459)
T d1fwxa2         353 VKWNIEDAIRAYAGEKVDPIKDKLDVH  379 (459)
T ss_dssp             EEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             EEEecchhhhhhccccCCcceeccccc
Confidence            99998432          566666553

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.89  E-value=0.54  Score=43.69  Aligned_cols=102  Identities=15%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             eEEEEe---CCCcEEEEECCCCe--E--EEEeec--CCceEEEEEeeCCCCEEEEEeC---C------------CeEEEE
Q 009614          401 FLLSSS---ADKTVRLWQVGIDR--C--LRVFSH--NNYVTSVAFNPVDDNYFISGSI---D------------GKVRIW  456 (531)
Q Consensus       401 ~l~s~s---~Dg~V~lwdl~~~~--~--l~~~~h--~~~V~sv~fsp~d~~~l~sgs~---D------------g~I~Iw  456 (531)
                      +|+...   ...+|.+|++....  .  +.++.+  ....+.|++.. ++.+++|-..   +            +...+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            444443   34668888775332  2  222232  34578899988 8888887311   0            223444


Q ss_pred             eCCCCeEEEecCCCCceEEEEEccCCCEEEEEe-CCCcEEEEeCCCCe
Q 009614          457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQ  503 (531)
Q Consensus       457 d~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~~~~  503 (531)
                      ....++.......-...+.|+++||+++|+++. ..++|++|++....
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            444443332233334678999999998776654 57789999987544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.60  E-value=0.56  Score=46.88  Aligned_cols=80  Identities=6%  Similarity=0.111  Sum_probs=55.3

Q ss_pred             CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce--EEEEEccCCC-EE
Q 009614          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGK-GG  485 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v--~~v~~spdg~-~l  485 (531)
                      |.|.-||+.+++.+..+....+..+-.+.- .+.++++|+.||.++.+|..+++++-.......+  .-+.|..||+ ||
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            678889999999998887555444333444 6778889999999999999999998322222211  2256667885 55


Q ss_pred             EEEe
Q 009614          486 IVGT  489 (531)
Q Consensus       486 ~sgs  489 (531)
                      ++..
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.56  E-value=1.5  Score=39.36  Aligned_cols=223  Identities=15%  Similarity=0.224  Sum_probs=128.6

Q ss_pred             CCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCccccceecCCCCCeeEEEe
Q 009614          256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT  335 (531)
Q Consensus       256 dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  335 (531)
                      ...|.|-|+.+......     +.+.+ .    +.--+|..+.||-=+ ..++.|+|+.+.+.++.+...+.   .++|.
T Consensus        44 ~~~VvIidl~n~~~~~R-----rpi~A-d----sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWk  109 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIR-----RPISA-D----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWK  109 (327)
T ss_dssp             EEEEEEEETTSTTSCEE-----EECCC-S----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEE
T ss_pred             CceEEEEECCCCCccee-----cccch-h----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEE
Confidence            35788888875543211     11111 1    223467777776655 45899999999998888876664   34555


Q ss_pred             ecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeEeecCC----CCeeEEEEcCCC--eEEEE--eC
Q 009614          336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS----SEVLDLSWSKNG--FLLSS--SA  407 (531)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~I~~l~~sp~~--~l~s~--s~  407 (531)
                      +-....+..+.                +..++.|+...   ...|.+.+..|.    ..|..-..+++.  .+++|  ..
T Consensus       110 Wis~~~L~lVT----------------~taVYHW~~~g---~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  170 (327)
T d1utca2         110 WISLNTVALVT----------------DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  170 (327)
T ss_dssp             ESSSSEEEEEC----------------SSEEEEEESSS---SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ecCCCEEEEEc----------------CCceEEEcccC---CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecC
Confidence            54444333221                22455555422   224566666554    356666667776  33332  12


Q ss_pred             ----CCcEEEEECCCCeEEEEeecCCceEEEEEe--eCCCCEEEE---EeCCCeEEEEeCCCC---------eEEEec--
Q 009614          408 ----DKTVRLWQVGIDRCLRVFSHNNYVTSVAFN--PVDDNYFIS---GSIDGKVRIWEVRRC---------QVVDYT--  467 (531)
Q Consensus       408 ----Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fs--p~d~~~l~s---gs~Dg~I~Iwd~~~~---------~~~~~~--  467 (531)
                          .|.+.||..+.+.....-+|...-..+.+.  +....+|+-   +...++++|.++...         +.+...  
T Consensus       171 ~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp  250 (327)
T d1utca2         171 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  250 (327)
T ss_dssp             TTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             CCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC
Confidence                366889988776544333333222222221  100112222   223468999988652         122221  


Q ss_pred             --CCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          468 --DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       468 --~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                        ...+-..++..++.-..+..-+.-|.|++||+.++.++...++.
T Consensus       251 pea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs  296 (327)
T d1utca2         251 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  296 (327)
T ss_dssp             TTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             ccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence              12344677888888889999999999999999999999877654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.53  E-value=0.98  Score=41.88  Aligned_cols=114  Identities=14%  Similarity=0.107  Sum_probs=73.8

Q ss_pred             eEEEEcCCC-eEEEEeCC-CcEEEEECCCCeEEEEee--cCCceEEEEEeeCCCCEEEEEeCC------CeEEEEeCCCC
Q 009614          392 LDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRC  461 (531)
Q Consensus       392 ~~l~~sp~~-~l~s~s~D-g~V~lwdl~~~~~l~~~~--h~~~V~sv~fsp~d~~~l~sgs~D------g~I~Iwd~~~~  461 (531)
                      ...++.+++ +++.|+.+ ..+.+||..+......-.  ....-.+++..+ ++++++.|+.+      ..+.+||..+.
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence            355677888 66666544 679999998877654322  222234566666 88998888753      36899999987


Q ss_pred             eEEEecCCC---------------CceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 009614          462 QVVDYTDIR---------------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ  506 (531)
Q Consensus       462 ~~~~~~~~~---------------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~  506 (531)
                      +-.......               ..-..+..-++|+.++.+..++.+.+++..+.....
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~  217 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  217 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence            654322110               011223345678888888888888889988776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.51  E-value=0.53  Score=47.16  Aligned_cols=80  Identities=14%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCCce--EEEEEccCCC-EE
Q 009614          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGK-GG  485 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~~v--~~v~~spdg~-~l  485 (531)
                      |.|.-||+.+++.+..+.+..+...=...- .+.++++|+.||.++.+|..+++.+-.......+  .-+.|..||+ ||
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568899999999998887554433222333 6788889999999999999999988322222211  1255667886 44


Q ss_pred             EEEe
Q 009614          486 IVGT  489 (531)
Q Consensus       486 ~sgs  489 (531)
                      ++.+
T Consensus       536 ~v~~  539 (573)
T d1kb0a2         536 SVAV  539 (573)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.11  E-value=0.82  Score=45.82  Aligned_cols=80  Identities=10%  Similarity=0.077  Sum_probs=56.1

Q ss_pred             CCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCCCC--ceEEEEEccCCC-E
Q 009614          408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--IVSAVCYCPDGK-G  484 (531)
Q Consensus       408 Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~~~--~v~~v~~spdg~-~  484 (531)
                      .|.|.-+|+.+++.+..+....++..-.... .+.++++|+.||.++.+|..+++++-......  .-.-+.|..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678899999999998887555544333444 67788889999999999999999983222222  122267778885 5


Q ss_pred             EEEE
Q 009614          485 GIVG  488 (531)
Q Consensus       485 l~sg  488 (531)
                      |++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.49  E-value=0.65  Score=46.73  Aligned_cols=78  Identities=10%  Similarity=0.073  Sum_probs=53.9

Q ss_pred             CcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEecCC--CCceEEEEEccCCC-EE
Q 009614          409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPDGK-GG  485 (531)
Q Consensus       409 g~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~~~--~~~v~~v~~spdg~-~l  485 (531)
                      |.|.-||+.+++.+....+..++.+-.+.. .+.+++.|+.||.++.+|..+++++-....  ...-.-+.|..||+ ||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            679999999999887776555444333444 677888899999999999999999832221  11122255667885 45


Q ss_pred             EE
Q 009614          486 IV  487 (531)
Q Consensus       486 ~s  487 (531)
                      ++
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.05  E-value=3.3  Score=38.13  Aligned_cols=120  Identities=15%  Similarity=0.253  Sum_probs=76.9

Q ss_pred             eeEEEE--cCC-C--eEEEEeCCCcEEEEECC---CC----eEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeC
Q 009614          391 VLDLSW--SKN-G--FLLSSSADKTVRLWQVG---ID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV  458 (531)
Q Consensus       391 I~~l~~--sp~-~--~l~s~s~Dg~V~lwdl~---~~----~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~  458 (531)
                      +..+++  ++. +  +++....+|.+..|.+.   .+    +.++.|.....+..+.+.+ ....|+.+-.+.-|..++.
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd-e~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD-EYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEEES
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC-CCCcEEEecCccceEEEEe
Confidence            445554  553 4  56677788888888763   22    4566777788899999998 7778888877776666665


Q ss_pred             C-----CCeEEEec---CCCCceEEEEE--ccCCC-EEEEE-eCCCcEEEEeCCC-CeEEEEeeee
Q 009614          459 R-----RCQVVDYT---DIREIVSAVCY--CPDGK-GGIVG-TMTGNCRFYDIKD-NQLYQQNQIC  511 (531)
Q Consensus       459 ~-----~~~~~~~~---~~~~~v~~v~~--spdg~-~l~sg-s~dg~I~iwd~~~-~~l~~~~~~~  511 (531)
                      .     ....+...   ....-+-.|+.  .+++. ||++. -.+++..|||..+ .+.+-.+++.
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i~  274 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQIT  274 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEEe
Confidence            4     22333222   23445665653  44444 44444 3578899999987 4677777663

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.41  E-value=4.2  Score=35.59  Aligned_cols=216  Identities=10%  Similarity=-0.019  Sum_probs=113.9

Q ss_pred             ccceeeeCCCCeEEee-ecCCeEEEEeCCCCcccccccccceEEcccCCCEEEEEEccCCCEEE-EEeCCCcEEEEEccc
Q 009614          238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIE  315 (531)
Q Consensus       238 ~~s~~fspdg~~lasg-s~dg~I~vwd~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~  315 (531)
                      +..++|++..+.+.-. ...+.|+..++.....+       ..+......+.+|++..-+..|. +-...+.|.+.++..
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-------~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-------EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3457888877766554 45677888877644322       11222335688999987555555 445677899998865


Q ss_pred             CccccceecCCCCCeeEEEeecCCcceeeeeccccccccccccccCCCceEEEeCCccccccCcceeE-eecCCCCeeEE
Q 009614          316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDL  394 (531)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~I~~l  394 (531)
                      ......+......+..+.+.+... .++.....            .....+...+..     +..... ....-.....|
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g-~ly~t~~~------------~~~~~I~r~~~d-----G~~~~~i~~~~~~~P~gl  172 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRG-NLYWTDWN------------RDNPKIETSHMD-----GTNRRILAQDNLGLPNGL  172 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTT-EEEEEECC------------SSSCEEEEEETT-----SCCCEEEECTTCSCEEEE
T ss_pred             ceEEEEecccccCCcEEEEecccC-cEEEeecC------------CCCcEEEEecCC-----CCCceeeeeecccccceE
Confidence            443221211112222232222211 11111111            011111111111     111111 12233456789


Q ss_pred             EEcCCC-eE-EEEeCCCcEEEEECCCCeEEEEeecCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEEEec--CCC
Q 009614          395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIR  470 (531)
Q Consensus       395 ~~sp~~-~l-~s~s~Dg~V~lwdl~~~~~l~~~~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~~~~--~~~  470 (531)
                      ++.+.+ .| ++-...+.|...++........+.......+|++.  .+.++.+-...+.|...|..+++.....  ...
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~  250 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC
Confidence            998766 45 45456788999999766554444433345678875  4455556557788999999988876432  223


Q ss_pred             CceEEEEEcc
Q 009614          471 EIVSAVCYCP  480 (531)
Q Consensus       471 ~~v~~v~~sp  480 (531)
                      .....|+..+
T Consensus       251 ~~~~gi~v~~  260 (263)
T d1npea_         251 TRLYGITIAL  260 (263)
T ss_dssp             CCCCCEEEEC
T ss_pred             CCcceEEEeC
Confidence            3444555443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.86  E-value=0.75  Score=46.12  Aligned_cols=61  Identities=20%  Similarity=0.100  Sum_probs=43.0

Q ss_pred             CeEEEEeCCCCeEEEecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeeee
Q 009614          451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC  511 (531)
Q Consensus       451 g~I~Iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~~~~~  511 (531)
                      |.|.-+|+.+++++-......++..-..+-.|.++++|+.||.++-||..+|+++.+++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            5677788888877632222222222223346778888999999999999999999888753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.67  E-value=6.9  Score=37.23  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=28.7

Q ss_pred             EcccCCCEEEEEEccCCCEEEEEeCCCcEEEEEcccCc
Q 009614          280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE  317 (531)
Q Consensus       280 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~  317 (531)
                      +...-..-++|+|.|||++|++--..|.|++++..++.
T Consensus        22 ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          22 ILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             EECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            33334567899999999988876557999988876654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.65  E-value=8.3  Score=36.15  Aligned_cols=95  Identities=8%  Similarity=-0.036  Sum_probs=53.5

Q ss_pred             CcEEEEECCCCeE---EEEee-cCCceEEEEEeeCCCCEEEEE-eCCC--eEEEEeCCCCeEEEec-CCCCceEEEEEcc
Q 009614          409 KTVRLWQVGIDRC---LRVFS-HNNYVTSVAFNPVDDNYFISG-SIDG--KVRIWEVRRCQVVDYT-DIREIVSAVCYCP  480 (531)
Q Consensus       409 g~V~lwdl~~~~~---l~~~~-h~~~V~sv~fsp~d~~~l~sg-s~Dg--~I~Iwd~~~~~~~~~~-~~~~~v~~v~~sp  480 (531)
                      +.|...++.....   ...+. +...+..-.+.. .+++|+.. -.++  .|+++++.++...... .....+..+...+
T Consensus       311 ~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~-~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~  389 (430)
T d1qfma1         311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK  389 (430)
T ss_dssp             CEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT
T ss_pred             ceeEEecCCCCccccceEEecccCcceeeeEEEE-ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCC
Confidence            5566666654321   22333 444454444444 45566554 4554  5889999988766532 2334555555556


Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCeE
Q 009614          481 DGKGGIVGTMT----GNCRFYDIKDNQL  504 (531)
Q Consensus       481 dg~~l~sgs~d----g~I~iwd~~~~~l  504 (531)
                      +...+...-.+    .++.-||+.++++
T Consensus       390 ~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         390 KDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            55544433222    5688999998864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.41  E-value=8.7  Score=36.02  Aligned_cols=221  Identities=12%  Similarity=0.088  Sum_probs=96.5

Q ss_pred             cCCCEEEEEEccCCCEEEEE-eCC----CcEEEEEcccCccccceecCCCCCeeEEEeecCCcceeeeeccccccccccc
Q 009614          283 HEGSILTMKFSLDGQYLASG-GED----GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS  357 (531)
Q Consensus       283 H~~~I~~l~fspdg~~Lasg-s~D----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (531)
                      +.-.+..++++||++++|-+ +.+    -+|++.|+.+++.+...- .......+.|..+....+...............
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            33345567889999988754 223    469999999998653221 111112344444433332221111000000000


Q ss_pred             cccCCCceEEEeCCccccccCcceeEeec--CCCCeeEEEEcCCC-eEE-EEe--CCCcEEEE--ECCCCe--------E
Q 009614          358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HSSEVLDLSWSKNG-FLL-SSS--ADKTVRLW--QVGIDR--------C  421 (531)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~I~~l~~sp~~-~l~-s~s--~Dg~V~lw--dl~~~~--------~  421 (531)
                      ........++.+.......  .....+..  ....+..+..++++ +++ ...  .+....+|  |+....        .
T Consensus       202 ~~~~~~~~v~~h~lgt~~~--~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccCCcceEEEEECCCCcc--ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence            0000111222222211111  11222222  23456677788888 433 332  23344444  443211        1


Q ss_pred             EEEeecCCceEEEEEeeCCCCEEEEEe---CCCeEEEEeCCCCeE---EEec-CCCCceEEEEEccCCCEEEEEe-CCC-
Q 009614          422 LRVFSHNNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQV---VDYT-DIREIVSAVCYCPDGKGGIVGT-MTG-  492 (531)
Q Consensus       422 l~~~~h~~~V~sv~fsp~d~~~l~sgs---~Dg~I~Iwd~~~~~~---~~~~-~~~~~v~~v~~spdg~~l~sgs-~dg-  492 (531)
                      ...+...........+. ++.+++...   .++.|...++.....   ..+. .+...+..-.+...+.+|+..- .++ 
T Consensus       280 ~~~~~~~~~~~~~~~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         280 VKLIDNFEGEYDYVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEEECSSSSCEEEEEEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eEeecccccceEEEecC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            22222222222222233 333444333   235676667665321   1223 3334454444444555666554 454 


Q ss_pred             -cEEEEeCCCCeEEEE
Q 009614          493 -NCRFYDIKDNQLYQQ  507 (531)
Q Consensus       493 -~I~iwd~~~~~l~~~  507 (531)
                       .|+++++.+++....
T Consensus       359 ~~l~v~~~~~~~~~~~  374 (430)
T d1qfma1         359 NTLQLHDLATGALLKI  374 (430)
T ss_dssp             EEEEEEETTTCCEEEE
T ss_pred             eEEEEEECCCCcEEEe
Confidence             488999998876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=7.2  Score=33.98  Aligned_cols=118  Identities=5%  Similarity=-0.050  Sum_probs=69.1

Q ss_pred             CCeeEEEEcCC-CeEEEEe--CCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 009614          389 SEVLDLSWSKN-GFLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       389 ~~I~~l~~sp~-~~l~s~s--~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iwd~~~~~~~  464 (531)
                      .....|+++|. |+|+-..  ..+.|.-.++.......... .-...+.|++++..+.+..+-...+.|...++......
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~  199 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence            34567777774 4333322  33456666665554444443 33567899999834445555566789999998765432


Q ss_pred             E---ecCCCCceEEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 009614          465 D---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ  507 (531)
Q Consensus       465 ~---~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~~~~l~~~  507 (531)
                      .   .........++++. ++...++-..++.|+-.+..+++....
T Consensus       200 ~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         200 TILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             EEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            2   22222345667765 333444444678888888887765543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=9.5  Score=33.14  Aligned_cols=115  Identities=8%  Similarity=-0.005  Sum_probs=76.3

Q ss_pred             CCeeEEEEcCCC--eEEEEeCCCcEEEEECCCCeEEEEee-cCCceEEEEEeeCCCCEEEEE-eCCCeEEEEeCCCCeEE
Q 009614          389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQVV  464 (531)
Q Consensus       389 ~~I~~l~~sp~~--~l~s~s~Dg~V~lwdl~~~~~l~~~~-h~~~V~sv~fsp~d~~~l~sg-s~Dg~I~Iwd~~~~~~~  464 (531)
                      ..+..|++.+.+  +.++-...+.|.+.++.......... .......|+++|..+.++.+. +..+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            345567776544  55555677889999998776555444 456789999999444444443 23456777777765554


Q ss_pred             Eec-CCCCceEEEEEccCCCEEEEE-eCCCcEEEEeCCCCe
Q 009614          465 DYT-DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQ  503 (531)
Q Consensus       465 ~~~-~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~~~~  503 (531)
                      .+. ..-...+.+++.+.++.|..+ ...+.|...++....
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            433 333567899999887766655 556788888887543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.02  E-value=18  Score=33.34  Aligned_cols=97  Identities=9%  Similarity=-0.083  Sum_probs=55.5

Q ss_pred             CCeeEEEEcCCCeEEEEeCCCcEEEEECCCCeEEEEe------ecCCceEEEEEeeCCCCEEEEEeCCCeEEEE-eCCCC
Q 009614          389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW-EVRRC  461 (531)
Q Consensus       389 ~~I~~l~~sp~~~l~s~s~Dg~V~lwdl~~~~~l~~~------~h~~~V~sv~fsp~d~~~l~sgs~Dg~I~Iw-d~~~~  461 (531)
                      .++..+.++|. .++....++.+.++++..++.....      .-.+.+.+++|++ .+..++++..+ ...+- ++...
T Consensus       126 ~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~-~~q~k~~i~~~  202 (381)
T d1xipa_         126 KPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNG-EMEKQFEFSLP  202 (381)
T ss_dssp             SCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETT-EEEEEEEECCC
T ss_pred             ccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCC-ceeeccCCCCc
Confidence            34667777776 4555666888999999887643322      2346678888887 67667666432 22211 11111


Q ss_pred             eEE-EecCCCCceEEEEEccCCCEEEEE
Q 009614          462 QVV-DYTDIREIVSAVCYCPDGKGGIVG  488 (531)
Q Consensus       462 ~~~-~~~~~~~~v~~v~~spdg~~l~sg  488 (531)
                      ..+ ........|.+|.|-.+..++++-
T Consensus       203 ~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         203 SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            100 011234467888888776666554