Citrus Sinensis ID: 009616

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
Protein Sequence
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFPVLNE
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEEEccEEEcccccccccccccEEEEEEEEEEHHHHHHHHHccccccEEEEEEEccccEEEEEccccccEEEEEEEEEccEEEEEEcccEEEEEEEEcccccEEEcccccccEEEEEcccccccccccHHccccccccEEEEEEEccEEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccccEEEccccccEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEcccEEEEEEEEEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEcccEEEEEEEccccccEEEccccHHcEEEEEEccccccHHHHHHHcccccccEEEEEccccccccccccccEEEEEEccHHHHHHHHHccccccEEEEEccccccccccccccHHHHHHccccccHHHHHHHHHHHHHccccEEEEEEEEccEEEEEccccccccccccccccEEEEEEcccccEEEEccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccccHcccccccccHEHccccccccccHHHHHcccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mdetvdadhisdlpTFIIHHIMsflspkdvvrTGILSTTWRkfqtsfpvldfdqnnflvksrVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCelgfpmqklRISVSLlevkesspLFDKWVELAMENGVKELDFEVitdknsvnalpQTIFSAKLLTSLKlfgckleqpshcanlqslkklsldevyVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSfsrvprlldvaecpHLRKLVLflphfndqefhpliskfplledlsiiSLETLERIMISSNRLMHLEVYNcsglnrinvdapnlvsfdfednpipivstnapcplnvlfsnfgdidthWYLNLMEFIGAFNQIGELHLSLNYKQVLFnidefrschpslplqVESLSLFMESFSLYMDVVPSEYEILLDDLFwifypknlclspenwryrpFVMWFYDHLQNistnccngcqikcwrhylkgintesfdplqessegdlwlrldwcfpvlne
Flexible Loop (DISEMBL)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKfqtsfpvldfdqnnflvksRVKRVlpfnledmmsrKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDplqessegdlwlrlDWCFPVLNE
Low Complexity Region (SEG)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVeslslfmesfslYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFPVLNE
Disordered region (IsUnstruct)
********HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFPVL**
Disordered Region (DISOPRED)
****VDA*HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFP****
Disordered Region (DISEMBL)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFPVLNE
Disordered Region (DISPRO)
******ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFL**********FNL******KNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFPVLNE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEGDLWLRLDWCFPVLNE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	531	2.2.26 [Sep-21-2011]
Q9FZ70	416	F-box/FBD/LRR-repeat prot	yes	no	0.342	0.437	0.306	7e-15
Q9FLA2	438	Putative F-box/FBD/LRR-re	no	no	0.435	0.527	0.271	3e-13
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.361	0.355	0.276	1e-12
Q9FNI8	466	FBD-associated F-box prot	no	no	0.391	0.446	0.276	2e-12
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.421	0.530	0.285	4e-11
Q9M190	532	Putative F-box/LRR-repeat	no	no	0.352	0.351	0.296	1e-10
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.429	0.5	0.243	1e-10
Q9FLA1	436	Putative F-box/FBD/LRR-re	no	no	0.435	0.529	0.276	1e-10
Q9LJF8	306	F-box/LRR-repeat protein	no	no	0.387	0.673	0.292	2e-10
P0C2G6	507	Putative F-box/LRR-repeat	no	no	0.354	0.370	0.275	3e-10

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 30/212 (14%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D ISDLP  II +I++ LS +D +RT +LS+ WR   ++   L FD+         K V 
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDE---------KCVS 56

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDAS--LHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
           P N        + C      +RF+     LH+      P+ K ++S S    K+  P  D
Sbjct: 57  PSN--------DRCVVETNLVRFITGVLLLHQ-----GPIHKFQLSTSF---KQCRPDID 100

Query: 126 KWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSL 185
           +W+     NG+KEL  ++   +  V   P  +F+   LT L+L  C+ + P +      L
Sbjct: 101 QWLLFLSRNGIKELVLKLGEGEFRV---PACLFNCLKLTCLELCHCEFDPPQYFKGFSYL 157

Query: 186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFY 217
           K L+L ++ V  ++++SL+  C +LE LS  Y
Sbjct: 158 KSLNLHQILVAPEVIESLISGCPLLEFLSLSY 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 38/269 (14%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D IS+LP  +++HI+ +L  ++ +RT +LS+ WRK     P LD                
Sbjct: 4   DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLD---------------- 47

Query: 68  PFNLEDMMSRKNFCKSLR-KFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
             N+ D  +  N  +SL  KF+      L  F        KL    +L  + +    F  
Sbjct: 48  -VNVHDFPADGNLFESLMDKFLEVNRGRLQNF--------KLNYESNLYYLMDR---FVP 95

Query: 127 WVELAMENGVKELDFEVITD--KNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
           W+   ++ G++ LD    TD    +++ +P  I  +K L SLKL    L+ P    +L  
Sbjct: 96  WIATVVDRGIQHLDVTA-TDCPPWTIDFMPANICKSKTLVSLKLVNVGLDTPKFVVSLPC 154

Query: 185 LKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQ 242
           LK + L++++ +  + ++L+  C VLEDL+        L  LR+  +  LK+  L F + 
Sbjct: 155 LKIMHLEDIFYSPLIAENLISGCPVLEDLTIVRNHEDFLNFLRVM-SQTLKNFRLTFDWG 213

Query: 243 ELE---SVEIAVPSLQQLELSFSRVPRLL 268
                 SVEI  P L+ +    S+  R++
Sbjct: 214 MGSNDFSVEIDAPGLKYMSFRDSQSDRIV 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 25/217 (11%)

Query: 5   VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVK 64
           V  D IS LP  +I HI+SFL  K+   T +L+  W+      P L+FD + +       
Sbjct: 11  VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIY------- 63

Query: 65  RVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF 124
                       R  + KS   F+ FVD+ L    +   P++  R  V   +V + S + 
Sbjct: 64  ------FHPRARRNKYSKSYESFMSFVDSVLALQAKTKTPLK--RFHVKCEDVVDQSWVL 115

Query: 125 DKWVELAMENGVKELDFEVITDKN-----SVNALPQTIFSAKLLTSLKLF---GCKLEQP 176
           + W+   ++ GV ++D  + + +N     S  +LP  IF +K L  LK+    G  ++  
Sbjct: 116 E-WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE 174

Query: 177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213
               +L  LK L LD   +   M+  L+  C  LE+L
Sbjct: 175 GG-VSLPKLKTLHLDYFKIETSMLNKLLSGCHALEEL 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 31/239 (12%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D IS LP  +I  I+ +L  KD+VRT  LS+ W+      P LD D              
Sbjct: 28  DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDS------------- 74

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKW 127
               E+      F   + KFI F  +   + C     + KL++S    +     P   +W
Sbjct: 75  ----EEFQDYNAFVGFMNKFIDF--SGEEKIC-----LDKLKLSSR--KTVNDLPCVTRW 121

Query: 128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKK 187
           ++  +   +K LD E + ++  +  +P +++    L +L+L    L +     +L  LK 
Sbjct: 122 IDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPCLKT 180

Query: 188 LSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCF--GLKRLRISEAHKLKSLILRFTYQE 243
           + L+E VY ND +++SL+  C VL+DL     F   +K LR+  +  L SL + F + E
Sbjct: 181 MRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRV-HSLTLTSLNIDFNFGE 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 35/259 (13%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D +S LP   +  I+S+L  KDV+ T +LS  WR   T  P L++D              
Sbjct: 6   DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYD-------------- 51

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKW 127
              L D     N C    +F +FVD SL         ++ L I +  +       +   W
Sbjct: 52  -LRLHD-----NTCP---RFSQFVDRSL--LLHKAPTLESLNIKIGSICFTAEKDV-GVW 99

Query: 128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKK 187
           V + ++  V+EL     + +  +  LP+ +F+   L  LKL    LE  S     QSLK 
Sbjct: 100 VRIGVDRFVRELSVSYCSGEEPIR-LPKCLFTCSTLAVLKLENITLEDASCYVCFQSLKT 158

Query: 188 LSLDEV-YVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQEL 244
           L L +V Y++DQ +  ++  C  LEDL    C G  +K + ++ A  LK+L L  + Q  
Sbjct: 159 LHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVT-APSLKTLSLHKSSQAF 217

Query: 245 ESVE----IAVPSLQQLEL 259
           E  +    I  P L+++++
Sbjct: 218 EGDDDGFLIDTPKLKRVDI 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M190|FBL49_ARATH Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana GN=At3g42770 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 19/206 (9%)

Query: 13  LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLE 72
           LP  ++  I+SFL  K+   T +LS  WR   T  P LDFD N+ L++S+ ++   +N+ 
Sbjct: 4   LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFD-NSLLLQSKKRK---WNMR 59

Query: 73  DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAM 132
           ++          + F+ FVD++L      G     L+   +L +V     + ++W+  A+
Sbjct: 60  NIQ---------KSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDV-NRWICNAL 109

Query: 133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLF--GCKLEQPSHCANLQSLKKLSL 190
           E+GV EL   +  D      LP  IF++  L  L L    C    P +C +L SLK L L
Sbjct: 110 EHGVSELHLRI--DYTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVP-NCISLPSLKVLFL 166

Query: 191 DEVYVNDQMVQSLVRECRVLEDLSFF 216
           D ++         +  C  LEDL+ +
Sbjct: 167 DSIWFEVPQFLIFLTACPALEDLTIY 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 43/271 (15%)

Query: 7   ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRV 66
           AD I+ +P  I+HHI+SF+     +RT +LS  WR      P LD               
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDI-------------- 71

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
                   +      ++L  +   +  S     +L                  + P  D 
Sbjct: 72  -------TLKHGAMNQTLTSYTAPIITSFKLVMDLN---------------SNTVPQVDS 109

Query: 127 WVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLE----QPSHCANL 182
           W+E A+   V+ L   V     S       IF   L +SLKL    L+     P+   + 
Sbjct: 110 WIEFALSRNVQNLSVFVRDFTYSKTYRFPDIF--YLSSSLKLLDVTLDFFDMIPTCTVSW 167

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
           +SL+ L+L    + D+ + +++  C +LE L+   C  L+RL +S++  L+ L +   Y+
Sbjct: 168 KSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDINQQYR 227

Query: 243 ELESVEIAVPSLQQLELSFSRVPR-LLDVAE 272
               V I  P +  L L++S  P  ++DV+ 
Sbjct: 228 RTGPVAIVAPHIYYLRLTYSSTPSTIVDVSS 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA1|FDL35_ARATH Putative F-box/FBD/LRR-repeat protein At5g44960 OS=Arabidopsis thaliana GN=At5g44960 PE=4 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 44/275 (16%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKR 65
           + D+I++LP  ++  I+  L  KD V+T + S  WR    + P LD     F        
Sbjct: 3   ECDYINELPDSLLTQILLDLRTKDSVKTSVSSKRWRNLWLNVPGLDLFSLQF-------- 54

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
             P + E +             I+F+D  +   C       + R+   ++   E +   D
Sbjct: 55  TNPHHEEGL-------------IKFMDRFMESNC-------RSRLQKFMIRYFECNGYRD 94

Query: 126 KWVEL---AMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
           +++EL    ++ G++ L +  +   N V+ + Q I+ +K L SLKL+  +L+ P    +L
Sbjct: 95  RFMELIGTVVDCGIQHL-YVYMHTCNRVDFIRQNIYKSKTLVSLKLYNVELKNPDFVVSL 153

Query: 183 QSLKKLSLDEV-YVNDQ--MVQSLVRECRVLEDLSFFYCFGLKR------LRISEAHKLK 233
             LK L L ++ Y  D   +V+ L+  C VLEDL     F +        LR+S +  LK
Sbjct: 154 PCLKILKLMKICYGEDGPLVVEKLISGCPVLEDLELIKPFDILTQDVILFLRVS-SQTLK 212

Query: 234 SLILRFTYQELESVEIAVPSLQQLELSFSRVPRLL 268
           SL L F      SVEI  P L+ +    SR  R++
Sbjct: 213 SLRLYFATN--GSVEIDAPRLKYMTFYESRFDRIM 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF8|FBL47_ARATH F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana GN=At3g26922 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 104/256 (40%), Gaps = 50/256 (19%)

Query: 5   VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVK 64
           V+ D ISDLP  ++  I+S L  KDVV T +LS  WR      P L FD  N        
Sbjct: 11  VNEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYEN-------- 62

Query: 65  RVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF 124
                  ED    +  C+ L         SLH    LGF   + R           S   
Sbjct: 63  ----NQSEDETYSEIVCRLLLSNKAPFLESLH----LGFRFGECR-----------SVEV 103

Query: 125 DKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
             W+ +A    V++L   V + K S    P  +++ + L SL L    L      A L+S
Sbjct: 104 GMWIGIAYARHVRDLVLHVESVKGSF-IFPTGLYNCETLESLTLRSWVLVDVPSPACLKS 162

Query: 185 LKKLSLDEV-YVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQE 243
           L+ L L+ V Y  D  V +L+  C  LE+L                     ++ R    E
Sbjct: 163 LRTLRLENVDYKYDDSVYNLLSGCPNLENL---------------------VVYRGNLLE 201

Query: 244 LESVEIAVPSLQQLEL 259
           +E+  IAVPSLQ+L +
Sbjct: 202 VETFTIAVPSLQRLTI 217

Arabidopsis thaliana (taxid: 3702)

>sp|P0C2G6|FBL71_ARATH Putative F-box/LRR-repeat protein At4g00320 OS=Arabidopsis thaliana GN=At4g00320 PE=4 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 26/214 (12%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           D IS LP  +I HI+SFL  K    T +L+  W+      P LDFD++            
Sbjct: 13  DGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDES------------ 60

Query: 68  PFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKW 127
            F  +  M+ +   K    F+  VD+ L    E    + K  +      V+++S L  +W
Sbjct: 61  -FRFDPRMTCEERRKGSESFMLVVDSVLALQAEANATLNKFYVKCE--GVEQNSVL--EW 115

Query: 128 VELAMENGVKELDFEVITDKN-----SVNALPQTIFSAKLLTSLKLF---GCKLEQPSHC 179
           +   ++ GV ++D ++ + +      +   LP  IF +K L  LK+    G  +      
Sbjct: 116 IPKVLKRGVLDIDLQIPSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVNVEGD- 174

Query: 180 ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213
            +L  LK L LD V ++ +M+Q L+  C  LE+L
Sbjct: 175 VSLPMLKTLHLDYVKMDTRMLQKLLSGCHTLEEL 208

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
224121624	528	predicted protein [Populus trichocarpa]	0.915	0.920	0.342	1e-70
224119688	563	f-box family protein [Populus trichocarp	0.922	0.870	0.317	7e-44
147833276	521	hypothetical protein VITISV_011919 [Viti	0.879	0.896	0.312	3e-43
225442254	520	PREDICTED: putative F-box protein At3g44	0.875	0.894	0.301	2e-40
297743071	552	unnamed protein product [Vitis vinifera]	0.875	0.842	0.301	2e-40
356557323	833	PREDICTED: uncharacterized protein LOC10	0.890	0.567	0.283	2e-36
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.741	0.840	0.290	2e-34
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.741	0.840	0.288	7e-34
357454743	761	Agglutinin alpha chain [Medicago truncat	0.928	0.647	0.261	1e-32
449458245	575	PREDICTED: uncharacterized protein LOC10	0.856	0.791	0.289	9e-31

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 286/523 (54%), Gaps = 37/523 (7%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVL 67
           DHIS  P  ++HHI+SFL  KDV+RT ILS  W+    ++P+LDF   +   +S      
Sbjct: 2   DHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQS------ 55

Query: 68  PFNLEDMMSRKN----FCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                D M  +N    + + L KF+ +VD S+ RFC+  F MQK ++ + L +++ SS L
Sbjct: 56  ----SDAMYSENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL 111

Query: 124 FDKWVELAMENGVKELDFEVITDK----NSVNALPQTIFSAKLLTSLKLFGCKLE-QPSH 178
            DKWV+  +ENG KE+DF +            ++P  IF+AK +T LKLFGC ++ + S 
Sbjct: 112 -DKWVQKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESF 170

Query: 179 CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR 238
           C  L SL+KL+L EV ++D +++ +V  C +LED+S  +C+GLK++++ E  +LK   + 
Sbjct: 171 CIKLHSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIY 230

Query: 239 FTYQELESVEIAVPSLQQLELSFS--RVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLIS 296
               + ESVEI  PSL+    SF+   V  ++ V  C  L+ L+L      +     L+ 
Sbjct: 231 SHLSKPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVP 290

Query: 297 KFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIV 356
           KF +LE L +     L+++ ISS RL  LE+++C  +  I ++ PNL+S  +  + +P+ 
Sbjct: 291 KFHVLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVS 350

Query: 357 STNAP-CPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH 415
             NAP C   V FS    +D  WY+ L EF+   NQ+  LH+ +    ++ +++     +
Sbjct: 351 LINAPSCHWQVEFSLMNTLDILWYMTLKEFLAKLNQLVYLHVYVYLTTIMSSLNLEDLSN 410

Query: 416 PSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCL--SPENWRYRPFVM 473
            + P  V+++ L + S S  M      Y   +D LF+   PKNL +  + E  RY  ++ 
Sbjct: 411 NASPYVVDNVVLTVHSASPIM-----TYANFMDGLFFFSRPKNLFIRSTDEQKRYVEYLC 465

Query: 474 WFYDHLQNISTNCCNGCQIKCWRHYLKGINTESFDPLQESSEG 516
            F       + +CCN  ++KCWRH LK +   SF    ES++G
Sbjct: 466 GF----SKRALSCCNHRKVKCWRHDLKEVKLGSF---VESADG 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 265/536 (49%), Gaps = 46/536 (8%)

Query: 1   MDETVDA-DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLV 59
           M   VDA D IS LP  ++H+I+S+LS + VVR  +LS TW +  TSFPV DF ++  L+
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 60  KSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVK- 118
             R      + ++D    KN      KFI FV  SL           K R+S+ L     
Sbjct: 87  GKR------YEIQDW---KN------KFIDFVQDSLLAQHHHNTRSHKFRLSMDLDSYDP 131

Query: 119 ESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFG-CKLEQPS 177
           + +   D  +ELA + GV E D        S   LP+ + SA+ +T L+L G  KL  P 
Sbjct: 132 QLTSRADHLLELATKCGVYEFDLNF--QNISHYCLPRALLSAEEITVLRLNGNYKLSLPR 189

Query: 178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237
              N  SL+ LSL  V V++ ++Q+L+  C ++E L+  YC+G+K +RIS   KLK + +
Sbjct: 190 DAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEV 249

Query: 238 RFTYQELESVEIAVPSLQQLELSFSRVPRL--LDVAECPHLRKLVLFLPHFND---QEFH 292
                 LE +EI VPSL+    +   V     +D+  C +L  L L   +  +   Q F 
Sbjct: 250 NEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQ 309

Query: 293 PLISKFPLLEDLSIISLET-LERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDN 351
            LI++FP L+ L++    T + RI IS+ +L  L++++ S L ++ + +P+L SF     
Sbjct: 310 DLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWS-SALTKVTITSPSLHSFKHFTY 368

Query: 352 PIPIVSTNAPCPLN--VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNID 409
             P   +     L    L  + G + +  +L L E++G FNQI  L L +NY  + F  +
Sbjct: 369 GFPSAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYVGIRFIPE 428

Query: 410 EFRSCH-PSLPLQVESLSLFMESFSLYMDVVPS--EYEILLDDLFWIFYPKNLCL----S 462
              +   P+LP  ++ L L +   +     + +  +Y  ++D L W+ +P+ + L    S
Sbjct: 429 TLNNISIPALP-DIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVCHPETILLISGWS 487

Query: 463 PENWRYRPFVMWFYDHLQNIS--TNCCNGCQIKCWRHYLKGINTESFDPLQESSEG 516
            EN     F+    + L       +CC    IKCWRH LK I  E    LQ ++E 
Sbjct: 488 SENL----FIQILCEKLMQGGEKQHCCTSSHIKCWRHDLKDIQIEH---LQRNAEA 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 161/516 (31%), Positives = 240/516 (46%), Gaps = 49/516 (9%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLD--FDQNNFLVKSRV 63
           + D IS LP  I+  I+  L  KDV R+ +LS  WRK      +    F   +FL   R 
Sbjct: 4   EQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFSSLSLLMFQCPDFLESCR- 62

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                         KN    +  FI  +D+SL R       + +LR+ + L ++ ES  L
Sbjct: 63  --------------KN--TDVSSFINAIDSSL-RLRPKDVNLARLRLHLDLDDI-ESESL 104

Query: 124 FDKWVELAMENGVKELDFEVITDK-NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
            D W++ A+E  VKELD  +          LP  IFS   +T L L  C+LE      +L
Sbjct: 105 IDSWIDAALERKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEICGD-IDL 163

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L ++  ++Q ++ L+  C ++EDL    C GL++L +S    L  L +   Y 
Sbjct: 164 PALRKLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYN 223

Query: 243 ELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE 302
            L  +EI  PSLQ L     R+P  + +  C  LR+L+L  PH  +     L S FP LE
Sbjct: 224 -LRRIEIDAPSLQHLVYHCGRLPCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLE 282

Query: 303 DLSIISLETLERIMISSNRLMHLE--VYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNA 360
            L I S   L+RI IS ++L  LE  +       ++ +DAPNL SF +    +P+ ST +
Sbjct: 283 RLEIDSTR-LQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTIS 341

Query: 361 PCPLNVL------FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSC 414
               + L      F N+ D    +   L EF         ++L +  K+ L    + R  
Sbjct: 342 SMNTSSLREAEIHFRNYNDYSHFFIPQLKEFFEKSKNCQVINLLIKSKEELIIPRKLR-- 399

Query: 415 HPSLPLQVESLSLFMESFSLYMDV-VPSEYEILLDDLFWIFYPKNLC-LSPENWRYRPFV 472
            P L   V  +        LY+ V   S ++ ++D + W+ +P+ L  LS  N R   F+
Sbjct: 400 -PILSPPVYDIK------HLYLRVSYCSRFQYIIDRMLWMCHPQTLSILSGTNVR---FL 449

Query: 473 MWFYDHLQNISTN--CCNGCQIKCWRHYLKGINTES 506
              Y+  +N   N  CC  C IKCWRHYLK +  +S
Sbjct: 450 KVLYNKFRNKEENPKCCTSCSIKCWRHYLKDVQIDS 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 240/517 (46%), Gaps = 52/517 (10%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ--TSFPVLDFDQNNFLVKSRV 63
           + D IS LP  I+  I+S L  K++ RT +LS  WRK    +S  VL F   +F   SR 
Sbjct: 4   EQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFF-HSR- 61

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                        RKNF   +  FI  +D+SL R  +    + +L++ + L ++ ES  L
Sbjct: 62  -------------RKNF--DVSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDI-ESESL 104

Query: 124 FDKWVELAMENGVKELDFEVITDK-NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
            D W++ A+E  VKELD  ++         LP  IFS   +T L L  C+LE      +L
Sbjct: 105 IDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGD-VDL 163

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L ++  ++Q ++ L+  C ++EDL    C  LK+L +S    L  L++   Y 
Sbjct: 164 PALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYN 223

Query: 243 ELESVEIAVPSLQQLELSFSRVPRLLDVAECPH--LRKLVLFLPHFNDQEFHPLISKFPL 300
            L  +EI  PSLQ       R   L DV   P   LR+L+L   H  +     L+S  P 
Sbjct: 224 -LRRIEIDAPSLQYFMYDHQR-SLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPN 281

Query: 301 LEDLSIISLETLERIMISSNRLMHLEVY--NCSGLNRINVDAPNLVSFDFEDNPIPIVS- 357
           LE L I S   L+RI IS ++L  LE+         ++ +DAPNL SF +    +P+ S 
Sbjct: 282 LERLEIDSTR-LQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSM 340

Query: 358 -----TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFR 412
                T++     + F N  D    + L L EF         ++L +  K+ L    + R
Sbjct: 341 ISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLR 400

Query: 413 SCHPSLPL-QVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPF 471
              PS P+  ++ L L +           S ++ ++D + W+ +P+ L +         F
Sbjct: 401 PI-PSPPVYDIKHLHLIV--------YYCSRFQYIIDRMLWMCHPQTLSIETSA----KF 447

Query: 472 VMWFYDHLQNISTN--CCNGCQIKCWRHYLKGINTES 506
           +   Y+   N   N  CC  C  KCWRHYL+ +  + 
Sbjct: 448 LKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQIDG 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 240/517 (46%), Gaps = 52/517 (10%)

Query: 6   DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ--TSFPVLDFDQNNFLVKSRV 63
           + D IS LP  I+  I+S L  K++ RT +LS  WRK    +S  VL F   +F   SR 
Sbjct: 36  EQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFF-HSR- 93

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
                        RKNF   +  FI  +D+SL R  +    + +L++ + L ++ ES  L
Sbjct: 94  -------------RKNF--DVSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDI-ESESL 136

Query: 124 FDKWVELAMENGVKELDFEVITDK-NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL 182
            D W++ A+E  VKELD  ++         LP  IFS   +T L L  C+LE      +L
Sbjct: 137 IDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGD-VDL 195

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L ++  ++Q ++ L+  C ++EDL    C  LK+L +S    L  L++   Y 
Sbjct: 196 PALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYN 255

Query: 243 ELESVEIAVPSLQQLELSFSRVPRLLDVAECPH--LRKLVLFLPHFNDQEFHPLISKFPL 300
            L  +EI  PSLQ       R   L DV   P   LR+L+L   H  +     L+S  P 
Sbjct: 256 -LRRIEIDAPSLQYFMYDHQR-SLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPN 313

Query: 301 LEDLSIISLETLERIMISSNRLMHLEVY--NCSGLNRINVDAPNLVSFDFEDNPIPIVS- 357
           LE L I S   L+RI IS ++L  LE+         ++ +DAPNL SF +    +P+ S 
Sbjct: 314 LERLEIDSTR-LQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSM 372

Query: 358 -----TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFR 412
                T++     + F N  D    + L L EF         ++L +  K+ L    + R
Sbjct: 373 ISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLR 432

Query: 413 SCHPSLPL-QVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPF 471
              PS P+  ++ L L +           S ++ ++D + W+ +P+ L +         F
Sbjct: 433 PI-PSPPVYDIKHLHLIV--------YYCSRFQYIIDRMLWMCHPQTLSIETSA----KF 479

Query: 472 VMWFYDHLQNISTN--CCNGCQIKCWRHYLKGINTES 506
           +   Y+   N   N  CC  C  KCWRHYL+ +  + 
Sbjct: 480 LKVLYNKFSNKEENPKCCTSCPTKCWRHYLEDVQIDG 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 243/536 (45%), Gaps = 63/536 (11%)

Query: 1   MDETVDA--DHISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPVLDFDQNNF 57
           MD + D   D IS  P  +IHHI+S L +  D +RT +LS  WR+   S+ VL FD+  F
Sbjct: 151 MDTSDDGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKF 210

Query: 58  LVKSRVKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEV 117
             K           ED  ++         F  +V  SL         ++KL + ++  ++
Sbjct: 211 AAK--------IGHEDSSNKGMM------FRDYVSNSLLTSNAKNLQIRKLVLHMTSFDL 256

Query: 118 KESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPS 177
            E +P  + W+ +A+   +KELD  V         LPQT+FS+K LT ++L GCKL    
Sbjct: 257 LEDAPCLELWLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKL---G 313

Query: 178 HCANLQ--SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL 235
            C N++   L+KL L ++ + +  +Q+L+  C  +EDL    C GLK L +S   +LK  
Sbjct: 314 TCNNIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRA 373

Query: 236 ILRFTYQELESVEIAVPSLQQLELSFSRV-PRLLDVAECPHLRKLVLFLPHFNDQEFHPL 294
            +    Q L+ VEI+ P+L        +  P  + +  C  L++L L  P          
Sbjct: 374 EIHHCIQ-LKKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQ 432

Query: 295 ISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRIN---VDAPNLVSFDFEDN 351
            S FPLLE L +       R +I SN   HLE +   G  ++    V+APNL+SF+ +  
Sbjct: 433 FSNFPLLEKLDLSMSNNKSRFIIISN--PHLEKFTLKGCKKLGIVLVEAPNLLSFECKGE 490

Query: 352 PIPIVSTNAPCPLNVLFSNF---------GDIDTHWYLNLMEFIGAFNQIGELHLSLNYK 402
            +P V  + P  L     +F         G  D  W + +  FI  FN+     +  + K
Sbjct: 491 TMPWVEIH-PFGLTQAKLSFVPKSEPRVVGYGDKIW-IRMKSFIQKFNRERFKLVLYSNK 548

Query: 403 QVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEI--LLDDLFWIFYPKNLC 460
            ++ + D      P +P              L  +++ S   I   L+ L    +P  L 
Sbjct: 549 SIVIHEDLNNVILPPVP-------------DLGCEIINSSACIDDALNSLLRKLHPVTLS 595

Query: 461 -LSPENWRYRPFVMWFYDHLQNISTN--CC--NGCQIKCWRHYLKGINTESFDPLQ 511
            +SP + ++   V   Y+ ++N   +  CC  +  + KCWRH LK +N E  + ++
Sbjct: 596 IISPTDSKFPKLV---YEMMKNKDKDPICCIYSTSKNKCWRHLLKDVNFEDLNDVK 648

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 196/423 (46%), Gaps = 29/423 (6%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRV--KR 65
           D IS+LP  I+ HI+SFLS K +++T ILS  W     +FP  +FD+N F ++S++  KR
Sbjct: 2   DLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNKR 61

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
               N  +   ++  C  LRKF    D          FP     + V            D
Sbjct: 62  FHLINFVEQTLKQLKC--LRKFKLHTD----------FPEPNSMVVV------------D 97

Query: 126 KWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSL 185
           +W++  +E+GV+EL+  V  +      LPQ +F+ + LT L +  CKL        L S+
Sbjct: 98  RWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSM 157

Query: 186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELE 245
           K +SL  V+  D+ V+ LV  C  ++ +    C GL+ L + E ++L ++ ++     L 
Sbjct: 158 KSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQ-NNSGLY 216

Query: 246 SVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305
                  +LQ  E      P  ++++ C +L+ L L +    D  F+   S+FPLLE L+
Sbjct: 217 EFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILA 276

Query: 306 IISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN 365
           +     LE + ISS+ L    +  C  + R+++DAP L   +F  + I   S NAP    
Sbjct: 277 LSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISF-SLNAPALSQ 335

Query: 366 VLFSNFGDI-DTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVES 424
                   I D  W +  +EF+  FN +  L L     + +    E R    S    V+ 
Sbjct: 336 ADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVKH 395

Query: 425 LSL 427
           L L
Sbjct: 396 LKL 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 195/423 (46%), Gaps = 29/423 (6%)

Query: 8   DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRV--KR 65
           D IS+LP  I+ HI+SFLS K +++T ILS  W     +FP  +FD+N F ++S++  KR
Sbjct: 2   DLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNKR 61

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFD 125
               N  +   ++  C  LRKF    D          FP     + V            D
Sbjct: 62  FHLINFVEQTLKQLKC--LRKFKLHTD----------FPEPNSMVVV------------D 97

Query: 126 KWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSL 185
           +W++  +E+GV+EL+  V  +      LPQ +F+ + LT L +  CKL        L S+
Sbjct: 98  RWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSM 157

Query: 186 KKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELE 245
           K +SL  V+  D+ V+ LV  C  ++ +    C GL+ L + E ++L ++ ++     L 
Sbjct: 158 KSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQ-NNSGLY 216

Query: 246 SVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS 305
                  +LQ  E      P  ++++ C +L+ L L +    D  F+   S+FPLLE L+
Sbjct: 217 EFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILA 276

Query: 306 IISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN 365
           +     LE + ISS+ L    +  C  + R+++D P L   +F  + I   S NAP    
Sbjct: 277 LSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISF-SLNAPALSQ 335

Query: 366 VLFSNFGDI-DTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVES 424
                   I D  W +  +EF+  FN +  L L     + +    E R    S    V+ 
Sbjct: 336 ADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVKH 395

Query: 425 LSL 427
           L L
Sbjct: 396 LKL 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 249/547 (45%), Gaps = 54/547 (9%)

Query: 8   DHISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRV 66
           D IS LP  +I+HI+SFL + +D +RT  LS  WR    S+  L F +  F         
Sbjct: 42  DRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAG------ 95

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
                ED  +++N       F + V  SLH +      +QKL + +   ++ ++ PL D 
Sbjct: 96  --IGPEDGSNKENL------FRQHVADSLHTYLANNLQIQKLLLHMMSFDLTDA-PLVDS 146

Query: 127 WVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCAN--LQS 184
           W+  A+   ++E+D ++     +   LP+ + S++ LT L+L GC L +   C N  L  
Sbjct: 147 WLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRR---CGNIMLPR 203

Query: 185 LKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQEL 244
           L+KL L +V++ +Q+V +L+  C  +EDL F  C GLK L I     L  L +    Q L
Sbjct: 204 LQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYI-HCDSLSRLEIHNCNQ-L 261

Query: 245 ESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLED 303
           ++  I  P+L        +  P  +++ +C  L+KL L  P  +        +KFPLLE 
Sbjct: 262 KTAYIFAPNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEK 321

Query: 304 LSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVS------ 357
           L +   + ++ I I +  L  + +  C  L  + + AP LVSF+ +   +P         
Sbjct: 322 LDLCIADKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPYFDFVTPFL 381

Query: 358 -TNAPCPLNVLFS--NFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSC 414
            T+A   L+      + G  +  W++ +  FI  F  +    + ++  + +  I E  S 
Sbjct: 382 LTDAKISLSTATESRDVGLGNQLWFM-MRPFISLFFPVEGFKMIMHSSKHII-IHEDLSS 439

Query: 415 HPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMW 474
               PL   +  +   S  +         E +L  L    +P+++ +   +       ++
Sbjct: 440 IKCPPLHDLTFEIIKSSACV---------EDILYGLLRTLHPESVSIISSSGNKFHESVY 490

Query: 475 FYDHLQNISTNCC--NGCQIKCWRHYLKGINTESFDPL---QESSEGDL-----WLRLDW 524
               +++    CC  N  + KCWRH+LK + +ES+  +    E+SEG +     WL+L +
Sbjct: 491 EMIKIKDDDPVCCIYNISKNKCWRHFLKDVKSESWQEMLDVVEASEGGIGTLYFWLQLSY 550

Query: 525 CFPVLNE 531
               L +
Sbjct: 551 SSTSLRQ 557

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 229/507 (45%), Gaps = 52/507 (10%)

Query: 7   ADHISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKR 65
            D IS LP   IHHI+SFL S K+  RT ILS  WR    SF VL F++ ++L     K 
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYL-----KA 107

Query: 66  VLPFNLEDMMSRKNFCKSLRKFIRFVDASL--HRFCELGFPMQKLRISVSLLEVKESSPL 123
            +  N +         K  +KFI  +D SL  H    LG     LRI+  L+        
Sbjct: 108 EVGLNSD---------KQRQKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVS------H 152

Query: 124 FDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCA-NL 182
             +WV++A ENG+ ELD  V T +     +P  + S K L+ L+L G  L   S  A   
Sbjct: 153 LKRWVDMAGENGLGELDIHVETTRKRCK-VPLCMHSIKTLSGLRLQG--LYWSSFEALEF 209

Query: 183 QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQ 242
            +L+KL L  ++V+ Q++Q LV  C +L DL    C GL  L+IS + KL+ + L +   
Sbjct: 210 NNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDL-YQCH 268

Query: 243 ELESVEIAVPSLQQLELSFSRVPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL 301
            L  VE+ VPSL+       +     L++  C  L++L L  P   +  F+ L+  FP+L
Sbjct: 269 FLRRVELQVPSLKTFWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVL 328

Query: 302 EDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAP 361
           E L++   + L+ I I++  L  L +  C  L  I+VD+    S D+      +V     
Sbjct: 329 EKLNLSRCDKLQIIGIANVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGR--EMVHAFGC 386

Query: 362 CPL---NVLFSNFGDIDTHWYLNLMEFIGAF--NQIGELHLSLNYKQVLFNIDEFRSCH- 415
            PL    +   +    D   +     FI +F         + + + + +   DE +    
Sbjct: 387 LPLKEAKISLVSKKKEDPSAFPTRNVFIRSFLGRHCKGFKIIVWFCKNVIIHDEIKDIFL 446

Query: 416 PSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENWRYRPFVMWF 475
           PSLP           +   +     +  + LL+DL    +P+ + ++       P  +  
Sbjct: 447 PSLP-----------NLKFHAIKPSTNAKDLLEDLLTKEHPERIIVASSFSSEVPHAL-- 493

Query: 476 YDHLQNISTNCCN--GCQIKCWRHYLK 500
           +     + T+CC+      KCWRH+LK
Sbjct: 494 HKIKGEVETSCCSYINSNRKCWRHFLK 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
TAIR|locus:2162484	466	AT5G22730 "AT5G22730" [Arabido	0.312	0.356	0.272	4.6e-16
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.288	0.367	0.292	2.2e-13
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.489	0.616	0.253	1.5e-12
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.337	0.404	0.273	1.5e-12
TAIR|locus:2037558	452	AT1G78760 "AT1G78760" [Arabido	0.499	0.586	0.249	1.7e-12
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.361	0.355	0.276	4.3e-12
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.278	0.324	0.283	6.3e-12
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.352	0.351	0.310	7e-12
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.244	0.503	0.274	9.5e-12
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.548	0.635	0.248	1.5e-11

TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
 Identities = 49/180 (27%), Positives = 86/180 (47%)

Query:    67 LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDK 126
             L  + E+      F   + KFI F  +   + C     + KL++S S   V +  P   +
Sbjct:    70 LDLDSEEFQDYNAFVGFMNKFIDF--SGEEKIC-----LDKLKLS-SRKTVNDL-PCVTR 120

Query:   127 WVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLK 186
             W++  +   +K LD E + ++  +  +P +++    L +L+L    L +     +L  LK
Sbjct:   121 WIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPCLK 179

Query:   187 KLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCF--GLKRLRISEAHKLKSLILRFTYQE 243
              + L+E VY ND +++SL+  C VL+DL     F   +K LR+     L SL + F + E
Sbjct:   180 TMRLEENVYANDVVLESLISSCPVLKDLIILRMFEDNVKVLRVHSL-TLTSLNIDFNFGE 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 48/164 (29%), Positives = 79/164 (48%)

Query:    81 CKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELD 140
             C      +RF+   L      G P+ K ++S S    K+  P  D+W+     NG+KEL 
Sbjct:    62 CVVETNLVRFITGVL--LLHQG-PIHKFQLSTSF---KQCRPDIDQWLLFLSRNGIKELV 115

Query:   141 FEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMV 200
              ++   +  V   P  +F+   LT L+L  C+ + P +      LK L+L ++ V  +++
Sbjct:   116 LKLGEGEFRV---PACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVI 172

Query:   201 QSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQEL 244
             +SL+  C +LE LS  Y F    L IS A  L  L L   ++++
Sbjct:   173 ESLISGCPLLEFLSLSY-FDSLVLSIS-APNLMYLYLDGEFKDI 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 72/284 (25%), Positives = 126/284 (44%)

Query:    73 DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISV-SLLEVKESSPLFDKWVELA 131
             D+    N C    +F +FVD SL         ++ L I + S+    E       WV + 
Sbjct:    51 DLRLHDNTCP---RFSQFVDRSL--LLHKAPTLESLNIKIGSICFTAEKD--VGVWVRIG 103

Query:   132 MENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLD 191
             ++  V+EL     + +  +  LP+ +F+   L  LKL    LE  S     QSLK L L 
Sbjct:   104 VDRFVRELSVSYCSGEEPIR-LPKCLFTCSTLAVLKLENITLEDASCYVCFQSLKTLHLL 162

Query:   192 EV-YVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQELESVE 248
             +V Y++DQ +  ++  C  LEDL    C G  +K + ++ A  LK+L L  + Q  E  +
Sbjct:   163 DVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVT-APSLKTLSLHKSSQAFEGDD 221

Query:   249 ----IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL 304
                 I  P L+++++          +   P + +  + + + N ++    I+    L  L
Sbjct:   222 DGFLIDTPKLKRVDIE-DYWGGFCYIENMPEVVEANVDVIYKNTEKLLGSITSVKRLA-L 279

Query:   305 SIISLETLERIMISSNRLMHLEVYNCSG-----LNRINVDAPNL 343
              +I+ +         ++L+HLE+  C+      L R+  D+P L
Sbjct:   280 CLITSDAAYPAGTIFSQLVHLELCTCAPRWWDLLTRLIEDSPKL 323

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
 Identities = 56/205 (27%), Positives = 96/205 (46%)

Query:    66 VLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF- 124
             +L FN+ +      F + +  F+   D S    C     + KL+++    E K+    + 
Sbjct:    52 LLEFNVSEFHGYYEFARVVHGFL---DTS-RETC-----IHKLKLA---FEKKQHDRSYL 99

Query:   125 DKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQS 184
              +W+  A++  V+ LD    +       +P ++++ + L SL+L    L    H  +L  
Sbjct:   100 TQWIHNAVKRKVQHLDIGRWSYLGQ-ELIPHSLYTCETLVSLRLHNVSLPDFDH-VSLPR 157

Query:   185 LKKLSL-DEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFT- 240
             LK + L D +Y ND ++++L+  C VLEDL+        +K LR+     LKSLIL    
Sbjct:   158 LKTMHLIDNIYPNDALLENLISSCPVLEDLNVSRDVENIVKVLRVRSL-SLKSLILALDG 216

Query:   241 --YQELE--SVEIAV--PSLQQLEL 259
               Y ++E  S E+ +  P L  L L
Sbjct:   217 DRYGDIEDDSWEVVIDAPRLSYLSL 241

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037558 AT1G78760 "AT1G78760" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 73/293 (24%), Positives = 132/293 (45%)

Query:    87 FIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITD 146
             F+ FVD  L    E  F  Q  R+     E + +     +W+ + ++  +K LD    T 
Sbjct:    71 FVSFVDRFLALDRESCF--QSFRLRYDCDEEERTISNVKRWINIVVDQKLKVLDVLDYTW 128

Query:   147 KNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEV-YVNDQMVQSLVR 205
              N    +P ++++ + L SLKL    L  P    +L  +K + LD V + N  +++ ++ 
Sbjct:   129 GNEEVQIPPSVYTCESLVSLKLCNVILPNPK-VISLPLVKVIELDIVKFSNALVLEKIIS 187

Query:   206 ECRVLEDL--SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAV--PSLQQLELSF 261
              C  LE L  S      +  LR+S    L    +       + +E+A+  P L+ L +S 
Sbjct:   188 SCSALESLIISRSSVDDINVLRVSSRSLLSFKHIGNCSDGWDELEVAIDAPKLEYLNISD 247

Query:   262 SRVPR--LLDVAECPHLRKLVLF----LPHFNDQEFHPLISKFPLLEDLSIISLETLERI 315
                 +  + +       +  ++F    LPH ND+    +I  F  L ++S     +++++
Sbjct:   248 HSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDF--LAEIS-----SVKKL 300

Query:   316 MISSNRLMHLEVYNCS-GLNRINVDAPNLVSFDFEDNPIPIVSTNAP-CPLNV 366
              ISS+ L  +    C   L R N+ + ++   DFED+ + ++ST    CP NV
Sbjct:   301 FISSHTLEVIHDLGCELPLFR-NLSSLHI---DFEDHTLKMLSTFLQSCP-NV 348

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 60/217 (27%), Positives = 100/217 (46%)

Query:     5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVK 64
             V  D IS LP  +I HI+SFL  K+   T +L+  W+      P L+FD + +    R +
Sbjct:    11 VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYF-HPRAR 69

Query:    65 RVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLF 124
             R              + KS   F+ FVD+ L    +   P+++  +     +V + S + 
Sbjct:    70 R------------NKYSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVL 115

Query:   125 DKWVELAMENGVKELDFEVITDKN-----SVNALPQTIFSAKLLTSLKL-F--GCKLEQP 176
             + W+   ++ GV ++D  + + +N     S  +LP  IF +K L  LK+ F  G  ++  
Sbjct:   116 E-WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE 174

Query:   177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL 213
                 +L  LK L LD   +   M+  L+  C  LE+L
Sbjct:   175 GG-VSLPKLKTLHLDYFKIETSMLNKLLSGCHALEEL 210

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
 Identities = 44/155 (28%), Positives = 75/155 (48%)

Query:   122 PLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ----PS 177
             P  D W+E A+   V+ L   V     S       IF   L +SLKL    L+     P+
Sbjct:   105 PQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFY--LSSSLKLLDVTLDFFDMIPT 162

Query:   178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL 237
                + +SL+ L+L    + D+ + +++  C +LE L+   C  L+RL +S++  L+ L +
Sbjct:   163 CTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDI 222

Query:   238 RFTYQELESVEIAVPSLQQLELSFSRVPR-LLDVA 271
                Y+    V I  P +  L L++S  P  ++DV+
Sbjct:   223 NQQYRRTGPVAIVAPHIYYLRLTYSSTPSTIVDVS 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 64/206 (31%), Positives = 100/206 (48%)

Query:    13 LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLE 72
             LP  ++  I+SFL  K+   T +LS  WR   T  P LDFD N+ L++S+ ++   +N+ 
Sbjct:     4 LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFD-NSLLLQSKKRK---WNM- 58

Query:    73 DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAM 132
                  +N  KS   F+ FVD++L      G     L+   +L +V     + ++W+  A+
Sbjct:    59 -----RNIQKS---FVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDV-NRWICNAL 109

Query:   133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLF--GCKLEQPSHCANLQSLKKLSL 190
             E+GV EL   +   K     LP  IF++  L  L L    C    P+ C +L SLK L L
Sbjct:   110 EHGVSELHLRIDYTKRC--HLPSEIFTSTKLVKLSLVTQSCFPVVPN-CISLPSLKVLFL 166

Query:   191 DEVYVNDQMVQSLVRECRVLEDLSFF 216
             D ++         +  C  LEDL+ +
Sbjct:   167 DSIWFEVPQFLIFLTACPALEDLTIY 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
 Identities = 37/135 (27%), Positives = 66/135 (48%)

Query:   128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKK 187
             +E AM + V  L     +     N  P   +++  L  ++L    L  PS   +  SL+ 
Sbjct:   115 IEFAMSHNVDNLSL-AFSSFPPCNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRD 172

Query:   188 LSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL--RFTYQE-L 244
             LSL    ++D+    ++  C +LE LS  +C  LK L +S++ +L  L +  R  ++E +
Sbjct:   173 LSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCFREPM 232

Query:   245 ESVEIAVPSLQQLEL 259
             +S++I  P +  L L
Sbjct:   233 QSMQIVAPHIHYLRL 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 78/314 (24%), Positives = 138/314 (43%)

Query:    64 KRVLPFNLE--DMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESS 121
             K V  FNL   D   R  F      F+RFVD S   F      +Q  R+        E  
Sbjct:    55 KYVPGFNLSYCDFHVRNTFSYDHNTFLRFVD-SFMGFNSQSC-LQSFRLEYDSSGYGEPK 112

Query:   122 -PLFDKWVELAMENGVKELDFEVITDK--NSVNALPQTIFSAKLLTSLKLFGCKLEQPSH 178
               L  +W+   +   VK L   V+ D   N    +P T+++ + L  L L G  L  P  
Sbjct:   113 LALIRRWINSVVSRKVKYLG--VLDDSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKF 170

Query:   179 CANLQSLKKLSLDEVYVNDQM-VQSLVRECRVLEDLSF--FYCFGLKRLRISEAHKLKSL 235
               +L SLK+L L  V   D M +++L+ +C VLE+L+    +C   +   +     L   
Sbjct:   171 -VSLPSLKELHLSIVKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFT 229

Query:   236 ILRFTYQEL-ESVEIAV--PSLQQLELSFSRVPRLL--DVAECPHLRKLVLFLPHFNDQE 290
              +  T + L E + +A+  P L+ L LS  R+   +  D+A         +F      + 
Sbjct:   230 HVADTDEMLNEDLVVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVF-NLICKKM 288

Query:   291 FHPL-ISKFPLLEDLSIISLETLERIMISSNRLMHLEVYN-CSGLNRI-NVDAPNLVSFD 347
             F+P  ++K  ++ D  ++ + +++ ++I+S+ L  +  Y+ C  L    N+ +  +  + 
Sbjct:   289 FNPNDLNKRNMIRDF-LVGISSIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSLRVDFYG 347

Query:   348 FEDNPIPIVSTNAP 361
             ++   +PI   + P
Sbjct:   348 YKWEMLPIFLESCP 361

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	531
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.62
KOG4341	483	consensus F-box protein containing LRR [General fu	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.44
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.41
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.98
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.96
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.94
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.9
KOG4341	483	consensus F-box protein containing LRR [General fu	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.75
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.57
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.43
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.21
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.65
PLN03150	623	hypothetical protein; Provisional	97.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.43
PLN03150	623	hypothetical protein; Provisional	97.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.65
PRK15386	426	type III secretion protein GogB; Provisional	96.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.08
PRK15386	426	type III secretion protein GogB; Provisional	95.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.61
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.42
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	93.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.56
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.92
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.37
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	91.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	88.53
PF13013	109	F-box-like_2: F-box-like domain	83.15
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.64
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	82.29

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=1.5e-18  Score=198.69  Aligned_cols=155  Identities=23%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             CCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccc
Q 009616          153 LPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISE  228 (531)
Q Consensus       153 lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~  228 (531)
                      +|..+..+++|++|+|++|.+.+  |..++++++|++|+|++|.+.+. ++..++++++|++|+|++|...+.++  +.+
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            44444444555555555544433  33444455555555544444221 22334444555555554444332221  234


Q ss_pred             cccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          229 AHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       229 l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                      +++|++|++++|.  +.++....++++|++|++++|.  +..|..+.++++|+.|++++|.+++. ++..+.++++|+.|
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L  313 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEIL  313 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEE
Confidence            4455555555443  1222222344455555555544  33344444455555555554444422 23334445555555


Q ss_pred             Eeccc
Q 009616          305 SIISL  309 (531)
Q Consensus       305 ~L~~c  309 (531)
                      ++++|
T Consensus       314 ~l~~n  318 (968)
T PLN00113        314 HLFSN  318 (968)
T ss_pred             ECCCC
Confidence            55544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=3.2e-18  Score=195.92  Aligned_cols=263  Identities=15%  Similarity=0.163  Sum_probs=170.6

Q ss_pred             HcCCcEEEEeeecCCCccccCCcccc-CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      .++++.|+|+.  + .....+|..++ .+++|++|+|++|.+.+....+.+++|++|+|++|.+++ .++..++++++|+
T Consensus        92 l~~L~~L~Ls~--n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~  167 (968)
T PLN00113         92 LPYIQTINLSN--N-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLK  167 (968)
T ss_pred             CCCCCEEECCC--C-ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCC
Confidence            35788888875  2 22336777766 788899999998888762233568888889888888753 2455578888888


Q ss_pred             eEEeeecCCccee--eccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC
Q 009616          212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH  285 (531)
Q Consensus       212 ~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~  285 (531)
                      +|+|++|...+.+  .+.++++|++|++++|.  +.++.....+++|+.|++++|.  +..|..++.+++|+.|++++|.
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            8888888765443  24567888888888886  3334444567888888888887  4566678888888888888887


Q ss_pred             CChhhhhhhhcCCCCCcEEEeccccchh---HHHhcCcccceeccccccchhhh---cccCCCcceeEeecCC----cCc
Q 009616          286 FNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYNCSGLNRI---NVDAPNLVSFDFEDNP----IPI  355 (531)
Q Consensus       286 ~~~~~~~~~l~~~~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~c~~L~~l---~~~~~nL~sl~~~~~~----~p~  355 (531)
                      +++. ++..+.++++|+.|++++|....   ......++|+.|++.+|.-...+   ....++|+.+.+.+..    .|.
T Consensus       248 l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        248 LTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             eccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            7743 44556778888888888775322   12223456777777665311111   1123455555554443    244


Q ss_pred             eecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeee
Q 009616          356 VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL  405 (531)
Q Consensus       356 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~  405 (531)
                      .+..+++|+.|+++. +..    .+.++..+..+++|+.|+++.|...+.
T Consensus       327 ~~~~l~~L~~L~L~~-n~l----~~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        327 ALTSLPRLQVLQLWS-NKF----SGEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             hHhcCCCCCEEECcC-CCC----cCcCChHHhCCCCCcEEECCCCeeEee
Confidence            455677777777763 222    223344556667777777766555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.4e-18  Score=159.83  Aligned_cols=268  Identities=21%  Similarity=0.292  Sum_probs=134.6

Q ss_pred             CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh------hccCCeeeeecCccccccccccccccchhhhhhhhhhhHh
Q 009616           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF------QTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKS   83 (531)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l------w~~~~~L~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   83 (531)
                      +..|||||+..||+.|+.||+.+.+.|||||.++      |..   ++.....+-+                        
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p------------------------  150 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP------------------------  150 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh------------------------
Confidence            6789999999999999999999999999999976      554   3333333300                        


Q ss_pred             HHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCCc
Q 009616           84 LRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLL  163 (531)
Q Consensus        84 ~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L  163 (531)
                           ....+.+    .+  ++..|++.  .... . ...+... ....+.+++.+||+.  .......+-.-+..|+.|
T Consensus       151 -----~~l~~l~----~r--gV~v~Rla--r~~~-~-~prlae~-~~~frsRlq~lDLS~--s~it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  151 -----DVLGRLL----SR--GVIVFRLA--RSFM-D-QPRLAEH-FSPFRSRLQHLDLSN--SVITVSTLHGILSQCSKL  212 (419)
T ss_pred             -----hHHHHHH----hC--CeEEEEcc--hhhh-c-Cchhhhh-hhhhhhhhHHhhcch--hheeHHHHHHHHHHHHhh
Confidence                 1122222    11  22222222  1100 0 0001000 011223566666665  111112222223345555


Q ss_pred             cEEEecCCcCCC--CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEee
Q 009616          164 TSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFT  240 (531)
Q Consensus       164 ~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~  240 (531)
                      +.|.|.|+++..  ...++.-.+|+.|+|+.+.- +..+++-++++|+.|.+|+|+.|....+.                
T Consensus       213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~----------------  276 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK----------------  276 (419)
T ss_pred             hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh----------------
Confidence            555555555544  22333344455555544432 44444444455555555555555433221                


Q ss_pred             ccccceeee--eCCcccEEEecccc-----ccceeeccCCCCccEEEEeCC-CCChhhhhhhhcCCCCCcEEEeccccch
Q 009616          241 YQELESVEI--AVPSLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLP-HFNDQEFHPLISKFPLLEDLSIISLETL  312 (531)
Q Consensus       241 ~~~l~~~~~--~~~~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~l~~~~~L~~L~L~~c~~l  312 (531)
                          ..+.+  --++|..|+++|+.     .....-...||+|..|+|+.+ .++. .....+-+++.|++|.++.|..+
T Consensus       277 ----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  277 ----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             ----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC
Confidence                00000  12455555555554     111112345677777777543 3454 34445667888888888888764


Q ss_pred             hHHH----hcCcccceecccccc---chhhhcccCCCc
Q 009616          313 ERIM----ISSNRLMHLEVYNCS---GLNRINVDAPNL  343 (531)
Q Consensus       313 ~~l~----~~~~~L~~L~l~~c~---~L~~l~~~~~nL  343 (531)
                      ..-.    ...|.|.+|++.+|-   .++.+....|++
T Consensus       352 ~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~l  389 (419)
T KOG2120|consen  352 IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHL  389 (419)
T ss_pred             ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccc
Confidence            3221    124678888888763   334444444454

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.62  E-value=6.3e-17  Score=161.24  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      ++++++.+..    .....+|........|+.|+|.+|.+..  ...+..+|.|++|||+.|.++.-..+ .+..-++++
T Consensus       102 ~nLq~v~l~~----N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~  176 (873)
T KOG4194|consen  102 PNLQEVNLNK----NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIK  176 (873)
T ss_pred             Ccceeeeecc----chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCce
Confidence            4677776654    4556666655555667777777776655  34455677777777777766331111 123345677


Q ss_pred             eEEeeecCC--cceeeccccccccEEEEEeec-cccceeee-eCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC
Q 009616          212 DLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QELESVEI-AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH  285 (531)
Q Consensus       212 ~L~L~~c~~--~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~  285 (531)
                      +|+|++|..  ++.-.+.++.+|..|.++.|. ..++...+ ++|.|+.|+|..|.  ......|.++++|+.|.|..|.
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence            777777754  222233445566666676665 33333333 46777777776666  1123345666666666665555


Q ss_pred             CChhhhhhhhcCCCCCcEEEeccc
Q 009616          286 FNDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       286 ~~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      +.. .-...+-.+.+++.|+|+.+
T Consensus       257 I~k-L~DG~Fy~l~kme~l~L~~N  279 (873)
T KOG4194|consen  257 ISK-LDDGAFYGLEKMEHLNLETN  279 (873)
T ss_pred             ccc-ccCcceeeecccceeecccc
Confidence            442 11122334555555555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.60  E-value=3.6e-17  Score=157.33  Aligned_cols=336  Identities=19%  Similarity=0.202  Sum_probs=180.7

Q ss_pred             cCC-CCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhccCCeeeeecCccccccccccccccchhhhhhhhhhhHhHHHH
Q 009616            9 HIS-DLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCKSLRKF   87 (531)
Q Consensus         9 ~is-~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~~~~L~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f   87 (531)
                      -++ .||.|++.+|||+|+++.++|++++|+-|..+--.  ...+...+.++.++|       .+               
T Consensus        70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD--~~~~q~idL~t~~rD-------v~---------------  125 (483)
T KOG4341|consen   70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD--GSCWQHIDLFTFQRD-------VD---------------  125 (483)
T ss_pred             cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc--cccceeeehhcchhc-------CC---------------
Confidence            344 49999999999999999999999999999976211  111222222222211       00               


Q ss_pred             HHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHH--HHcCCcEEEEeeecCCCccccCCcc-----ccCC
Q 009616           88 IRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELA--MENGVKELDFEVITDKNSVNALPQT-----IFSA  160 (531)
Q Consensus        88 ~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~--~~~~l~~L~L~~~~~~~~~~~lp~~-----l~~~  160 (531)
                      ...|..++   .+-++.++.++++-...       .-++-+..+  ..+++++|.+.+.      +.+...     -..|
T Consensus       126 g~VV~~~~---~Rcgg~lk~LSlrG~r~-------v~~sslrt~~~~CpnIehL~l~gc------~~iTd~s~~sla~~C  189 (483)
T KOG4341|consen  126 GGVVENMI---SRCGGFLKELSLRGCRA-------VGDSSLRTFASNCPNIEHLALYGC------KKITDSSLLSLARYC  189 (483)
T ss_pred             CcceehHh---hhhcccccccccccccc-------CCcchhhHHhhhCCchhhhhhhcc------eeccHHHHHHHHHhc
Confidence            11233334   22336667666663321       111112222  2246777765541      122211     1246


Q ss_pred             CCccEEEecCCcC-CC---CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceeec----ccccc
Q 009616          161 KLLTSLKLFGCKL-EQ---PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRI----SEAHK  231 (531)
Q Consensus       161 ~~L~~L~L~~~~l-~~---~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~----~~l~~  231 (531)
                      +.|++|+|..|.. +.   ......|++|++|+++.+.. .+..++.+..+|..++.+.+++|...+.-.+    ..++.
T Consensus       190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~  269 (483)
T KOG4341|consen  190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE  269 (483)
T ss_pred             chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence            7777777777632 22   11234567777777776654 5555666666777777776666655443111    13455


Q ss_pred             ccEEEEEeec----cccceeeeeCCcccEEEeccccc--cc--eeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCc
Q 009616          232 LKSLILRFTY----QELESVEIAVPSLQQLELSFSRV--PR--LLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLE  302 (531)
Q Consensus       232 L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~~--~~--~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~  302 (531)
                      +.++++..|.    ..+..+.-.+..|+.+.++++..  ..  ..-..++++|+.|.+..+. +++..+..+-.+++.|+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            5566655554    11222233567777777777761  11  1123456778877775544 66555666667777888


Q ss_pred             EEEeccccc-----hhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChh
Q 009616          303 DLSIISLET-----LERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTH  377 (531)
Q Consensus       303 ~L~L~~c~~-----l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~  377 (531)
                      .+++..|..     +..+...++.|+.+.++.|.......+.  .+   .       ...-.+..|..+.++.    .-.
T Consensus       350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~--~l---~-------~~~c~~~~l~~lEL~n----~p~  413 (483)
T KOG4341|consen  350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR--HL---S-------SSSCSLEGLEVLELDN----CPL  413 (483)
T ss_pred             hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh--hh---h-------hccccccccceeeecC----CCC
Confidence            888877754     3334445677777777766543222000  00   0       0011234566666663    112


Q ss_pred             hhhhHHHHHhhccccceeEEEee
Q 009616          378 WYLNLMEFIGAFNQIGELHLSLN  400 (531)
Q Consensus       378 ~~~~l~~~l~~l~~L~~L~L~~~  400 (531)
                      .....-+.+.++++||.+++...
T Consensus       414 i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  414 ITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             chHHHHHHHhhCcccceeeeech
Confidence            23334466677777777776643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.55  E-value=6.4e-16  Score=154.18  Aligned_cols=269  Identities=16%  Similarity=0.101  Sum_probs=160.6

Q ss_pred             cCCcEEEEeeecCCCccccCCcccc-CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIF-SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .-++.|||+.    .....+|..-+ .-.++++|+|++|+++.  ...+.++.+|.+|.|++|+++.- .+..+.++|.|
T Consensus       149 ~alrslDLSr----N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L  223 (873)
T KOG4194|consen  149 PALRSLDLSR----NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKL  223 (873)
T ss_pred             hhhhhhhhhh----chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchh
Confidence            4577777765    23344443323 34678888888888876  55667788888888888888542 34556778888


Q ss_pred             ceEEeeecCC--cceeeccccccccEEEEEeec-ccccee-eeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616          211 EDLSFFYCFG--LKRLRISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       211 e~L~L~~c~~--~~~l~~~~l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      +.|+|..|..  .+.+.+.++++|+.|.+..|. ..+..- ...+.+++.|+|+.|.  .....++-++++|+.|+|++|
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            8888888754  334556678888888888776 333332 3367788888888777  223345667788888888887


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCc
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPL  364 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~  364 (531)
                      .|..- -...-+-++.|+.|+|+++.. +.       |..=.+.....|+.+.++.+.+.++.      .-.+..+++|+
T Consensus       304 aI~ri-h~d~WsftqkL~~LdLs~N~i-~~-------l~~~sf~~L~~Le~LnLs~Nsi~~l~------e~af~~lssL~  368 (873)
T KOG4194|consen  304 AIQRI-HIDSWSFTQKLKELDLSSNRI-TR-------LDEGSFRVLSQLEELNLSHNSIDHLA------EGAFVGLSSLH  368 (873)
T ss_pred             hhhee-ecchhhhcccceeEecccccc-cc-------CChhHHHHHHHhhhhcccccchHHHH------hhHHHHhhhhh
Confidence            77632 222334567888888877431 11       11111222334455555444432221      01233466777


Q ss_pred             EEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          365 NVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       365 ~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      +|+++. +.+..-..+ ....+..++.|++|.+.+|..+.   ||+-     -+..+.+|+||+|..|
T Consensus       369 ~LdLr~-N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~---I~kr-----Afsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  369 KLDLRS-NELSWCIED-AAVAFNGLPSLRKLRLTGNQLKS---IPKR-----AFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhcCcC-CeEEEEEec-chhhhccchhhhheeecCceeee---cchh-----hhccCcccceecCCCC
Confidence            777764 333322222 23445567777777777555443   4421     2344677777777766

>PLN03210 Resistant to P

Probab=99.51  E-value=4.8e-14  Score=162.48  Aligned_cols=272  Identities=18%  Similarity=0.169  Sum_probs=143.3

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .++.|.+..    .....+|..+ ...+|+.|++++|.+.. +.+...+++|+.|+|+++.... .++. ++.+++|+.|
T Consensus       590 ~Lr~L~~~~----~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L  662 (1153)
T PLN03210        590 KLRLLRWDK----YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETL  662 (1153)
T ss_pred             ccEEEEecC----CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEE
Confidence            566666654    2345566554 45777778877777665 5566677777777777654311 1222 4567777777


Q ss_pred             EeeecCCcceee--ccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCC
Q 009616          214 SFFYCFGLKRLR--ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       214 ~L~~c~~~~~l~--~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      +|.+|..+..++  +.++++|+.|++++|.  ..++. .+++++|+.|++++|.  ...|.   ..++|+.|+++++.++
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE  738 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc
Confidence            777776655543  3356677777777765  22221 1255666666666664  11111   1234455555444432


Q ss_pred             hh----------------------------hhhhhhcCCCCCcEEEeccccchhHHH---hcCcccceeccccccchhhh
Q 009616          288 DQ----------------------------EFHPLISKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCSGLNRI  336 (531)
Q Consensus       288 ~~----------------------------~~~~~l~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l  336 (531)
                      .-                            ..+.....+++|+.|+|++|..+..+.   ..+++|+.|++.+|.+++.+
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            10                            000001123466666666665433322   23456677777777666554


Q ss_pred             cc--cCCCcceeEeecCCcCcee-cCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccc
Q 009616          337 NV--DAPNLVSFDFEDNPIPIVS-TNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRS  413 (531)
Q Consensus       337 ~~--~~~nL~sl~~~~~~~p~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~  413 (531)
                      ..  ..++|+.+.++++..-..+ ....+|+.|+++. +.+     ..++..+.++++|+.|++..+.....  +|    
T Consensus       819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i-----~~iP~si~~l~~L~~L~L~~C~~L~~--l~----  886 (1153)
T PLN03210        819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGI-----EEVPWWIEKFSNLSFLDMNGCNNLQR--VS----  886 (1153)
T ss_pred             CCCCCccccCEEECCCCCccccccccccccCEeECCC-CCC-----ccChHHHhcCCCCCEEECCCCCCcCc--cC----
Confidence            32  2345566666554321111 1134667777763 221     12344556677777777665443333  44    


Q ss_pred             cCCCCCCCcccceEEEEE
Q 009616          414 CHPSLPLQVESLSLFMES  431 (531)
Q Consensus       414 ~~~~~~~~~~L~~L~L~~  431 (531)
                        +.+..+++|+.+.+..
T Consensus       887 --~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        887 --LNISKLKHLETVDFSD  902 (1153)
T ss_pred             --cccccccCCCeeecCC
Confidence              1344455555555554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.44  E-value=5.2e-13  Score=154.03  Aligned_cols=256  Identities=18%  Similarity=0.150  Sum_probs=161.3

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .++++|++..    .....+|..+..+++|+.|+|++|.... .+.++.+++|++|+|++|... ..++..+.++++|+.
T Consensus       611 ~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcC----ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCE
Confidence            4677777754    2344566667777888888888764333 445677888888888876542 235555777888888


Q ss_pred             EEeeecCCcceeecc-ccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeec--------------------
Q 009616          213 LSFFYCFGLKRLRIS-EAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDV--------------------  270 (531)
Q Consensus       213 L~L~~c~~~~~l~~~-~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~--------------------  270 (531)
                      |++++|..++.++.. ++++|+.|++++|. .+..+....++|++|+++++. ...|..+                    
T Consensus       686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        686 LDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             EeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence            888888777766543 56788888888876 333332234677888887776 3222211                    


Q ss_pred             ----------cCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhc--Ccccceeccccccchhhhcc
Q 009616          271 ----------AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS--SNRLMHLEVYNCSGLNRINV  338 (531)
Q Consensus       271 ----------~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~l~~  338 (531)
                                ...++|+.|+|++|..... ++..++++++|+.|+|++|..++.+...  .++|+.|++++|.+++.+.-
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                      1124666777766654433 4445677888888888888766554332  46778888888877766544


Q ss_pred             cCCCcceeEeecCCc---CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeee
Q 009616          339 DAPNLVSFDFEDNPI---PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY  401 (531)
Q Consensus       339 ~~~nL~sl~~~~~~~---p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~  401 (531)
                      ...+++.+.+.+..+   |.++..+++|+.|++++++....     ++..+..+++|+.+.++.+.
T Consensus       844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence            445677777666543   45566778888888864222221     22334566677777766443

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.41  E-value=7.7e-15  Score=147.47  Aligned_cols=261  Identities=20%  Similarity=0.150  Sum_probs=187.6

Q ss_pred             CCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616          147 KNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-  224 (531)
Q Consensus       147 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-  224 (531)
                      .-....+|..++.+..|+.|+|+.|++.. |..+..-+++-.|+|++|.+.. ....++.++.-|-.|+|++|.. ..+ 
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrL-e~LP  166 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRL-EMLP  166 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchh-hhcC
Confidence            34556899999999999999999999987 8888888999999999998832 3455677888888999988864 322 


Q ss_pred             -eccccccccEEEEEeec---cccceeeeeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhhhhhhhcC
Q 009616          225 -RISEAHKLKSLILRFTY---QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISK  297 (531)
Q Consensus       225 -~~~~l~~L~~L~l~~~~---~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~  297 (531)
                       .+..+..|++|++++|.   ..+..+ -.+++|+.|++++..   ..+|.++..+.+|..++++.|++..  +++.+-+
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~  243 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYK  243 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhh
Confidence             24467789999999886   111111 145678888888877   6678889999999999999998863  5666778


Q ss_pred             CCCCcEEEeccccc------------hhHHHhcCcccceeccccc--cchhhhcccCCCcceeEeecCCcCceecCCCCC
Q 009616          298 FPLLEDLSIISLET------------LERIMISSNRLMHLEVYNC--SGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP  363 (531)
Q Consensus       298 ~~~L~~L~L~~c~~------------l~~l~~~~~~L~~L~l~~c--~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L  363 (531)
                      +++|+.|+|+++..            ++.+..+-++|..|.-.-|  ++|+.+-.+.++|   .+  ..+|..+|.+.+|
T Consensus       244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL---~F--eGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL---TF--EGIPSGIGKLIQL  318 (1255)
T ss_pred             hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc---cc--cCCccchhhhhhh
Confidence            99999999998642            2233333344444432223  4566665555554   22  2467777888888


Q ss_pred             cEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          364 LNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       364 ~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      +.+...+      .....+++.+..|+.|+.|.|..|..  .+ +|+      .+--++.|+.|++..|
T Consensus       319 evf~aan------N~LElVPEglcRC~kL~kL~L~~NrL--iT-LPe------aIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  319 EVFHAAN------NKLELVPEGLCRCVKLQKLKLDHNRL--IT-LPE------AIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHHhhc------cccccCchhhhhhHHHHHhcccccce--ee-chh------hhhhcCCcceeeccCC
Confidence            8877763      23345678889999999999986654  33 773      4556789999999965

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.37  E-value=1.6e-15  Score=152.32  Aligned_cols=272  Identities=15%  Similarity=0.135  Sum_probs=181.7

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|.+.-    .....+-..+..++.|+++.+..|++..   |+.+..+.-|+.|+|++|++.+  .+.-+....++
T Consensus        55 qkLEHLs~~H----N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~  128 (1255)
T KOG0444|consen   55 QKLEHLSMAH----NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNS  128 (1255)
T ss_pred             hhhhhhhhhh----hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCc
Confidence            3677776643    3344455556677888888888887754   7777888888888888888743  44556677888


Q ss_pred             ceEEeeecCCcceee---ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-cc-ceeeccCCCCccEEEEeCC
Q 009616          211 EDLSFFYCFGLKRLR---ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       211 e~L~L~~c~~~~~l~---~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~  284 (531)
                      -.|+|++|+. ..++   ..++..|-.||+++|. ..+++-...+.+|++|.|++|. .. ..-.+..+++|+.|++++.
T Consensus       129 iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  129 IVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence            8888888764 2222   2246778888888887 5566555677888999999887 22 2224566777888888887


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccc--hhHHHhcCcccceecccc------------ccchhhhcccCCCcceeEeec
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLET--LERIMISSNRLMHLEVYN------------CSGLNRINVDAPNLVSFDFED  350 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~~l~~~~~~L~~L~l~~------------c~~L~~l~~~~~nL~sl~~~~  350 (531)
                      +-|-..++..+..+.||..++++.++.  +..-....++|+.|++++            ..+++.+.++.+.|..     
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-----  282 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-----  282 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-----
Confidence            777666777777888899999886542  222222345666666665            2345555555555432     


Q ss_pred             CCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEE
Q 009616          351 NPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFME  430 (531)
Q Consensus       351 ~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~  430 (531)
                        .|.....++.|++|.+.. +..   ....++..++.+.+|+.+....|.  ... +|      ..+..+..|+.|.|.
T Consensus       283 --LP~avcKL~kL~kLy~n~-NkL---~FeGiPSGIGKL~~Levf~aanN~--LEl-VP------EglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  283 --LPDAVCKLTKLTKLYANN-NKL---TFEGIPSGIGKLIQLEVFHAANNK--LEL-VP------EGLCRCVKLQKLKLD  347 (1255)
T ss_pred             --chHHHhhhHHHHHHHhcc-Ccc---cccCCccchhhhhhhHHHHhhccc--ccc-Cc------hhhhhhHHHHHhccc
Confidence              266666788888888863 222   233455667777888877666443  333 67      267788899999998


Q ss_pred             Ee
Q 009616          431 SF  432 (531)
Q Consensus       431 ~~  432 (531)
                      .|
T Consensus       348 ~N  349 (1255)
T KOG0444|consen  348 HN  349 (1255)
T ss_pred             cc
Confidence            77

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.17  E-value=3.1e-11  Score=120.35  Aligned_cols=85  Identities=19%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             CCcEEEEeeecC-CCccccCCccccCCCCccEEEecCCcCCC--------CcCCCCCCccCEEEeeeEEechH---hHHH
Q 009616          135 GVKELDFEVITD-KNSVNALPQTIFSAKLLTSLKLFGCKLEQ--------PSHCANLQSLKKLSLDEVYVNDQ---MVQS  202 (531)
Q Consensus       135 ~l~~L~L~~~~~-~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--------~~~~~~l~~L~~L~L~~~~~~~~---~l~~  202 (531)
                      +++++++....- ......++..+...++|++|+++++.+.+        +..+..+++|++|++++|.+...   .+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            477777665110 00112344445555667777777665541        12334456666666666665321   1222


Q ss_pred             HHhCCcccceEEeeecCC
Q 009616          203 LVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       203 ~l~~~~~Le~L~L~~c~~  220 (531)
                      +..+ ++|++|++++|..
T Consensus       104 l~~~-~~L~~L~ls~~~~  120 (319)
T cd00116         104 LLRS-SSLQELKLNNNGL  120 (319)
T ss_pred             Hhcc-CcccEEEeeCCcc
Confidence            2222 4466666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.16  E-value=7.9e-11  Score=127.27  Aligned_cols=255  Identities=19%  Similarity=0.157  Sum_probs=157.6

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+-..|+++.    .....+|..+.  ++|+.|++++|++.. |.   ..++|++|+|++|.++.  ++.   ..++|++
T Consensus       201 ~~~~~LdLs~----~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE  266 (788)
T ss_pred             CCCcEEEcCC----CCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence            4566677764    34557888765  479999999999887 43   36899999999998853  332   2478999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~  291 (531)
                      |++.+|... .++. ...+|+.|++++|.  +..+....++|+.|++++|. ...|.   ...+|+.|++++|.++.  +
T Consensus       267 L~Ls~N~L~-~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~--L  337 (788)
T PRK15387        267 LSIFSNPLT-HLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--L  337 (788)
T ss_pred             eeccCCchh-hhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC---CcccccccccccCcccc--c
Confidence            999888642 2221 12578889998886  22222245789999999987 33332   12367888888888763  2


Q ss_pred             hhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEee
Q 009616          292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNF  371 (531)
Q Consensus       292 ~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~  371 (531)
                      +.+   .++|+.|+|++|. +..+....++|+.|.+.+. .+..+.-...+|+.+.+.+..+...-...++|+.|++++ 
T Consensus       338 P~l---p~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~-  411 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG-  411 (788)
T ss_pred             ccc---ccccceEecCCCc-cCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCCcccCCCEEEccC-
Confidence            322   2478889888764 2223223345666665542 232222222355556555544321001235788999985 


Q ss_pred             ccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009616          372 GDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (531)
Q Consensus       372 ~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~  434 (531)
                      +.+..     ++..   ..+|+.|+++.|...  . ||+      .+..+.+|+.|+|++|..
T Consensus       412 N~Lss-----IP~l---~~~L~~L~Ls~NqLt--~-LP~------sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        412 NRLTS-----LPML---PSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CcCCC-----CCcc---hhhhhhhhhccCccc--c-cCh------HHhhccCCCeEECCCCCC
Confidence            43332     1222   245777788765544  3 772      455678999999999843

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.13  E-value=3.4e-13  Score=129.40  Aligned_cols=156  Identities=18%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecc
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS  227 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~  227 (531)
                      ....+|..+++|.+|..|++.+|++.. |+...+++.|++|+...|-++  .++.-++.+..|+-|+|..|....-..+.
T Consensus       148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef~  225 (565)
T KOG0472|consen  148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPEFP  225 (565)
T ss_pred             ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCCCC
Confidence            345566666666666666666666555 444444666666666555442  24444566666666666666543333444


Q ss_pred             ccccccEEEEEeec-cccceee-eeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          228 EAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       228 ~l~~L~~L~l~~~~-~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                      +|..|++|.++.|. ..++.-. .++++|..|++.+|. ...|..+--+++|..|++++|.+++  ++.-++++ .|+.|
T Consensus       226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFL  302 (565)
T ss_pred             ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeeh
Confidence            55556666655554 2222222 245555555555555 4444455555555555555555553  23334444 55555


Q ss_pred             Eeccc
Q 009616          305 SIISL  309 (531)
Q Consensus       305 ~L~~c  309 (531)
                      .+.++
T Consensus       303 ~leGN  307 (565)
T KOG0472|consen  303 ALEGN  307 (565)
T ss_pred             hhcCC
Confidence            55554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.01  E-value=2.4e-11  Score=128.18  Aligned_cols=146  Identities=21%  Similarity=0.163  Sum_probs=74.7

Q ss_pred             CCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eeccccccccEEEEEe
Q 009616          161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAHKLKSLILRF  239 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~~L~~L~l~~  239 (531)
                      ++|+.|+...|.+........-.+|++++++.+.+..  ++.+++.|++|+.++..+|....- ..+....+|+.|.+..
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhc--chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence            4455555555544431111123456777777776643  557777777777777777655111 1111223344444443


Q ss_pred             ec-cccceeeeeCCcccEEEecccc-cccee------------------------ec--cCCCCccEEEEeCCCCChhhh
Q 009616          240 TY-QELESVEIAVPSLQQLELSFSR-VPRLL------------------------DV--AECPHLRKLVLFLPHFNDQEF  291 (531)
Q Consensus       240 ~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~------------------------~~--~~~~~L~~L~L~~~~~~~~~~  291 (531)
                      |. ..++.......+|++|++..|. ...|.                        ..  ...+.|+.|++.+|.+++..+
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~  376 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF  376 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence            33 2222222223333444443333 11111                        11  234567777888888886655


Q ss_pred             hhhhcCCCCCcEEEeccc
Q 009616          292 HPLISKFPLLEDLSIISL  309 (531)
Q Consensus       292 ~~~l~~~~~L~~L~L~~c  309 (531)
                      + .+.++++|+.|+|+++
T Consensus       377 p-~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  377 P-VLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             h-hhccccceeeeeeccc
Confidence            4 3567888888888875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.00  E-value=4e-10  Score=112.32  Aligned_cols=154  Identities=19%  Similarity=0.073  Sum_probs=77.8

Q ss_pred             cccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEec--hH---hHHHHHhCCcccceEEeeecCCccee
Q 009616          156 TIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVN--DQ---MVQSLVRECRVLEDLSFFYCFGLKRL  224 (531)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~---~l~~~l~~~~~Le~L~L~~c~~~~~l  224 (531)
                      .+..+.+|++|++++|.+..      +......++|++|+++++.+.  ..   .+...+..+++|++|++++|......
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            33445668888888887743      223445677788887777654  22   22334556777888887777653221


Q ss_pred             --ecccc---ccccEEEEEeec-c--cccee---eeeC-CcccEEEecccc-c-----cceeeccCCCCccEEEEeCCCC
Q 009616          225 --RISEA---HKLKSLILRFTY-Q--ELESV---EIAV-PSLQQLELSFSR-V-----PRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       225 --~~~~l---~~L~~L~l~~~~-~--~l~~~---~~~~-~~L~~L~l~~~~-~-----~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                        .+..+   ++|++|++++|. .  ....+   .... ++|+.|++++|. .     .....+..++.|+.|+++++.+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence              11112   336677776664 1  00110   1122 555555555554 1     1112233445555555555555


Q ss_pred             Chhhhhh---hhcCCCCCcEEEeccc
Q 009616          287 NDQEFHP---LISKFPLLEDLSIISL  309 (531)
Q Consensus       287 ~~~~~~~---~l~~~~~L~~L~L~~c  309 (531)
                      ++.....   .+..+++|+.|++++|
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCC
Confidence            5432222   1223345555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.98  E-value=9.6e-12  Score=131.06  Aligned_cols=298  Identities=18%  Similarity=0.172  Sum_probs=159.1

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      +++.|.++.    ...+..|.+..+.++|++|.|.+|.+.. |.++..+.+|++|+++.|.+..  ++..+..+..++.+
T Consensus        69 ~L~~ln~s~----n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~  142 (1081)
T KOG0618|consen   69 HLRQLNLSR----NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEEL  142 (1081)
T ss_pred             HHhhcccch----hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHH
Confidence            566666643    3455677777777888888888877766 7777777888888888877732  23334444444444


Q ss_pred             EeeecCC-------------------cceeeccccccccE-EEEEeec-------------------cccceeeeeCCcc
Q 009616          214 SFFYCFG-------------------LKRLRISEAHKLKS-LILRFTY-------------------QELESVEIAVPSL  254 (531)
Q Consensus       214 ~L~~c~~-------------------~~~l~~~~l~~L~~-L~l~~~~-------------------~~l~~~~~~~~~L  254 (531)
                      ..++|..                   .+.+.+. ...|+. |++.+|.                   ..+..+...-++|
T Consensus       143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l  221 (1081)
T KOG0618|consen  143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSL  221 (1081)
T ss_pred             hhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcch
Confidence            4444411                   1111110 112222 3433332                   1233444556777


Q ss_pred             cEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhc---Ccccceecccc--
Q 009616          255 QQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS---SNRLMHLEVYN--  329 (531)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~---~~~L~~L~l~~--  329 (531)
                      +.|+...|.......-..-.+|+.++++.+.++.  +++++..|.+|+.+....+.. ..+...   ..+|+.|.+..  
T Consensus       222 ~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  222 TALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE  298 (1081)
T ss_pred             heeeeccCcceeeccccccccceeeecchhhhhc--chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh
Confidence            7777777762211122233478888888888874  447788888888888877543 111110   11222222111  


Q ss_pred             ----------ccchhhhcccCCCcceeEe---------------ecCCcC--ceec--CCCCCcEEEEEeeccCChhhhh
Q 009616          330 ----------CSGLNRINVDAPNLVSFDF---------------EDNPIP--IVST--NAPCPLNVLFSNFGDIDTHWYL  380 (531)
Q Consensus       330 ----------c~~L~~l~~~~~nL~sl~~---------------~~~~~p--~~~~--~~~~L~~L~l~~~~~~~~~~~~  380 (531)
                                .+.|..+++..++|.+|.-               +...++  .+.+  ..+.|+.|.+.+     +...+
T Consensus       299 l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-----N~Ltd  373 (1081)
T KOG0618|consen  299 LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-----NHLTD  373 (1081)
T ss_pred             hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-----Ccccc
Confidence                      2233344444444433221               000000  0111  234455666652     33333


Q ss_pred             hHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhcccccee
Q 009616          381 NLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLC  460 (531)
Q Consensus       381 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~  460 (531)
                      ..-..+.++.+||.|+|+.|....   +|.     ..+.++..|++|.|++|     +    ...+-+-+..+.+++||.
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~---fpa-----s~~~kle~LeeL~LSGN-----k----L~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNS---FPA-----SKLRKLEELEELNLSGN-----K----LTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             cchhhhccccceeeeeeccccccc---CCH-----HHHhchHHhHHHhcccc-----h----hhhhhHHHHhhhhhHHHh
Confidence            334567788899999988765432   452     13557888899999988     2    444445555566667766


Q ss_pred             ecCC
Q 009616          461 LSPE  464 (531)
Q Consensus       461 l~~~  464 (531)
                      ..+-
T Consensus       437 ahsN  440 (1081)
T KOG0618|consen  437 AHSN  440 (1081)
T ss_pred             hcCC
Confidence            6543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.96  E-value=1.7e-09  Score=117.00  Aligned_cols=131  Identities=18%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++.|.+..    .....+|..   .++|++|+|++|.+.. |.   ..++|+.|++++|.+..  ++.+   .+.|+.
T Consensus       222 ~~L~~L~L~~----N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~--Lp~l---p~~L~~  286 (788)
T PRK15387        222 AHITTLVIPD----NNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPAL---PSGLCK  286 (788)
T ss_pred             cCCCEEEccC----CcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchhh--hhhc---hhhcCE
Confidence            4788888865    334556652   4789999999998887 43   24788899998887642  3332   356777


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      |++++|... .++. ..++|+.|++++|. ..++.   ..++|+.|++++|. ..+|.   ..++|+.|+|++|.++
T Consensus       287 L~Ls~N~Lt-~LP~-~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        287 LWIFGNQLT-SLPV-LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLA  355 (788)
T ss_pred             EECcCCccc-cccc-cccccceeECCCCccccCCC---CcccccccccccCccccccc---cccccceEecCCCccC
Confidence            777777532 2222 23667777777775 22222   12345556666555 22221   1125666666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.94  E-value=1.2e-09  Score=118.91  Aligned_cols=155  Identities=15%  Similarity=0.115  Sum_probs=94.0

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      +..+|+++.    .....+|..+.  ++|+.|+|++|.+.. |..+  +++|++|++++|.++.  ++..+  .++|+.|
T Consensus       179 ~~~~L~L~~----~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L  246 (754)
T PRK15370        179 NKTELRLKI----LGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEM  246 (754)
T ss_pred             CceEEEeCC----CCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEE
Confidence            466666654    34456676553  578888888888876 4433  3588888888887742  33322  2478888


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~  291 (531)
                      +|++|... .++..-..+|+.|++++|. ..++..  -.++|+.|++++|. ...|..+.  ++|+.|++++|.++.  +
T Consensus       247 ~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~--l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~--L  319 (754)
T PRK15370        247 ELSINRIT-ELPERLPSALQSLDLFHNKISCLPEN--LPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA--L  319 (754)
T ss_pred             ECcCCccC-cCChhHhCCCCEEECcCCccCccccc--cCCCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc--C
Confidence            88887643 3332222478888888775 222221  12478888888877 33332222  467777787777763  2


Q ss_pred             hhhhcCCCCCcEEEecccc
Q 009616          292 HPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       292 ~~~l~~~~~L~~L~L~~c~  310 (531)
                      +..+  .++|+.|++++|.
T Consensus       320 P~~l--~~sL~~L~Ls~N~  336 (754)
T PRK15370        320 PETL--PPGLKTLEAGENA  336 (754)
T ss_pred             Cccc--cccceeccccCCc
Confidence            2111  2577777777764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.90  E-value=2.8e-11  Score=103.42  Aligned_cols=149  Identities=20%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             cccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eecccccccc
Q 009616          156 TIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAHKLK  233 (531)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~~L~  233 (531)
                      .++.+...+.|.|+.|+++. |+.++.+.+|+.|++++|++.+  ++..++++|.|+.|++.-|....- -.++++|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            35566777777788877776 7777778888888887777643  555577777777777765543211 1234567777


Q ss_pred             EEEEEeec---cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecc
Q 009616          234 SLILRFTY---QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS  308 (531)
Q Consensus       234 ~L~l~~~~---~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (531)
                      .||+++|.   ..++.-.+.+..|+.|++++|. ...|..++.+++|+.|.+..|.+-.  ++.-++.+..|+.|++.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence            77777665   2233333445566667777776 5556667777777777776665432  344455566666666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.90  E-value=1.6e-10  Score=112.08  Aligned_cols=223  Identities=21%  Similarity=0.260  Sum_probs=134.6

Q ss_pred             CCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceeec----ccccc
Q 009616          161 KLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLRI----SEAHK  231 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~----~~l~~  231 (531)
                      ..|+.|.++||.-.+    -....++|++++|.+.++.. ++..+..+-..|+.|++|++..|..++...+    .+|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            357778888775443    22345678888888887765 6777777777788888888888877665432    26788


Q ss_pred             ccEEEEEeec----cccceeeeeCCcccEEEecccccccee----eccCCCCccEEEE-eCCCCChhhhhhhhcCCCCCc
Q 009616          232 LKSLILRFTY----QELESVEIAVPSLQQLELSFSRVPRLL----DVAECPHLRKLVL-FLPHFNDQEFHPLISKFPLLE  302 (531)
Q Consensus       232 L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~L-~~~~~~~~~~~~~l~~~~~L~  302 (531)
                      |++|++++|.    .++.....++..++.+.+.||......    .-+.++.+.++++ ..+.+|+..+..+...+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888888887    233344446667777777776521111    1234555666665 445577766666777788888


Q ss_pred             EEEeccccch-----hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChh
Q 009616          303 DLSIISLETL-----ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTH  377 (531)
Q Consensus       303 ~L~L~~c~~l-----~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~  377 (531)
                      .|..++|..+     ..+...+++|+.+.+..|..+...-..               .---+.+.|+.+++..+.   ..
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft---------------~l~rn~~~Le~l~~e~~~---~~  359 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT---------------MLGRNCPHLERLDLEECG---LI  359 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh---------------hhhcCChhhhhhcccccc---ee
Confidence            8888888663     344555677777777777654221100               000134556666664211   11


Q ss_pred             hhhhHHHHHhhccccceeEEEeee
Q 009616          378 WYLNLMEFIGAFNQIGELHLSLNY  401 (531)
Q Consensus       378 ~~~~l~~~l~~l~~L~~L~L~~~~  401 (531)
                      ....+..+-.+++.|+.|.++.+.
T Consensus       360 ~d~tL~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  360 TDGTLASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             hhhhHhhhccCCchhccCChhhhh
Confidence            122334444566777777766443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.5e-10  Score=111.29  Aligned_cols=152  Identities=19%  Similarity=0.161  Sum_probs=106.8

Q ss_pred             CCCCccEEEecCCcCCC-C--cCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCccee---ecccccc
Q 009616          159 SAKLLTSLKLFGCKLEQ-P--SHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRL---RISEAHK  231 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l---~~~~l~~  231 (531)
                      +.++|+...|.++.... +  .....|++++.|+|++|-+ .-..+.+++.-+|+||.|+|+.|...-..   ....++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45777888888776655 2  2456788889999988877 33456677788899999999888653321   1124678


Q ss_pred             ccEEEEEeec---cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616          232 LKSLILRFTY---QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (531)
Q Consensus       232 L~~L~l~~~~---~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L  306 (531)
                      |+.|.+++|.   ..+..+...+|+|+.|++.+|.  .........+..|+.|+|++|++-+.........+|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            8999999887   2233344578899999998885  3333345567788888998888765444456778888888888


Q ss_pred             cccc
Q 009616          307 ISLE  310 (531)
Q Consensus       307 ~~c~  310 (531)
                      +.|.
T Consensus       279 s~tg  282 (505)
T KOG3207|consen  279 SSTG  282 (505)
T ss_pred             cccC
Confidence            8764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.83  E-value=1.2e-08  Score=111.17  Aligned_cols=212  Identities=15%  Similarity=0.191  Sum_probs=129.0

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++.|+++.    .....+|..+.  ++|+.|++++|.+.. |..+  .++|+.|+|++|.+..  ++..+  .++|+.
T Consensus       199 ~~L~~L~Ls~----N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~  266 (754)
T PRK15370        199 EQITTLILDN----NELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITE--LPERL--PSALQS  266 (754)
T ss_pred             cCCcEEEecC----CCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccCc--CChhH--hCCCCE
Confidence            4788888875    34457887664  589999999998887 4433  3579999999998742  33333  257999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |++++|.. ..++-.-.++|+.|++++|. ..++..  -.++|+.|++++|. ...|..+  .++|+.|++++|.++.  
T Consensus       267 L~Ls~N~L-~~LP~~l~~sL~~L~Ls~N~Lt~LP~~--lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~--  339 (754)
T PRK15370        267 LDLFHNKI-SCLPENLPEELRYLSVYDNSIRTLPAH--LPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS--  339 (754)
T ss_pred             EECcCCcc-CccccccCCCCcEEECCCCccccCccc--chhhHHHHHhcCCccccCCccc--cccceeccccCCcccc--
Confidence            99987754 34432223589999999886 222211  12468888888887 3333222  3678888888887764  


Q ss_pred             hhhhhcCCCCCcEEEeccccchhHHHh-cCcccceecccccc----------chhhhcccCCCcceeEeecCCcCceecC
Q 009616          291 FHPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNCS----------GLNRINVDAPNLVSFDFEDNPIPIVSTN  359 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~----------~L~~l~~~~~nL~sl~~~~~~~p~~~~~  359 (531)
                      ++..+  .++|+.|++++|.. ..+.. ..+.|+.|++.+|.          .|+.+++..+++..+.   ..+|.....
T Consensus       340 LP~~l--~~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP---~sl~~~~~~  413 (754)
T PRK15370        340 LPASL--PPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLP---ESLPHFRGE  413 (754)
T ss_pred             CChhh--cCcccEEECCCCCC-CcCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCc---hhHHHHhhc
Confidence            22222  36888888888743 22211 12467777776643          2344444444442210   011222334


Q ss_pred             CCCCcEEEEEe
Q 009616          360 APCPLNVLFSN  370 (531)
Q Consensus       360 ~~~L~~L~l~~  370 (531)
                      .+++..+++.+
T Consensus       414 ~~~l~~L~L~~  424 (754)
T PRK15370        414 GPQPTRIIVEY  424 (754)
T ss_pred             CCCccEEEeeC
Confidence            56777888874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.78  E-value=6.9e-11  Score=101.07  Aligned_cols=148  Identities=20%  Similarity=0.182  Sum_probs=117.8

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      ++..|.++-    .....+|+.+..+.+|++|++.+|++.. |..++.++.|+.|++.-|++.  .++.-++.+|.||.|
T Consensus        34 ~ITrLtLSH----NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levl  107 (264)
T KOG0617|consen   34 NITRLTLSH----NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhccc----CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhh
Confidence            344455542    4556788888999999999999999888 888999999999999877663  356668899999999


Q ss_pred             EeeecCCcceeec---cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616          214 SFFYCFGLKRLRI---SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (531)
Q Consensus       214 ~L~~c~~~~~l~~---~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~  288 (531)
                      +|.+|...+..-.   -.+..|+-|.++.|+ ..++.-...+++|+.|.+..|. ...|..++.++.|++|++.+|.++.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence            9998876443222   235788999999887 5556666688999999999998 7778899999999999999999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.77  E-value=4.7e-11  Score=114.94  Aligned_cols=251  Identities=17%  Similarity=0.127  Sum_probs=119.0

Q ss_pred             ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eeccccccccE
Q 009616          157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAHKLKS  234 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~~L~~  234 (531)
                      +.++..|++|++..|++.. |+.++.+..++.|+.++|.+..  ++.-+.+.+.|.+|+.++|....- -.++.+..|..
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED  141 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence            3344445555555554444 4444555555555555444321  333344444445554444433221 11223334444


Q ss_pred             EEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616          235 LILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL  312 (531)
Q Consensus       235 L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l  312 (531)
                      ++-.+|. ..++.-..++.+|..+.+.+|. ...|...-+++.|++|+...|-++  .++.-++.+..|+.|+|..+   
T Consensus       142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~N---  216 (565)
T KOG0472|consen  142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRN---  216 (565)
T ss_pred             hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhc---
Confidence            4444443 2333333344444444444444 222223333455555554444332  12223344444444444432   


Q ss_pred             hHHHhcCccccee-ccccccchhhhcccCCCcceeEeecCCcCceec-CCCCCcEEEEEeeccCChhhhhhHHHHHhhcc
Q 009616          313 ERIMISSNRLMHL-EVYNCSGLNRINVDAPNLVSFDFEDNPIPIVST-NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFN  390 (531)
Q Consensus       313 ~~l~~~~~~L~~L-~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~  390 (531)
                              +++.+ .+.+|+.|+++..+.+.++.       +|...+ +++++..||+.. ++.     ...+.-+.-+.
T Consensus       217 --------ki~~lPef~gcs~L~Elh~g~N~i~~-------lpae~~~~L~~l~vLDLRd-Nkl-----ke~Pde~clLr  275 (565)
T KOG0472|consen  217 --------KIRFLPEFPGCSLLKELHVGENQIEM-------LPAEHLKHLNSLLVLDLRD-NKL-----KEVPDEICLLR  275 (565)
T ss_pred             --------ccccCCCCCccHHHHHHHhcccHHHh-------hHHHHhcccccceeeeccc-ccc-----ccCchHHHHhh
Confidence                    12211 23345555555544433321       232222 577788888863 222     22334455677


Q ss_pred             ccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhc
Q 009616          391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIF  454 (531)
Q Consensus       391 ~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~  454 (531)
                      +|+.|+++.|..+  . +|      ++++.+ .|+.|.+.+|    |     ...+...+..++
T Consensus       276 sL~rLDlSNN~is--~-Lp------~sLgnl-hL~~L~leGN----P-----lrTiRr~ii~~g  320 (565)
T KOG0472|consen  276 SLERLDLSNNDIS--S-LP------YSLGNL-HLKFLALEGN----P-----LRTIRREIISKG  320 (565)
T ss_pred             hhhhhcccCCccc--c-CC------cccccc-eeeehhhcCC----c-----hHHHHHHHHccc
Confidence            8888888855543  3 67      477777 8999999998    5     444555444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=3.8e-10  Score=104.76  Aligned_cols=168  Identities=21%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             cCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEeecc----ccceeeeeCCcccEEE
Q 009616          185 LKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQ----ELESVEIAVPSLQQLE  258 (531)
Q Consensus       185 L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~~----~l~~~~~~~~~L~~L~  258 (531)
                      |++|||++..++...+..+++.|..|+.|.|.++..-..+.  +..=.+|+.|+++.|.+    ...-+..+|..|.+|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            55555555555444555555555555555555554433221  11114555555555550    1112223566777777


Q ss_pred             ecccc-cc--ceeecc-CCCCccEEEEeCCC--CChhhhhhhhcCCCCCcEEEeccccchhH----HHhcCcccceeccc
Q 009616          259 LSFSR-VP--RLLDVA-ECPHLRKLVLFLPH--FNDQEFHPLISKFPLLEDLSIISLETLER----IMISSNRLMHLEVY  328 (531)
Q Consensus       259 l~~~~-~~--~~~~~~-~~~~L~~L~L~~~~--~~~~~~~~~l~~~~~L~~L~L~~c~~l~~----l~~~~~~L~~L~l~  328 (531)
                      ++.|. ..  ..+.+. --++|+.|+|+|..  +....+..+...||+|..|+|++|..+..    ....++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            77666 11  111222 24689999997754  33345667788999999999999976443    33457899999999


Q ss_pred             cccch---hhhcc-cCCCcceeEeecCC
Q 009616          329 NCSGL---NRINV-DAPNLVSFDFEDNP  352 (531)
Q Consensus       329 ~c~~L---~~l~~-~~~nL~sl~~~~~~  352 (531)
                      .|-.+   +.+.+ +.|.|.++...|+.
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEecccc
Confidence            99765   22322 55788888877754

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.75  E-value=8.1e-09  Score=70.91  Aligned_cols=36  Identities=36%  Similarity=0.803  Sum_probs=31.6

Q ss_pred             CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhc
Q 009616           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQT   45 (531)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~   45 (531)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999998753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.73  E-value=5.4e-09  Score=99.47  Aligned_cols=209  Identities=19%  Similarity=0.240  Sum_probs=128.8

Q ss_pred             CCccceEEEEEeeccccCCchhHHHHHHHHHHc--CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCC
Q 009616          102 GFPMQKLRISVSLLEVKESSPLFDKWVELAMEN--GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHC  179 (531)
Q Consensus       102 ~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~--~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~  179 (531)
                      ...+.++.++-.     ..+....+|+....++  .+++.+++..........+|..+-.+               ...+
T Consensus        29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l---------------~~aL   88 (382)
T KOG1909|consen   29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML---------------SKAL   88 (382)
T ss_pred             cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH---------------HHHH
Confidence            345666655533     2367788898877654  67777766533333344555433211               0223


Q ss_pred             CCCCccCEEEeeeEEec---hHhHHHHHhCCcccceEEeeecCCcc-------e----e----eccccccccEEEEEeec
Q 009616          180 ANLQSLKKLSLDEVYVN---DQMVQSLVRECRVLEDLSFFYCFGLK-------R----L----RISEAHKLKSLILRFTY  241 (531)
Q Consensus       180 ~~l~~L~~L~L~~~~~~---~~~l~~~l~~~~~Le~L~L~~c~~~~-------~----l----~~~~l~~L~~L~l~~~~  241 (531)
                      ..+|+|++|+|+.|.+.   ...+..++++|..|++|.|.+|..-.       .    +    .+.+-+.|+++....|.
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            34566666666666663   23466778889999999998885411       0    1    12234788888888887


Q ss_pred             -cc--cce---eeeeCCcccEEEecccc-ccc-----eeeccCCCCccEEEEeCCCCChh---hhhhhhcCCCCCcEEEe
Q 009616          242 -QE--LES---VEIAVPSLQQLELSFSR-VPR-----LLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSI  306 (531)
Q Consensus       242 -~~--l~~---~~~~~~~L~~L~l~~~~-~~~-----~~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~~~~L~~L~L  306 (531)
                       ..  ...   .....|.|+.+.+..|. .+.     ...+..|+.|+.|+|..|.++..   .+...++.+++|+.|.+
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence             11  111   12246889999988887 222     22467889999999988888753   34556778888999999


Q ss_pred             ccccc--------hhHHHhcCcccceeccccc
Q 009616          307 ISLET--------LERIMISSNRLMHLEVYNC  330 (531)
Q Consensus       307 ~~c~~--------l~~l~~~~~~L~~L~l~~c  330 (531)
                      ++|..        ...+....|.|+.|.+.++
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            98843        2333344556666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.64  E-value=1e-08  Score=91.33  Aligned_cols=58  Identities=29%  Similarity=0.302  Sum_probs=22.9

Q ss_pred             CCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhh--hhhhhcCCCCCcEEEecc
Q 009616          251 VPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIIS  308 (531)
Q Consensus       251 ~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~~~~L~~L~L~~  308 (531)
                      +|+|++|++++|.   ...-..+..+++|+.|+|.+|.++...  -..++..+|+|+.||-..
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            5556666665555   111224456666666666666665421  123445566666665443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.57  E-value=1.3e-08  Score=98.26  Aligned_cols=135  Identities=15%  Similarity=0.142  Sum_probs=91.4

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      .+..++|..+.  .+-+.++|..|.++.  +..++.+++|+.|+|++|.++.- -+..+.+.+.|-.|-+.++..+..++
T Consensus        56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            34455565443  355778888888876  45577899999999999887442 24446778888888888877777665


Q ss_pred             ---ccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC
Q 009616          226 ---ISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH  285 (531)
Q Consensus       226 ---~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~  285 (531)
                         +.++.+|+.|.+.-|.  ...+.....+++|..|.+.+|.  ......+..+.+++.+++.-|.
T Consensus       133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence               3366777777776665  2233334467788888887777  2223367777888888876655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.5e-08  Score=99.01  Aligned_cols=152  Identities=20%  Similarity=0.136  Sum_probs=65.5

Q ss_pred             CCCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce---eecccccc
Q 009616          159 SAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR---LRISEAHK  231 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~---l~~~~l~~  231 (531)
                      .|++++.|+|+.|-+..    ...+..||+|+.|+|+.|++....=...-..++.|+.|.|+.|.....   .....+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            34555555555544333    112234555555555555441100000011344455555555543211   00113455


Q ss_pred             ccEEEEEeecccc-ceee-eeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhhhhh-----hhcCCCCC
Q 009616          232 LKSLILRFTYQEL-ESVE-IAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQEFHP-----LISKFPLL  301 (531)
Q Consensus       232 L~~L~l~~~~~~l-~~~~-~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-----~l~~~~~L  301 (531)
                      |+.|++.+|...+ .... .....|++|+|++|.   .......+.+|.|+.|.++.+.++.-..+.     ....++.|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            5555555543011 1110 123345555555555   122234555666666666665554422221     23456777


Q ss_pred             cEEEecccc
Q 009616          302 EDLSIISLE  310 (531)
Q Consensus       302 ~~L~L~~c~  310 (531)
                      ++|++..++
T Consensus       304 ~~L~i~~N~  312 (505)
T KOG3207|consen  304 EYLNISENN  312 (505)
T ss_pred             eeeecccCc
Confidence            777776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.43  E-value=1e-07  Score=90.87  Aligned_cols=152  Identities=17%  Similarity=0.199  Sum_probs=97.9

Q ss_pred             CCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEe---chHh------HHHHHhCCcccceEEeeecCCcce
Q 009616          159 SAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYV---NDQM------VQSLVRECRVLEDLSFFYCFGLKR  223 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~---~~~~------l~~~l~~~~~Le~L~L~~c~~~~~  223 (531)
                      ...+++.++|++|.+..      ...+.+-++|+.-+++..-.   .+..      +...+..||.|++|+|++|..-..
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            45778889999988765      23445567788887775432   1111      223356899999999999865221


Q ss_pred             -e-----eccccccccEEEEEeecccc---------------ceeeeeCCcccEEEecccc-ccc-----eeeccCCCCc
Q 009616          224 -L-----RISEAHKLKSLILRFTYQEL---------------ESVEIAVPSLQQLELSFSR-VPR-----LLDVAECPHL  276 (531)
Q Consensus       224 -l-----~~~~l~~L~~L~l~~~~~~l---------------~~~~~~~~~L~~L~l~~~~-~~~-----~~~~~~~~~L  276 (531)
                       +     -+.++..|+.|.+.+|.-+.               .....+.|.|+.+....|. +..     ...+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence             1     13457889999999886110               0112245788888888887 222     2235667888


Q ss_pred             cEEEEeCCCCChh---hhhhhhcCCCCCcEEEecccc
Q 009616          277 RKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       277 ~~L~L~~~~~~~~---~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +.+.++.|.+...   .+...+..||+|+.|+|.++.
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence            8888887776543   234456678888888888764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.32  E-value=1.9e-07  Score=64.44  Aligned_cols=37  Identities=43%  Similarity=0.862  Sum_probs=31.4

Q ss_pred             CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhcc
Q 009616           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS   46 (531)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~   46 (531)
                      +++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5789999999999999999999999999999997654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.22  E-value=8.4e-07  Score=79.06  Aligned_cols=110  Identities=23%  Similarity=0.215  Sum_probs=34.3

Q ss_pred             CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEE
Q 009616          178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL  257 (531)
Q Consensus       178 ~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L  257 (531)
                      ...+..++++|+|++|.+..  +..+-..+..|+.|++++|....--.+.                      .++.|++|
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----------------------~L~~L~~L   69 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLEGLP----------------------GLPRLKTL   69 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--TT--------------------------TT--EE
T ss_pred             cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccccCcc----------------------Chhhhhhc
Confidence            33445566777777776632  2221123455666666555432111111                      35667777


Q ss_pred             Eecccc-ccceeec-cCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          258 ELSFSR-VPRLLDV-AECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       258 ~l~~~~-~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      ++++|. ......+ ..+|+|+.|++++|.+.+-.-...++.+|+|+.|+|.+++-
T Consensus        70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            777776 3332233 46899999999999987632234567899999999999763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.21  E-value=1.6e-07  Score=87.64  Aligned_cols=127  Identities=18%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEec
Q 009616          182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS  260 (531)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~  260 (531)
                      ...|++|+|++|.++.  +.....-.|.++.|++++|.....-.+..+++|+.||+++|. ..+..+...+.|++.|.++
T Consensus       283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4578888999887743  444456678999999999877555455667899999999887 4455555567888999999


Q ss_pred             cccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          261 FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       261 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +|.......++.+-+|..|++++|++..-.-..-++++|.||.|.|.+++
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            88743344567778889999999988764444557889999999888865

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.21  E-value=1.4e-06  Score=57.68  Aligned_cols=34  Identities=41%  Similarity=0.683  Sum_probs=31.7

Q ss_pred             CChHHHHHHhcCCChHHHHHHhhhhhhhhhhhcc
Q 009616           13 LPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS   46 (531)
Q Consensus        13 LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~   46 (531)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.06  E-value=1.6e-05  Score=88.34  Aligned_cols=217  Identities=19%  Similarity=0.118  Sum_probs=126.4

Q ss_pred             hHHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCC
Q 009616           83 SLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKL  162 (531)
Q Consensus        83 ~~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~  162 (531)
                      ...-+...|++.|...........+++++       ....++.-|+......+-+..-+.   ........|... +...
T Consensus       456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~~iv~---~~~~~~~~~~~~-~~~~  524 (889)
T KOG4658|consen  456 GYDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEENQIVS---DGVGLSEIPQVK-SWNS  524 (889)
T ss_pred             hHHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccceEEE---CCcCcccccccc-chhh
Confidence            33445566666663221111233333333       224566777765544444442222   112333344332 3356


Q ss_pred             ccEEEecCCcCCCCcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEe
Q 009616          163 LTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRF  239 (531)
Q Consensus       163 L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~  239 (531)
                      .+...+.++.+...+....++.|++|-+.+|.. -.......+..+|.|..|+|++|..++.++  |+++-+||.|+++.
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            677777777654433444567888888888752 122233446778999999999888877765  56778889998888


Q ss_pred             ec-cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCCh-hhhhhhhcCCCCCcEEEecccc
Q 009616          240 TY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       240 ~~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +. ..+|.-..++..|.+|++..+.  ...+.....+++|++|.+....... .....-+.++.+|+.|....+.
T Consensus       605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            76 4445545567788888888776  2333445558899999885554221 2222334566667766665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=1.1e-06  Score=95.14  Aligned_cols=148  Identities=19%  Similarity=0.179  Sum_probs=100.5

Q ss_pred             CCccEEEecCCcCCC---CcCC-CCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          161 KLLTSLKLFGCKLEQ---PSHC-ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~---~~~~-~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      .+|++|+++|...-.   +... .-||+|++|.+.+..+....+..+..++|+|..|+++++....--.++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            567777777753322   2222 348999999998888855567888888999999999887654434456677888777


Q ss_pred             EEeec-cccce--eeeeCCcccEEEecccc-ccce-------eeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616          237 LRFTY-QELES--VEIAVPSLQQLELSFSR-VPRL-------LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS  305 (531)
Q Consensus       237 l~~~~-~~l~~--~~~~~~~L~~L~l~~~~-~~~~-------~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~  305 (531)
                      +.+-. .....  -.+++.+|+.|+++... ...+       ..-..+|+|+.||.+++.++++.+..++..-|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            76543 11111  12367888888888766 2111       11235889999999999888888888877777777766


Q ss_pred             ecc
Q 009616          306 IIS  308 (531)
Q Consensus       306 L~~  308 (531)
                      +-+
T Consensus       282 ~~~  284 (699)
T KOG3665|consen  282 ALD  284 (699)
T ss_pred             hhh
Confidence            544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.91  E-value=1e-06  Score=91.58  Aligned_cols=206  Identities=18%  Similarity=0.130  Sum_probs=124.5

Q ss_pred             ccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcC
Q 009616           99 CELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSH  178 (531)
Q Consensus        99 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~  178 (531)
                      ...+++++.|+...........-......++.  ....+.|.+--.  ......=|-+++.+++|++|.|.+|.+....+
T Consensus        51 g~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~--lqkt~~lkl~~~--pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~G  126 (1096)
T KOG1859|consen   51 GLSGAPVDYFRAYVSDNADSRVLEQLQRILDF--LQKTKVLKLLPS--PARDPTEPISIFPFRSLRVLELRGCDLSTAKG  126 (1096)
T ss_pred             ccCCCCCceeEEecCCcccchHHHHHHHHHHH--Hhhheeeeeccc--CCCCCCCCceeccccceeeEEecCcchhhhhh
Confidence            34578888887665432211111122222222  234555554431  22222228889999999999999997754111


Q ss_pred             CCC---------------------------------CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          179 CAN---------------------------------LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       179 ~~~---------------------------------l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      +..                                 ...|.+-+++.|.+.  .+...+.-.|.||.|+|++|.....-.
T Consensus       127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~~  204 (1096)
T KOG1859|consen  127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVDN  204 (1096)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhHH
Confidence            100                                 123444444444441  122234446888999999988766556


Q ss_pred             ccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          226 ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       226 ~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                      +..|++|+.|||++|. ..++.+....-.|+.|.+.+|.......+.++.+|+.||+++|-+.+..-...+..+..|..|
T Consensus       205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             HHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            6678899999999886 344444332234888888888743344677888899999988887764434445566778888


Q ss_pred             Eecccc
Q 009616          305 SIISLE  310 (531)
Q Consensus       305 ~L~~c~  310 (531)
                      .|.+++
T Consensus       285 ~LeGNP  290 (1096)
T KOG1859|consen  285 WLEGNP  290 (1096)
T ss_pred             hhcCCc
Confidence            888764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.88  E-value=1.1e-06  Score=85.09  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             eCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          250 AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       250 ~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      .+|+|+.|++++|.  ...+.+|.+...++.|+|..|.+. ..-..++.++..|+.|+|.++..
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCee
Confidence            46889999999998  445667888889999999888876 23345677888899999988653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.88  E-value=6.9e-06  Score=84.47  Aligned_cols=144  Identities=22%  Similarity=0.244  Sum_probs=59.0

Q ss_pred             CCccEEEecCCcCCC-CcCCCCCC-ccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecc-ccccccEEEE
Q 009616          161 KLLTSLKLFGCKLEQ-PSHCANLQ-SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS-EAHKLKSLIL  237 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~-~~~~~~l~-~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~-~l~~L~~L~l  237 (531)
                      +.++.|++.++.+.. ++....++ +|+.|++++|.+..  ++.-+..+++|+.|++++|......... ..+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            445555555554444 33333332 55555555554421  2122444555555555554432221111 2345555555


Q ss_pred             Eeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecc
Q 009616          238 RFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS  308 (531)
Q Consensus       238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (531)
                      ++|. ..++........|++|.+++|. ...+..+..+.++..+.+.++.+..  +...++++++++.|++++
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSN  264 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccc
Confidence            5543 1121111122225555555542 3333334444444444444444332  122333444455554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.82  E-value=6.3e-06  Score=77.24  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=51.6

Q ss_pred             HhCCcccceEEeeecCC--cceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-----ccceeeccCCCCc
Q 009616          204 VRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-----VPRLLDVAECPHL  276 (531)
Q Consensus       204 l~~~~~Le~L~L~~c~~--~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~L  276 (531)
                      ++.+.+|..+.++.|..  +..+.... |.|..+.+.+.........  .|.=...+..+..     ++....+.....|
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~~~~~~k-ptl~t~~v~~s~~~~~~~l--~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIVDIELLK-PTLQTICVHNTTIQDVPSL--LPETILADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             hHHhhhhheeeeeccchhheeceeecC-chhheeeeecccccccccc--cchhhhcCccCCCCCccCCceEEecchHhhh
Confidence            34566667777776653  22333333 6677776665431111111  1111111222111     3334445556677


Q ss_pred             cEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          277 RKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       277 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +.++|++|.++.  +.+...-.|.++.|+++.+.
T Consensus       287 telDLS~N~I~~--iDESvKL~Pkir~L~lS~N~  318 (490)
T KOG1259|consen  287 TELDLSGNLITQ--IDESVKLAPKLRRLILSQNR  318 (490)
T ss_pred             hhccccccchhh--hhhhhhhccceeEEeccccc
Confidence            777777777763  23334456777777777754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.71  E-value=3.3e-05  Score=56.17  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             CcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          252 PSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       252 ~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      |+|++|++++|. ... +..|.++++|++|++++|.++ ...+..+.++++|+.|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            567777777776 323 346788888888888888887 4455677888888888888764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.70  E-value=1.5e-05  Score=57.98  Aligned_cols=58  Identities=24%  Similarity=0.241  Sum_probs=36.2

Q ss_pred             CCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecC
Q 009616          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~  219 (531)
                      ++|++|++++|++..  +..+.++++|++|++++|.+.. .-+..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCc
Confidence            356777777776665  3455667777777777776632 122345667777777776664

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.70  E-value=1.4e-05  Score=84.31  Aligned_cols=128  Identities=25%  Similarity=0.264  Sum_probs=82.0

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCC-cCCC------CcCCCCCCccCEEEeeeEE-echHhHHHHHh
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVY-VNDQMVQSLVR  205 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~  205 (531)
                      ++++++.+..... .....+-.....++.|+.|++++| ....      ......+++|+.|+++++. +++..+..+..
T Consensus       188 ~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4677776654211 111112234456888999999873 2221      2334557889999999888 57777888777


Q ss_pred             CCcccceEEeeecCCcceeec----cccccccEEEEEeec----cccceeeeeCCcccEEEeccc
Q 009616          206 ECRVLEDLSFFYCFGLKRLRI----SEAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFS  262 (531)
Q Consensus       206 ~~~~Le~L~L~~c~~~~~l~~----~~l~~L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~  262 (531)
                      .|++|++|.+.+|..+....+    .+|++|++|++++|.    ..+..+..++++|+.|.+...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            899999999888886544222    257889999999887    123333445777666654433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.68  E-value=1.7e-05  Score=81.51  Aligned_cols=168  Identities=23%  Similarity=0.199  Sum_probs=122.0

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCC-CccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAK-LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      ..+..+++..    .....+|......+ +|+.|++++|.+.. +.....+++|+.|+++.|.+.+  ++...+..+.|+
T Consensus       116 ~~l~~L~l~~----n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDN----NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLN  189 (394)
T ss_pred             cceeEEecCC----cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhh
Confidence            3566776654    45677887777774 89999999998887 5678889999999999998743  455455789999


Q ss_pred             eEEeeecCCcceeec-cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616          212 DLSFFYCFGLKRLRI-SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (531)
Q Consensus       212 ~L~L~~c~~~~~l~~-~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~  288 (531)
                      .|++++|....--.. .....|++|.+++|. ........+..++..+.+.++. ...+..++.+++++.|+++++.++.
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence            999988865332221 233459999999884 2333334467777888877777 3336678888899999999998885


Q ss_pred             hhhhhhhcCCCCCcEEEecccc
Q 009616          289 QEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       289 ~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      -  .. +....+|+.|++++..
T Consensus       270 i--~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         270 I--SS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             c--cc-ccccCccCEEeccCcc
Confidence            3  22 6778899999998854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.65  E-value=8.8e-06  Score=90.45  Aligned_cols=198  Identities=23%  Similarity=0.235  Sum_probs=103.6

Q ss_pred             ccCCcccc-CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee-c
Q 009616          151 NALPQTIF-SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-I  226 (531)
Q Consensus       151 ~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~-~  226 (531)
                      ..++..++ .++.|++|||++|.-.+  |..++.+-+||+|+|++..+.  .+|.-+.++..|.+|++..+..+..++ +
T Consensus       560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence            34444433 47888888888874333  777888888888888887764  366667788888888888776654432 2


Q ss_pred             c-ccccccEEEEEeec-cccceee---eeCCcccEEEeccccccceeeccCCCCcc----EEEEeCCCCChhhhhhhhcC
Q 009616          227 S-EAHKLKSLILRFTY-QELESVE---IAVPSLQQLELSFSRVPRLLDVAECPHLR----KLVLFLPHFNDQEFHPLISK  297 (531)
Q Consensus       227 ~-~l~~L~~L~l~~~~-~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~~~~~~l~~  297 (531)
                      . .+++|++|.+.... ..-....   .++.+|+.|............+..++.|.    .+.+.++.  .......+..
T Consensus       638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~  715 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGS  715 (889)
T ss_pred             hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc--cceeeccccc
Confidence            2 36788888876543 0111111   13334444443322211111222222222    22221111  1122233455


Q ss_pred             CCCCcEEEeccccchhHHHhc---------Ccccceeccccccchhhhc--ccCCCcceeEeecCC
Q 009616          298 FPLLEDLSIISLETLERIMIS---------SNRLMHLEVYNCSGLNRIN--VDAPNLVSFDFEDNP  352 (531)
Q Consensus       298 ~~~L~~L~L~~c~~l~~l~~~---------~~~L~~L~l~~c~~L~~l~--~~~~nL~sl~~~~~~  352 (531)
                      +.+|+.|.+.+|...+.....         ++++..+.+.+|..++.+.  .-+|+|+++.+.+..
T Consensus       716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence            667777777776543221111         2344444455555554433  456677766665443

>PLN03150 hypothetical protein; Provisional

Probab=97.58  E-value=7.1e-05  Score=81.22  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=79.4

Q ss_pred             CccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEE
Q 009616          162 LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLIL  237 (531)
Q Consensus       162 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l  237 (531)
                      .++.|+|++|.+.+  |..++.+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|...+.++  +.++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37899999999987  7788899999999999998855 366668999999999999998766543  557899999999


Q ss_pred             Eeec--cccceeee-eCCcccEEEecccc
Q 009616          238 RFTY--QELESVEI-AVPSLQQLELSFSR  263 (531)
Q Consensus       238 ~~~~--~~l~~~~~-~~~~L~~L~l~~~~  263 (531)
                      ++|.  +.++.... ...++..+++.+|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            9987  33333222 23466788888886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.43  E-value=4.4e-06  Score=84.72  Aligned_cols=131  Identities=20%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             CCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce-eeccccc
Q 009616          153 LPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR-LRISEAH  230 (531)
Q Consensus       153 lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~-l~~~~l~  230 (531)
                      +|..+.++..|++|+|+.|++.. |..+..|| |+.|-+++|+++.  ++.-++..+.|.+|+.+.|....- -.+.++.
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            44444455555555555554444 33333332 4555555554421  222233444455555544433221 1122344


Q ss_pred             cccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616          231 KLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       231 ~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      +|+.|.+..|. ..++.-.. .-.|..|+++.|. ..+|+.|..++.|++|.|.+|.++
T Consensus       190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            45555554443 22221111 2235555555555 445555555555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=97.42  E-value=0.00016  Score=78.52  Aligned_cols=80  Identities=16%  Similarity=0.042  Sum_probs=59.0

Q ss_pred             cccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616          231 KLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (531)
Q Consensus       231 ~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L  306 (531)
                      .++.|++++|.  +.++.....+++|+.|++++|.  +..|..++.+++|+.|+|++|.+++. ++..++++++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence            36777777776  3344444467888888888887  56777788888888888888888854 4555778888888888


Q ss_pred             ccccc
Q 009616          307 ISLET  311 (531)
Q Consensus       307 ~~c~~  311 (531)
                      ++|..
T Consensus       498 s~N~l  502 (623)
T PLN03150        498 NGNSL  502 (623)
T ss_pred             cCCcc
Confidence            88754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.00016  Score=68.11  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=39.5

Q ss_pred             cccCCCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEec-hHhHHHHHhCCcccceEEeeecCC
Q 009616          156 TIFSAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVN-DQMVQSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~-~~~l~~~l~~~~~Le~L~L~~c~~  220 (531)
                      .++..+-++.|.+.+|.+..    ......++.++.|+|.+|.++ -..+..++.++|.|+.|+|+.|+.
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL  109 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence            34444455666677776643    111234667777777777773 345666667777777777766654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.23  E-value=0.00017  Score=78.29  Aligned_cols=125  Identities=18%  Similarity=0.092  Sum_probs=61.1

Q ss_pred             CccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCccee--e-ccccccccEEEEEeeccccceee--eeCCcccE
Q 009616          183 QSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRL--R-ISEAHKLKSLILRFTYQELESVE--IAVPSLQQ  256 (531)
Q Consensus       183 ~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~-~~~l~~L~~L~l~~~~~~l~~~~--~~~~~L~~  256 (531)
                      .+|++|++++... ....+..+-..+|+|+.|.+.+-.....-  . ..++|+|..|||+++.  +..+.  .++.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN--ISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC--ccCcHHHhccccHHH
Confidence            4667777766554 33334444445677777776654332220  1 1245666666666664  22211  24556666


Q ss_pred             EEecccc---ccceeeccCCCCccEEEEeCCCCChhh--hh---hhhcCCCCCcEEEeccc
Q 009616          257 LELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FH---PLISKFPLLEDLSIISL  309 (531)
Q Consensus       257 L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~---~~l~~~~~L~~L~L~~c  309 (531)
                      |.+.+-.   ......+-++++|+.||++........  +.   +....+|+|+.|+.++.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            6555443   112223445666666666544433211  11   11224566666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.22  E-value=2.2e-05  Score=79.76  Aligned_cols=157  Identities=18%  Similarity=0.080  Sum_probs=99.2

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCc-ceeec
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGL-KRLRI  226 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~-~~l~~  226 (531)
                      ....+|..+..|..|+.|.|..|.+.. |..+.++..|++|+|+.|++..  ++.-+..|| |+.|.+++|... ....+
T Consensus        86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~i  162 (722)
T KOG0532|consen   86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEI  162 (722)
T ss_pred             ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCccc
Confidence            345666666666777777777776655 6667777777777777776632  232234444 677777666542 22334


Q ss_pred             cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          227 SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       227 ~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                      +..++|..|+++.|. ..++.-...+.+|+.|.+..|. ...|..+. .=.|..||+++|+++.  ++--+.++..|++|
T Consensus       163 g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVL  239 (722)
T ss_pred             ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheee
Confidence            456777777777776 4444444566677777777776 55555555 3347777777777763  34445677777777


Q ss_pred             Eeccccc
Q 009616          305 SIISLET  311 (531)
Q Consensus       305 ~L~~c~~  311 (531)
                      .|.+++.
T Consensus       240 ~LenNPL  246 (722)
T KOG0532|consen  240 QLENNPL  246 (722)
T ss_pred             eeccCCC
Confidence            7777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0002  Score=67.35  Aligned_cols=179  Identities=17%  Similarity=0.088  Sum_probs=117.1

Q ss_pred             cCCcEEEEeeecCCCccc-cCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVN-ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .+|++++|..  +....+ ++-+-+-+++.|+.|+|+.|.+..  ........+|++|.|.+..++-......+...|.+
T Consensus        71 ~~v~elDL~~--N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTG--NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhccc--chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            3799999875  221111 222334467999999999998875  11114567999999998877655677788899999


Q ss_pred             ceEEeeecCC----cceeeccc-cccccEEEEEeec----cccceeeeeCCcccEEEecccc---ccceeeccCCCCccE
Q 009616          211 EDLSFFYCFG----LKRLRISE-AHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRK  278 (531)
Q Consensus       211 e~L~L~~c~~----~~~l~~~~-l~~L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~  278 (531)
                      ++|.++.|..    +..-.+.. -+.++.|....|.    .....+..-.|++.++-++.|.   ......+..+|.+-.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999998843    11111211 1567777777765    1122233346888888888885   222234556777778


Q ss_pred             EEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhH
Q 009616          279 LVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (531)
Q Consensus       279 L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~  314 (531)
                      |.|+.+++..=.-...+.+++.|..|.+...+....
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            888888876533334467889999998888665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.04  E-value=0.00044  Score=46.30  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             CCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEe
Q 009616          161 KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV  195 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~  195 (531)
                      ++|++|++++|.+.. ++.+++|++|++|++++|.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            356777777777766 44466677777777776665

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.0001  Score=68.36  Aligned_cols=57  Identities=30%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             CcccceEEeeecCCcceeeccccccccEEEEEeec----cccceeeeeCCcccEEEecccc
Q 009616          207 CRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY----QELESVEIAVPSLQQLELSFSR  263 (531)
Q Consensus       207 ~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~----~~l~~~~~~~~~L~~L~l~~~~  263 (531)
                      +..|+.|.+.++..........+|+|+.|.++.|+    +++..+...+|+|+++.+++|.
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            33444444444433333333345666666666663    3444444455666666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.83  E-value=0.00057  Score=72.05  Aligned_cols=63  Identities=22%  Similarity=0.311  Sum_probs=39.9

Q ss_pred             eCCcccEEEecccccc----ceeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCcEEEeccccch
Q 009616          250 AVPSLQQLELSFSRVP----RLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLETL  312 (531)
Q Consensus       250 ~~~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~~L~L~~c~~l  312 (531)
                      .+++|+.|+++.+...    .......|++|+.|.+.++. +++..+..+...|++|+.|+|++|..+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3455556655555411    11111237777777766555 677778888888888888888888664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.81  E-value=0.0018  Score=60.44  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=50.3

Q ss_pred             hhHHHHHHHH-HHcCCcEEEEeeecCCCc---cccCCccccCCCCccEEEecCCcCC---C---------CcCCCCCCcc
Q 009616          122 PLFDKWVELA-MENGVKELDFEVITDKNS---VNALPQTIFSAKLLTSLKLFGCKLE---Q---------PSHCANLQSL  185 (531)
Q Consensus       122 ~~~~~wl~~~-~~~~l~~L~L~~~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~l~---~---------~~~~~~l~~L  185 (531)
                      .++...+... ....+.+++|++  +...   ...+...+.+-++|+..+++.--..   .         .+.+.+||+|
T Consensus        17 eDvk~v~eel~~~d~~~evdLSG--NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l   94 (388)
T COG5238          17 EDVKGVVEELEMMDELVEVDLSG--NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRL   94 (388)
T ss_pred             chhhHHHHHHHhhcceeEEeccC--CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence            3444444433 234677777775  2110   0112223334466777666653111   1         1233557777


Q ss_pred             CEEEeeeEEech---HhHHHHHhCCcccceEEeeecC
Q 009616          186 KKLSLDEVYVND---QMVQSLVRECRVLEDLSFFYCF  219 (531)
Q Consensus       186 ~~L~L~~~~~~~---~~l~~~l~~~~~Le~L~L~~c~  219 (531)
                      +..+|+.|.|+.   ..+..++++...|++|.+++|.
T Consensus        95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             eeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            777777776632   3344556777777777776664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.75  E-value=0.0008  Score=62.66  Aligned_cols=176  Identities=12%  Similarity=0.070  Sum_probs=100.1

Q ss_pred             CchhHHHHHHHHHH--cCCcEEEEeeecCCCccccCCc-------cccCCCCccEEEecCCcCCC--CcC----CCCCCc
Q 009616          120 SSPLFDKWVELAME--NGVKELDFEVITDKNSVNALPQ-------TIFSAKLLTSLKLFGCKLEQ--PSH----CANLQS  184 (531)
Q Consensus       120 ~~~~~~~wl~~~~~--~~l~~L~L~~~~~~~~~~~lp~-------~l~~~~~L~~L~L~~~~l~~--~~~----~~~l~~  184 (531)
                      .+.....|++..++  ++++..+++..........+|.       .+..|+.|+..+||.|.|..  |+.    ++.-+.
T Consensus        42 igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~  121 (388)
T COG5238          42 IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTD  121 (388)
T ss_pred             ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCC
Confidence            36777889887665  3566655544222222333443       34689999999999998876  333    356789


Q ss_pred             cCEEEeeeEEec---hHhHHHH---------HhCCcccceEEeeecCCccee------eccccccccEEEEEeeccccce
Q 009616          185 LKKLSLDEVYVN---DQMVQSL---------VRECRVLEDLSFFYCFGLKRL------RISEAHKLKSLILRFTYQELES  246 (531)
Q Consensus       185 L~~L~L~~~~~~---~~~l~~~---------l~~~~~Le~L~L~~c~~~~~l------~~~~l~~L~~L~l~~~~~~l~~  246 (531)
                      |++|.|++|.+.   +.-+...         ..+-|.|+......|+....-      -+.+-.+|+.+.+..|.  +.+
T Consensus       122 l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irp  199 (388)
T COG5238         122 LVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG--IRP  199 (388)
T ss_pred             ceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC--cCc
Confidence            999999999762   2223211         234566666666665442210      01111345555555553  110


Q ss_pred             eeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChh---hhhhhhcCCCCCcEEEecccc
Q 009616          247 VEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ---EFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      -.+     +.|        ....+..+.+|+.|+|..|.+|..   .+...+...+.|+.|.+.+|-
T Consensus       200 egv-----~~L--------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         200 EGV-----TML--------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             chh-----HHH--------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            000     000        011234567788888887777642   334455667778888888873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.65  E-value=0.00017  Score=74.55  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             cccCCCCccEEEecCCcCCCCcC-CCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccE
Q 009616          156 TIFSAKLLTSLKLFGCKLEQPSH-CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKS  234 (531)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~  234 (531)
                      .+..+++|+.|++.+|.+..... ...+++|++|++++|.++.  +.. +..++.|+.|++.+|.....-....++.|+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEG-LSTLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccc-hhhccchhhheeccCcchhccCCccchhhhc
Confidence            35567888888888888877444 6778888888888888732  121 4556668888888887654444444678888


Q ss_pred             EEEEeec-ccccee-eeeCCcccEEEecccc
Q 009616          235 LILRFTY-QELESV-EIAVPSLQQLELSFSR  263 (531)
Q Consensus       235 L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~  263 (531)
                      +++++|. ..+... ...+++|+.+.+.+|.
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            8888876 222221 2456777777777776

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.63  E-value=0.005  Score=62.05  Aligned_cols=11  Identities=27%  Similarity=0.114  Sum_probs=5.7

Q ss_pred             CccEEEEeCCC
Q 009616          275 HLRKLVLFLPH  285 (531)
Q Consensus       275 ~L~~L~L~~~~  285 (531)
                      +|+.|++.++.
T Consensus       157 SLk~L~Is~c~  167 (426)
T PRK15386        157 SLKTLSLTGCS  167 (426)
T ss_pred             cccEEEecCCC
Confidence            45555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.62  E-value=0.0019  Score=57.62  Aligned_cols=61  Identities=25%  Similarity=0.363  Sum_probs=37.9

Q ss_pred             eCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCCChhh--hhhhhcCCCCCcEEEecccc
Q 009616          250 AVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       250 ~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~~~~L~~L~L~~c~  310 (531)
                      .+|+|..|.|.+|.   ......+..||.|++|.+-+|.++...  -..++..+|+|+.|+.....
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            35666666666665   122234567777888877777766421  12356677888888887653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.00029  Score=65.32  Aligned_cols=106  Identities=25%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCc--cee-ecccccccc
Q 009616          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGL--KRL-RISEAHKLK  233 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~--~~l-~~~~l~~L~  233 (531)
                      -....|+.|++.++.++....+-.+|+||+|.++.|.+ ....+..++..||+|++|++++|..-  ..+ +...+.+|.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            34577888888888877655566788999999999844 22345666678899999999998652  222 233467788


Q ss_pred             EEEEEeec-cccc----eeeeeCCcccEEEecccc
Q 009616          234 SLILRFTY-QELE----SVEIAVPSLQQLELSFSR  263 (531)
Q Consensus       234 ~L~l~~~~-~~l~----~~~~~~~~L~~L~l~~~~  263 (531)
                      .|++.+|. ..+.    .+..-+|+|++|+-....
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            88888876 1111    122235666666544443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.59  E-value=4.4e-05  Score=79.76  Aligned_cols=119  Identities=21%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC--cceeeccccccccEEEEEe
Q 009616          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG--LKRLRISEAHKLKSLILRF  239 (531)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~--~~~l~~~~l~~L~~L~l~~  239 (531)
                      |.+-+.++|.+.. -..+.-++.|+.|+|++|++...  . .+..|+.|++|+|++|..  +..+...+|. |..|.+++
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            3444444444433 22333456666666666666332  1 245566666666666644  2223333433 66666666


Q ss_pred             ec-cccceeeeeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCCC
Q 009616          240 TY-QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       240 ~~-~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |. ..+..+ -++.+|+.|++++|-   ......++.+..|+.|.|.+|.+
T Consensus       242 N~l~tL~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTLRGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhhhhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            64 111111 145556666666554   11222344455555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.55  E-value=0.00031  Score=72.65  Aligned_cols=125  Identities=23%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             CCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEE
Q 009616          160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (531)
Q Consensus       160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~  238 (531)
                      +..++.+.+..+.+.. ......+.+|+.|++..|.+..  +...+.++++|++|++++|.......+..++.|+.|++.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhheec
Confidence            3445555555554443 2335566777777777766622  222245667777777777665444445555667777777


Q ss_pred             eec-cccceeeeeCCcccEEEeccccccceee--ccCCCCccEEEEeCCCCC
Q 009616          239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLD--VAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       239 ~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~  287 (531)
                      +|. ..+.... .+++|+.+++++|....-..  ...+.+++.+.+.+|.+.
T Consensus       149 ~N~i~~~~~~~-~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  149 GNLISDISGLE-SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cCcchhccCCc-cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            765 1111111 25667777777766111111  356666777777666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.54  E-value=0.0029  Score=42.34  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=15.2

Q ss_pred             cccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616          253 SLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       253 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      +|++|++++|. ...+..++++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            34444444444 223323444444444444444444

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.00021  Score=66.58  Aligned_cols=75  Identities=27%  Similarity=0.223  Sum_probs=35.9

Q ss_pred             CCcccceEEeeecCCcceeeccccccccEEEEEeec-cccceee--eeCCcccEEEecccc--ccce-----eeccCCCC
Q 009616          206 ECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE--IAVPSLQQLELSFSR--VPRL-----LDVAECPH  275 (531)
Q Consensus       206 ~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~--~~~~~L~~L~l~~~~--~~~~-----~~~~~~~~  275 (531)
                      .+|.||.|.|+-|....--++..|.+|++|.+..|. ..+.++.  .++|+|+.|+|..|.  +..+     ..+.-+|+
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn  118 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN  118 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence            344444444444333222223334444444444443 2222222  267778888877766  2221     12445777


Q ss_pred             ccEEE
Q 009616          276 LRKLV  280 (531)
Q Consensus       276 L~~L~  280 (531)
                      |++|+
T Consensus       119 LkKLD  123 (388)
T KOG2123|consen  119 LKKLD  123 (388)
T ss_pred             chhcc
Confidence            77775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.08  E-value=0.011  Score=52.98  Aligned_cols=58  Identities=16%  Similarity=0.071  Sum_probs=30.4

Q ss_pred             CccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC
Q 009616          162 LLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       162 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~  220 (531)
                      +...++|++|.+.....+..++.|.+|.|.+|+++.- -+.+-.-+|+|..|.|.+|+.
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcch
Confidence            4455666666554333444566677777776666321 011222345666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.95  E-value=0.017  Score=58.25  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=52.3

Q ss_pred             CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecc
Q 009616          182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSF  261 (531)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~  261 (531)
                      ++++++|++++|.+..  ++.   --++|++|.+.+|..+..++-.-.++|+.|++++|. .+..+   .++|+.|.+.+
T Consensus        51 ~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L~~  121 (426)
T PRK15386         51 ARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEIKG  121 (426)
T ss_pred             hcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEeCC
Confidence            5666666666664421  221   112466666666666544331111466666666663 22211   23456666554


Q ss_pred             ccccceeeccCCC-CccEEEEeCCC-CChhhhhhhhcCC-CCCcEEEeccccch
Q 009616          262 SRVPRLLDVAECP-HLRKLVLFLPH-FNDQEFHPLISKF-PLLEDLSIISLETL  312 (531)
Q Consensus       262 ~~~~~~~~~~~~~-~L~~L~L~~~~-~~~~~~~~~l~~~-~~L~~L~L~~c~~l  312 (531)
                      +...   .++.+| +|+.|.+.+++ ......+.   .+ ++|+.|.+++|..+
T Consensus       122 n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        122 SATD---SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI  169 (426)
T ss_pred             CCCc---ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc
Confidence            3311   123332 45555553222 11000111   12 35666777666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=0.0013  Score=61.40  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             ccccEEEEEeeccccceee--eeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          230 HKLKSLILRFTYQELESVE--IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       230 ~~L~~L~l~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      .+.+.|+.++|.  +..+.  ..+|.|+.|.|+-|.......+..|++|++|+|..|.|.+-.-...+.++|+|+.|-|.
T Consensus        19 ~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCG--LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCC--ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            344555555552  33332  25677777777777644455677788888888887777653334456788888888777


Q ss_pred             ccc
Q 009616          308 SLE  310 (531)
Q Consensus       308 ~c~  310 (531)
                      .++
T Consensus        97 ENP   99 (388)
T KOG2123|consen   97 ENP   99 (388)
T ss_pred             cCC
Confidence            653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.61  E-value=0.018  Score=55.12  Aligned_cols=37  Identities=24%  Similarity=0.605  Sum_probs=35.0

Q ss_pred             CccCCCCC----hHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            7 ADHISDLP----TFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         7 ~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      .|.|+.||    |+|-..|||+|+..+++.+-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            58899999    99999999999999999999999999974

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=0.008  Score=53.83  Aligned_cols=89  Identities=20%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEe-chHhHHHHHhCCcccceEEeeecCCcceee--
Q 009616          151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV-NDQMVQSLVRECRVLEDLSFFYCFGLKRLR--  225 (531)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~-~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--  225 (531)
                      +.+|..-..-..++.++-+++.+..  ...+.++++++.|.+.+|.. ++..+..+-.-.|+||.|+|++|+.+++-.  
T Consensus        91 ~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~  170 (221)
T KOG3864|consen   91 FSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA  170 (221)
T ss_pred             ecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH
Confidence            3555443333457777777776543  45567788888999988876 777777776778999999999998876532  


Q ss_pred             -ccccccccEEEEEe
Q 009616          226 -ISEAHKLKSLILRF  239 (531)
Q Consensus       226 -~~~l~~L~~L~l~~  239 (531)
                       +..+++|+.|.+..
T Consensus       171 ~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  171 CLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHhhhhHHHHhcC
Confidence             33457777777663

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.74  E-value=0.097  Score=30.45  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=21.7

Q ss_pred             ccCEEEeeeEEe-chHhHHHHHhCCc
Q 009616          184 SLKKLSLDEVYV-NDQMVQSLVRECR  208 (531)
Q Consensus       184 ~L~~L~L~~~~~-~~~~l~~~l~~~~  208 (531)
                      +||+|+|..+.+ ++..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 5557999999997

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.56  E-value=0.079  Score=44.56  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=13.5

Q ss_pred             eccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          269 DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       269 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      .|..+++|+.+.+..+ ++ ......+.++ +|+.+.+.
T Consensus        76 ~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             cccccccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence            3445566666665332 22 1222334444 55555544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.92  E-value=0.078  Score=52.96  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=33.4

Q ss_pred             cCCCCChHHHHHHhcCCC-hHHHHHHhhhhhhhhhhhcc
Q 009616            9 HISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKFQTS   46 (531)
Q Consensus         9 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr~lw~~   46 (531)
                      ..++||+|+|..|..+|+ .-|++|.+.|||.||..-..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            367999999999999997 67999999999999986443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.37  E-value=0.069  Score=51.00  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             ccCCCCChHHHHHHhcC-----CChHHHHHHhhhhhhhhhh
Q 009616            8 DHISDLPTFIIHHIMSF-----LSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         8 D~is~LPd~iL~~Ils~-----L~~~d~~r~s~vSkrWr~l   43 (531)
                      +.|+.||||||..||..     |+.+++.++|+|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            34689999999999864     5679999999999999853

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=91.48  E-value=0.065  Score=37.06  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             CCccccccccCCCcccccc----------cccccCCCCeEEEee
Q 009616          490 CQIKCWRHYLKGINTESFD----------PLQESSEGDLWLRLD  523 (531)
Q Consensus       490 ~~~~c~~~~Lk~v~i~~~~----------~~~e~~~~~~~~~~~  523 (531)
                      ...+|..++||.|++.||.          .|.+||..++-+++.
T Consensus         7 ~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    7 SVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            4579999999999999999          888999999888764

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.33  E-value=0.17  Score=42.47  Aligned_cols=56  Identities=18%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             cCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEee
Q 009616          158 FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFF  216 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~  216 (531)
                      ..|++|+.+.+... +..  ...+.++++|+.+.+..+ +.. .-...+.+|+.|+.+.+.
T Consensus         9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEET
T ss_pred             hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccc-cceeeeeccccccccccc
Confidence            35567777776642 222  334555666666666543 210 001124556566666663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.53  E-value=0.025  Score=47.55  Aligned_cols=78  Identities=21%  Similarity=0.180  Sum_probs=51.4

Q ss_pred             ccccEEEEEeec--cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616          230 HKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (531)
Q Consensus       230 ~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L  306 (531)
                      ..|+..++++|.  ...+.+....|.++.|++++|. ...|..+..++.|+.|+++.|.+...  ++.+..+.+|-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHhcC
Confidence            556666677665  2233445566778888888888 66777788888888888888887642  333333555666655


Q ss_pred             ccc
Q 009616          307 ISL  309 (531)
Q Consensus       307 ~~c  309 (531)
                      .++
T Consensus       131 ~~n  133 (177)
T KOG4579|consen  131 PEN  133 (177)
T ss_pred             CCC
Confidence            543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.24  E-value=0.037  Score=46.55  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             CCCCccEEEecCCcCCC-CcCC-CCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce
Q 009616          159 SAKLLTSLKLFGCKLEQ-PSHC-ANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR  223 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~  223 (531)
                      ....|+..+|++|.|.. |+.+ ..+|.++.|+|++|.+.+  ++.-++.+|.|+.|+++.|+....
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~  115 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAE  115 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccc
Confidence            34556666777777765 4333 456677888888777643  444477778888888777766443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.05  E-value=0.15  Score=45.91  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             ccCCCCccEEEEeCCCCCh-hhhhhhhcCCCCCcEEEeccccchhHHHhc----Ccccceecccccc
Q 009616          270 VAECPHLRKLVLFLPHFND-QEFHPLISKFPLLEDLSIISLETLERIMIS----SNRLMHLEVYNCS  331 (531)
Q Consensus       270 ~~~~~~L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~----~~~L~~L~l~~c~  331 (531)
                      +.++++++.|.+.++.--+ ..+..+-.-.++|+.|+|++|..|+.-...    +++|+.|.+.+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4456666666665554333 333444445678888888888776654443    3566666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.53  E-value=0.26  Score=27.30  Aligned_cols=14  Identities=36%  Similarity=0.344  Sum_probs=8.4

Q ss_pred             CccEEEecCCcCCC
Q 009616          162 LLTSLKLFGCKLEQ  175 (531)
Q Consensus       162 ~L~~L~L~~~~l~~  175 (531)
                      +|++|+|++|.+..
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            35666666665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13013 F-box-like_2: F-box-like domain

Probab=83.15  E-value=1.1  Score=36.43  Aligned_cols=30  Identities=13%  Similarity=0.202  Sum_probs=26.9

Q ss_pred             cCCCCChHHHHHHhcCCChHHHHHHhhhhh
Q 009616            9 HISDLPTFIIHHIMSFLSPKDVVRTGILST   38 (531)
Q Consensus         9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSk   38 (531)
                      .+.+||+||+..|+.+-...+.......++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            378899999999999999999988887776

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.64  E-value=0.68  Score=49.23  Aligned_cols=39  Identities=31%  Similarity=0.558  Sum_probs=36.3

Q ss_pred             CCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            5 VDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         5 ~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      ...|.|+.||-|+..+||++|+.+++++++++|+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            356899999999999999999999999999999999865

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.55  E-value=0.91  Score=25.57  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=11.8

Q ss_pred             CCccCEEEeeeEEechHhHHH
Q 009616          182 LQSLKKLSLDEVYVNDQMVQS  202 (531)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~  202 (531)
                      +++|++|+|++|.+++..+..
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHH
Confidence            356777777777776555544

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=82.29  E-value=1.2  Score=22.90  Aligned_cols=13  Identities=31%  Similarity=0.340  Sum_probs=6.4

Q ss_pred             CccEEEecCCcCC
Q 009616          162 LLTSLKLFGCKLE  174 (531)
Q Consensus       162 ~L~~L~L~~~~l~  174 (531)
                      +|+.|+|++|++.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5666666666654

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	531
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 60/353 (16%), Positives = 112/353 (31%), Gaps = 61/353 (17%)

Query: 3   ETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKSR 62
           E         LP  ++  I S L   ++++   +   W +       L  D++ +     
Sbjct: 2   ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR-------LASDESLWQTLDL 54

Query: 63  VKRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSP 122
             + L  ++   +  +    + R    F+D  L       F +Q +              
Sbjct: 55  TGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSP-FRVQHMD------------- 99

Query: 123 LFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHC--A 180
                           L   VI        L   +     L +L L G +L  P     A
Sbjct: 100 ----------------LSNSVIEVS----TLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 181 NLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEA-----HKLKS 234
              +L +L+L      ++  +Q+L+  C  L++L+  +CF      +  A       +  
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199

Query: 235 LILRFTYQEL--ESVEIAVPSLQQL-ELSFSRVPRLLD-----VAECPHLRKLVL-FLPH 285
           L L    + L    +   V     L  L  S    L +       +  +L+ L L     
Sbjct: 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259

Query: 286 FNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINV 338
              +    L  + P L+ L +  +     + +    L HL++ NCS    I  
Sbjct: 260 IIPETLLEL-GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTIAR 310

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 53/367 (14%), Positives = 115/367 (31%), Gaps = 45/367 (12%)

Query: 9   HISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQ-TSFPVLDFDQNNFLVKSRVKRV 66
                   +I  +M+++  PKD     ++   W K    +   +           R+ R 
Sbjct: 12  SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRR 71

Query: 67  LPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLR-ISVSLLEVKE----SS 121
            P NL  +         L+   R    +L      G+    +  IS +L ++K       
Sbjct: 72  FP-NLRSL--------KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122

Query: 122 PLFDKWVELAMENGVKEL------DFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ 175
            + D  ++   +    +L           T     + L   +   + + +L +      +
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTT----DGLLSIVTHCRKIKTLLMEESSFSE 178

Query: 176 ---------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI 226
                      H  +L+ L     +   ++ + ++++ R CR L  +       L+ +  
Sbjct: 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238

Query: 227 -SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLD------VAECPHLRKL 279
              A  L+        +++   E  +  +   +L    +  +              +RKL
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298

Query: 280 VLFLPHFNDQEFHPLISKFPLLEDLSI---ISLETLERIMISSNRLMHLEVYNCSGLNRI 336
            L       ++   LI K P LE L     I    LE +     +L  L +   +    +
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358

Query: 337 NVDAPNL 343
             +   +
Sbjct: 359 EDEEGLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 21/201 (10%)

Query: 148 NSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANL----QSLKKLSLDEVYVNDQMVQSL 203
           N    +P+   +      L   G     P+    L      ++KL L    +  +   +L
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 204 VRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSF 261
           +++C  LE L      G + L        +LK L +                 Q +E   
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG-----------ADEQGMEDEE 362

Query: 262 SRV--PRLLDVAE-CPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI-MI 317
             V    L+ +A+ C  L  + +++    ++    + +    L D  ++ L+  ERI  +
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422

Query: 318 SSNRLMHLEVYNCSGLNRINV 338
             +  +   +  C  L R   
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAF 443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 177 SHCANLQSLK--------KLSLDEVYVNDQMVQSLVRECRVLEDLSFF------------ 216
            +C  L+ L+         +  +E  V+ + + +L + C+ LE ++ +            
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 217 --YCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVA--- 271
             Y   L   R+    + + +        + S+ I    L++      R   L D+    
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY-LRQGGLTDLGLSY 457

Query: 272 ---ECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI----ISLETLERIMISSNRLMH 324
                P++R ++L     +D+         P L+ L +     S   +   +     L +
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

Query: 325 LEVYNCS 331
           L V    
Sbjct: 518 LWVQGYR 524

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 55/359 (15%), Positives = 114/359 (31%), Gaps = 46/359 (12%)

Query: 10  ISDLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQ----TSFPVLDFDQNNF-LVKSRV 63
               P  ++ H+ SF+   KD     ++  +W + +        + +    +   V  R 
Sbjct: 6   ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65

Query: 64  KRVLPFNLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPL 123
            +V    L+      +F      +  +V   +         ++++R+   ++       +
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 124 FDKWVELAMENGVKELDF---EVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ----- 175
              +         K L     E  +    + A+     + + L  L L    ++      
Sbjct: 126 AKSFKNF------KVLVLSSCEGFSTD-GLAAIAA---TCRNLKELDLRESDVDDVSGHW 175

Query: 176 ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEA 229
               P    +L SL  +S     V+   ++ LV  C  L+ L       L++L   +  A
Sbjct: 176 LSHFPDTYTSLVSLN-ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234

Query: 230 HKLKSLILRFTYQE-----LESVEIAVPSLQQLELSFSRVPRLLDVA------ECPHLRK 278
            +L+ L       E        + +A+   ++L    S     +          C  L  
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL-RCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 279 LVLFLPHFNDQEFHPLISKFPLLEDLSI---ISLETLERIMISSNRLMHLEVYNCSGLN 334
           L L        +   L+ + P L+ L +   I    LE +  +   L  L V+      
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 35/210 (16%)

Query: 160 AKLLTSLKLFGCKLEQPSHCANLQSLKKL-SLDEVY-VNDQMVQSLVRECRVLEDLSFFY 217
              LT+L L    ++       L    KL  L  +  + D  ++ L   C+ L +L  F 
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 218 CFGLKR---LRISEA---------HKLKSLIL---RFTYQELESVEIAVPSLQQLELSFS 262
                    + ++E           KL+S++    + T   L ++    P++ +  L   
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 263 RVPRLLDVAE-------------CPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI--- 306
                  +               C  LR+L L      D+ F  + +    +E LS+   
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFA 466

Query: 307 -ISLETLERIMISSNRLMHLEVYNCSGLNR 335
             S   +  ++   + L  LE+ +C   ++
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 29/175 (16%)

Query: 177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI 236
           +  ++   L+++ L  + V D  ++ + +  +  + L    C G                
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG---------------- 142

Query: 237 LRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVA------ECPHLRKLVL--FLPHFND 288
             F+   L ++     +L++L+L  S V  +              L  L +       + 
Sbjct: 143 --FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200

Query: 289 QEFHPLISKFPLLEDLSI---ISLETLERIMISSNRLMHLEVYNCSGLNRINVDA 340
                L+++ P L+ L +   + LE L  ++  + +L  L     +   R +V +
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 21/204 (10%)

Query: 144 ITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ 201
               +  + L   +   K L  L  F   +    P+  +    L  L+L    V    + 
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 202 SLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVEIAV--PSLQQL 257
            L+ +C  L+ L          L    S    L+ L +  +   +    +A+    L  +
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 258 ELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMI 317
                          CP L  ++ F     +     +    P +    +  +E      +
Sbjct: 368 ------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 318 SSNRL---MHLEVYNCSGLNRINV 338
           +   L       V +C  L R+++
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSL 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 33/267 (12%)

Query: 146 DKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSL-V 204
           +  + + + +   +   LTSL      +   +    L  L KL           + +L +
Sbjct: 29  EMQATDTISEEQLAT--LTSLDCHNSSITDMTGIEKLTGLTKLIC-----TSNNITTLDL 81

Query: 205 RECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIA-VPSLQQLELSFSR 263
            +   L  L+      L  L ++   KL  L       +L  ++++  P L  L  + + 
Sbjct: 82  SQNTNLTYLACDSN-KLTNLDVTPLTKLTYLNCDTN--KLTKLDVSQNPLLTYLNCARNT 138

Query: 264 VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE----------DLSIISLETLE 313
           +  + DV+    L +L     H N +     ++    L           +L +   + L 
Sbjct: 139 LTEI-DVSHNTQLTELDC---HLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLN 194

Query: 314 RIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGD 373
           R+   +N +  L++     L  ++  +  L   D                 +   +   +
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTY-------FDCSVNPLTE 247

Query: 374 IDTHWYLNLMEFIGAFNQIGELHLSLN 400
           +D      L         + E+ L+ N
Sbjct: 248 LDVSTLSKLTTLHCIQTDLLEIDLTHN 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 72/465 (15%), Positives = 150/465 (32%), Gaps = 123/465 (26%)

Query: 2   DETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVLDFDQNNFLVKS 61
           + T  +DH S++        +   S +  +R  +     + ++    VL  +     V++
Sbjct: 212 NWTSRSDHSSNIK-------LRIHSIQAELRRLLK---SKPYENCLLVLL-N-----VQN 255

Query: 62  RVKRVL-PFNLEDMMSRKNFCKSL-----RKFIRFVDASLHRFCELGFPMQKLRISVSLL 115
              +    FNL         CK L     ++   F+ A+          +    ++   L
Sbjct: 256 --AKAWNAFNLS--------CKILLTTRFKQVTDFLSAATTTH----ISLDHHSMT---L 298

Query: 116 EVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ 175
              E   L  K+++       ++L  EV+T     N    +I +     S++      + 
Sbjct: 299 TPDEVKSLLLKYLDCR----PQDLPREVLT----TNPRRLSIIAE----SIRDGLATWDN 346

Query: 176 PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED--------LSFFYCFGLKRLR 225
             H  C  L ++ + SL+ +   +   + +     V           LS  +   +K   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 226 ISEAHKL--KSLILR----FTYQELESVEIAVPSLQQ-LELSFSRVPRLLDVAECPHLRK 278
           +   +KL   SL+ +     T          +PS+   L++       L       H R 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS--------IPSIYLELKVKLENEYAL-------H-RS 448

Query: 279 LVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINV 338
           +V    H+N  +        P   D    S               H+  ++   +     
Sbjct: 449 IV---DHYNIPKTFDSDDLIPPYLDQYFYS---------------HI-GHHLKNIEHPER 489

Query: 339 DA--PNL-VSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGEL 395
                 + + F F +  I   ST      ++L +    +    Y     +I   +   + 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-NTLQQLKF--YKP---YI--CDNDPKY 541

Query: 396 HLSLN-YKQVLFNIDE--FRSCHPSLPLQVESLSLFMESFSLYMD 437
              +N     L  I+E    S +  L L+   ++L  E  +++ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL-LR---IALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 9e-07
 Identities = 67/480 (13%), Positives = 134/480 (27%), Gaps = 151/480 (31%)

Query: 116 EVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAK-----------LLT 164
           E  E    +   + +  +  V   D + + D      +P++I S +           +  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQD------MPKSILSKEEIDHIIMSKDAVSG 63

Query: 165 SLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL 224
           +L+LF   L +       Q   +  L   Y    ++  +  E R    ++  Y     RL
Sbjct: 64  TLRLFWTLLSKQEEMV--QKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 225 -------------RISEAHKLKSLILRFTYQELESVE-IAV--------PSLQQLELSFS 262
                        R+    KL+  +      EL   + + +          +        
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 263 RVPRL-------LDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI 315
           +V          L++  C     ++  L        + +   +    D S      +  I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 316 MISSNRLMHLEVYNCSGLNRI--NVDAPNLV-SFDFEDNPIPIVSTNAPCPLNVLFSNFG 372
                RL+  + Y    L  +  NV       +F+              C   +L     
Sbjct: 231 QAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLS------------CK--ILL---- 270

Query: 373 DIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDE----FRSC----HPSLPLQVES 424
              T  +  + +F+ A       H+SL++  +    DE               LP +V +
Sbjct: 271 ---TTRFKQVTDFLSAATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 425 -----LSLFMESFS---------LYMDV--------------VPSEYEILLDDLFWIFYP 456
                LS+  ES            +++                P+EY  + D L  +F P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VF-P 382

Query: 457 KN-------LCLSPENWRYRPFVMWF---YDHLQNISTNCCNGCQIKCW----RHYLKGI 502
            +       L            ++WF      +  +         ++         +  I
Sbjct: 383 PSAHIPTILLS-----------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 30/237 (12%)

Query: 148 NSVNALPQTIFSA-----KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQ 201
           N +  +            ++  SL +    ++           L +L+L   + +  +++
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 202 SLVRECRVLE--DLSFFYCFGLKRLRISEAHKLKSL------ILRFTYQELESVEIAV-- 251
           + ++    L    L        + L I E   ++ L        R TY    S +I    
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 252 --PSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPL-------ISKFPLLE 302
              ++  + L+   +  L DV +    + L +            L       ++      
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342

Query: 303 DLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTN 359
               ++L +L  + +S N L      + S L        +L   D   N   I+S N
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-----TNSLRHLDLSFNGAIIMSAN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 42/248 (16%)

Query: 146 DKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSL 203
           D  + + L  T F    ++S+ L   ++ +      +    L  ++L     N  M+  +
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG---N--MLTEI 472

Query: 204 VRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELS--- 260
            +     E+ +F   + L  + +    KL  L   F    L       P L  ++LS   
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTL-------PYLVGIDLSYNS 524

Query: 261 FSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSN 320
           FS+ P          L+     + +  D + +  + ++P      I    +L ++ I SN
Sbjct: 525 FSKFPT--QPLNSSTLK--GFGIRNQRDAQGNRTLREWPE----GITLCPSLTQLQIGSN 576

Query: 321 RLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP------LNVLFSNFGDI 374
            +  +               PN+   D +DNP   +  +  CP        + +    DI
Sbjct: 577 DIRKVNEKIT----------PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

Query: 375 DTHWYLNL 382
                L++
Sbjct: 627 RGCDALDI 634

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 54/230 (23%)

Query: 163 LTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLK 222
                L    +        L S+ ++  +   +              ++ + +       
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS------------VQGIQYL------ 64

Query: 223 RLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVL 281
                    +  L L      +++ +   + +L  L L  +++  L  + +   L+ L L
Sbjct: 65  -------PNVTKLFLNGNKLTDIKPLT-NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116

Query: 282 FLPHFNDQEFHPLISKFPLLEDLSI----IS-------LETLERIMISSNRLMHLE-VYN 329
                +D      +   P LE L +    I+       L  L+ + +  N++  +  +  
Sbjct: 117 EHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 330 CSGLNRINVDA------------PNLVSFDFEDNPIPIVSTNAPCPLNVL 367
            + L  + +               NL   +           N    L V 
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 7  ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRK 42
          A  ++ LP  +  +I+SFLSP D+ + G  +  W +
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 46/312 (14%), Positives = 82/312 (26%), Gaps = 62/312 (19%)

Query: 70  NLEDMMSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVE 129
             +   + + +   L ++ R  +A  +R+             +     +      D   +
Sbjct: 18  YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLED 77

Query: 130 LAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKL 188
                    L+         +   P   F    L  + +    L + P        L+ L
Sbjct: 78  ATQPG-RVALEL----RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETL 132

Query: 189 SLDEVYVNDQMVQSLVRECRVLEDL--SFFYCFGLKRLRISEAHKLKSLILRFTYQELES 246
           +L                   L  L  S      L+ L I    +L  L       +   
Sbjct: 133 TLA--------------RNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 247 VEIAVPSLQQLELSFSRVPRL------------LDVAECP---------HLRKL-VLFLP 284
               + +LQ L L ++ +  L            L +   P         HL KL  L L 
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 285 HFND-QEFHPLISKFPLLEDL-------------SIISLETLERIMISSN-RLMHL--EV 327
                + + P+      L+ L              I  L  LE++ +     L  L   +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 328 YNCSGLNRINVD 339
                   I V 
Sbjct: 298 AQLPANCIILVP 309

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 26/142 (18%)

Query: 228 EAHKLKSLILRFTYQELESVEIAV---PSLQQLELSFSRVPRLLDVAECPHLRKLVLFLP 284
            A + + + L      +E ++  +    + + L LS + + ++  ++   +LR L L   
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSL--- 77

Query: 285 HFND-QEFHPLISKFPLLEDLSI----IS-------LETLERIMISSNRLMHL-EVYNCS 331
             N  ++   L +    LE+L I    I+       L  L  + +S+N++ +  E+   +
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 332 GLNRINVDAPNLVSFDFEDNPI 353
            L         L       NP+
Sbjct: 138 AL-------DKLEDLLLAGNPL 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	531
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.63
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.52
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.48
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.47
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.4
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.39
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.38
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.33
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.32
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.32
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.1
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.96
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.79
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.78
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.0
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.97
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.92
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.58
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.47
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	87.31

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.6e-27  Score=253.94  Aligned_cols=437  Identities=13%  Similarity=0.082  Sum_probs=240.2

Q ss_pred             CCCCCCCccCC----CCChHHHHHHhcCC-ChHHHHHHhhhhhhhhhhhccCC-eeeeecCccccc-cccccccccc---
Q 009616            1 MDETVDADHIS----DLPTFIIHHIMSFL-SPKDVVRTGILSTTWRKFQTSFP-VLDFDQNNFLVK-SRVKRVLPFN---   70 (531)
Q Consensus         1 ~~~~~~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vSkrWr~lw~~~~-~L~f~~~~~~~~-~~~~~~~~~~---   70 (531)
                      |++. +.||++    +|||||+.+||+|| +.+|++++++|||||++++...+ .+.+. ..+... .+.-+.+|.-   
T Consensus         1 m~~~-~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L   78 (592)
T 3ogk_B            1 MEDP-DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSL   78 (592)
T ss_dssp             ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEE
T ss_pred             CCCh-hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEE
Confidence            5554 567776    89999999999999 89999999999999999853322 22111 111000 0000000000   


Q ss_pred             -------hhhh-hhhhhhhHhHHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEe
Q 009616           71 -------LEDM-MSRKNFCKSLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFE  142 (531)
Q Consensus        71 -------~~d~-~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~  142 (531)
                             ..|+ ...........   ..+..+.    .....++.+.+....     .......|+......++++|++.
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~~---~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           79 KLKGKPRAAMFNLIPENWGGYVT---PWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             EEECSCGGGGGTCSCTTSCCBCH---HHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             EecCCcchhhcccccccccccch---HHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECc
Confidence                   0000 00000000000   0111111    112346666665221     12334445544443457888776


Q ss_pred             eecCCCccccCCccccCCCCccEEEecCCcCCCC------cCCCCCCccCEEEeeeEEec---hHhHHHHHhCCcccceE
Q 009616          143 VITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQP------SHCANLQSLKKLSLDEVYVN---DQMVQSLVRECRVLEDL  213 (531)
Q Consensus       143 ~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~~l~~~~~Le~L  213 (531)
                      ... ......++.....|++|++|+|++|.+.+.      ....++++|++|++++|.++   ...++.++.+|++|++|
T Consensus       147 ~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          147 KCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             SCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            511 011122333334678888888888876541      12346788888888877764   45677777788888888


Q ss_pred             EeeecCCcce-eeccccccccEEEEEeeccc-----cceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCC
Q 009616          214 SFFYCFGLKR-LRISEAHKLKSLILRFTYQE-----LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       214 ~L~~c~~~~~-l~~~~l~~L~~L~l~~~~~~-----l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      ++.+|...+. -.+.++++|+.|+++.+...     .......+++|+.|.++++. ...+..+..+++|++|+|+++.+
T Consensus       226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            8888754331 11335678888888754311     11222356778888887765 55566677888999999988888


Q ss_pred             ChhhhhhhhcCCCCCcEEEeccccc---hhHHHhcCcccceecccc----------ccchh-----hhcccCCCcceeEe
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLET---LERIMISSNRLMHLEVYN----------CSGLN-----RINVDAPNLVSFDF  348 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~~---l~~l~~~~~~L~~L~l~~----------c~~L~-----~l~~~~~nL~sl~~  348 (531)
                      ++..+..++.++++|+.|++.++..   +..+...+++|++|++.+          |..+.     .+.-..++|+++.+
T Consensus       306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence            8777767778889999998885422   334444567888888884          65543     22234678888877


Q ss_pred             ecCCcC----ceec-CCCCCcEEEEEe---eccCChhh-hhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCC
Q 009616          349 EDNPIP----IVST-NAPCPLNVLFSN---FGDIDTHW-YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLP  419 (531)
Q Consensus       349 ~~~~~p----~~~~-~~~~L~~L~l~~---~~~~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~  419 (531)
                      ....+.    ..++ .+++|+.|+++.   .+.+.+.. ...+..++.++++|+.|+++.+........+..+.     .
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----~  460 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----Q  460 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----H
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----H
Confidence            555443    2223 377888888863   12222210 12355667778888888887533211110111111     1


Q ss_pred             CCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616          420 LQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE  464 (531)
Q Consensus       420 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~  464 (531)
                      .+++|++|+|..+.    ...   .++...+-.+++++.|.+..+
T Consensus       461 ~~~~L~~L~L~~n~----l~~---~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          461 YSPNVRWMLLGYVG----ESD---EGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             SCTTCCEEEECSCC----SSH---HHHHHHHTCCTTCCEEEEESC
T ss_pred             hCccceEeeccCCC----CCH---HHHHHHHhcCcccCeeeccCC
Confidence            25678888887662    121   123333344567788888554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.5e-27  Score=256.94  Aligned_cols=38  Identities=18%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             CCccCCCCChHHHHHHhcCCC-hHHHHHHhhhhhhhhhh
Q 009616            6 DADHISDLPTFIIHHIMSFLS-PKDVVRTGILSTTWRKF   43 (531)
Q Consensus         6 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr~l   43 (531)
                      +.|++++|||||+.+||+||+ .+|++++++|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            358999999999999999999 99999999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.2e-23  Score=210.00  Aligned_cols=233  Identities=19%  Similarity=0.264  Sum_probs=134.2

Q ss_pred             CCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhcc---CCeeeeecCccccccccccccccchhhhhhhhhhhH
Q 009616            6 DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTS---FPVLDFDQNNFLVKSRVKRVLPFNLEDMMSRKNFCK   82 (531)
Q Consensus         6 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~---~~~L~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   82 (531)
                      +...+++|||||+.+||+||+.+|+++++.|||||+++...   ...+++....+                         
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~-------------------------   59 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL-------------------------   59 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC-------------------------
Confidence            44578999999999999999999999999999999998532   12233322221                         


Q ss_pred             hHHHHHHHHHHHhcccccCCCccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccccCCCC
Q 009616           83 SLRKFIRFVDASLHRFCELGFPMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKNSVNALPQTIFSAKL  162 (531)
Q Consensus        83 ~~~~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~  162 (531)
                                                            .   +..+.....++++.+++..    ......+..++.+++
T Consensus        60 --------------------------------------~---~~~~~~~~~~~l~~L~l~~----n~l~~~~~~~~~~~~   94 (336)
T 2ast_B           60 --------------------------------------H---PDVTGRLLSQGVIAFRCPR----SFMDQPLAEHFSPFR   94 (336)
T ss_dssp             --------------------------------------C---HHHHHHHHHTTCSEEECTT----CEECSCCCSCCCCBC
T ss_pred             --------------------------------------C---HHHHHhhhhccceEEEcCC----ccccccchhhccCCC
Confidence                                                  0   1112222234555555543    112223333556667


Q ss_pred             ccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcce--ee--ccccccccEE
Q 009616          163 LTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKR--LR--ISEAHKLKSL  235 (531)
Q Consensus       163 L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~--l~--~~~l~~L~~L  235 (531)
                      |++|+|++|.+.+   +..+.++++|++|+|++|.+++. ....++.+++|++|++++|..++.  +.  +.++++|++|
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L  173 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  173 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence            7777777766543   33455667777777776666443 233455677777777776644332  11  2345666666


Q ss_pred             EEEee-c-c--ccceeeeeCC-cccEEEecccc-----ccceeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCcEE
Q 009616          236 ILRFT-Y-Q--ELESVEIAVP-SLQQLELSFSR-----VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       236 ~l~~~-~-~--~l~~~~~~~~-~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~~L  304 (531)
                      ++++| . .  .++.....++ +|++|++++|.     ...+..+..+++|+.|+++++. +++..+. .+.++++|+.|
T Consensus       174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L  252 (336)
T 2ast_B          174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHL  252 (336)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEE
T ss_pred             cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEe
Confidence            66666 3 1  1233334566 66666666663     1223344566666666666666 4543333 34556666666


Q ss_pred             Eecccc
Q 009616          305 SIISLE  310 (531)
Q Consensus       305 ~L~~c~  310 (531)
                      ++++|.
T Consensus       253 ~l~~~~  258 (336)
T 2ast_B          253 SLSRCY  258 (336)
T ss_dssp             ECTTCT
T ss_pred             eCCCCC
Confidence            666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=5.7e-21  Score=211.62  Aligned_cols=75  Identities=16%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             CcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEE
Q 009616          352 PIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMES  431 (531)
Q Consensus       352 ~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~  431 (531)
                      .+|..++++++|+.|+++. +.+.    +.++..++++++|+.|+|+.|...+.  +|+      .+..++.|++|+|+.
T Consensus       647 ~ip~~l~~l~~L~~L~Ls~-N~l~----g~ip~~l~~L~~L~~LdLs~N~l~g~--ip~------~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          647 YIPKEIGSMPYLFILNLGH-NDIS----GSIPDEVGDLRGLNILDLSSNKLDGR--IPQ------AMSALTMLTEIDLSN  713 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCS-SCCC----SCCCGGGGGCTTCCEEECCSSCCEEC--CCG------GGGGCCCCSEEECCS
T ss_pred             cCCHHHhccccCCEEeCcC-CccC----CCCChHHhCCCCCCEEECCCCcccCc--CCh------HHhCCCCCCEEECcC
Confidence            3456666777777777774 3333    23334456777777777776666655  562      344556777777777


Q ss_pred             eeeccCCC
Q 009616          432 FSLYMDVV  439 (531)
Q Consensus       432 ~~~~~~~~  439 (531)
                      |...|+.+
T Consensus       714 N~l~g~iP  721 (768)
T 3rgz_A          714 NNLSGPIP  721 (768)
T ss_dssp             SEEEEECC
T ss_pred             CcccccCC
Confidence            76655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=8.5e-20  Score=202.19  Aligned_cols=284  Identities=16%  Similarity=0.099  Sum_probs=190.3

Q ss_pred             cCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      ..+++|++|+|++|.+.+ .+.++++++|++|++++|.+.+. ++..++.+++|++|++++|...+.++...+++|++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            678889999999998877 44588899999999999988543 5666889999999999999876655555788999999


Q ss_pred             EEeec--cccceeeee-CCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          237 LRFTY--QELESVEIA-VPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       237 l~~~~--~~l~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      +++|.  +.++..... +++|++|++++|.  +..|..++.+++|+.|++++|.+++......+.++++|+.|++++|..
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            99887  234443333 5899999999998  567778899999999999999888655555578899999999998854


Q ss_pred             hhH----HHhcCcccceeccccccch----hhhcc-cCCCcceeEeecCC----cCceecCCCCCcEEEEEeeccCChhh
Q 009616          312 LER----IMISSNRLMHLEVYNCSGL----NRINV-DAPNLVSFDFEDNP----IPIVSTNAPCPLNVLFSNFGDIDTHW  378 (531)
Q Consensus       312 l~~----l~~~~~~L~~L~l~~c~~L----~~l~~-~~~nL~sl~~~~~~----~p~~~~~~~~L~~L~l~~~~~~~~~~  378 (531)
                      ...    +....++|+.|++.++.--    ..+.. ..++|+.+.+.+..    +|..+.++++|+.|+++. +.+.   
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~---  431 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF-NYLS---  431 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS-SEEE---
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC-Cccc---
Confidence            211    1111237788877765311    01100 02345555554443    345666778888888874 2222   


Q ss_pred             hhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccc
Q 009616          379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKN  458 (531)
Q Consensus       379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~  458 (531)
                       +.++..+.++++|+.|++..|...+.  +|.      .+..+++|++|++..|...+..+        ..+-.++.+++
T Consensus       432 -~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~------~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~  494 (768)
T 3rgz_A          432 -GTIPSSLGSLSKLRDLKLWLNMLEGE--IPQ------ELMYVKTLETLILDFNDLTGEIP--------SGLSNCTNLNW  494 (768)
T ss_dssp             -SCCCGGGGGCTTCCEEECCSSCCCSC--CCG------GGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCE
T ss_pred             -CcccHHHhcCCCCCEEECCCCcccCc--CCH------HHcCCCCceEEEecCCcccCcCC--------HHHhcCCCCCE
Confidence             22234456777888877776665544  552      34455777788877774332211        12233456777


Q ss_pred             eeecC
Q 009616          459 LCLSP  463 (531)
Q Consensus       459 l~l~~  463 (531)
                      |.+..
T Consensus       495 L~L~~  499 (768)
T 3rgz_A          495 ISLSN  499 (768)
T ss_dssp             EECCS
T ss_pred             EEccC
Confidence            77743

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=1.2e-18  Score=173.06  Aligned_cols=178  Identities=20%  Similarity=0.229  Sum_probs=133.1

Q ss_pred             HHHHHHcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhC
Q 009616          128 VELAMENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRE  206 (531)
Q Consensus       128 l~~~~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~  206 (531)
                      +..+...++++|++..    .....+|..++.+++|++|+|++|.+.. |..++++++|++|+|++|.+.  .++..+++
T Consensus        75 l~~~~~~~l~~L~L~~----n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~  148 (328)
T 4fcg_A           75 LEDATQPGRVALELRS----VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS  148 (328)
T ss_dssp             HHHHTSTTCCEEEEES----SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred             HhcccccceeEEEccC----CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence            3344446899999986    2345899999999999999999999887 778899999999999999886  35666889


Q ss_pred             CcccceEEeeecCCcceeec-----------cccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCC
Q 009616          207 CRVLEDLSFFYCFGLKRLRI-----------SEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAEC  273 (531)
Q Consensus       207 ~~~Le~L~L~~c~~~~~l~~-----------~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  273 (531)
                      +++|++|++++|...+.++.           .++++|+.|++++|. ..++.....+++|++|++++|. ...+..++.+
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l  228 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL  228 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence            99999999999987765542           236788888888876 3333334467777777777777 4445567777


Q ss_pred             CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616          274 PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL  312 (531)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l  312 (531)
                      ++|+.|++++|.+.+. ++..+.++++|+.|+|++|...
T Consensus       229 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          229 PKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             TTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTC
T ss_pred             CCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCch
Confidence            7777777777776643 4445667777777777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=2.9e-19  Score=193.51  Aligned_cols=169  Identities=10%  Similarity=0.127  Sum_probs=117.9

Q ss_pred             cCCcEEEEeeecCCCcccc------------------CCcccc--CCCCccEEEecCCcCCC--CcCCCCCCccCEEEee
Q 009616          134 NGVKELDFEVITDKNSVNA------------------LPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLD  191 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~------------------lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~  191 (531)
                      +++++|+|+.  +.  ...                  +|..+.  ++++|++|+|++|.+.+  |..++++++|++|+++
T Consensus       206 ~~L~~L~Ls~--n~--l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          206 TKLRQFYMGN--SP--FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             TTCCEEEEES--CC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             cCCCEEECcC--Cc--cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            5899999986  22  233                  999999  99999999999999887  8889999999999999


Q ss_pred             eEE-echHhHHHHHhCC------cccceEEeeecCCccee----eccccccccEEEEEeec-c-ccceeeeeCCcccEEE
Q 009616          192 EVY-VNDQMVQSLVREC------RVLEDLSFFYCFGLKRL----RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLE  258 (531)
Q Consensus       192 ~~~-~~~~~l~~~l~~~------~~Le~L~L~~c~~~~~l----~~~~l~~L~~L~l~~~~-~-~l~~~~~~~~~L~~L~  258 (531)
                      +|. +++..++..++.+      ++|++|++++|... .+    .+.++++|+.|++++|. . .++ ....+++|++|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            998 7663456555554      89999999988765 33    24577888888888886 2 444 333566777777


Q ss_pred             ecccc-ccceeeccCCCC-ccEEEEeCCCCChhhhhhhhcCC--CCCcEEEecccc
Q 009616          259 LSFSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKF--PLLEDLSIISLE  310 (531)
Q Consensus       259 l~~~~-~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~l~~~--~~L~~L~L~~c~  310 (531)
                      +++|. ...|..+..+++ |+.|++++|.++ . ++..+...  ++|+.|++++|.
T Consensus       360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~-lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y-IPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             CCSSEEEECCTTSEEECTTCCEEECCSSCCS-S-CCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCCCccccccHhhhhhcccCcEEEccCCcCc-c-cchhhhhcccCccCEEECcCCc
Confidence            77766 444445666666 666666666665 2 22223322  245555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=2.3e-18  Score=172.41  Aligned_cols=145  Identities=19%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee-ccccccccEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-ISEAHKLKSL  235 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~-~~~l~~L~~L  235 (531)
                      +..+++|++|++++|.+...+.+.++++|++|++++|.+.+.  +. +..+++|++|++++|.....+. +..+++|+.|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            344444555555444444433344444555555544444221  11 3444455555554443332211 2334445555


Q ss_pred             EEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccc
Q 009616          236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       236 ~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      ++++|. ..... ...+++|++|++++|. ...+ .+..+++|+.|+++++.+++...   +..+++|+.|++++|
T Consensus       161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN  231 (347)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred             EecCCCcCCchh-hccCCCCCEEEccCCcccccc-cccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC
Confidence            554443 11111 2234455555555544 1111 14445555555555554443211   344455555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.1e-18  Score=193.17  Aligned_cols=171  Identities=12%  Similarity=0.099  Sum_probs=124.1

Q ss_pred             cCCcEEEEeeecCCCccc----------------cCCcccc--CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeE
Q 009616          134 NGVKELDFEVITDKNSVN----------------ALPQTIF--SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEV  193 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~  193 (531)
                      ++++.|+|+.  +.....                .+|..+.  ++++|++|+|++|.+.+  |..++++++|++|+|++|
T Consensus       448 ~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          448 TKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             TTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            5899999986  322210                2899887  99999999999998877  778899999999999999


Q ss_pred             E-echHhHHHHHhCC-------cccceEEeeecCCcceee----ccccccccEEEEEeec-cccceeeeeCCcccEEEec
Q 009616          194 Y-VNDQMVQSLVREC-------RVLEDLSFFYCFGLKRLR----ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS  260 (531)
Q Consensus       194 ~-~~~~~l~~~l~~~-------~~Le~L~L~~c~~~~~l~----~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~  260 (531)
                      . +++..++..++.+       ++|++|+|++|... .++    +.++++|+.|++++|. ..++ ....+++|+.|+++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence            8 6653455545544       59999999998765 432    4578889999998887 4333 33467888888888


Q ss_pred             ccc-ccceeeccCCCC-ccEEEEeCCCCChhhhhhhhcCCC--CCcEEEecccc
Q 009616          261 FSR-VPRLLDVAECPH-LRKLVLFLPHFNDQEFHPLISKFP--LLEDLSIISLE  310 (531)
Q Consensus       261 ~~~-~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~l~~~~--~L~~L~L~~c~  310 (531)
                      +|. ...|..+..+++ |+.|+|++|.++ . ++..+...+  +|+.|+|++|.
T Consensus       604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~-lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y-IPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             SSCCSCCCTTSCEECTTCCEEECCSSCCC-S-CCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCccccchHHHhhccccCCEEECcCCCCC-c-CchhhhccccCCCCEEECcCCc
Confidence            887 555666777887 888888888776 2 334343333  36666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=8.2e-19  Score=182.40  Aligned_cols=302  Identities=14%  Similarity=0.077  Sum_probs=150.7

Q ss_pred             ccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHH-HHHhCCcccceEEeeecCCcceee---ccccc
Q 009616          157 IFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQ-SLVRECRVLEDLSFFYCFGLKRLR---ISEAH  230 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~  230 (531)
                      +..+++|++|+|++|.+.+  +..++++++|++|+|++|.+++..+. ..+..+++|++|+|++|...+..+   +.+++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            4444555555555554443  33444555555555555544322111 113445555555555554322211   23445


Q ss_pred             cccEEEEEeec-ccc-ceeee--eCCcccEEEecccc-ccc-ee--------eccCCCCccEEEEeCCCCChhhhhhhhc
Q 009616          231 KLKSLILRFTY-QEL-ESVEI--AVPSLQQLELSFSR-VPR-LL--------DVAECPHLRKLVLFLPHFNDQEFHPLIS  296 (531)
Q Consensus       231 ~L~~L~l~~~~-~~l-~~~~~--~~~~L~~L~l~~~~-~~~-~~--------~~~~~~~L~~L~L~~~~~~~~~~~~~l~  296 (531)
                      +|++|++++|. ... +....  ..++|+.|++++|. ... +.        .+..+++|+.|++++|.+++.....+..
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            55555555543 111 11111  12345555555544 111 00        1224466777777777776543332221


Q ss_pred             --CCCCCcEEEeccccchhH---------------HHhcCcccceeccccccchh---hhcccCCCcceeEeecCCc---
Q 009616          297 --KFPLLEDLSIISLETLER---------------IMISSNRLMHLEVYNCSGLN---RINVDAPNLVSFDFEDNPI---  353 (531)
Q Consensus       297 --~~~~L~~L~L~~c~~l~~---------------l~~~~~~L~~L~l~~c~~L~---~l~~~~~nL~sl~~~~~~~---  353 (531)
                        ..++|+.|++++|.....               .....++|+.|++.++.--.   ...-..++|+.+.+.+..+   
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence              236677777766532110               00112456666666542110   0111234666666665554   


Q ss_pred             -CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          354 -PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       354 -p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                       |..+..+++|+.|++++ +.+...    .+..+.++++|+.|+++.|.....  .|     . .+..+++|++|+|..|
T Consensus       315 ~~~~~~~l~~L~~L~Ls~-N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~--~~-----~-~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQ-NFLGSI----DSRMFENLDKLEVLDLSYNHIRAL--GD-----Q-SFLGLPNLKELALDTN  381 (455)
T ss_dssp             CTTTTTTCTTCCEEECCS-SCCCEE----CGGGGTTCTTCCEEECCSSCCCEE--CT-----T-TTTTCTTCCEEECCSS
T ss_pred             ChhHhcCcccCCEEECCC-CccCCc----ChhHhcCcccCCEEECCCCccccc--Ch-----h-hccccccccEEECCCC
Confidence             34566788999999985 444332    234567889999999987766443  34     2 5667899999999988


Q ss_pred             eeccCCCchhHHHHHHhHhhhccccceeecCCCC-CchhhHHHHHHHh
Q 009616          433 SLYMDVVPSEYEILLDDLFWIFYPKNLCLSPENW-RYRPFVMWFYDHL  479 (531)
Q Consensus       433 ~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~  479 (531)
                      ....- +.       ..+-..+.+++|.+....+ ...+..+++..++
T Consensus       382 ~l~~~-~~-------~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  421 (455)
T 3v47_A          382 QLKSV-PD-------GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  421 (455)
T ss_dssp             CCSCC-CT-------TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             ccccC-CH-------hHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence            43211 11       1123456788998864421 2344444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=3.5e-18  Score=171.08  Aligned_cols=272  Identities=17%  Similarity=0.149  Sum_probs=188.0

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++++|++..    .....+|. +..+++|++|++++|.+...+.+.++++|++|++++|.+..  ++ .+..+++|++
T Consensus        43 l~~L~~L~l~~----~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAG----EKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCS----SCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred             cccccEEEEeC----Cccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCE
Confidence            46899999976    22344554 77899999999999999883338899999999999998854  23 3789999999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec--cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |++++|.......+.++++|+.|++++|.  ..+.. ...+++|++|++++|.......+..+++|+.|++++|.+++- 
T Consensus       115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-  192 (347)
T 4fmz_A          115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-  192 (347)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-
T ss_pred             EECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc-
Confidence            99999976554446788999999999996  22222 447899999999999822222388999999999999998853 


Q ss_pred             hhhhhcCCCCCcEEEeccccchhHH-HhcCcccceeccccccchhhh--cccCCCcceeEeecCCcC--ceecCCCCCcE
Q 009616          291 FHPLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCSGLNRI--NVDAPNLVSFDFEDNPIP--IVSTNAPCPLN  365 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~c~~L~~l--~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~  365 (531)
                       .. +..+++|+.|++++|...... ...+++|+.|++.+|. +..+  .-..++|+.+.+.+..+.  ..+..+++|+.
T Consensus       193 -~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  269 (347)
T 4fmz_A          193 -SP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKM  269 (347)
T ss_dssp             -GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             -cc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence             22 678999999999997542111 2345678888777653 1111  123456666666555443  33455677777


Q ss_pred             EEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       366 L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      |++++ +.+...      ..+..+++|+.|+++.|.....  .|+      .+..+++|++|+++.|
T Consensus       270 L~l~~-n~l~~~------~~~~~l~~L~~L~L~~n~l~~~--~~~------~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          270 LNVGS-NQISDI------SVLNNLSQLNSLFLNNNQLGNE--DME------VIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             EECCS-SCCCCC------GGGGGCTTCSEEECCSSCCCGG--GHH------HHHTCTTCSEEECCSS
T ss_pred             EEccC-CccCCC------hhhcCCCCCCEEECcCCcCCCc--Chh------HhhccccCCEEEccCC
Confidence            77764 333331      2246677777777776554332  221      2334567777777776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=6.5e-19  Score=184.40  Aligned_cols=280  Identities=18%  Similarity=0.106  Sum_probs=166.6

Q ss_pred             cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .+++.|+|+.  +  ....+ |..+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.+..- ....++++++|
T Consensus        32 ~~l~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDLGK--N--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEECCS--S--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTC
T ss_pred             CCCcEEECCC--C--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCC
Confidence            3677777764  1  22233 4456677888888888887766  55677788888888888776431 22335677888


Q ss_pred             ceEEeeecCCccee--eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCC
Q 009616          211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~  284 (531)
                      ++|+|++|......  .+.++++|+.|++++|. ..+ +.....+++|++|++++|. ... +..+..+++|+.|+++++
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            88888877653332  24467788888888775 222 1222357788888888877 222 334777888888888887


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccchhHHHh---cCcccceeccccccchhhhc----ccCCCcceeEeecCCcC---
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYNCSGLNRIN----VDAPNLVSFDFEDNPIP---  354 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~----~~~~nL~sl~~~~~~~p---  354 (531)
                      .++. .....+.++++|+.|++++|..+..+..   ...+|+.|++.++. +..+.    -..++|+.+.+++..+.   
T Consensus       187 ~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          187 NINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             CCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             cCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccC
Confidence            7764 3344566778888888887754333221   12356666666542 22211    12345555555554432   


Q ss_pred             -ceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          355 -IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       355 -~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                       ..+..+++|+.|++++ +.+....    +..+.++++|+.|+++.|....   +|+.     .+..+++|++|+|..|.
T Consensus       265 ~~~~~~l~~L~~L~L~~-n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~---~~~~-----~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          265 GSMLHELLRLQEIQLVG-GQLAVVE----PYAFRGLNYLRVLNVSGNQLTT---LEES-----VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             TTSCTTCTTCCEEECCS-SCCSEEC----TTTBTTCTTCCEEECCSSCCSC---CCGG-----GBSCGGGCCEEECCSSC
T ss_pred             hhhccccccCCEEECCC-CccceEC----HHHhcCcccCCEEECCCCcCce---eCHh-----HcCCCcccCEEEccCCC
Confidence             3345567777777764 3333221    2234566777777776554332   3321     13345677777777663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.74  E-value=3.1e-18  Score=182.41  Aligned_cols=75  Identities=13%  Similarity=-0.036  Sum_probs=45.6

Q ss_pred             hhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC-C
Q 009616          387 GAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE-N  465 (531)
Q Consensus       387 ~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~-~  465 (531)
                      .++++|+.|+++.|...  . ||       ....+++|++|+|+.|...+..+        ..+-..+.+++|.+... +
T Consensus       448 ~~l~~L~~L~Ls~N~l~--~-ip-------~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          448 LFLPRLQELYISRNKLK--T-LP-------DASLFPVLLVMKISRNQLKSVPD--------GIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CCCTTCCEEECCSSCCS--S-CC-------CGGGCTTCCEEECCSSCCCCCCT--------TGGGGCTTCCEEECCSSCB
T ss_pred             ccCChhcEEECCCCccC--c-CC-------CcccCccCCEEecCCCccCCcCH--------HHHhcCcccCEEEecCCCc
Confidence            46778888888766554  2 66       23456889999999884332211        11334567888888544 2


Q ss_pred             CCchhhHHHHHHHh
Q 009616          466 WRYRPFVMWFYDHL  479 (531)
Q Consensus       466 ~~~~~~~~~~~~~~  479 (531)
                      .+.++..+++..++
T Consensus       510 ~~~~~~~~~l~~~l  523 (549)
T 2z81_A          510 DCSCPRIDYLSRWL  523 (549)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             cCCCccHHHHHHHH
Confidence            24566666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=7.1e-19  Score=189.72  Aligned_cols=170  Identities=15%  Similarity=0.117  Sum_probs=127.4

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      +..+++|++|++++|.+...+.+..+++|++|++++|.+.  .++.+  .+++|++|++++|...+...+..+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            5667899999999998877347788899999999999882  34443  8899999999999777777777889999999


Q ss_pred             EEeec-ccc---ceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          237 LRFTY-QEL---ESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       237 l~~~~-~~l---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      +++|. ...   +.....+++|++|++++|. ...+..+..+++|+.|++++|.+++......+.++++|+.|++++|..
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            99886 222   2233468899999999998 445567888999999999998887644435677889999999998864


Q ss_pred             hhHH---HhcCcccceeccccc
Q 009616          312 LERI---MISSNRLMHLEVYNC  330 (531)
Q Consensus       312 l~~l---~~~~~~L~~L~l~~c  330 (531)
                      ....   ....++|+.|++.++
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTC
T ss_pred             CccchhhhcCCCCCCEEECCCC
Confidence            2211   122345556655554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=5.5e-17  Score=169.20  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeec
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYC  218 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c  218 (531)
                      +..+++|++|++++|.+.+.+.++++++|++|++++|.+.+.  +. +..+++|++|++++|
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSN  144 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEE
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCC
Confidence            344444444444444444411144444444444444444221  11 344444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.73  E-value=2e-18  Score=179.39  Aligned_cols=273  Identities=15%  Similarity=0.071  Sum_probs=166.4

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcC--CCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~  209 (531)
                      +++++|+++.   .......|..+..+++|++|+|++|.+.+  +..  ++++++|++|+|++|.+.+.....+++++++
T Consensus        79 ~~L~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILKLDY---NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCCEEECTT---CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccCCEEeCCC---CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            5899999975   22223347788899999999999999987  333  8889999999999999854333344789999


Q ss_pred             cceEEeeecCCcceee--cccc--ccccEEEEEeec-ccccee---------eeeCCcccEEEecccc--ccceeecc--
Q 009616          210 LEDLSFFYCFGLKRLR--ISEA--HKLKSLILRFTY-QELESV---------EIAVPSLQQLELSFSR--VPRLLDVA--  271 (531)
Q Consensus       210 Le~L~L~~c~~~~~l~--~~~l--~~L~~L~l~~~~-~~l~~~---------~~~~~~L~~L~l~~~~--~~~~~~~~--  271 (531)
                      |++|++++|...+...  +..+  ++|+.|++++|. ..+...         ...+++|++|++++|.  +..+..+.  
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            9999999997533211  1111  456666666654 111111         1123556666666664  11111111  


Q ss_pred             -------------------------------------CCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhH
Q 009616          272 -------------------------------------ECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (531)
Q Consensus       272 -------------------------------------~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~  314 (531)
                                                           ..++|+.|++++|.+++ ..+..+.++++|+.|+|++|..-..
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCCccccc
Confidence                                                 12466666666666663 3444556666777777766532110


Q ss_pred             HHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccce
Q 009616          315 IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGE  394 (531)
Q Consensus       315 l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~  394 (531)
                      ...        .+..+++|+.+.++.+.+..      ..|..+..+++|+.|++++ +.+...    .+..+.++++|+.
T Consensus       315 ~~~--------~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~~----~~~~~~~l~~L~~  375 (455)
T 3v47_A          315 DDN--------AFWGLTHLLKLNLSQNFLGS------IDSRMFENLDKLEVLDLSY-NHIRAL----GDQSFLGLPNLKE  375 (455)
T ss_dssp             CTT--------TTTTCTTCCEEECCSSCCCE------ECGGGGTTCTTCCEEECCS-SCCCEE----CTTTTTTCTTCCE
T ss_pred             Chh--------HhcCcccCCEEECCCCccCC------cChhHhcCcccCCEEECCC-Cccccc----ChhhccccccccE
Confidence            000        11223333444333333311      1235567789999999985 444332    2344678999999


Q ss_pred             eEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009616          395 LHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD  437 (531)
Q Consensus       395 L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~  437 (531)
                      |+++.|....   +|..     .+..+++|++|+|+.|...++
T Consensus       376 L~L~~N~l~~---~~~~-----~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          376 LALDTNQLKS---VPDG-----IFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             EECCSSCCSC---CCTT-----TTTTCTTCCEEECCSSCBCCC
T ss_pred             EECCCCcccc---CCHh-----HhccCCcccEEEccCCCcccC
Confidence            9998766543   4521     245689999999999854433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=5.8e-18  Score=182.56  Aligned_cols=246  Identities=19%  Similarity=0.135  Sum_probs=144.2

Q ss_pred             ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee---ccccccc
Q 009616          157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKL  232 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~~L  232 (531)
                      +..+++|++|++++|.+.. |..+.++++|++|++++|.+... .+..++.+++|++|++++|...+.+.   +.++++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            5567778888888777766 66677777888888877776432 23346677788888887776544332   4456777


Q ss_pred             cEEEEEeec-ccc---ceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616          233 KSLILRFTY-QEL---ESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (531)
Q Consensus       233 ~~L~l~~~~-~~l---~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L  306 (531)
                      ++|++++|. ...   +.....+++|++|++++|.  ...+..++.+++|+.|++++|.+++......+.++++|+.|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            788777775 221   1122356777777777776  3334566777777777777777765444455667777777777


Q ss_pred             ccccchhH---HHhcCcccceeccccccchhhhcccCCCcceeEeecCCc--CceecCCCCCcEEEEEeeccCChhhhhh
Q 009616          307 ISLETLER---IMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI--PIVSTNAPCPLNVLFSNFGDIDTHWYLN  381 (531)
Q Consensus       307 ~~c~~l~~---l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~--p~~~~~~~~L~~L~l~~~~~~~~~~~~~  381 (531)
                      ++|.....   .....++|+.|++.++.           +.     +..+  +..+..+++|+.|++++ +.+.+.    
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------l~-----~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~----  491 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNLQGNH-----------FP-----KGNIQKTNSLQTLGRLEILVLSF-CDLSSI----  491 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEECTTCB-----------CG-----GGEECSSCGGGGCTTCCEEECTT-SCCCEE----
T ss_pred             CCCccCCcCHHHHhCCCCCCEEECCCCC-----------CC-----ccccccchhhccCCCccEEECCC-CccCcc----
Confidence            77643211   11123444444444332           11     1001  12344567777777764 333322    


Q ss_pred             HHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          382 LMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       382 l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                      .+..+.++++|+.|+++.|.....  .|+      .+..+..| +|+++.|.
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~--~~~------~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSS--SIE------ALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGG--GGG------GGTTCCSC-EEECCSSC
T ss_pred             ChhhhccccCCCEEECCCCccCcC--Chh------HhCccccc-EEECcCCc
Confidence            123345667777777766554433  331      33445666 66666663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.72  E-value=4.1e-18  Score=178.28  Aligned_cols=292  Identities=16%  Similarity=0.038  Sum_probs=208.3

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-  224 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-  224 (531)
                      .....+|..+.  +++++|+|++|.+.+  +..+.++++|++|+|++|.+... .+..+.++++|++|+|++|...... 
T Consensus        21 ~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           21 KRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             CCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCc
Confidence            34556777654  689999999999987  56788999999999999987542 2345789999999999998753321 


Q ss_pred             -eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCC
Q 009616          225 -RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFP  299 (531)
Q Consensus       225 -~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  299 (531)
                       .+.++++|++|++++|. ... +.....+++|++|++++|.  ...+..+.++++|+.|++++|.++. .....+.+++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~  176 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLH  176 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccC
Confidence             24578999999999987 222 2233478999999999998  3345578999999999999999984 4456688999


Q ss_pred             CCcEEEeccccchhH---HHhcCcccceeccccccchhhhc---ccCCCcceeEeecCCc---C-ceecCCCCCcEEEEE
Q 009616          300 LLEDLSIISLETLER---IMISSNRLMHLEVYNCSGLNRIN---VDAPNLVSFDFEDNPI---P-IVSTNAPCPLNVLFS  369 (531)
Q Consensus       300 ~L~~L~L~~c~~l~~---l~~~~~~L~~L~l~~c~~L~~l~---~~~~nL~sl~~~~~~~---p-~~~~~~~~L~~L~l~  369 (531)
                      +|+.|+|+++..-..   ....+++|+.|++.++..+..+.   ....+|+.+.+.+..+   | ..+..+++|+.|+++
T Consensus       177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  256 (477)
T 2id5_A          177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS  256 (477)
T ss_dssp             TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred             CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence            999999999753211   12235688899988876554332   2334778888777654   3 356678999999998


Q ss_pred             eeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHh
Q 009616          370 NFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDD  449 (531)
Q Consensus       370 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~  449 (531)
                      + +.+....    ...+.++++|+.|.++.+.....  .|     . .+..+++|++|+|+.|...+- +..       .
T Consensus       257 ~-n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~--~~-----~-~~~~l~~L~~L~L~~N~l~~~-~~~-------~  315 (477)
T 2id5_A          257 Y-NPISTIE----GSMLHELLRLQEIQLVGGQLAVV--EP-----Y-AFRGLNYLRVLNVSGNQLTTL-EES-------V  315 (477)
T ss_dssp             S-SCCCEEC----TTSCTTCTTCCEEECCSSCCSEE--CT-----T-TBTTCTTCCEEECCSSCCSCC-CGG-------G
T ss_pred             C-CcCCccC----hhhccccccCCEEECCCCccceE--CH-----H-HhcCcccCCEEECCCCcCcee-CHh-------H
Confidence            5 4444322    23457889999999987765543  34     2 456789999999998843211 111       1


Q ss_pred             HhhhccccceeecCC
Q 009616          450 LFWIFYPKNLCLSPE  464 (531)
Q Consensus       450 L~~~~~l~~l~l~~~  464 (531)
                      +-.++.+++|.+..-
T Consensus       316 ~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          316 FHSVGNLETLILDSN  330 (477)
T ss_dssp             BSCGGGCCEEECCSS
T ss_pred             cCCCcccCEEEccCC
Confidence            223467888888543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=1.9e-18  Score=170.56  Aligned_cols=240  Identities=15%  Similarity=0.053  Sum_probs=139.6

Q ss_pred             cCCcEEEEeeecCCCccc--cCCccccCCCCccEEEecC-CcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCc
Q 009616          134 NGVKELDFEVITDKNSVN--ALPQTIFSAKLLTSLKLFG-CKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR  208 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~--~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~  208 (531)
                      .+|++|+++.  . ....  .+|..+..+++|++|+|++ |.+.+  |..++++++|++|+|++|.+.+. ++..++.++
T Consensus        50 ~~l~~L~L~~--~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSG--L-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEEC--C-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCT
T ss_pred             ceEEEEECCC--C-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCC
Confidence            3577777765  2 1112  5777777788888888874 66665  66677788888888888777432 344466777


Q ss_pred             ccceEEeeecCCcceee--ccccccccEEEEEeec--cccceeeeeCC-cccEEEecccc--ccceeeccCCCCccEEEE
Q 009616          209 VLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY--QELESVEIAVP-SLQQLELSFSR--VPRLLDVAECPHLRKLVL  281 (531)
Q Consensus       209 ~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~--~~l~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L  281 (531)
                      +|++|++++|...+.++  +.++++|++|++++|.  +.++.....++ +|++|++++|.  +..+..++.++ |+.|++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            77777777776543322  3456667777766665  12222223344 66666666665  34444555554 666666


Q ss_pred             eCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCC
Q 009616          282 FLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAP  361 (531)
Q Consensus       282 ~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~  361 (531)
                      ++|.+++ ..+..+.++++|+.|+|++|...                                      +..| .+..++
T Consensus       205 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~--------------------------------------~~~~-~~~~l~  244 (313)
T 1ogq_A          205 SRNMLEG-DASVLFGSDKNTQKIHLAKNSLA--------------------------------------FDLG-KVGLSK  244 (313)
T ss_dssp             CSSEEEE-CCGGGCCTTSCCSEEECCSSEEC--------------------------------------CBGG-GCCCCT
T ss_pred             cCCcccC-cCCHHHhcCCCCCEEECCCCcee--------------------------------------eecC-cccccC
Confidence            6666553 23344555666666666654310                                      0111 123355


Q ss_pred             CCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          362 CPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       362 ~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      +|++|+++. +.+.+    .++..+.++++|+.|+++.|...+.  +|       ....+++|+.+++..|
T Consensus       245 ~L~~L~Ls~-N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~--ip-------~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          245 NLNGLDLRN-NRIYG----TLPQGLTQLKFLHSLNVSFNNLCGE--IP-------QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             TCCEEECCS-SCCEE----CCCGGGGGCTTCCEEECCSSEEEEE--CC-------CSTTGGGSCGGGTCSS
T ss_pred             CCCEEECcC-CcccC----cCChHHhcCcCCCEEECcCCccccc--CC-------CCccccccChHHhcCC
Confidence            666666663 32222    2233456677777777776666555  55       3456677777777766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=3.5e-18  Score=185.11  Aligned_cols=300  Identities=10%  Similarity=0.064  Sum_probs=207.7

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCc-CCC---CcCCCCC------CccCEEEeeeEEechHhHHH-
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PSHCANL------QSLKKLSLDEVYVNDQMVQS-  202 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~~~~~l------~~L~~L~L~~~~~~~~~l~~-  202 (531)
                      +++++|+++.   +.....+|..+.++++|++|+|++|. +.+   |..++.+      ++|++|++++|.++  .++. 
T Consensus       249 ~~L~~L~L~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~  323 (636)
T 4eco_A          249 KDLTDVEVYN---CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE  323 (636)
T ss_dssp             TTCCEEEEEC---CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred             CCCCEEEecC---CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence            5899999986   33456789999999999999999998 774   5555555      99999999999986  3555 


Q ss_pred             -HHhCCcccceEEeeecCCcceee-ccccccccEEEEEeec-cccceeeeeCCc-ccEEEecccc-ccceeeccCCC--C
Q 009616          203 -LVRECRVLEDLSFFYCFGLKRLR-ISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP--H  275 (531)
Q Consensus       203 -~l~~~~~Le~L~L~~c~~~~~l~-~~~l~~L~~L~l~~~~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~~~--~  275 (531)
                       .++++++|++|++++|...+.++ +..+++|+.|++++|. ..++.....+++ |++|++++|. ...|..++..+  +
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence             78999999999999998765553 4467899999999987 434444456788 9999999998 55565666544  8


Q ss_pred             ccEEEEeCCCCChhhhhhhhc-------CCCCCcEEEeccccc--hh-HHHhcCcccceeccccccchhhhcccC-----
Q 009616          276 LRKLVLFLPHFNDQEFHPLIS-------KFPLLEDLSIISLET--LE-RIMISSNRLMHLEVYNCSGLNRINVDA-----  340 (531)
Q Consensus       276 L~~L~L~~~~~~~~~~~~~l~-------~~~~L~~L~L~~c~~--l~-~l~~~~~~L~~L~l~~c~~L~~l~~~~-----  340 (531)
                      |+.|++++|.+++. .+..+.       .+++|+.|+|++|..  +. .+....++|+.|++.++. +..+....     
T Consensus       404 L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~  481 (636)
T 4eco_A          404 MSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN  481 (636)
T ss_dssp             EEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT
T ss_pred             cCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc
Confidence            99999999988853 333344       667899999988753  21 222335778888887643 22222111     


Q ss_pred             ------CCcceeEeecCCc---Cceec--CCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeee----eeee
Q 009616          341 ------PNLVSFDFEDNPI---PIVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY----KQVL  405 (531)
Q Consensus       341 ------~nL~sl~~~~~~~---p~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~----~~~~  405 (531)
                            ++|+.+.+.+..+   |..+.  .+++|+.|++++ +.+.+     ++..+.++++|+.|+++.|.    +...
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred             ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC-CCCCC-----cChhhhcCCCCCEEECCCCcccccCccc
Confidence                  1556666555443   54554  788999999985 44443     23445678999999986432    2222


Q ss_pred             eeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecC
Q 009616          406 FNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSP  463 (531)
Q Consensus       406 ~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~  463 (531)
                      ..+|+      .+..+++|++|+|+.|.. +..+..        +.  +.+++|.+..
T Consensus       556 ~~~p~------~l~~l~~L~~L~Ls~N~l-~~ip~~--------~~--~~L~~L~Ls~  596 (636)
T 4eco_A          556 REWPE------GITLCPSLTQLQIGSNDI-RKVNEK--------IT--PNISVLDIKD  596 (636)
T ss_dssp             CCCCT------TGGGCSSCCEEECCSSCC-CBCCSC--------CC--TTCCEEECCS
T ss_pred             ccChH------HHhcCCCCCEEECCCCcC-CccCHh--------Hh--CcCCEEECcC
Confidence            22662      556678999999998844 222222        11  5678888843

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.71  E-value=5.1e-18  Score=183.00  Aligned_cols=82  Identities=16%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      +++++|+++.  +  ....+ |..+.++++|++|+|++|.+.+  +..++++++|++|++++|.+....++..++++++|
T Consensus        80 ~~L~~L~Ls~--n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  155 (606)
T 3vq2_A           80 HHLSNLILTG--N--PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL  155 (606)
T ss_dssp             TTCCEEECTT--C--CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred             hhcCEeECCC--C--cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence            3566666653  1  12223 5555666666666666666654  24455666666666666655332234445566666


Q ss_pred             ceEEeeecC
Q 009616          211 EDLSFFYCF  219 (531)
Q Consensus       211 e~L~L~~c~  219 (531)
                      ++|++++|.
T Consensus       156 ~~L~Ls~n~  164 (606)
T 3vq2_A          156 VHVDLSYNY  164 (606)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEccCCc
Confidence            666666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=9.6e-17  Score=167.36  Aligned_cols=288  Identities=14%  Similarity=0.136  Sum_probs=186.7

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      +++++|+++.    .....++. +..+++|++|++++|.+.+.+.+.++++|++|++++|.+.+  ++. ++.+++|++|
T Consensus        90 ~~L~~L~l~~----n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L  161 (466)
T 1o6v_A           90 TKLVDILMNN----NQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISA-LSGLTSLQQL  161 (466)
T ss_dssp             TTCCEEECCS----SCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC--CGG-GTTCTTCSEE
T ss_pred             ccCCEEECCC----CccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC--Chh-hccCCcccEe
Confidence            5789998875    23344555 78899999999999999884448899999999999999854  222 6789999999


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (531)
                      ++.++ ......+.++++|+.|++++|. ..+.. ...+++|++|++++|.......++.+++|+.|++++|.+++-   
T Consensus       162 ~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---  236 (466)
T 1o6v_A          162 SFGNQ-VTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---  236 (466)
T ss_dssp             EEEES-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---
T ss_pred             ecCCc-ccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---
Confidence            98643 3333346678889999998886 22222 346788888888888722122367788888888888887752   


Q ss_pred             hhhcCCCCCcEEEeccccchhHH-HhcCcccceecccccc--chhhhcccCCCcceeEeecCCcC--ceecCCCCCcEEE
Q 009616          293 PLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVL  367 (531)
Q Consensus       293 ~~l~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~c~--~L~~l~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~L~  367 (531)
                      ..+..+++|+.|++++|..-... ...+++|+.|++.++.  .+.. ....++|+.+.+.+..+.  ..+..+++|+.|+
T Consensus       237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  315 (466)
T 1o6v_A          237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLT  315 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence            23567788888888887531111 2235677777776642  1111 123355666666555442  2255677888888


Q ss_pred             EEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHH
Q 009616          368 FSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILL  447 (531)
Q Consensus       368 l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~  447 (531)
                      +++ +.+.+...      +..+++|+.|+++.|....   ++       .+..+++|++|+++.|...+.     ..   
T Consensus       316 L~~-n~l~~~~~------~~~l~~L~~L~l~~n~l~~---~~-------~l~~l~~L~~L~l~~n~l~~~-----~~---  370 (466)
T 1o6v_A          316 LYF-NNISDISP------VSSLTKLQRLFFYNNKVSD---VS-------SLANLTNINWLSAGHNQISDL-----TP---  370 (466)
T ss_dssp             CCS-SCCSCCGG------GGGCTTCCEEECCSSCCCC---CG-------GGTTCTTCCEEECCSSCCCBC-----GG---
T ss_pred             CcC-CcCCCchh------hccCccCCEeECCCCccCC---ch-------hhccCCCCCEEeCCCCccCcc-----ch---
Confidence            875 44333211      4677888888777554332   22       355667788888877633222     11   


Q ss_pred             HhHhhhccccceeec
Q 009616          448 DDLFWIFYPKNLCLS  462 (531)
Q Consensus       448 ~~L~~~~~l~~l~l~  462 (531)
                        +...+.++.|.+.
T Consensus       371 --~~~l~~L~~L~l~  383 (466)
T 1o6v_A          371 --LANLTRITQLGLN  383 (466)
T ss_dssp             --GTTCTTCCEEECC
T ss_pred             --hhcCCCCCEEecc
Confidence              3345566777663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.69  E-value=1.3e-17  Score=179.88  Aligned_cols=274  Identities=18%  Similarity=0.175  Sum_probs=194.0

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      +++++|+++.    .....+|..+..+++|++|++++|.+.+  +..+.++++|++|++++|.+........+..+++|+
T Consensus       278 ~~L~~L~l~~----n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          278 SGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCSEEECTT----SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             cCCCEEeccC----CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            4788888875    2345889999999999999999999987  567889999999999999774333333477899999


Q ss_pred             eEEeeecCCccee----eccccccccEEEEEeec-c-ccceeeeeCCcccEEEecccc--ccc-eeeccCCCCccEEEEe
Q 009616          212 DLSFFYCFGLKRL----RISEAHKLKSLILRFTY-Q-ELESVEIAVPSLQQLELSFSR--VPR-LLDVAECPHLRKLVLF  282 (531)
Q Consensus       212 ~L~L~~c~~~~~l----~~~~l~~L~~L~l~~~~-~-~l~~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~~L~~L~L~  282 (531)
                      +|++++|...+..    .+.++++|++|++++|. . ..+.....+++|++|++++|.  +.. +..+..+++|+.|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            9999999865433    35578999999999996 2 222333468999999999998  332 3348899999999999


Q ss_pred             CCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCC
Q 009616          283 LPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPC  362 (531)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~  362 (531)
                      +|.+++ ..+..+.++++|+.|++++|.........     .-.+..+++|+.+.++.+++..      ..|..+..+++
T Consensus       434 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~  501 (606)
T 3t6q_A          434 HSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQK-----TNSLQTLGRLEILVLSFCDLSS------IDQHAFTSLKM  501 (606)
T ss_dssp             TCCCBT-TCTTTTTTCTTCCEEECTTCBCGGGEECS-----SCGGGGCTTCCEEECTTSCCCE------ECTTTTTTCTT
T ss_pred             CCccCC-cCHHHHhCCCCCCEEECCCCCCCcccccc-----chhhccCCCccEEECCCCccCc------cChhhhccccC
Confidence            999874 34566788999999999998632210000     0112334455555555544422      12456678899


Q ss_pred             CcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccC
Q 009616          363 PLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMD  437 (531)
Q Consensus       363 L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~  437 (531)
                      |+.|++++ +.+.+.    .+..+.++++| .|+++.|.....  .| .     .+..+++|+.|+++.|....+
T Consensus       502 L~~L~Ls~-N~l~~~----~~~~l~~l~~L-~L~L~~N~l~~~--~~-~-----~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          502 MNHVDLSH-NRLTSS----SIEALSHLKGI-YLNLASNHISII--LP-S-----LLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             CCEEECCS-SCCCGG----GGGGGTTCCSC-EEECCSSCCCCC--CG-G-----GHHHHHTSSEEECTTCCEECS
T ss_pred             CCEEECCC-CccCcC----ChhHhCccccc-EEECcCCccccc--CH-h-----hcccCCCCCEEeCCCCCcccc
Confidence            99999985 444432    23445677777 777776655432  33 1     234578999999998855444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=3e-17  Score=163.01  Aligned_cols=148  Identities=22%  Similarity=0.263  Sum_probs=118.7

Q ss_pred             CCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEE
Q 009616          160 AKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLI  236 (531)
Q Consensus       160 ~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~  236 (531)
                      ..++++|+|++|.+.. |..++++++|++|+|++|.+.  .++..++.+++|++|+|++|... .++  +.++++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            4789999999999988 788889999999999999886  35566789999999999999764 332  55789999999


Q ss_pred             EEeec--cccceee---------eeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          237 LRFTY--QELESVE---------IAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       237 l~~~~--~~l~~~~---------~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                      +++|.  +.++...         ..+++|++|++++|. ...|..++.+++|+.|++++|.+++  ++..+.++++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence            99987  3333222         248899999999988 6666778889999999999998884  33447788899999


Q ss_pred             Eeccccch
Q 009616          305 SIISLETL  312 (531)
Q Consensus       305 ~L~~c~~l  312 (531)
                      +|++|...
T Consensus       235 ~Ls~n~~~  242 (328)
T 4fcg_A          235 DLRGCTAL  242 (328)
T ss_dssp             ECTTCTTC
T ss_pred             ECcCCcch
Confidence            99887643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.3e-17  Score=184.59  Aligned_cols=301  Identities=11%  Similarity=0.046  Sum_probs=205.5

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCc-CCC---CcCC-------CCCCccCEEEeeeEEechHhHH
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCK-LEQ---PSHC-------ANLQSLKKLSLDEVYVNDQMVQ  201 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~---~~~~-------~~l~~L~~L~L~~~~~~~~~l~  201 (531)
                      .++++.|+|+.   +.....+|..+.++++|++|+|++|+ +.+   |..+       ..+++|++|+|++|.+.  .++
T Consensus       490 L~~L~~L~Ls~---N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip  564 (876)
T 4ecn_A          490 LKDLTDVELYN---CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFP  564 (876)
T ss_dssp             CTTCCEEEEES---CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCC
T ss_pred             CCCCCEEECcC---CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccC
Confidence            35899999986   33456789999999999999999998 764   4333       34569999999999986  455


Q ss_pred             H--HHhCCcccceEEeeecCCccee-eccccccccEEEEEeec-cccceeeeeCCc-ccEEEecccc-ccceeeccCCC-
Q 009616          202 S--LVRECRVLEDLSFFYCFGLKRL-RISEAHKLKSLILRFTY-QELESVEIAVPS-LQQLELSFSR-VPRLLDVAECP-  274 (531)
Q Consensus       202 ~--~l~~~~~Le~L~L~~c~~~~~l-~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~~~-  274 (531)
                      .  .++++++|+.|+|++|... .+ .+.++++|+.|++++|. ..++.....+++ |+.|++++|. ...|..+..++ 
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~  643 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV  643 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred             ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence            5  7899999999999999765 43 45578899999999997 444444456788 9999999998 55565666654 


Q ss_pred             -CccEEEEeCCCCChhhhhhh---hc--CCCCCcEEEeccccc--hh-HHHhcCcccceeccccccchhhhccc---C--
Q 009616          275 -HLRKLVLFLPHFNDQEFHPL---IS--KFPLLEDLSIISLET--LE-RIMISSNRLMHLEVYNCSGLNRINVD---A--  340 (531)
Q Consensus       275 -~L~~L~L~~~~~~~~~~~~~---l~--~~~~L~~L~L~~c~~--l~-~l~~~~~~L~~L~l~~c~~L~~l~~~---~--  340 (531)
                       +|+.|++++|.+++. ++.+   +.  .+++|+.|+|++|..  +. .+...+++|+.|++.++. +..+...   .  
T Consensus       644 ~~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~  721 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKD  721 (876)
T ss_dssp             SCEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTT
T ss_pred             CCCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhcccc
Confidence             499999999988753 2221   11  345888999988754  22 222345778888887642 2222111   1  


Q ss_pred             ------CCcceeEeecCCc---Cceec--CCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeee----eeee
Q 009616          341 ------PNLVSFDFEDNPI---PIVST--NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNY----KQVL  405 (531)
Q Consensus       341 ------~nL~sl~~~~~~~---p~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~----~~~~  405 (531)
                            ++|+.+.+.+..+   |..+.  .+++|+.|++++ +.+.+     ++..+.++++|+.|+|+.|.    +...
T Consensus       722 ~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY-NCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             SCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS-SCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             ccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC-CCCCc-----cchhhhcCCCCCEEECCCCCCccccccc
Confidence                  1566666655443   55554  788999999985 44443     23446688999999987633    2222


Q ss_pred             eeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616          406 FNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE  464 (531)
Q Consensus       406 ~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~  464 (531)
                      ..+|      ..+..+++|++|+|+.|.. +..+.. +         .+.++.|.+...
T Consensus       796 ~~ip------~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l---------~~~L~~LdLs~N  837 (876)
T 4ecn_A          796 RQWP------TGITTCPSLIQLQIGSNDI-RKVDEK-L---------TPQLYILDIADN  837 (876)
T ss_dssp             CCCC------TTGGGCSSCCEEECCSSCC-CBCCSC-C---------CSSSCEEECCSC
T ss_pred             ccCh------HHHhcCCCCCEEECCCCCC-CccCHh-h---------cCCCCEEECCCC
Confidence            2266      2566678999999998844 222222 1         146788888443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=1.6e-17  Score=172.43  Aligned_cols=251  Identities=15%  Similarity=0.065  Sum_probs=109.7

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      +..+++|++|++++|.+.+. .++++++|++|++++|.+++  ++  ++.+++|++|++++|...+ +.+.++++|+.|+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~  154 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELD  154 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEE
T ss_pred             cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEE
Confidence            44555555555555555542 14455555555555555532  11  4455555555555554322 3344445555555


Q ss_pred             EEeecccccee-eeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhH
Q 009616          237 LRFTYQELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLER  314 (531)
Q Consensus       237 l~~~~~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~  314 (531)
                      +++|. ....+ ...+++|++|++++|. ...+  ++.+++|+.|++++|.+++.    -+..+++|+.|++++|..-. 
T Consensus       155 l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          155 CHLNK-KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             CTTCS-CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-
T ss_pred             CCCCC-cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-
Confidence            55443 11111 1134445555554444 2221  44444444444444444431    13344444444444432110 


Q ss_pred             H-HhcCcccceeccc----------cccchhhhcccCCCcceeEeecCCcC--ceecCCCCCcEEEEEeeccCChhhhhh
Q 009616          315 I-MISSNRLMHLEVY----------NCSGLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLN  381 (531)
Q Consensus       315 l-~~~~~~L~~L~l~----------~c~~L~~l~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~  381 (531)
                      + ...+++|+.|++.          .+++|+.+.+..++|+.+.+.+....  ...+.+++|+.|+++. +...+.....
T Consensus       227 ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~-n~~l~~l~~~  305 (457)
T 3bz5_A          227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH-NTQLYLLDCQ  305 (457)
T ss_dssp             CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTT-CTTCCEEECT
T ss_pred             cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCC-CcccceeccC
Confidence            0 0112233333322          23444444444555555554443321  2234556677776653 2111110000


Q ss_pred             ---HH-HHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          382 ---LM-EFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       382 ---l~-~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                         +. --++++++|+.|+++.|...+   +        .+..+++|+.|+++.|.
T Consensus       306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~---l--------~l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          306 AAGITELDLSQNPKLVYLYLNNTELTE---L--------DVSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCCCSC---C--------CCTTCTTCSEEECCSSC
T ss_pred             CCcceEechhhcccCCEEECCCCcccc---c--------ccccCCcCcEEECCCCC
Confidence               00 013344566666665444332   1        24556777777777663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=9.7e-17  Score=170.86  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=70.9

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      ++++|+++.  + ......|..+..+++|++|+|++|.+.+  +..++++++|++|+|++|.+.+ ..+..++++++|++
T Consensus        27 ~L~~L~Ls~--n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~  102 (549)
T 2z81_A           27 AMKSLDLSF--N-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKY  102 (549)
T ss_dssp             TCCEEECCS--S-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCE
T ss_pred             CccEEECcC--C-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcE
Confidence            556666554  1 1111223445556666666666666555  3445556666666666665532 12333556666666


Q ss_pred             EEeeecCCcc-e--eeccccccccEEEEEeec--cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616          213 LSFFYCFGLK-R--LRISEAHKLKSLILRFTY--QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       213 L~L~~c~~~~-~--l~~~~l~~L~~L~l~~~~--~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      |++++|...+ .  -.+.++++|++|++++|.  +.++. ....+++|++|++++|.  +..+..++.+++|+.|+++.+
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            6666654322 1  123345566666666554  11111 12245555566655555  223333444444444444433


Q ss_pred             C
Q 009616          285 H  285 (531)
Q Consensus       285 ~  285 (531)
                      .
T Consensus       183 ~  183 (549)
T 2z81_A          183 E  183 (549)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=2.1e-16  Score=158.59  Aligned_cols=247  Identities=16%  Similarity=0.136  Sum_probs=126.6

Q ss_pred             CccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEE
Q 009616          162 LLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLIL  237 (531)
Q Consensus       162 ~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l  237 (531)
                      +|++|++++|.+.+ + ..+.++++|++|++++|.+++. .+..++++++|++|++++|...+...  +.++++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            55555555555544 2 2345555555555555544221 12224455555555555554322111  234455555555


Q ss_pred             Eeec-cccce--eeeeCCcccEEEecccc--cc-ceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          238 RFTY-QELES--VEIAVPSLQQLELSFSR--VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       238 ~~~~-~~l~~--~~~~~~~L~~L~l~~~~--~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      ++|. ..++.  ....+++|++|++++|.  .. .+..++++++|+.|++++|.+++ ..+..+.++++|+.|+++++..
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccCCeecCCCCcc
Confidence            5554 22222  22245556666665552  11 12345556666666666666553 2233455566666666665542


Q ss_pred             --hhHH-HhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhh
Q 009616          312 --LERI-MISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA  388 (531)
Q Consensus       312 --l~~l-~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~  388 (531)
                        +... ....++|+.|++.++           ++..+....  + ......+.++.+++.. +.+.+.....++..+.+
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n-----------~l~~~~~~~--l-~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l~~  275 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDT-----------DLDTFHFSE--L-STGETNSLIKKFTFRN-VKITDESLFQVMKLLNQ  275 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESC-----------BCTTCCCC---------CCCCCCEEEEES-CBCCHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhcccccEEECCCC-----------ccccccccc--c-ccccccchhhcccccc-ccccCcchhhhHHHHhc
Confidence              1110 111233444433332           111110000  0 0112356678888885 55666555567778899


Q ss_pred             ccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          389 FNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       389 l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                      +++|+.|+++.|...  . +|..+     +..+++|++|+|+.|.
T Consensus       276 l~~L~~L~Ls~N~l~--~-i~~~~-----~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          276 ISGLLELEFSRNQLK--S-VPDGI-----FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CTTCCEEECCSSCCC--C-CCTTT-----TTTCTTCCEEECCSSC
T ss_pred             ccCCCEEECCCCCCC--c-cCHHH-----HhcCCCCCEEEeeCCC
Confidence            999999999877655  2 67222     3568999999999983

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=3.9e-17  Score=166.26  Aligned_cols=267  Identities=18%  Similarity=0.114  Sum_probs=121.2

Q ss_pred             CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee---cccccccc
Q 009616          159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLK  233 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~~L~  233 (531)
                      .+++|++|+|++|.+.+  +..+.++++|++|+|++|.+... .+..++++++|++|++++|... .++   +.++++|+
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT  144 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCc
Confidence            34555555555555444  22444555555555555544221 1222344555555555555332 111   22345555


Q ss_pred             EEEEEeec-cccc-eeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          234 SLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       234 ~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +|++++|. ..+. .....+++|++|++++|. ...  .++.+++|+.|+++++.++.      +...++|+.|+++++.
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~  216 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNS  216 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc------cCCCCcceEEECCCCe
Confidence            55555543 1111 112234555555555554 111  23444555555555544442      1122345555554432


Q ss_pred             chhHHHhcCcccceecccccc--chhhhcccCCCcceeEeecCCc----CceecCCCCCcEEEEEeeccCChhhhhhHHH
Q 009616          311 TLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLME  384 (531)
Q Consensus       311 ~l~~l~~~~~~L~~L~l~~c~--~L~~l~~~~~nL~sl~~~~~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  384 (531)
                      .-..-....++|+.|++.++.  ....+ -..++|+.+.+.+..+    |..+..+++|+.|++++ +.+...     +.
T Consensus       217 l~~~~~~~~~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~-----~~  289 (390)
T 3o6n_A          217 INVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVAL-----NL  289 (390)
T ss_dssp             CCEEECCCCSSCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEE-----EC
T ss_pred             eeeccccccccccEEECCCCCCcccHHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCccc-----Cc
Confidence            110000011233333333321  00000 1123333333333322    34566778888888875 433331     11


Q ss_pred             HHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeec
Q 009616          385 FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLS  462 (531)
Q Consensus       385 ~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~  462 (531)
                      ....+++|+.|+++.|...  . +|+      .+..+++|++|++..|...    ..       .+-..+.+++|.+.
T Consensus       290 ~~~~l~~L~~L~L~~n~l~--~-~~~------~~~~l~~L~~L~L~~N~i~----~~-------~~~~~~~L~~L~l~  347 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLL--H-VER------NQPQFDRLENLYLDHNSIV----TL-------KLSTHHTLKNLTLS  347 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCC--C-CGG------GHHHHTTCSEEECCSSCCC----CC-------CCCTTCCCSEEECC
T ss_pred             ccCCCCCCCEEECCCCcce--e-cCc------cccccCcCCEEECCCCccc----ee-------CchhhccCCEEEcC
Confidence            2256778888888766543  2 552      3445678888888877321    11       12334567777773

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=1.5e-17  Score=173.13  Aligned_cols=323  Identities=16%  Similarity=0.118  Sum_probs=194.4

Q ss_pred             HHHcCCcEEEEeeecCCCcc---ccCCccccCCCCccEEEecCCcCCC--CcC-CCCCC----ccCEEEeeeEEech---
Q 009616          131 AMENGVKELDFEVITDKNSV---NALPQTIFSAKLLTSLKLFGCKLEQ--PSH-CANLQ----SLKKLSLDEVYVND---  197 (531)
Q Consensus       131 ~~~~~l~~L~L~~~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~--~~~-~~~l~----~L~~L~L~~~~~~~---  197 (531)
                      ...+++++|+++.  +....   ..++..+..+++|++|+|++|.+..  +.. ...++    +|++|+|++|.+++   
T Consensus        25 ~~~~~L~~L~L~~--~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhcCCccEEEccC--CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            3446888888876  22211   1456667778888888888887754  211 12344    68888888888754   


Q ss_pred             HhHHHHHhCCcccceEEeeecCCcce----ee---ccccccccEEEEEeec-cc-----cceeeeeCCcccEEEecccc-
Q 009616          198 QMVQSLVRECRVLEDLSFFYCFGLKR----LR---ISEAHKLKSLILRFTY-QE-----LESVEIAVPSLQQLELSFSR-  263 (531)
Q Consensus       198 ~~l~~~l~~~~~Le~L~L~~c~~~~~----l~---~~~l~~L~~L~l~~~~-~~-----l~~~~~~~~~L~~L~l~~~~-  263 (531)
                      ..++..+..+++|++|++++|.....    +.   ....++|++|++++|. ..     +......+++|++|++++|. 
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            24566678888888888888874221    00   1123578888888876 11     12222356888888888887 


Q ss_pred             cc-ceeecc-----CCCCccEEEEeCCCCChhh---hhhhhcCCCCCcEEEeccccch----hHH----HhcCcccceec
Q 009616          264 VP-RLLDVA-----ECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLETL----ERI----MISSNRLMHLE  326 (531)
Q Consensus       264 ~~-~~~~~~-----~~~~L~~L~L~~~~~~~~~---~~~~l~~~~~L~~L~L~~c~~l----~~l----~~~~~~L~~L~  326 (531)
                      .. ....+.     ..++|+.|+++++.+++..   +...+..+++|+.|++++|..-    ..+    ....++|++|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            11 111121     3568888888888877642   4555667788888888887431    111    11356788888


Q ss_pred             cccccchhh-----hc---ccCCCcceeEeecCCcC----ceec-----CCCCCcEEEEEeeccCChhhhhhHHHHHhhc
Q 009616          327 VYNCSGLNR-----IN---VDAPNLVSFDFEDNPIP----IVST-----NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF  389 (531)
Q Consensus       327 l~~c~~L~~-----l~---~~~~nL~sl~~~~~~~p----~~~~-----~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l  389 (531)
                      +.+|. +..     +.   -..++|+.+.+.+..+.    ..+.     +.++|+.|++++ +.+.......++..+..+
T Consensus       263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~  340 (461)
T 1z7x_W          263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CSFTAACCSHFSSVLAQN  340 (461)
T ss_dssp             CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHC
T ss_pred             CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-CCCchHHHHHHHHHHhhC
Confidence            87762 322     11   12567777777766542    1111     235888888875 555555455566777788


Q ss_pred             cccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616          390 NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE  464 (531)
Q Consensus       390 ~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~  464 (531)
                      ++|+.|+++.|......  +..+... -....++|++|+|+.|    .........+...+-.+++++.|.+...
T Consensus       341 ~~L~~L~Ls~n~i~~~~--~~~l~~~-l~~~~~~L~~L~L~~n----~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAG--VRELCQG-LGQPGSVLRVLWLADC----DVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             SSCCEEECCSSBCHHHH--HHHHHHH-HTSTTCCCCEEECTTS----CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             CCccEEEccCCcccccc--HHHHHHH-HcCCCCceEEEECCCC----CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            88888888766544321  1111111 0112467888888877    2333334455566666777888887443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=5.9e-16  Score=173.16  Aligned_cols=192  Identities=16%  Similarity=0.121  Sum_probs=114.0

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcC--CCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSH--CANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~  209 (531)
                      ++++.|+|+.   .......|..+.++++|++|+|++|.+.+  +..  ++++++|++|+|++|.+.+..++..++++++
T Consensus        73 ~~L~~L~Ls~---N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           73 PNLRILDLGS---SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             TTCCEEECTT---CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             CCCCEEECCC---CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            3677777764   12223346677777888888888887765  333  6778888888888877744333344677788


Q ss_pred             cceEEeeecCCcce---------------ee-------------ccccc------cccEEEEEeec--cccc--------
Q 009616          210 LEDLSFFYCFGLKR---------------LR-------------ISEAH------KLKSLILRFTY--QELE--------  245 (531)
Q Consensus       210 Le~L~L~~c~~~~~---------------l~-------------~~~l~------~L~~L~l~~~~--~~l~--------  245 (531)
                      |++|+|++|...+.               +.             +..++      +|+.|++++|.  ....        
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            88888877753111               00             01112      26666666653  0000        


Q ss_pred             -----eeee-------------------------eCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhh
Q 009616          246 -----SVEI-------------------------AVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHP  293 (531)
Q Consensus       246 -----~~~~-------------------------~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (531)
                           .+..                         ..++|+.|++++|.  ...+..++.+++|+.|+|++|.+++ ..+.
T Consensus       230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~  308 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADE  308 (844)
T ss_dssp             SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTT
T ss_pred             cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChH
Confidence                 0000                         02567778887776  3334567788888888888888874 3344


Q ss_pred             hhcCCCCCcEEEeccccchh---HHHhcCcccceecccc
Q 009616          294 LISKFPLLEDLSIISLETLE---RIMISSNRLMHLEVYN  329 (531)
Q Consensus       294 ~l~~~~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~  329 (531)
                      .+.++++|+.|+|++|..-.   ......++|+.|++.+
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            56778888888888774311   1112235666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=6.7e-17  Score=172.84  Aligned_cols=249  Identities=13%  Similarity=0.112  Sum_probs=154.4

Q ss_pred             CCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecccccc
Q 009616          153 LPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHK  231 (531)
Q Consensus       153 lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~  231 (531)
                      +|..+..+++|++|++++|.+.. |..+..+ +|++|++++|.+..  ++.  ..+++|++|++.+|..........+++
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCC
Confidence            45556667788888888877766 6666666 88888888777642  222  467788888888777655555556778


Q ss_pred             ccEEEEEeec-ccc---ceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEe
Q 009616          232 LKSLILRFTY-QEL---ESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSI  306 (531)
Q Consensus       232 L~~L~l~~~~-~~l---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L  306 (531)
                      |+.|++++|. ...   +.....+++|++|++++|. ...+..+..+++|+.|++++|.+++......+.++++|+.|++
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            8888887775 221   1122357788888888877 3344447778888888887777765433345667788888888


Q ss_pred             ccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHH
Q 009616          307 ISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFI  386 (531)
Q Consensus       307 ~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l  386 (531)
                      ++|.........        +.++++|+.+.++.+.+     .++.+|..+..+++|+.|++++ +.+.+.    .+..+
T Consensus       429 ~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l-----~~~~~p~~~~~l~~L~~L~l~~-n~l~~~----~~~~~  490 (570)
T 2z63_A          429 SHTHTRVAFNGI--------FNGLSSLEVLKMAGNSF-----QENFLPDIFTELRNLTFLDLSQ-CQLEQL----SPTAF  490 (570)
T ss_dssp             TTSCCEECCTTT--------TTTCTTCCEEECTTCEE-----GGGEECSCCTTCTTCCEEECTT-SCCCEE----CTTTT
T ss_pred             cCCcccccchhh--------hhcCCcCcEEECcCCcC-----ccccchhhhhcccCCCEEECCC-CccccC----Chhhh
Confidence            776432111100        11223333333333222     1123455666788889998874 333332    22345


Q ss_pred             hhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          387 GAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       387 ~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      .++++|+.|+++.|....   +|+    . .+..+++|++|+++.|
T Consensus       491 ~~l~~L~~L~l~~n~l~~---~~~----~-~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          491 NSLSSLQVLNMASNQLKS---VPD----G-IFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             TTCTTCCEEECCSSCCSC---CCT----T-TTTTCTTCCEEECCSS
T ss_pred             hcccCCCEEeCCCCcCCC---CCH----H-HhhcccCCcEEEecCC
Confidence            678888888888665443   331    1 3556788888888888

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.66  E-value=1.5e-17  Score=173.19  Aligned_cols=316  Identities=16%  Similarity=0.083  Sum_probs=187.4

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEechHhHHHHHhCCc
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR  208 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~  208 (531)
                      .+++|+++.  .......+...+..+++|++|+|++|.+..      +..+..+++|++|+|++|.+++..+..+...++
T Consensus         4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            4 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             cceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            567788865  222222233335568899999999998874      344567899999999999987666777766676


Q ss_pred             ----ccceEEeeecCCcc----e--eeccccccccEEEEEeec-c--ccceee----eeCCcccEEEecccc-cc-----
Q 009616          209 ----VLEDLSFFYCFGLK----R--LRISEAHKLKSLILRFTY-Q--ELESVE----IAVPSLQQLELSFSR-VP-----  265 (531)
Q Consensus       209 ----~Le~L~L~~c~~~~----~--l~~~~l~~L~~L~l~~~~-~--~l~~~~----~~~~~L~~L~l~~~~-~~-----  265 (531)
                          +|++|+|++|....    .  -.+.++++|++|++++|. .  ....+.    ...++|++|++++|. ..     
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                79999999997542    1  224567899999999886 1  111111    124679999999997 21     


Q ss_pred             ceeeccCCCCccEEEEeCCCCChhhhhhhhc----CCCCCcEEEeccccch-------hHHHhcCcccceeccccccchh
Q 009616          266 RLLDVAECPHLRKLVLFLPHFNDQEFHPLIS----KFPLLEDLSIISLETL-------ERIMISSNRLMHLEVYNCSGLN  334 (531)
Q Consensus       266 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~----~~~~L~~L~L~~c~~l-------~~l~~~~~~L~~L~l~~c~~L~  334 (531)
                      .+..+..+++|+.|++++|.+++..+..+..    ..++|+.|++++|..-       ......+++|++|++.++. +.
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~  240 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LG  240 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CC
Confidence            2345667899999999999987654443332    4669999999998531       2222345788888888763 32


Q ss_pred             hh---------cccCCCcceeEeecCCcC--------ceecCCCCCcEEEEEeeccCChhhhhhHHHHHh-hccccceeE
Q 009616          335 RI---------NVDAPNLVSFDFEDNPIP--------IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIG-AFNQIGELH  396 (531)
Q Consensus       335 ~l---------~~~~~nL~sl~~~~~~~p--------~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~-~l~~L~~L~  396 (531)
                      ..         .-..++|+.+.+.+..+.        ..+..+++|+.|++++ +.+.......+...+. +.++|+.|+
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeE
Confidence            11         112456666666655442        1222366677777764 3332222222222221 225677776


Q ss_pred             EEeeeeeeee--eeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhh-hccccceeecCC
Q 009616          397 LSLNYKQVLF--NIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFW-IFYPKNLCLSPE  464 (531)
Q Consensus       397 L~~~~~~~~~--~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~-~~~l~~l~l~~~  464 (531)
                      ++.+......  .+|.      .+..+++|++|+++.|.    ........+...+-. .+.+++|.+...
T Consensus       320 L~~n~l~~~~~~~l~~------~l~~~~~L~~L~Ls~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSS------VLAQNRFLLELQISNNR----LEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             CTTSCCBGGGHHHHHH------HHHHCSSCCEEECCSSB----CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cCCCCCchHHHHHHHH------HHhhCCCccEEEccCCc----cccccHHHHHHHHcCCCCceEEEECCCC
Confidence            6655433221  0121      12334667777777662    112222223333322 345677776443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=178.41  Aligned_cols=281  Identities=13%  Similarity=0.044  Sum_probs=147.5

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+|+.  + ......|..+.++++|++|+|++|...+   +..+.++++|++|+|++|.+... .+..++++++|
T Consensus        24 ~~l~~LdLs~--N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSF--N-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHL   99 (844)
T ss_dssp             TTCCEEEEES--C-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSC
T ss_pred             CCcCEEECCC--C-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCccc
Confidence            3677777765  2 1222235556667777777777774443   44566777777777777766321 23345667777


Q ss_pred             ceEEeeecCCccee----eccccccccEEEEEeec-ccc--ceeeeeCCcccEEEecccc--ccceeeccCC--CCccEE
Q 009616          211 EDLSFFYCFGLKRL----RISEAHKLKSLILRFTY-QEL--ESVEIAVPSLQQLELSFSR--VPRLLDVAEC--PHLRKL  279 (531)
Q Consensus       211 e~L~L~~c~~~~~l----~~~~l~~L~~L~l~~~~-~~l--~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~--~~L~~L  279 (531)
                      ++|+|++|...+..    .+.++++|+.|++++|. ...  .....++++|++|++++|.  ...+..++.+  ++|+.|
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            77777776554321    14456777777777765 221  1223356777777777765  3333444444  666667


Q ss_pred             EEeCCCCChhhhhhhhcCCCC------CcEEEeccccchhH----HHh--------------------------------
Q 009616          280 VLFLPHFNDQEFHPLISKFPL------LEDLSIISLETLER----IMI--------------------------------  317 (531)
Q Consensus       280 ~L~~~~~~~~~~~~~l~~~~~------L~~L~L~~c~~l~~----l~~--------------------------------  317 (531)
                      ++++|.+++... ..+..+++      |+.|++++|..-..    +..                                
T Consensus       180 ~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          180 SLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             EECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             ECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            776666654222 11223332      66666666521100    000                                


Q ss_pred             -----cCcccceeccccccchhhh----cccCCCcceeEeecCCc----CceecCCCCCcEEEEEeeccCChhhhhhHHH
Q 009616          318 -----SSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLME  384 (531)
Q Consensus       318 -----~~~~L~~L~l~~c~~L~~l----~~~~~nL~sl~~~~~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  384 (531)
                           ..++|+.|++.++. +..+    --..++|+.+.+.+..+    |..+..+++|+.|+++. +.+....    +.
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~----~~  332 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELY----SS  332 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES-CCCSCCC----SC
T ss_pred             hhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC-CCCCccC----HH
Confidence                 01344444444321 1111    01224455555555443    23445566777777764 3332211    12


Q ss_pred             HHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          385 FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       385 ~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                      .+.++++|+.|+++.|....   +++    . .+..+++|++|+|+.|.
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~---~~~----~-~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAI---IQD----Q-TFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCC---CCS----S-CSCSCCCCCEEEEETCC
T ss_pred             HhcCCCCCCEEECCCCCCCc---cCh----h-hhcCCCCCCEEECCCCC
Confidence            34556677777666554322   221    1 35567888899988774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=8.2e-16  Score=164.23  Aligned_cols=143  Identities=14%  Similarity=0.053  Sum_probs=76.6

Q ss_pred             cCCCCCcEEEeccccchhHHH---hcCcccceeccccccchhhh------cccCCCcceeEeecCCc----C-ceecCCC
Q 009616          296 SKFPLLEDLSIISLETLERIM---ISSNRLMHLEVYNCSGLNRI------NVDAPNLVSFDFEDNPI----P-IVSTNAP  361 (531)
Q Consensus       296 ~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l------~~~~~nL~sl~~~~~~~----p-~~~~~~~  361 (531)
                      ..+++|+.|++++|..-..+.   ...++|+.|++.++. +..+      .-..++|+.+.+.+..+    | ..+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            455666666666654322111   123455666655432 2111      11234555555544432    3 2355678


Q ss_pred             CCcEEEEEeeccCChhhhhhHHHHHhhc-cccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCc
Q 009616          362 CPLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVP  440 (531)
Q Consensus       362 ~L~~L~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  440 (531)
                      +|+.|++++ +.+.+.       .+..+ ++|+.|+++.|...  . ||+      .+..+++|++|+|+.|.... .+.
T Consensus       429 ~L~~L~l~~-n~l~~~-------~~~~l~~~L~~L~L~~N~l~--~-ip~------~~~~l~~L~~L~L~~N~l~~-l~~  490 (562)
T 3a79_B          429 SILVLNLSS-NMLTGS-------VFRCLPPKVKVLDLHNNRIM--S-IPK------DVTHLQALQELNVASNQLKS-VPD  490 (562)
T ss_dssp             TCCEEECCS-SCCCGG-------GGSSCCTTCSEEECCSSCCC--C-CCT------TTTSSCCCSEEECCSSCCCC-CCT
T ss_pred             cCCEEECCC-CCCCcc-------hhhhhcCcCCEEECCCCcCc--c-cCh------hhcCCCCCCEEECCCCCCCC-CCH
Confidence            899999985 444332       22334 58888888866544  3 772      44567889999998874321 111


Q ss_pred             hhHHHHHHhHhhhccccceeecCC
Q 009616          441 SEYEILLDDLFWIFYPKNLCLSPE  464 (531)
Q Consensus       441 ~~~~~l~~~L~~~~~l~~l~l~~~  464 (531)
                      .       .+-..+.++.|.+..-
T Consensus       491 ~-------~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          491 G-------VFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             T-------STTTCTTCCCEECCSC
T ss_pred             H-------HHhcCCCCCEEEecCC
Confidence            1       1334456778877543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=1.4e-16  Score=171.29  Aligned_cols=310  Identities=17%  Similarity=0.164  Sum_probs=189.4

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--C----cCCCCCCccCEEEeeeEE--echHhHHHHH
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEVY--VNDQMVQSLV  204 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~~--~~~~~l~~~l  204 (531)
                      .+++++|++.... ......++.....|++|++|+|++|.+.+  +    .....+++|++|+++++.  ++...+..++
T Consensus       129 ~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          129 FKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             CTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             CCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            3588888887510 11122244445578999999999998654  1    223367899999999886  5666788888


Q ss_pred             hCCcccceEEeeecCCcceee--ccccccccEEEEEeec--------------------------------cccceeeee
Q 009616          205 RECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY--------------------------------QELESVEIA  250 (531)
Q Consensus       205 ~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~--------------------------------~~l~~~~~~  250 (531)
                      .+|++|++|++.+|..++.+.  +.++++|+.|++..+.                                ..++.+...
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            889999999999885443321  2245666666644331                                112222225


Q ss_pred             CCcccEEEecccc-c--cceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecc--------ccch-----hH
Q 009616          251 VPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIIS--------LETL-----ER  314 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~--------c~~l-----~~  314 (531)
                      +++|++|++++|. .  .....+..+++|+.|++.++ +++..+..+...+++|+.|++.+        |..+     ..
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            7889999999887 1  12223568899999999877 66666667777789999999843        3332     23


Q ss_pred             HHhcCcccceeccccccchh-----hhcccCCCcceeEee--c----CCcC---------ceecCCCCCcEEEEEeeccC
Q 009616          315 IMISSNRLMHLEVYNCSGLN-----RINVDAPNLVSFDFE--D----NPIP---------IVSTNAPCPLNVLFSNFGDI  374 (531)
Q Consensus       315 l~~~~~~L~~L~l~~c~~L~-----~l~~~~~nL~sl~~~--~----~~~p---------~~~~~~~~L~~L~l~~~~~~  374 (531)
                      +...+++|+.|.+ .|.++.     .+.-..++|+.+.+.  +    ..+.         ..+..+++|+.|+++  ...
T Consensus       367 l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~--~~l  443 (594)
T 2p1m_B          367 VSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLL  443 (594)
T ss_dssp             HHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC--SSC
T ss_pred             HHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec--Ccc
Confidence            3334678888844 444442     222245778877776  3    1111         113356788888886  222


Q ss_pred             ChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhhhc
Q 009616          375 DTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIF  454 (531)
Q Consensus       375 ~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~  454 (531)
                      ..   ..+..+...+++|+.|+++.+...... ++ .+     ...+++|++|+|+.|.    ..   -.++....-.++
T Consensus       444 ~~---~~~~~l~~~~~~L~~L~L~~~~i~~~~-~~-~l-----~~~~~~L~~L~L~~n~----~~---~~~~~~~~~~l~  506 (594)
T 2p1m_B          444 TD---KVFEYIGTYAKKMEMLSVAFAGDSDLG-MH-HV-----LSGCDSLRKLEIRDCP----FG---DKALLANASKLE  506 (594)
T ss_dssp             CH---HHHHHHHHHCTTCCEEEEESCCSSHHH-HH-HH-----HHHCTTCCEEEEESCS----CC---HHHHHHTGGGGG
T ss_pred             cH---HHHHHHHHhchhccEeeccCCCCcHHH-HH-HH-----HhcCCCcCEEECcCCC----Cc---HHHHHHHHHhCC
Confidence            22   223334445788888888876644332 22 01     1336788888888772    21   222333334456


Q ss_pred             cccceeecCC
Q 009616          455 YPKNLCLSPE  464 (531)
Q Consensus       455 ~l~~l~l~~~  464 (531)
                      ++++|.+..+
T Consensus       507 ~L~~L~l~~~  516 (594)
T 2p1m_B          507 TMRSLWMSSC  516 (594)
T ss_dssp             GSSEEEEESS
T ss_pred             CCCEEeeeCC
Confidence            7888888655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=167.53  Aligned_cols=121  Identities=17%  Similarity=0.109  Sum_probs=74.5

Q ss_pred             cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.  +  ....++ ..+..+++|++|+|++|.+.+  |..++++++|++|+|++|.+..  ++..  .+++|
T Consensus        21 ~~L~~L~Ls~--n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQ--N--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCS--S--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCC
T ss_pred             ccccEEECCC--C--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCc
Confidence            5677777764  1  223333 456677777777777777766  4566777777777777776642  3322  67777


Q ss_pred             ceEEeeecCCcc-ee--eccccccccEEEEEeeccccceeeeeCCcc--cEEEecccc
Q 009616          211 EDLSFFYCFGLK-RL--RISEAHKLKSLILRFTYQELESVEIAVPSL--QQLELSFSR  263 (531)
Q Consensus       211 e~L~L~~c~~~~-~l--~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L--~~L~l~~~~  263 (531)
                      ++|++++|...+ .+  .+.++++|++|++++|. --......+++|  +.|++++|.
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECT
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeeccc
Confidence            777777776543 12  34566777777777775 111112245566  777777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=5.5e-16  Score=163.94  Aligned_cols=296  Identities=13%  Similarity=0.053  Sum_probs=153.7

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.  +  ....+|..  .+++|++|+|++|.+.+   |..++++++|++|++++|.+.+..    +..++.|
T Consensus        69 ~~L~~L~Ls~--N--~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L  138 (520)
T 2z7x_B           69 QELEYLDLSH--N--KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHL  138 (520)
T ss_dssp             TTCCEEECCS--S--CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTS
T ss_pred             cCCCEEecCC--C--ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccc
Confidence            4677777764  2  22356655  66777777777777654   456677777777777777764422    4455666


Q ss_pred             --ceEEeeecCC--cce-------e---------------------eccccccccEEEEEee------------------
Q 009616          211 --EDLSFFYCFG--LKR-------L---------------------RISEAHKLKSLILRFT------------------  240 (531)
Q Consensus       211 --e~L~L~~c~~--~~~-------l---------------------~~~~l~~L~~L~l~~~------------------  240 (531)
                        ++|++++|..  .+.       +                     .+.++++|+.|++++|                  
T Consensus       139 ~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  218 (520)
T 2z7x_B          139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT  218 (520)
T ss_dssp             CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG
T ss_pred             eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc
Confidence              7777777654  110       0                     0111333333333332                  


Q ss_pred             ------------c-c--cccee--eeeCCcccEEEecccc--ccceeec-----cCCCCccEEEEeCCCCChh--hhhhh
Q 009616          241 ------------Y-Q--ELESV--EIAVPSLQQLELSFSR--VPRLLDV-----AECPHLRKLVLFLPHFNDQ--EFHPL  294 (531)
Q Consensus       241 ------------~-~--~l~~~--~~~~~~L~~L~l~~~~--~~~~~~~-----~~~~~L~~L~L~~~~~~~~--~~~~~  294 (531)
                                  . .  .+..+  ....++|++|++++|.  +..|..+     +.+++|+.++++++.+...  .+...
T Consensus       219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~  298 (520)
T 2z7x_B          219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI  298 (520)
T ss_dssp             CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred             ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence                        1 0  00000  0012366666666665  3444444     5555555555544443110  00000


Q ss_pred             ---------------------hcCCCCCcEEEeccccchhHH---HhcCcccceecccccc--chhhh---cccCCCcce
Q 009616          295 ---------------------ISKFPLLEDLSIISLETLERI---MISSNRLMHLEVYNCS--GLNRI---NVDAPNLVS  345 (531)
Q Consensus       295 ---------------------l~~~~~L~~L~L~~c~~l~~l---~~~~~~L~~L~l~~c~--~L~~l---~~~~~nL~s  345 (531)
                                           ...+++|+.|++++|..-..+   ....++|+.|++.++.  .+..+   .-..++|+.
T Consensus       299 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             cccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence                                 146677777777776432211   1234566677666543  11111   123456666


Q ss_pred             eEeecCCc----Cc-eecCCCCCcEEEEEeeccCChhhhhhHHHHHhhc-cccceeEEEeeeeeeeeeeccccccCCCCC
Q 009616          346 FDFEDNPI----PI-VSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAF-NQIGELHLSLNYKQVLFNIDEFRSCHPSLP  419 (531)
Q Consensus       346 l~~~~~~~----p~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~  419 (531)
                      +.+++..+    |. .+..+++|+.|++++ +.+.+..       +..+ ++|+.|+++.|...  . +|+.      +.
T Consensus       379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~-------~~~l~~~L~~L~Ls~N~l~--~-ip~~------~~  441 (520)
T 2z7x_B          379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTI-------FRCLPPRIKVLDLHSNKIK--S-IPKQ------VV  441 (520)
T ss_dssp             EECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGG-------GGSCCTTCCEEECCSSCCC--C-CCGG------GG
T ss_pred             EECCCCcCCcccccchhccCccCCEEECcC-CCCCcch-------hhhhcccCCEEECCCCccc--c-cchh------hh
Confidence            66655443    32 245577888888875 4443322       2223 68888888766554  2 6733      33


Q ss_pred             CCcccceEEEEEeeeccCCCchhHHHHHHhHhhhccccceeecCC
Q 009616          420 LQVESLSLFMESFSLYMDVVPSEYEILLDDLFWIFYPKNLCLSPE  464 (531)
Q Consensus       420 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~~~~l~~l~l~~~  464 (531)
                      .+++|++|+|+.|... ..+..       .+-..+++++|.+..-
T Consensus       442 ~l~~L~~L~L~~N~l~-~l~~~-------~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          442 KLEALQELNVASNQLK-SVPDG-------IFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             GCTTCCEEECCSSCCC-CCCTT-------TTTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCcCC-ccCHH-------HhccCCcccEEECcCC
Confidence            5678888888877432 11111       1233456778877543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=1.2e-16  Score=165.99  Aligned_cols=296  Identities=18%  Similarity=0.133  Sum_probs=199.2

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++++|+++.  +  ....+| .+..+++|++|+|++|.+.+.+ ++.+++|++|++++|.+++.  +  ++++++|++
T Consensus        41 l~~L~~L~Ls~--n--~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHN--S--SITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCS--S--CCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCE
T ss_pred             cCCCCEEEccC--C--CcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCcCCE
Confidence            46899999976  2  233456 6888999999999999998832 78899999999999998553  2  788999999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  291 (531)
                      |++++|...+ +++..+++|+.|++++|. ..++  ...+++|++|++++|.......++.+++|+.|++++|.+++  +
T Consensus       111 L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l  185 (457)
T 3bz5_A          111 LNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--L  185 (457)
T ss_dssp             EECCSSCCSC-CCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--C
T ss_pred             EECCCCcCCe-ecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--e
Confidence            9999996543 568889999999999997 3331  33689999999999962222368899999999999999986  2


Q ss_pred             hhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcc-cCCCcceeEeecCCcC-ceecCCCCCcEEEEE
Q 009616          292 HPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINV-DAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFS  369 (531)
Q Consensus       292 ~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~-~~~nL~sl~~~~~~~p-~~~~~~~~L~~L~l~  369 (531)
                      +  +..+++|+.|++++|..-..-...+++|+.|++.++. +..+.+ ..++|+.+.+.+..+. .....+++|+.++++
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence            2  6789999999999875321111224567777666542 222222 2245555555554442 223345556655543


Q ss_pred             eeccCC------hhhhhhHHHHHhhccccceeEEEeeeeeeeeeecc---ccccCCCCCCCcccceEEEEEeeeccCCCc
Q 009616          370 NFGDID------THWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDE---FRSCHPSLPLQVESLSLFMESFSLYMDVVP  440 (531)
Q Consensus       370 ~~~~~~------~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  440 (531)
                      . +...      +...+.++  ..++++|+.|+++.|...+.  +|.   .+... .+...++|++|+++.|...+    
T Consensus       263 ~-n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~--l~~~~~~L~~L-~l~~~~~L~~L~L~~N~l~~----  332 (457)
T 3bz5_A          263 Q-TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL--LDCQAAGITEL-DLSQNPKLVYLYLNNTELTE----  332 (457)
T ss_dssp             T-CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE--EECTTCCCSCC-CCTTCTTCCEEECTTCCCSC----
T ss_pred             C-CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce--eccCCCcceEe-chhhcccCCEEECCCCcccc----
Confidence            2 1110      11111111  35678899988887765554  452   22233 45667889999998884322    


Q ss_pred             hhHHHHHHhHhhhccccceeecC
Q 009616          441 SEYEILLDDLFWIFYPKNLCLSP  463 (531)
Q Consensus       441 ~~~~~l~~~L~~~~~l~~l~l~~  463 (531)
                           +  .+-.++.+++|.+..
T Consensus       333 -----l--~l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          333 -----L--DVSHNTKLKSLSCVN  348 (457)
T ss_dssp             -----C--CCTTCTTCSEEECCS
T ss_pred             -----c--ccccCCcCcEEECCC
Confidence                 1  144566788888743

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=9.9e-17  Score=172.53  Aligned_cols=289  Identities=18%  Similarity=0.128  Sum_probs=146.0

Q ss_pred             CCcEEEEeeecCCCccccCCccc-cCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          135 GVKELDFEVITDKNSVNALPQTI-FSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      +++.+++..    .....+|..+ ..+++|++|+|++|.+.+  +..++++++|++|+|++|.+.+ ..+..++++++|+
T Consensus        52 ~l~~l~l~~----~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  126 (597)
T 3oja_B           52 NQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT  126 (597)
T ss_dssp             CCSEEEESS----CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             CceEEEeeC----CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence            455555433    2233444432 345566666666665554  2345556666666666555532 1223345556666


Q ss_pred             eEEeeecCCcceee--ccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCC
Q 009616          212 DLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       212 ~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      +|+|++|.......  +.++++|+.|++++|. ..+. .....+++|++|++++|. ...  .++.+++|+.|++++|.+
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCcc
Confidence            66665554322111  2345556666666554 1111 122345556666666555 211  244555566666555555


Q ss_pred             ChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceecccccc--chhhhcccCCCcceeEeecCCc----CceecCC
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCS--GLNRINVDAPNLVSFDFEDNPI----PIVSTNA  360 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~--~L~~l~~~~~nL~sl~~~~~~~----p~~~~~~  360 (531)
                      ++      +...++|+.|++++|..-.......++|+.|++.++.  ....+ ...++|+.+.+++..+    |..++.+
T Consensus       205 ~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          205 ST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             SE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             cc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh-ccCCCCCEEECCCCccCCCCHHHhcCc
Confidence            43      1233455555555543211001112344444444321  00001 1223444444444333    4567788


Q ss_pred             CCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCCCc
Q 009616          361 PCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVP  440 (531)
Q Consensus       361 ~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  440 (531)
                      ++|+.|++++ +.+.+.     +.....+++|+.|+|+.|...  . +|.      .++.+++|++|+|+.|....-   
T Consensus       278 ~~L~~L~Ls~-N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~--~-i~~------~~~~l~~L~~L~L~~N~l~~~---  339 (597)
T 3oja_B          278 QRLERLYISN-NRLVAL-----NLYGQPIPTLKVLDLSHNHLL--H-VER------NQPQFDRLENLYLDHNSIVTL---  339 (597)
T ss_dssp             SSCCEEECTT-SCCCEE-----ECSSSCCTTCCEEECCSSCCC--C-CGG------GHHHHTTCSEEECCSSCCCCC---
T ss_pred             cCCCEEECCC-CCCCCC-----CcccccCCCCcEEECCCCCCC--c-cCc------ccccCCCCCEEECCCCCCCCc---
Confidence            8999999985 444332     223356789999998876654  2 662      445678899999998843211   


Q ss_pred             hhHHHHHHhHhhhccccceeecC
Q 009616          441 SEYEILLDDLFWIFYPKNLCLSP  463 (531)
Q Consensus       441 ~~~~~l~~~L~~~~~l~~l~l~~  463 (531)
                              .+-..+.+++|.+..
T Consensus       340 --------~~~~~~~L~~L~l~~  354 (597)
T 3oja_B          340 --------KLSTHHTLKNLTLSH  354 (597)
T ss_dssp             --------CCCTTCCCSEEECCS
T ss_pred             --------ChhhcCCCCEEEeeC
Confidence                    123345678888743

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=3.9e-16  Score=158.82  Aligned_cols=268  Identities=14%  Similarity=0.095  Sum_probs=154.9

Q ss_pred             HcCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616          133 ENGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~  209 (531)
                      .+++++|++..    .....+| ..+..+++|++|+|++|.+.+  +..++++++|++|+|++|.+.. ....+++++++
T Consensus        68 l~~L~~L~L~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~  142 (390)
T 3o6n_A           68 FRQVELLNLND----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPK  142 (390)
T ss_dssp             CCCCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             cccCcEEECCC----CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCC
Confidence            36899998865    2233444 367788999999999998877  4457889999999999988752 12233578899


Q ss_pred             cceEEeeecCCccee--eccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCC
Q 009616          210 LEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       210 Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |++|++++|...+..  .+.++++|+.|++++|. ....  ...+++|+.|++++|...   .+...++|+.|+++++.+
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSI  217 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS---EEECCSSCSEEECCSSCC
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc---ccCCCCcceEEECCCCee
Confidence            999999888654322  24567889999988886 2111  124566666666665411   112223444444444444


Q ss_pred             ChhhhhhhhcCCCCCcEEEeccccchh-HHHhcCcccceeccccccchhhh----cccCCCcceeEeecCCc---Cceec
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLETLE-RIMISSNRLMHLEVYNCSGLNRI----NVDAPNLVSFDFEDNPI---PIVST  358 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~-~l~~~~~~L~~L~l~~c~~L~~l----~~~~~nL~sl~~~~~~~---p~~~~  358 (531)
                      +..  +  ...+++|+.|++++|..-. ......++|+.|++.++. +..+    -...++|+.+.+.+..+   |....
T Consensus       218 ~~~--~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (390)
T 3o6n_A          218 NVV--R--GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ  292 (390)
T ss_dssp             CEE--E--CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred             eec--c--ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence            321  0  0112344444444432210 001112344444443321 1000    01123344444433332   23345


Q ss_pred             CCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          359 NAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       359 ~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      .+++|+.|++++ +.+...     +..+..+++|+.|+++.|....   +|        +..+++|++|++..|
T Consensus       293 ~l~~L~~L~L~~-n~l~~~-----~~~~~~l~~L~~L~L~~N~i~~---~~--------~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          293 PIPTLKVLDLSH-NHLLHV-----ERNQPQFDRLENLYLDHNSIVT---LK--------LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCTTCCEEECCS-SCCCCC-----GGGHHHHTTCSEEECCSSCCCC---CC--------CCTTCCCSEEECCSS
T ss_pred             CCCCCCEEECCC-Ccceec-----CccccccCcCCEEECCCCccce---eC--------chhhccCCEEEcCCC
Confidence            688999999985 444432     2335678999999998766432   22        556789999999998

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.64  E-value=1.6e-16  Score=169.85  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=44.4

Q ss_pred             cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      +++++|+++.    .....+| ..+..+++|++|++++|.+.. + ..++++++|++|++++|.+....++..++++++|
T Consensus        76 ~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  151 (570)
T 2z63_A           76 SHLSTLILTG----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (570)
T ss_dssp             TTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             hhCCEEeCcC----CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence            3566666653    1122232 445556666666666666555 2 2355666666666666655332233345566666


Q ss_pred             ceEEeeecC
Q 009616          211 EDLSFFYCF  219 (531)
Q Consensus       211 e~L~L~~c~  219 (531)
                      ++|++++|.
T Consensus       152 ~~L~l~~n~  160 (570)
T 2z63_A          152 EHLDLSSNK  160 (570)
T ss_dssp             CEEECTTSC
T ss_pred             CEEeCcCCc
Confidence            666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=3.1e-16  Score=155.82  Aligned_cols=263  Identities=12%  Similarity=0.035  Sum_probs=140.5

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +++.+++..    .....+|..+.  ++|++|+|++|.+.+  +..++++++|++|+|++|.+... .+..++.+++|++
T Consensus        32 ~l~~l~~~~----~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSD----LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLER  104 (330)
T ss_dssp             ETTEEECTT----SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCE
T ss_pred             CCeEEEecC----CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCE
Confidence            455555432    22344555443  567777777777766  33567777777777777776431 2334567777777


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-c---cceeeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-V---PRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~---~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |++++|... .++..-.++|++|++++|. ..+.. ....+++|++|++++|. .   ..+..+..+++|+.|+++++.+
T Consensus       105 L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             EECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            777777532 3333323677777777775 22221 22356777777777776 1   3344567777777887777777


Q ss_pred             ChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEE
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNV  366 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L  366 (531)
                      +.  ++..+  .++|+.|++++|..-....        -.+..+++|+.+.++.+.+...      .+..+..+++|++|
T Consensus       184 ~~--l~~~~--~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L  245 (330)
T 1xku_A          184 TT--IPQGL--PPSLTELHLDGNKITKVDA--------ASLKGLNNLAKLGLSFNSISAV------DNGSLANTPHLREL  245 (330)
T ss_dssp             CS--CCSSC--CTTCSEEECTTSCCCEECT--------GGGTTCTTCCEEECCSSCCCEE------CTTTGGGSTTCCEE
T ss_pred             cc--CCccc--cccCCEEECCCCcCCccCH--------HHhcCCCCCCEEECCCCcCcee------ChhhccCCCCCCEE
Confidence            63  22211  2677777777754210000        0112223333333333332211      12234456677777


Q ss_pred             EEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccC-CCCCCCcccceEEEEEe
Q 009616          367 LFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESF  432 (531)
Q Consensus       367 ~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~-~~~~~~~~L~~L~L~~~  432 (531)
                      ++++ +.+..     ++..+..+++|+.|+++.|....   +|...+.. ........|+.|++.+|
T Consensus       246 ~L~~-N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~---~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          246 HLNN-NKLVK-----VPGGLADHKYIQVVYLHNNNISA---IGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             ECCS-SCCSS-----CCTTTTTCSSCCEEECCSSCCCC---CCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             ECCC-CcCcc-----CChhhccCCCcCEEECCCCcCCc---cChhhcCCcccccccccccceEeecC
Confidence            7764 33331     22234566777777766554332   33222211 01123456667777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=2.4e-16  Score=172.35  Aligned_cols=286  Identities=14%  Similarity=0.049  Sum_probs=139.8

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCC--CccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAK--LLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~--~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~  209 (531)
                      ..+++|+++.   .......|..+..++  +|++|+|++|.+.+  +..++.+++|++|++++|.+.+. .+..+.++++
T Consensus       222 ~~L~~L~L~~---n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  297 (680)
T 1ziw_A          222 TSIRNLSLSN---SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFN  297 (680)
T ss_dssp             SCCCEEECTT---SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTT
T ss_pred             ccccEEEccC---CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCC
Confidence            4677777654   111222344444443  37777777776665  34566677777777776665321 2223445555


Q ss_pred             cceEEeeecCCcce-----------eeccccccccEEEEEeec-ccc-ceeeeeC-------------------------
Q 009616          210 LEDLSFFYCFGLKR-----------LRISEAHKLKSLILRFTY-QEL-ESVEIAV-------------------------  251 (531)
Q Consensus       210 Le~L~L~~c~~~~~-----------l~~~~l~~L~~L~l~~~~-~~l-~~~~~~~-------------------------  251 (531)
                      |++|++.+|...+.           ..+..+++|++|++++|. ... +.....+                         
T Consensus       298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~  377 (680)
T 1ziw_A          298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS  377 (680)
T ss_dssp             CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred             ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence            55555554321110           012233444444444443 111 1111122                         


Q ss_pred             ---CcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchh---HHHhcCcccc
Q 009616          252 ---PSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE---RIMISSNRLM  323 (531)
Q Consensus       252 ---~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~---~l~~~~~~L~  323 (531)
                         ++|+.|++++|.  ...+..+..+++|+.|++++|.+++......+.++++|+.|++++|....   .....+++|+
T Consensus       378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  457 (680)
T 1ziw_A          378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ  457 (680)
T ss_dssp             GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred             cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence               355666666555  22334566777777777777777654444556677777777777765311   1112245566


Q ss_pred             eecccccc--chhhh---cccCCCcceeEeecCCc----CceecCCCCCcEEEEEeeccCChhhhhhHH----HHHhhcc
Q 009616          324 HLEVYNCS--GLNRI---NVDAPNLVSFDFEDNPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLM----EFIGAFN  390 (531)
Q Consensus       324 ~L~l~~c~--~L~~l---~~~~~nL~sl~~~~~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~l~~l~  390 (531)
                      .|++.++.  .+..+   --..++|+.+.+.+..+    +..+..+++|+.|++++ +.+.......++    ..+.+++
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCC
Confidence            66555432  00000   01223444554444332    13345566777777764 333322111100    1245566


Q ss_pred             ccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          391 QIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       391 ~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      +|+.|+++.|...  . +|..     .+..+++|++|+|+.|
T Consensus       537 ~L~~L~L~~N~l~--~-i~~~-----~~~~l~~L~~L~Ls~N  570 (680)
T 1ziw_A          537 HLHILNLESNGFD--E-IPVE-----VFKDLFELKIIDLGLN  570 (680)
T ss_dssp             TCCEEECCSSCCC--C-CCTT-----TTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCC--C-CCHH-----HcccccCcceeECCCC
Confidence            6777666655433  1 4411     2344566666666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=3.4e-16  Score=168.20  Aligned_cols=285  Identities=15%  Similarity=0.123  Sum_probs=190.9

Q ss_pred             cCCcEEEEeeecCCCcccc---CCccccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEechHhHHHHH
Q 009616          134 NGVKELDFEVITDKNSVNA---LPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYVNDQMVQSLV  204 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~---lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~l  204 (531)
                      +++++|+|..  +......   ++.....+++|++|++++|.+.+      +..+.++++|++|++++|.+.+  ++..+
T Consensus       164 ~~L~~L~L~~--~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~  239 (592)
T 3ogk_B          164 RKIKTLLMEE--SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFF  239 (592)
T ss_dssp             TTCSEEECTT--CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHH
T ss_pred             CCCCEEECcc--ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHH
Confidence            6899999875  2111111   34444578999999999998863      3344678999999999987644  66778


Q ss_pred             hCCcccceEEeeecCCc----------------cee------------eccccccccEEEEEeec---cccceeeeeCCc
Q 009616          205 RECRVLEDLSFFYCFGL----------------KRL------------RISEAHKLKSLILRFTY---QELESVEIAVPS  253 (531)
Q Consensus       205 ~~~~~Le~L~L~~c~~~----------------~~l------------~~~~l~~L~~L~l~~~~---~~l~~~~~~~~~  253 (531)
                      .++++|++|+++.+...                ..+            .+..+++|++|++++|.   ..+..+...+++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            88999999999743221                111            12246799999999886   122233357899


Q ss_pred             ccEEEecccc--ccceeeccCCCCccEEEEe-----------CCCCChhhhhhhhcCCCCCcEEEeccccc----hhHHH
Q 009616          254 LQQLELSFSR--VPRLLDVAECPHLRKLVLF-----------LPHFNDQEFHPLISKFPLLEDLSIISLET----LERIM  316 (531)
Q Consensus       254 L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~-----------~~~~~~~~~~~~l~~~~~L~~L~L~~c~~----l~~l~  316 (531)
                      |++|+++++.  ...+.....+++|+.|+++           ++.+++..+..+...+++|++|++..+..    +..+.
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            9999998554  3333345678999999998           46788777777777899999999943322    33344


Q ss_pred             hcCcccceecccc---ccchhh---------hcccCCCcceeEeecCC--cC----ceec-CCCCCcEEEEEeeccCChh
Q 009616          317 ISSNRLMHLEVYN---CSGLNR---------INVDAPNLVSFDFEDNP--IP----IVST-NAPCPLNVLFSNFGDIDTH  377 (531)
Q Consensus       317 ~~~~~L~~L~l~~---c~~L~~---------l~~~~~nL~sl~~~~~~--~p----~~~~-~~~~L~~L~l~~~~~~~~~  377 (531)
                      ..+++|+.|++..   |..+..         +....++|+.+.+..+.  +.    ..++ .+++|+.|++++ +.+.. 
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~-  477 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY-VGESD-  477 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS-CCSSH-
T ss_pred             hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC-CCCCH-
Confidence            4477899998874   334432         23346788888874321  21    1222 478899999985 33332 


Q ss_pred             hhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          378 WYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       378 ~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                        ..++.++.++++|+.|+++.|...... ++.      ....+++|++|+|+.|.
T Consensus       478 --~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~------~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          478 --EGLMEFSRGCPNLQKLEMRGCCFSERA-IAA------AVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             --HHHHHHHTCCTTCCEEEEESCCCBHHH-HHH------HHHHCSSCCEEEEESCB
T ss_pred             --HHHHHHHhcCcccCeeeccCCCCcHHH-HHH------HHHhcCccCeeECcCCc
Confidence              345567788999999999987754433 331      12346889999999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.63  E-value=1.9e-16  Score=157.63  Aligned_cols=251  Identities=15%  Similarity=0.168  Sum_probs=172.2

Q ss_pred             HHHHHHHHHc-CCcEEEEeeecCCCccccCCccccCC--CCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhH
Q 009616          125 DKWVELAMEN-GVKELDFEVITDKNSVNALPQTIFSA--KLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMV  200 (531)
Q Consensus       125 ~~wl~~~~~~-~l~~L~L~~~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l  200 (531)
                      .+|-..+..+ .++.++++.  ...    -|..+..+  ++++.|++++|.+.+ ++...++++|++|++++|.+++..+
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~--~~~----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTG--KNL----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTT--CBC----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred             HHHHHHhcCchhheeecccc--ccC----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence            4565554333 488888764  111    14445555  899999999999888 5667789999999999999977778


Q ss_pred             HHHHhCCcccceEEeeecCCcce--eeccccccccEEEEEeec--c--ccceeeeeCCcccEEEeccc-c-c--cceeec
Q 009616          201 QSLVRECRVLEDLSFFYCFGLKR--LRISEAHKLKSLILRFTY--Q--ELESVEIAVPSLQQLELSFS-R-V--PRLLDV  270 (531)
Q Consensus       201 ~~~l~~~~~Le~L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~--~--~l~~~~~~~~~L~~L~l~~~-~-~--~~~~~~  270 (531)
                      +..+..|++|++|++++|.....  ..+..+++|++|++++|.  .  .++.....+++|++|++++| . .  ..+..+
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  190 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  190 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence            88899999999999999975332  234568999999999984  2  24444557899999999999 5 2  245567


Q ss_pred             cCCC-CccEEEEeCC--CCChhhhhhhhcCCCCCcEEEeccccchhHH----HhcCcccceeccccccchhhhcccCCCc
Q 009616          271 AECP-HLRKLVLFLP--HFNDQEFHPLISKFPLLEDLSIISLETLERI----MISSNRLMHLEVYNCSGLNRINVDAPNL  343 (531)
Q Consensus       271 ~~~~-~L~~L~L~~~--~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l----~~~~~~L~~L~l~~c~~L~~l~~~~~nL  343 (531)
                      ..++ +|+.|+++++  .+++..++..+.++++|+.|++++|..++..    ....++|+.|++.+|..+..-.      
T Consensus       191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------  264 (336)
T 2ast_B          191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET------  264 (336)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG------
T ss_pred             HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH------
Confidence            8889 9999999988  6776777778888999999999998743221    1123555666665554211000      


Q ss_pred             ceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeee
Q 009616          344 VSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL  405 (531)
Q Consensus       344 ~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~  405 (531)
                                ...+.++++|+.|++++ + ...   ..+..+..   +++.|.++.+...+.
T Consensus       265 ----------~~~l~~~~~L~~L~l~~-~-i~~---~~~~~l~~---~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          265 ----------LLELGEIPTLKTLQVFG-I-VPD---GTLQLLKE---ALPHLQINCSHFTTI  308 (336)
T ss_dssp             ----------GGGGGGCTTCCEEECTT-S-SCT---TCHHHHHH---HSTTSEESCCCSCCT
T ss_pred             ----------HHHHhcCCCCCEEeccC-c-cCH---HHHHHHHh---hCcceEEecccCccc
Confidence                      02345688999999984 2 222   12223333   355556776665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=5.9e-16  Score=166.47  Aligned_cols=256  Identities=15%  Similarity=0.145  Sum_probs=155.5

Q ss_pred             cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      ++++.|+++.  +  ....+| ..+..+++|++|+|++|.+.+  +..++++++|++|+|++|.++. ..+.+++++++|
T Consensus        75 ~~L~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLNLND--L--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL  149 (597)
T ss_dssp             CCCSEEECTT--S--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEECCC--C--CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCC
Confidence            5888888865  1  223344 467788889999999988877  4456888999999999888753 223345788899


Q ss_pred             ceEEeeecCCccee--eccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCC--------------
Q 009616          211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAEC--------------  273 (531)
Q Consensus       211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------  273 (531)
                      ++|+|++|...+..  .+.++++|+.|++++|. ..+.  ...+++|+.|++++|...   .+...              
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~---~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS---EEECCTTCSEEECCSSCCC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc---cccCCchhheeeccCCccc
Confidence            99999888654432  24567888888888875 2211  123556666666655410   11222              


Q ss_pred             -------CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCccee
Q 009616          274 -------PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSF  346 (531)
Q Consensus       274 -------~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl  346 (531)
                             ++|+.|+|++|.+++.   ..+.++++|+.|+|++|..-....        -.+..+++|+.+.++.+++..+
T Consensus       225 ~~~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          225 VVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMY--------HPFVKMQRLERLYISNNRLVAL  293 (597)
T ss_dssp             EEECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEES--------GGGTTCSSCCEEECTTSCCCEE
T ss_pred             ccccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCH--------HHhcCccCCCEEECCCCCCCCC
Confidence                   3455555555555531   234455555555555543110000        0112233344444444443222


Q ss_pred             EeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccce
Q 009616          347 DFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLS  426 (531)
Q Consensus       347 ~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~  426 (531)
                             |.....+++|+.|++++ +.+..     ++..+..+++|+.|+++.|....   +|        +..+++|++
T Consensus       294 -------~~~~~~l~~L~~L~Ls~-N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~---~~--------~~~~~~L~~  349 (597)
T 3oja_B          294 -------NLYGQPIPTLKVLDLSH-NHLLH-----VERNQPQFDRLENLYLDHNSIVT---LK--------LSTHHTLKN  349 (597)
T ss_dssp             -------ECSSSCCTTCCEEECCS-SCCCC-----CGGGHHHHTTCSEEECCSSCCCC---CC--------CCTTCCCSE
T ss_pred             -------CcccccCCCCcEEECCC-CCCCc-----cCcccccCCCCCEEECCCCCCCC---cC--------hhhcCCCCE
Confidence                   33445688999999985 44442     22335788999999998766432   22        556789999


Q ss_pred             EEEEEeee
Q 009616          427 LFMESFSL  434 (531)
Q Consensus       427 L~L~~~~~  434 (531)
                      |+|+.|..
T Consensus       350 L~l~~N~~  357 (597)
T 3oja_B          350 LTLSHNDW  357 (597)
T ss_dssp             EECCSSCE
T ss_pred             EEeeCCCC
Confidence            99998843

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=2.2e-16  Score=155.07  Aligned_cols=237  Identities=16%  Similarity=0.090  Sum_probs=134.6

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC-CcC-CCCCCccCEEEeeeEEechH-hHHHHHhCCcccceEEeeecCCcce-
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSH-CANLQSLKKLSLDEVYVNDQ-MVQSLVRECRVLEDLSFFYCFGLKR-  223 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~-~l~~~l~~~~~Le~L~L~~c~~~~~-  223 (531)
                      .....+|..+.  ++|++|+|++|.+.. +.. +.++++|++|+|++|.++.. ..+..+..+++|++|++++|..... 
T Consensus        17 ~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~   94 (306)
T 2z66_A           17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS   94 (306)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred             CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence            34556776553  689999999998887 443 67899999999999887421 1123355788999999988864321 


Q ss_pred             eeccccccccEEEEEeec-cccce--eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616          224 LRISEAHKLKSLILRFTY-QELES--VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (531)
Q Consensus       224 l~~~~l~~L~~L~l~~~~-~~l~~--~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  298 (531)
                      ..+.++++|++|++++|. .....  ....+++|++|++++|.  ...+..++.+++|+.|++++|.+++...+..+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence            113355666666666654 22211  22245556666666555  22333455555666666655555543344445555


Q ss_pred             CCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhh
Q 009616          299 PLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHW  378 (531)
Q Consensus       299 ~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~  378 (531)
                      ++|+.|++++|.                                +..      ..|..+..+++|+.|++++ +.+....
T Consensus       175 ~~L~~L~Ls~n~--------------------------------l~~------~~~~~~~~l~~L~~L~L~~-N~l~~~~  215 (306)
T 2z66_A          175 RNLTFLDLSQCQ--------------------------------LEQ------LSPTAFNSLSSLQVLNMSH-NNFFSLD  215 (306)
T ss_dssp             TTCCEEECTTSC--------------------------------CCE------ECTTTTTTCTTCCEEECTT-SCCSBCC
T ss_pred             cCCCEEECCCCC--------------------------------cCC------cCHHHhcCCCCCCEEECCC-CccCccC
Confidence            555555555532                                111      0122333455666666653 3322211


Q ss_pred             hhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCC-cccceEEEEEeeeccC
Q 009616          379 YLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ-VESLSLFMESFSLYMD  437 (531)
Q Consensus       379 ~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~-~~L~~L~L~~~~~~~~  437 (531)
                      .    ..+..+++|+.|+++.|.....  .|.      .+..+ .+|++|+|+.|....+
T Consensus       216 ~----~~~~~l~~L~~L~L~~N~l~~~--~~~------~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          216 T----FPYKCLNSLQVLDYSLNHIMTS--KKQ------ELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             S----GGGTTCTTCCEEECTTSCCCBC--SSS------SCCCCCTTCCEEECTTCCEECS
T ss_pred             h----hhccCcccCCEeECCCCCCccc--CHH------HHHhhhccCCEEEccCCCeecc
Confidence            1    1235667777777776655443  331      34444 4899999988754433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=5.7e-16  Score=169.33  Aligned_cols=287  Identities=17%  Similarity=0.155  Sum_probs=164.4

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.    .....+|. .+.++++|++|+|++|.+.+  +..++++++|++|+|++|.+.. ..+..++++++|
T Consensus        25 ~~l~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCS----SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEECCC----CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCC
Confidence            4677777764    12233443 45667777777777777666  4445667777777777776632 112235667777


Q ss_pred             ceEEeeecCCccee--eccccccccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeec--cCCCCccEEEEe
Q 009616          211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDV--AECPHLRKLVLF  282 (531)
Q Consensus       211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~--~~~~~L~~L~L~  282 (531)
                      ++|++++|...+..  .+.++++|++|++++|.  +..+.....+++|++|++++|.  +..+..+  ..+++|+.|+++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            77777777543221  24456777777777775  1122223356777777777776  2222222  245677777777


Q ss_pred             CCCCChhhhhhhhcCCCCCcEEEeccccchhHHH------hcCcccceeccccccchhhh------cccCCCcceeEeec
Q 009616          283 LPHFNDQEFHPLISKFPLLEDLSIISLETLERIM------ISSNRLMHLEVYNCSGLNRI------NVDAPNLVSFDFED  350 (531)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~------~~~~~L~~L~l~~c~~L~~l------~~~~~nL~sl~~~~  350 (531)
                      +|.+++ ..+..+..+++|+.|++.++.......      ...++|+.|++.++. +..+      .+..++|+.+.+.+
T Consensus       180 ~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          180 SNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             TCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTT
T ss_pred             CCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCC
Confidence            777663 234445566777777776654321111      123567777776642 1110      01123466666655


Q ss_pred             CCc----CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeee---eeccccccCCCCCCCcc
Q 009616          351 NPI----PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLF---NIDEFRSCHPSLPLQVE  423 (531)
Q Consensus       351 ~~~----p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~---~ip~~~~~~~~~~~~~~  423 (531)
                      ..+    |..+..+++|+.|++++ +.+.+.    .+..+.++++|+.|++..+......   .+| .+... .+..+++
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp-~i~~~-~~~~l~~  330 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLPQLEYFFLEY-NNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLP-KIDDF-SFQWLKC  330 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCS-CCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CC-EECTT-TTTTCTT
T ss_pred             CCcCccCcccccCcccccEeeCCC-CccCcc----ChhhhcCCCCccEEeccchhhhccccccccc-ccChh-hcccCCC
Confidence            543    34566788999999985 333332    2344577889999888643322211   023 11122 4667899


Q ss_pred             cceEEEEEeee
Q 009616          424 SLSLFMESFSL  434 (531)
Q Consensus       424 L~~L~L~~~~~  434 (531)
                      |++|++..|..
T Consensus       331 L~~L~l~~n~l  341 (680)
T 1ziw_A          331 LEHLNMEDNDI  341 (680)
T ss_dssp             CCEEECCSCCB
T ss_pred             CCEEECCCCcc
Confidence            99999998743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=6.1e-15  Score=157.91  Aligned_cols=255  Identities=18%  Similarity=0.133  Sum_probs=175.9

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      ..+++.|+++.    .....+|..+.  ++|++|+|++|.+.. |.   .+++|++|+|++|.++.  ++.   .+++|+
T Consensus        39 ~~~l~~L~ls~----n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~  104 (622)
T 3g06_A           39 NNGNAVLNVGE----SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLL  104 (622)
T ss_dssp             HHCCCEEECCS----SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCC
T ss_pred             CCCCcEEEecC----CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCC
Confidence            34788888865    33457787665  789999999998887 43   57899999999998743  332   678999


Q ss_pred             eEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          212 DLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       212 ~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      +|++++|...+ ++. .+++|+.|++++|.  +..+....++|++|++++|. ...+   ...++|+.|++++|.++.  
T Consensus       105 ~L~Ls~N~l~~-l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~--  175 (622)
T 3g06_A          105 ELSIFSNPLTH-LPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS--  175 (622)
T ss_dssp             EEEECSCCCCC-CCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--
T ss_pred             EEECcCCcCCC-CCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCC--
Confidence            99999886533 222 46889999999886  22233345899999999987 3333   245788999998888875  


Q ss_pred             hhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616          291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN  370 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~  370 (531)
                      ++   ..+++|+.|++++|.. ..+....++|+.|.+.++. +..+.-..++|+.+.+++..+......+++|+.|++++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~  250 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG  250 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             Cc---ccCCCCcEEECCCCCC-CCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCC
Confidence            22   5678899999988753 2333344678888777652 33333334567777666655432114568899999985


Q ss_pred             eccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEee
Q 009616          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                       +.+..        ++..+++|+.|+++.|...  . +|+      .+..+++|+.|+|..|.
T Consensus       251 -N~L~~--------lp~~~~~L~~L~Ls~N~L~--~-lp~------~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          251 -NRLTS--------LPMLPSGLLSLSVYRNQLT--R-LPE------SLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             -SCCSC--------CCCCCTTCCEEECCSSCCC--S-CCG------GGGGSCTTCEEECCSCC
T ss_pred             -CCCCc--------CCcccccCcEEeCCCCCCC--c-CCH------HHhhccccCEEEecCCC
Confidence             44432        1126788999999877655  3 773      45567899999999983

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=7e-16  Score=164.74  Aligned_cols=100  Identities=18%  Similarity=0.086  Sum_probs=52.2

Q ss_pred             cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      +++++|+++.    .....+| ..+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.+..  ++..  .+++|
T Consensus        52 ~~L~~L~Ls~----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQ----NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMASL  123 (562)
T ss_dssp             TTCCEEECCS----SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTTC
T ss_pred             CCcCEEECCC----CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--ccccC
Confidence            4566666553    1122333 345556666666666666555  3445556666666666665531  2221  55666


Q ss_pred             ceEEeeecCCcc-e--eeccccccccEEEEEeec
Q 009616          211 EDLSFFYCFGLK-R--LRISEAHKLKSLILRFTY  241 (531)
Q Consensus       211 e~L~L~~c~~~~-~--l~~~~l~~L~~L~l~~~~  241 (531)
                      ++|++++|...+ .  -.+.++++|++|++++|.
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            666666665432 1  123455666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.59  E-value=9.9e-16  Score=152.29  Aligned_cols=262  Identities=11%  Similarity=-0.002  Sum_probs=151.5

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .++.++++.    .....+|..+.  ++|++|++++|.+.+  +..+.++++|++|++++|.+... .+..++++++|++
T Consensus        34 ~l~~l~~~~----~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSD----LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCS----SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCE
T ss_pred             cCCEEECCC----CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCE
Confidence            466666543    23446666553  578888888888776  44677888888888888877432 2334677888888


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-c---cceeeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-V---PRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~---~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |++++|... .++..-.++|++|++++|. ..++. ....+++|++|++++|. .   ..+..++.+ +|+.|++++|.+
T Consensus       107 L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             EECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             EECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            888877543 3332223677888877776 22222 23356777777777776 1   233445555 777777777776


Q ss_pred             ChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEE
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNV  366 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L  366 (531)
                      ++  ++..+  .++|+.|+++++..-..        ..-.+..+++|+.+.++.+++.      +..+..+..+++|+.|
T Consensus       185 ~~--l~~~~--~~~L~~L~l~~n~i~~~--------~~~~l~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L  246 (332)
T 2ft3_A          185 TG--IPKDL--PETLNELHLDHNKIQAI--------ELEDLLRYSKLYRLGLGHNQIR------MIENGSLSFLPTLREL  246 (332)
T ss_dssp             SS--CCSSS--CSSCSCCBCCSSCCCCC--------CTTSSTTCTTCSCCBCCSSCCC------CCCTTGGGGCTTCCEE
T ss_pred             Cc--cCccc--cCCCCEEECCCCcCCcc--------CHHHhcCCCCCCEEECCCCcCC------cCChhHhhCCCCCCEE
Confidence            64  22211  25777777776532110        0001223444555555444432      1123455667888888


Q ss_pred             EEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccc-cCCCCCCCcccceEEEEEe
Q 009616          367 LFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRS-CHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       367 ~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~-~~~~~~~~~~L~~L~L~~~  432 (531)
                      ++++ +.+..     ++..+..+++|+.|+++.|....   +|...+ +.........|+.|++.+|
T Consensus       247 ~L~~-N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~---~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          247 HLDN-NKLSR-----VPAGLPDLKLLQVVYLHTNNITK---VGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             ECCS-SCCCB-----CCTTGGGCTTCCEEECCSSCCCB---CCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             ECCC-CcCee-----cChhhhcCccCCEEECCCCCCCc---cChhHccccccccccccccceEeecC
Confidence            8875 43332     22335678888888887665443   332222 1101123567788888877

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.59  E-value=6e-15  Score=146.46  Aligned_cols=266  Identities=14%  Similarity=0.086  Sum_probs=157.2

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      +.++.|+++.    .....+|. .+..+++|++|+|++|.+.+  |..++++++|++|++++|.++.  ++.  .-+++|
T Consensus        52 ~~l~~L~L~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L  123 (330)
T 1xku_A           52 PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTL  123 (330)
T ss_dssp             TTCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTC
T ss_pred             CCCeEEECCC----CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccc
Confidence            4678888765    22334544 56778889999998888877  5667888889999988887742  221  224788


Q ss_pred             ceEEeeecCCccee--eccccccccEEEEEeec-c---ccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeC
Q 009616          211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-Q---ELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFL  283 (531)
Q Consensus       211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~---~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~  283 (531)
                      ++|++++|...+..  .+.++++|+.|++++|. .   ........+++|++|++++|. ...+..+  .++|+.|++++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~  201 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG  201 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC
Confidence            88888887654322  24567888888888876 1   112223367888888888887 4343333  27888888888


Q ss_pred             CCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCC
Q 009616          284 PHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCP  363 (531)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L  363 (531)
                      |.+++. .+..+.++++|+.|+|++|..-....        -.+..+++|+.+.++.+++.       .+|..+..+++|
T Consensus       202 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L  265 (330)
T 1xku_A          202 NKITKV-DAASLKGLNNLAKLGLSFNSISAVDN--------GSLANTPHLRELHLNNNKLV-------KVPGGLADHKYI  265 (330)
T ss_dssp             SCCCEE-CTGGGTTCTTCCEEECCSSCCCEECT--------TTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSC
T ss_pred             CcCCcc-CHHHhcCCCCCCEEECCCCcCceeCh--------hhccCCCCCCEEECCCCcCc-------cCChhhccCCCc
Confidence            888743 34556788888888888864211000        01222333444444443332       234445567778


Q ss_pred             cEEEEEeeccCChhhhhhHHH--HHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          364 LNVLFSNFGDIDTHWYLNLME--FIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       364 ~~L~l~~~~~~~~~~~~~l~~--~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      +.|++++ +.+.......+..  .....+.++.|++..|...... +++    . .+..+.+++.++|+.|
T Consensus       266 ~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~----~-~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          266 QVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQP----S-TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCG----G-GGTTCCCGGGEEC---
T ss_pred             CEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc-cCc----c-ccccccceeEEEeccc
Confidence            8888874 4443322111100  0112466777777665543322 321    1 3445677888887765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.58  E-value=5.5e-16  Score=152.27  Aligned_cols=220  Identities=16%  Similarity=0.055  Sum_probs=155.6

Q ss_pred             cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEechHhHHHHHhCCc
Q 009616          134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECR  208 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~  208 (531)
                      .++++|+++.    .....+|.. +..+++|++|+|++|.+..    +..+..+++|++|++++|.+..  ++..+..++
T Consensus        28 ~~l~~L~L~~----n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~  101 (306)
T 2z66_A           28 SSATRLELES----NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE  101 (306)
T ss_dssp             TTCCEEECCS----SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred             CCCCEEECCC----CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence            4789999875    234467765 4688999999999998864    3455679999999999998743  233367899


Q ss_pred             ccceEEeeecCCccee---eccccccccEEEEEeec--cccceeeeeCCcccEEEecccc-c--cceeeccCCCCccEEE
Q 009616          209 VLEDLSFFYCFGLKRL---RISEAHKLKSLILRFTY--QELESVEIAVPSLQQLELSFSR-V--PRLLDVAECPHLRKLV  280 (531)
Q Consensus       209 ~Le~L~L~~c~~~~~l---~~~~l~~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~L~  280 (531)
                      +|++|++++|...+..   .+.++++|+.|++++|.  ...+.....+++|++|++++|. .  ..+..+..+++|+.|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            9999999998653322   34568999999999986  2222333468999999999998 2  3577889999999999


Q ss_pred             EeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCC
Q 009616          281 LFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNA  360 (531)
Q Consensus       281 L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~  360 (531)
                      +++|.+++ ..+..+.++++|+.|+|++|....        +....+..+++|+.++++.+++      .+..|..+..+
T Consensus       182 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l------~~~~~~~~~~~  246 (306)
T 2z66_A          182 LSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS--------LDTFPYKCLNSLQVLDYSLNHI------MTSKKQELQHF  246 (306)
T ss_dssp             CTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSB--------CCSGGGTTCTTCCEEECTTSCC------CBCSSSSCCCC
T ss_pred             CCCCCcCC-cCHHHhcCCCCCCEEECCCCccCc--------cChhhccCcccCCEeECCCCCC------cccCHHHHHhh
Confidence            99999985 345567889999999999975311        1111123344455555554443      12234445555


Q ss_pred             -CCCcEEEEEeeccCC
Q 009616          361 -PCPLNVLFSNFGDID  375 (531)
Q Consensus       361 -~~L~~L~l~~~~~~~  375 (531)
                       ++|+.|++++ +.+.
T Consensus       247 ~~~L~~L~L~~-N~~~  261 (306)
T 2z66_A          247 PSSLAFLNLTQ-NDFA  261 (306)
T ss_dssp             CTTCCEEECTT-CCEE
T ss_pred             hccCCEEEccC-CCee
Confidence             4899999985 4443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.58  E-value=4.3e-15  Score=146.40  Aligned_cols=172  Identities=12%  Similarity=0.039  Sum_probs=135.8

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      +++++|+++.  .......+|..+..+++|++|+|++|.+.+  |..+.++++|++|+|++|.+.+ .++..++.+++|+
T Consensus        76 ~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCC
T ss_pred             CCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCC
Confidence            5899999983  123344788899999999999999999985  7778999999999999999854 2455578899999


Q ss_pred             eEEeeecCCcceee--ccccc-cccEEEEEeec--cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616          212 DLSFFYCFGLKRLR--ISEAH-KLKSLILRFTY--QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       212 ~L~L~~c~~~~~l~--~~~l~-~L~~L~l~~~~--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      +|++++|...+.++  +.+++ +|+.|++++|.  +..+.....++ |++|++++|.  +..+..++.+++|+.|++++|
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            99999998754443  44566 89999999987  23333333444 9999999998  556777899999999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      .+++. ++. +..+++|+.|+|++|..
T Consensus       232 ~l~~~-~~~-~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          232 SLAFD-LGK-VGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             EECCB-GGG-CCCCTTCCEEECCSSCC
T ss_pred             ceeee-cCc-ccccCCCCEEECcCCcc
Confidence            99853 333 67889999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=1.3e-15  Score=147.90  Aligned_cols=207  Identities=15%  Similarity=0.067  Sum_probs=141.7

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--  224 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--  224 (531)
                      ....+|..+  .++|++|++++|.+..  +..+.++++|++|++++|.+++. .+..++.+++|++|++++|..++.+  
T Consensus        22 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           22 GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCH
Confidence            345566544  3689999999999887  45678899999999999987432 2344678999999999999755554  


Q ss_pred             -eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCCChhhhhhhhcCCC
Q 009616          225 -RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKFP  299 (531)
Q Consensus       225 -~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  299 (531)
                       .+.++++|++|++++|. ... +.....+++|++|++++|. ...+ ..++.+++|+.|++++|.++. .....+.+++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLH  177 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCcc
Confidence             34567899999999886 222 2233468899999999988 3333 347889999999999998884 3445577889


Q ss_pred             CCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccC
Q 009616          300 LLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDI  374 (531)
Q Consensus       300 ~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~  374 (531)
                      +|+.|++++|........        .+..+++|+.+.++.+++.      +..+..+..+++|+.+++++ ++.
T Consensus       178 ~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~-N~~  237 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPH--------AFRDLGRLMTLYLFANNLS------ALPTEALAPLRALQYLRLND-NPW  237 (285)
T ss_dssp             TCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCS------CCCHHHHTTCTTCCEEECCS-SCE
T ss_pred             ccCEEECCCCcccccCHh--------HccCcccccEeeCCCCcCC------cCCHHHcccCcccCEEeccC-CCc
Confidence            999999998642111000        1222344444444444432      11124466788999999985 443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.57  E-value=5.9e-16  Score=153.93  Aligned_cols=266  Identities=13%  Similarity=0.061  Sum_probs=168.3

Q ss_pred             cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      ++++.|+++.  +  ....+ |..+..+++|++|+|++|.+.+  +..++++++|++|++++|.+..  ++.  ..+++|
T Consensus        54 ~~l~~L~l~~--n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQN--N--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSL  125 (332)
T ss_dssp             TTCCEEECCS--S--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTC
T ss_pred             CCCeEEECCC--C--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccC
Confidence            5789999875  2  23344 4567889999999999999887  5678899999999999998742  222  223899


Q ss_pred             ceEEeeecCCccee--eccccccccEEEEEeec-cc--cceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCC
Q 009616          211 EDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       211 e~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      ++|++++|......  .+.++++|+.|++++|. ..  .........+|++|++++|. ...|..+.  ++|+.|++++|
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n  203 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHN  203 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSS
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCC
Confidence            99999998764322  25578999999999986 11  21222222289999999998 44444333  78999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCc
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPL  364 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~  364 (531)
                      .+++. .+..+.++++|+.|+|++|..-...        .-.+..+++|+.+.++.+++.       .+|..+..+++|+
T Consensus       204 ~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~  267 (332)
T 2ft3_A          204 KIQAI-ELEDLLRYSKLYRLGLGHNQIRMIE--------NGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQ  267 (332)
T ss_dssp             CCCCC-CTTSSTTCTTCSCCBCCSSCCCCCC--------TTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCC
T ss_pred             cCCcc-CHHHhcCCCCCCEEECCCCcCCcCC--------hhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCC
Confidence            98853 3455778899999999986421100        001223344444444444432       2354566788889


Q ss_pred             EEEEEeeccCChhhhhhHHHH--HhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          365 NVLFSNFGDIDTHWYLNLMEF--IGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       365 ~L~l~~~~~~~~~~~~~l~~~--l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      .|++++ +.+.......+...  ....++|+.|++..|...... +++    . .+..+++|+.++++.|
T Consensus       268 ~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~-~~~----~-~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          268 VVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE-VQP----A-TFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             EEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG-SCG----G-GGTTBCCSTTEEC---
T ss_pred             EEECCC-CCCCccChhHccccccccccccccceEeecCcccccc-cCc----c-cccccchhhhhhcccc
Confidence            999885 44443222111000  011466778887766544222 221    1 3455788888888766

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=3.6e-15  Score=147.29  Aligned_cols=243  Identities=18%  Similarity=0.156  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHH--cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechH
Q 009616          122 PLFDKWVELAME--NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQ  198 (531)
Q Consensus       122 ~~~~~wl~~~~~--~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~  198 (531)
                      ..+...+.....  +++++|+++.  +  ....++ ..+..+++|++|+|++|.+.+...+..+++|++|++++|.+++ 
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-   94 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSG--N--PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-   94 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTT--S--CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-
T ss_pred             cchhhhHHHHhccCCCCCEEECcC--C--ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-
Confidence            334444443332  4789999875  2  223344 5677889999999999988772237889999999999998854 


Q ss_pred             hHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-cc-ceeec-cCC
Q 009616          199 MVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VP-RLLDV-AEC  273 (531)
Q Consensus       199 ~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~~-~~~~~-~~~  273 (531)
                           +..+++|++|++++|... .+....+++|+.|++++|. ..+.. ....+++|++|++++|. .. .+..+ ..+
T Consensus        95 -----l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  168 (317)
T 3o53_A           95 -----LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (317)
T ss_dssp             -----EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             -----ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence                 234589999999988753 3444457889999999887 33333 23367889999999988 22 23333 468


Q ss_pred             CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCc
Q 009616          274 PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPI  353 (531)
Q Consensus       274 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~  353 (531)
                      ++|+.|++++|.++..  +. ...+++|+.|+|++|..- .+.   +     .+..+++|+.+.++.+++..       +
T Consensus       169 ~~L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~-~l~---~-----~~~~l~~L~~L~L~~N~l~~-------l  229 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLA-FMG---P-----EFQSAAGVTWISLRNNKLVL-------I  229 (317)
T ss_dssp             TTCCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCC-EEC---G-----GGGGGTTCSEEECTTSCCCE-------E
T ss_pred             CcCCEEECCCCcCccc--cc-ccccccCCEEECCCCcCC-cch---h-----hhcccCcccEEECcCCcccc-------h
Confidence            8999999999888753  22 235888999999886421 000   0     12334455555555555432       2


Q ss_pred             CceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEE
Q 009616          354 PIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLS  398 (531)
Q Consensus       354 p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~  398 (531)
                      |..+..+++|+.+++++ +...   ...++.++..+++|+.|.+.
T Consensus       230 ~~~~~~l~~L~~L~l~~-N~~~---~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRG-NGFH---CGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CTTCCCCTTCCEEECTT-CCCB---HHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHhhcCCCCCEEEccC-CCcc---CcCHHHHHhccccceEEECC
Confidence            44456788999999985 4333   24566788888999888776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=2.1e-15  Score=156.04  Aligned_cols=150  Identities=15%  Similarity=0.038  Sum_probs=63.0

Q ss_pred             cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--ecccccc
Q 009616          156 TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHK  231 (531)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~  231 (531)
                      .+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+..+++|++|+|++|......  .+.++++
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS  161 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence            33444555555555554443  23344455555555555444210 1112344455555555544322111  1223445


Q ss_pred             ccEEEEEeec--cccce-eeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          232 LKSLILRFTY--QELES-VEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       232 L~~L~l~~~~--~~l~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      |+.|++++|.  ..+.. ....+++|++|++++|. ...+ .+..+++|+.|+|++|.+++ ..+..+.++++|+.|+|+
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMI  239 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECC
Confidence            5555554433  11111 11234455555555554 2221 34444555555555554442 222334445555555554


Q ss_pred             c
Q 009616          308 S  308 (531)
Q Consensus       308 ~  308 (531)
                      +
T Consensus       240 ~  240 (440)
T 3zyj_A          240 Q  240 (440)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=1.6e-15  Score=157.40  Aligned_cols=169  Identities=17%  Similarity=0.093  Sum_probs=86.0

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +++.|+|+.  + ......|..+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.++. ..+..+..+++|++
T Consensus        76 ~l~~L~L~~--n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           76 NTRYLNLME--N-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRE  151 (452)
T ss_dssp             TCSEEECCS--S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCE
T ss_pred             CccEEECcC--C-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCE
Confidence            556666553  1 1111223445556666666666666555  3445556666666666665532 11223455666666


Q ss_pred             EEeeecCCccee--eccccccccEEEEEeecccccee----eeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKRL--RISEAHKLKSLILRFTYQELESV----EIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |+|++|......  .+.++++|+.|++++|. .+..+    ...+++|++|++++|.......+..+++|+.|+|++|.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            666665432111  13345666666666544 11111    124556666666666511112455566666666666666


Q ss_pred             ChhhhhhhhcCCCCCcEEEeccc
Q 009616          287 NDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      ++ ..+..+.++++|+.|+|++|
T Consensus       231 ~~-~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          231 PE-IRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             SE-ECGGGGTTCTTCCEEECTTS
T ss_pred             cc-cCcccccCccCCCEEEeCCC
Confidence            53 23344555666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=6.6e-15  Score=154.07  Aligned_cols=230  Identities=18%  Similarity=0.167  Sum_probs=150.9

Q ss_pred             CCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          135 GVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      ++++|+|+.  +  ....+ |..+..+++|++|+|++|.+.+...++.+++|++|+|++|.+++      +...++|++|
T Consensus        35 ~L~~L~Ls~--n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L  104 (487)
T 3oja_A           35 NVKELDLSG--N--PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL  104 (487)
T ss_dssp             GCCEEECCS--S--CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred             CccEEEeeC--C--cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence            688888875  2  22233 45677888888888888888762237788888888888888754      2234888888


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc--ccceeecc-CCCCccEEEEeCCCCCh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR--VPRLLDVA-ECPHLRKLVLFLPHFND  288 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~~~-~~~~L~~L~L~~~~~~~  288 (531)
                      ++++|...+ +....+++|+.|++++|. .... .....+++|++|++++|.  +..+..+. .+++|+.|+|++|.+++
T Consensus       105 ~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          105 HAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             ECCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECcCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            888886544 333456888888888887 3332 233467888888888887  33344454 67888888888888875


Q ss_pred             hhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEE
Q 009616          289 QEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLF  368 (531)
Q Consensus       289 ~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l  368 (531)
                      .  +. ...+++|+.|+|++|..-. +.   +     .+..+++|+.++++.+++..       +|..+..+++|+.+++
T Consensus       184 ~--~~-~~~l~~L~~L~Ls~N~l~~-~~---~-----~~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          184 V--KG-QVVFAKLKTLDLSSNKLAF-MG---P-----EFQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             E--EC-CCCCTTCCEEECCSSCCCE-EC---G-----GGGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEEC
T ss_pred             c--cc-cccCCCCCEEECCCCCCCC-CC---H-----hHcCCCCccEEEecCCcCcc-------cchhhccCCCCCEEEc
Confidence            3  22 3357888888888864211 00   0     12234455555555555432       3555667889999999


Q ss_pred             EeeccCChhhhhhHHHHHhhccccceeEEE
Q 009616          369 SNFGDIDTHWYLNLMEFIGAFNQIGELHLS  398 (531)
Q Consensus       369 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~  398 (531)
                      ++ +...   .+.++.++..++.|+.+.+.
T Consensus       245 ~~-N~l~---c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RG-NGFH---CGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TT-CCBC---HHHHHHHHTTCHHHHHHHHH
T ss_pred             CC-CCCc---CcchHHHHHhCCCCcEEecc
Confidence            85 3333   24556777888888877653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=1.1e-14  Score=151.27  Aligned_cols=216  Identities=19%  Similarity=0.155  Sum_probs=147.3

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-  224 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-  224 (531)
                      .....+|..+.  ++|++|+|++|.+.+  +..+.++++|++|+|++|.+... .+..+.++++|++|+|++|...... 
T Consensus        64 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~  140 (452)
T 3zyi_A           64 RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPS  140 (452)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred             CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccCh
Confidence            34566776554  689999999999987  66788999999999999988532 2344788999999999999753322 


Q ss_pred             -eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccce-eeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616          225 -RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPRL-LDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (531)
Q Consensus       225 -~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  298 (531)
                       .+.++++|++|++++|. ..++. ....+++|++|++++|.  ...+ ..+.++++|+.|+|++|.+++-  + .+..+
T Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l  217 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPL  217 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTC
T ss_pred             hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-ccccc
Confidence             24568999999999997 33322 23468999999999966  3332 3588999999999999999852  3 36788


Q ss_pred             CCCcEEEeccccch---hHHHhcCcccceeccccccchhhhc----ccCCCcceeEeecCCc---C-ceecCCCCCcEEE
Q 009616          299 PLLEDLSIISLETL---ERIMISSNRLMHLEVYNCSGLNRIN----VDAPNLVSFDFEDNPI---P-IVSTNAPCPLNVL  367 (531)
Q Consensus       299 ~~L~~L~L~~c~~l---~~l~~~~~~L~~L~l~~c~~L~~l~----~~~~nL~sl~~~~~~~---p-~~~~~~~~L~~L~  367 (531)
                      ++|+.|+|++|...   .......++|+.|++.++. +..+.    -..++|+.+.+.+..+   | ..+..+++|+.|+
T Consensus       218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             ccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence            99999999998531   2222234566777665532 11111    1123444444444333   1 3344566666666


Q ss_pred             EEe
Q 009616          368 FSN  370 (531)
Q Consensus       368 l~~  370 (531)
                      +++
T Consensus       297 L~~  299 (452)
T 3zyi_A          297 LHH  299 (452)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.55  E-value=2.5e-14  Score=148.24  Aligned_cols=155  Identities=15%  Similarity=0.053  Sum_probs=88.0

Q ss_pred             CCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEee
Q 009616          161 KLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFT  240 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~  240 (531)
                      ++|++|++++|.+.+.+.++++++|++|++++|.+.+  ++.   ..++|++|++++|...+-..+.++++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4666666666666662246666777777777666532  221   23466777776665433223445677777777766


Q ss_pred             c-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHHHhc
Q 009616          241 Y-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERIMIS  318 (531)
Q Consensus       241 ~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~  318 (531)
                      . ..++.   ..++|++|++++|. ...| .++.+++|+.|++++|.+++  ++.   ..++|+.|++++|.. ..+...
T Consensus       206 ~l~~l~~---~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l-~~l~~~  275 (454)
T 1jl5_A          206 SLKKLPD---LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYL-TDLPEL  275 (454)
T ss_dssp             CCSSCCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCC-SCCCCC
T ss_pred             cCCcCCC---CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCcc-cccCcc
Confidence            5 22222   23567777777776 4333 46677777777777777663  121   235677777766542 112222


Q ss_pred             Ccccceeccccc
Q 009616          319 SNRLMHLEVYNC  330 (531)
Q Consensus       319 ~~~L~~L~l~~c  330 (531)
                      .++|+.|+++++
T Consensus       276 ~~~L~~L~ls~N  287 (454)
T 1jl5_A          276 PQSLTFLDVSEN  287 (454)
T ss_dssp             CTTCCEEECCSS
T ss_pred             cCcCCEEECcCC
Confidence            345666666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=150.41  Aligned_cols=176  Identities=18%  Similarity=0.129  Sum_probs=129.3

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-  224 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-  224 (531)
                      .....+|..+.  ++++.|+|++|.+..  +..+.++++|++|+|++|.+... .+..+.++++|++|+|++|...... 
T Consensus        53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~  129 (440)
T 3zyj_A           53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPN  129 (440)
T ss_dssp             CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred             CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCH
Confidence            45567787665  689999999999987  56788999999999999988432 2234788999999999998653322 


Q ss_pred             -eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616          225 -RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (531)
Q Consensus       225 -~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  298 (531)
                       .+.++++|+.|++++|. ..++. ....+++|++|++++|.  ... +..+.++++|+.|++++|.++.  ++ .+..+
T Consensus       130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l  206 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPL  206 (440)
T ss_dssp             TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTC
T ss_pred             hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCC
Confidence             24578999999999996 33322 23368999999999966  322 2358899999999999999884  23 36788


Q ss_pred             CCCcEEEeccccchh---HHHhcCcccceecccc
Q 009616          299 PLLEDLSIISLETLE---RIMISSNRLMHLEVYN  329 (531)
Q Consensus       299 ~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~  329 (531)
                      ++|+.|+|++|..-.   ......++|+.|++.+
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence            999999999975311   1112235566666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=2.2e-15  Score=157.62  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=115.5

Q ss_pred             cCCccccC----CCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          152 ALPQTIFS----AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       152 ~lp~~l~~----~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      .+|..+..    +++|++|+|++|.+.+  +..++++++|++|+|++|.+++. .+  ++.+++|++|+|++|.. ..+.
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l-~~l~   96 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYV-QELL   96 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEE-EEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcC-CCCC
Confidence            34544443    3589999999999988  45788999999999999988432 22  78899999999999854 3333


Q ss_pred             ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCc
Q 009616          226 ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLE  302 (531)
Q Consensus       226 ~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~  302 (531)
                      .  .++|+.|++++|. ....  ...+++|+.|++++|.  +..+..++++++|+.|+|++|.+++..+..+..++++|+
T Consensus        97 ~--~~~L~~L~L~~N~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           97 V--GPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             E--CTTCCEEECCSSCCCCEE--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             C--CCCcCEEECcCCcCCCCC--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence            3  3899999999986 2222  1246889999999998  445667888999999999999998755555555788999


Q ss_pred             EEEecccc
Q 009616          303 DLSIISLE  310 (531)
Q Consensus       303 ~L~L~~c~  310 (531)
                      .|+|++|.
T Consensus       173 ~L~Ls~N~  180 (487)
T 3oja_A          173 HLNLQYNF  180 (487)
T ss_dssp             EEECTTSC
T ss_pred             EEecCCCc
Confidence            99998864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.52  E-value=1.8e-14  Score=139.97  Aligned_cols=171  Identities=16%  Similarity=0.111  Sum_probs=124.8

Q ss_pred             cCCcEEEEeeecCCCccccCC-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEE-echHhHHHHHhCCcc
Q 009616          134 NGVKELDFEVITDKNSVNALP-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRV  209 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~~~~  209 (531)
                      +++++|+++.    .....+| ..+..+++|++|+|++|.+.+  +..+.++++|++|++++|. +.. ..+..+..+++
T Consensus        32 ~~l~~L~l~~----n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLGR  106 (285)
T ss_dssp             TTCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCTT
T ss_pred             CCceEEEeeC----CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCCcC
Confidence            4788888865    2233444 456778899999999998876  5677889999999999886 432 12344678899


Q ss_pred             cceEEeeecCCcceee--ccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeC
Q 009616          210 LEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFL  283 (531)
Q Consensus       210 Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~  283 (531)
                      |++|++++|...+...  +.++++|++|++++|. ..+.. ....+++|++|++++|. ...+ ..+..+++|+.|++++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            9999999887544322  4567899999999886 33322 23367899999999987 3333 3478889999999999


Q ss_pred             CCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          284 PHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      |.+++ ..+..+.++++|+.|++++|.
T Consensus       187 n~l~~-~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          187 NRVAH-VHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             SCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred             Ccccc-cCHhHccCcccccEeeCCCCc
Confidence            98885 335567788999999998874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.1e-14  Score=140.38  Aligned_cols=171  Identities=16%  Similarity=0.135  Sum_probs=130.3

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++++|++..  .  ....++ .+..+++|++|++++|.+.+.+.+.++++|++|++++|.+++ ..+..++.+++|++
T Consensus        40 l~~L~~L~l~~--~--~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQIIANN--S--DIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCE
T ss_pred             ccceeeeeeCC--C--Cccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCE
Confidence            46889988865  1  222333 477889999999999999886678899999999999998853 23344678999999


Q ss_pred             EEeeecCCcceee--ccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |++++|...+...  +.++++|+.|++++|. ..++. ....+++|++|++++|.  ...+..++.+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            9999987644322  4568899999999987 33332 23468899999999998  33333478899999999999998


Q ss_pred             ChhhhhhhhcCCCCCcEEEecccc
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++ ..+..+.++++|+.|++++|.
T Consensus       194 ~~-~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KS-VPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             Cc-cCHHHHhCCcCCCEEEccCCC
Confidence            84 455667889999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=2.1e-15  Score=148.63  Aligned_cols=237  Identities=16%  Similarity=0.061  Sum_probs=152.6

Q ss_pred             CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHh-------CCcccceEEeeecCCcceee--c--c
Q 009616          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVR-------ECRVLEDLSFFYCFGLKRLR--I--S  227 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~-------~~~~Le~L~L~~c~~~~~l~--~--~  227 (531)
                      ..++|++|++++|.+..|..+...  |++|+|++|.+....++..+.       ++++|++|+|++|...+.++  +  .
T Consensus        41 ~~~~L~~l~l~~n~l~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTEADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEEECTTHHHHCCTTCCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             cCCCceeEeecccccccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            346788888888888224433322  888888888873322333333       78999999999997654332  2  5


Q ss_pred             ccccccEEEEEeec-cccceeeeeC-----CcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhh--hhhh-hc
Q 009616          228 EAHKLKSLILRFTY-QELESVEIAV-----PSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQE--FHPL-IS  296 (531)
Q Consensus       228 ~l~~L~~L~l~~~~-~~l~~~~~~~-----~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~-l~  296 (531)
                      ++++|++|++++|. ...+.....+     ++|++|++++|.  ...+..++.+++|+.|++++|.+++..  +..+ +.
T Consensus       119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            68899999999987 3333322233     899999999998  333467889999999999999987642  2222 27


Q ss_pred             CCCCCcEEEeccccch--hHHH----hcCcccceeccccccchhhhcccCCCcceeEeecCCcC-ceecCCCCCcEEEEE
Q 009616          297 KFPLLEDLSIISLETL--ERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIP-IVSTNAPCPLNVLFS  369 (531)
Q Consensus       297 ~~~~L~~L~L~~c~~l--~~l~----~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p-~~~~~~~~L~~L~l~  369 (531)
                      ++++|+.|+|++|..-  ..+.    ...++|+.|++++           +++.      +..| ..+..+++|+.|+++
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-----------N~l~------~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-----------NSLR------DAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-----------SCCC------SSCCCSCCCCCTTCCEEECT
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-----------CcCC------cccchhhhhhcCCCCEEECC
Confidence            8899999999987532  1221    1224444444443           3331      1112 233346889999998


Q ss_pred             eeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          370 NFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       370 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      + +.+.. ...    .+.  ++|+.|+++.|....   +|       .+..+++|++|+|..|
T Consensus       262 ~-N~l~~-ip~----~~~--~~L~~L~Ls~N~l~~---~p-------~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          262 F-TGLKQ-VPK----GLP--AKLSVLDLSYNRLDR---NP-------SPDELPQVGNLSLKGN  306 (312)
T ss_dssp             T-SCCSS-CCS----SCC--SEEEEEECCSSCCCS---CC-------CTTTSCEEEEEECTTC
T ss_pred             C-CccCh-hhh----hcc--CCceEEECCCCCCCC---Ch-------hHhhCCCCCEEeccCC
Confidence            5 44431 111    111  688888888665433   34       3567788999998887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.51  E-value=5.7e-15  Score=145.83  Aligned_cols=211  Identities=16%  Similarity=0.095  Sum_probs=120.2

Q ss_pred             CCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          159 SAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      .+++|++|+|++|.+.+  +..+.++++|++|+|++|.+.+.. +  +..+++|++|++++|.. ..+.  ..++|+.|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l-~~l~--~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYV-QELL--VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEE-EEEE--ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCcc-cccc--CCCCcCEEE
Confidence            34577777777777766  235666777777777777663211 1  56677777777776643 2222  236666666


Q ss_pred             EEeecccccee-eeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchh
Q 009616          237 LRFTYQELESV-EIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLE  313 (531)
Q Consensus       237 l~~~~~~l~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~  313 (531)
                      +++|.  +..+ ...+++|++|++++|.  ...+..++.+++|+.|++++|.+++.....+...+++|+.|+|++|.   
T Consensus       106 l~~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~---  180 (317)
T 3o53_A          106 AANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF---  180 (317)
T ss_dssp             CCSSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC---
T ss_pred             CCCCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc---
Confidence            66664  1111 1134566666666665  22334555666666666666666643333333455666666665532   


Q ss_pred             HHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccc
Q 009616          314 RIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIG  393 (531)
Q Consensus       314 ~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~  393 (531)
                                                   +..+       + ....+++|++|++++ +.+....     ..+..+++|+
T Consensus       181 -----------------------------l~~~-------~-~~~~l~~L~~L~Ls~-N~l~~l~-----~~~~~l~~L~  217 (317)
T 3o53_A          181 -----------------------------IYDV-------K-GQVVFAKLKTLDLSS-NKLAFMG-----PEFQSAAGVT  217 (317)
T ss_dssp             -----------------------------CCEE-------E-CCCCCTTCCEEECCS-SCCCEEC-----GGGGGGTTCS
T ss_pred             -----------------------------Cccc-------c-cccccccCCEEECCC-CcCCcch-----hhhcccCccc
Confidence                                         1111       0 011255667777764 3333211     1255678888


Q ss_pred             eeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          394 ELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       394 ~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      .|+++.|...  . +|      ..+..+++|++|+++.|
T Consensus       218 ~L~L~~N~l~--~-l~------~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          218 WISLRNNKLV--L-IE------KALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             EEECTTSCCC--E-EC------TTCCCCTTCCEEECTTC
T ss_pred             EEECcCCccc--c-hh------hHhhcCCCCCEEEccCC
Confidence            8888766544  2 66      24566789999999988

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.49  E-value=4.1e-14  Score=152.93  Aligned_cols=170  Identities=16%  Similarity=0.088  Sum_probs=93.1

Q ss_pred             eCCcccEEEecccc----ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHH----HhcCcc
Q 009616          250 AVPSLQQLELSFSR----VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI----MISSNR  321 (531)
Q Consensus       250 ~~~~L~~L~l~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l----~~~~~~  321 (531)
                      .+++|+.|+++.|.    +..+..+..+.+|+.+++..+....  ....+..+++|+.+++..+......    ......
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~  446 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  446 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhcccccccc--ccccccccccccchhhhhccccccccccccccccc
Confidence            46789999998887    2233445567788888887666543  2233556777888877765432211    112234


Q ss_pred             cceeccccccc--h-hhhcccCCCcceeEeecCC-----cCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccc
Q 009616          322 LMHLEVYNCSG--L-NRINVDAPNLVSFDFEDNP-----IPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIG  393 (531)
Q Consensus       322 L~~L~l~~c~~--L-~~l~~~~~nL~sl~~~~~~-----~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~  393 (531)
                      ++.+++..+.-  . ....-..++++.+.+.+..     .|..+..+++|+.|++++ +.+.+.    .+..+.++++|+
T Consensus       447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N~L~~l----~~~~f~~l~~L~  521 (635)
T 4g8a_A          447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQL----SPTAFNSLSSLQ  521 (635)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEE----CTTTTTTCTTCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-CccCCc----ChHHHcCCCCCC
Confidence            44554443210  0 0111122334444443322     244556677888888874 333332    223456777888


Q ss_pred             eeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeee
Q 009616          394 ELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSL  434 (531)
Q Consensus       394 ~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~  434 (531)
                      .|+|+.|....   +|+.     .+..+++|++|+|+.|..
T Consensus       522 ~L~Ls~N~l~~---l~~~-----~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          522 VLNMSHNNFFS---LDTF-----PYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             EEECTTSCCCB---CCCG-----GGTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCC---CChh-----HHhCCCCCCEEECCCCcC
Confidence            88777655433   3311     244567788888877743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=1.2e-14  Score=147.50  Aligned_cols=59  Identities=10%  Similarity=0.044  Sum_probs=30.3

Q ss_pred             CcccEEEecccc-c--cce---eeccCCCCccEEEEeCCCCChhh----hhhhhcCCCCCcEEEecccc
Q 009616          252 PSLQQLELSFSR-V--PRL---LDVAECPHLRKLVLFLPHFNDQE----FHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       252 ~~L~~L~l~~~~-~--~~~---~~~~~~~~L~~L~L~~~~~~~~~----~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++|++|++++|. .  ..+   ..+..+++|+.|++++|.++...    .+..+..+++|+.|+|++|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~  227 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  227 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence            556666665555 1  111   23445556666666666665432    12134455666666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.48  E-value=1.3e-13  Score=135.53  Aligned_cols=166  Identities=15%  Similarity=0.173  Sum_probs=130.4

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      ..++++|++..    .....+| .+..+++|++|+|++|.+.+.+.+..+++|++|+|++|.+.+  ++ .+..+++|++
T Consensus        40 l~~L~~L~l~~----~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLSAFG----TGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEECTT----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCE
T ss_pred             cCCcCEEEeeC----CCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC--ch-hhcCCCCCCE
Confidence            45899999875    2334455 577899999999999999883338899999999999998854  22 3788999999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |++++|.......+.++++|+.|++++|. ..+.. ...+++|++|++++|. ...+ .+..+++|+.|++++|.+++-.
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcCh
Confidence            99999976554446778999999999997 33333 3478999999999998 3333 2889999999999999998532


Q ss_pred             hhhhhcCCCCCcEEEeccccc
Q 009616          291 FHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~  311 (531)
                        . +..+++|+.|++++|..
T Consensus       190 --~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          190 --P-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             --G-GGGCTTCCEEECTTSCC
T ss_pred             --h-hcCCCCCCEEEccCCcc
Confidence              2 67899999999999753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.48  E-value=1.4e-13  Score=147.28  Aligned_cols=234  Identities=15%  Similarity=0.056  Sum_probs=133.0

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++.|+++.  +  ....+|.   .+++|++|+|++|.+.. |.   .+++|++|+|++|.++.  ++.   .+++|+.
T Consensus        61 ~~L~~L~L~~--N--~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPD--N--NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECS--C--CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCE
T ss_pred             CCCcEEEecC--C--CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCE
Confidence            5889998875  2  3346776   46889999999998877 43   67899999999887743  222   5688888


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |++++|... .++. .+++|+.|++++|. ..++   ...++|+.|++++|. ..++   ..+++|+.|++++|.+++  
T Consensus       126 L~L~~N~l~-~lp~-~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~--  195 (622)
T 3g06_A          126 LWIFGNQLT-SLPV-LPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS--  195 (622)
T ss_dssp             EECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--
T ss_pred             EECCCCCCC-cCCC-CCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC--
Confidence            888887643 2332 24788888888875 2222   234667777777776 3333   445667777777776653  


Q ss_pred             hhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616          291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN  370 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~  370 (531)
                      ++   ...++|+.|++++|.. ..+....++|+.|+++++ ++..+.-..++|+.+.+++..+......+++|+.|++++
T Consensus       196 l~---~~~~~L~~L~L~~N~l-~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~  270 (622)
T 3g06_A          196 LP---TLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYR  270 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             CC---CccchhhEEECcCCcc-cccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCC
Confidence            11   1235566666665432 122222345555555543 233333333444444444443321001345566666653


Q ss_pred             eccCChhhhhhHHHHHhhccccceeEEEeeeee
Q 009616          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQ  403 (531)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~  403 (531)
                       +.+.     .++..+.++++|+.|+|+.|...
T Consensus       271 -N~L~-----~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          271 -NQLT-----RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             -SCCC-----SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             -CCCC-----cCCHHHhhccccCEEEecCCCCC
Confidence             3222     11223445556666655555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.48  E-value=1.3e-13  Score=135.49  Aligned_cols=145  Identities=18%  Similarity=0.182  Sum_probs=103.5

Q ss_pred             cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l  237 (531)
                      ..+++|++|++++|.+...+.+..+++|++|+|++|.+.+  ++. +..+++|++|++++|.....-.+..+++|+.|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence            3568999999999998875578889999999999998854  223 7899999999999987544334556778888888


Q ss_pred             Eeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          238 RFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++|. ..++. ...+++|++|++++|. ...+ .++.+++|+.|++++|.+++-  .. +.++++|+.|++++|.
T Consensus       115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC
T ss_pred             CCCCCCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCc
Confidence            8776 33322 2356777777777776 2222 266777777777777777642  22 5667777777777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.47  E-value=6.3e-15  Score=145.16  Aligned_cols=149  Identities=21%  Similarity=0.102  Sum_probs=80.0

Q ss_pred             CCCCccEEEecCCcCCC--CcCC--CCCCccCEEEeeeEEechHhHHHHHhCC-----cccceEEeeecCCccee--ecc
Q 009616          159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQMVQSLVREC-----RVLEDLSFFYCFGLKRL--RIS  227 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~~l~~~l~~~-----~~Le~L~L~~c~~~~~l--~~~  227 (531)
                      .+++|++|+|++|.+.+  |..+  +.+++|++|+|++|.+++.  +..++.+     ++|++|++++|...+..  .+.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            57888888888888875  5544  7788888888888887442  2223333     77778887777653322  233


Q ss_pred             ccccccEEEEEeec-cc---cc-eee-eeCCcccEEEecccc-c---cce-eeccCCCCccEEEEeCCCCChhhhhhhhc
Q 009616          228 EAHKLKSLILRFTY-QE---LE-SVE-IAVPSLQQLELSFSR-V---PRL-LDVAECPHLRKLVLFLPHFNDQEFHPLIS  296 (531)
Q Consensus       228 ~l~~L~~L~l~~~~-~~---l~-~~~-~~~~~L~~L~l~~~~-~---~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~  296 (531)
                      ++++|+.|++++|. .+   .. .+. ..+++|++|++++|. .   ..+ ..+..+++|+.|++++|.+++......+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            45666666666664 11   01 111 234555555555554 1   111 11234455555555555554322112233


Q ss_pred             CCCCCcEEEeccc
Q 009616          297 KFPLLEDLSIISL  309 (531)
Q Consensus       297 ~~~~L~~L~L~~c  309 (531)
                      .+++|+.|+|++|
T Consensus       251 ~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          251 WPSQLNSLNLSFT  263 (312)
T ss_dssp             CCTTCCEEECTTS
T ss_pred             hcCCCCEEECCCC
Confidence            3455555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.45  E-value=2.2e-13  Score=132.53  Aligned_cols=199  Identities=17%  Similarity=0.077  Sum_probs=126.5

Q ss_pred             ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L  235 (531)
                      +.+++++++++++++.+.. |..+  .+++++|+|++|.++.. .+..+..+++|++|+|++|..........+++|+.|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            4456777888888777766 4433  36778888887776432 223466778888888877765333333467788888


Q ss_pred             EEEeec-cccceeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616          236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL  312 (531)
Q Consensus       236 ~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l  312 (531)
                      ++++|. ..++.....+++|++|++++|. ... +..++++++|+.|+|++|.++. .....+..+++|+.|+|+++.. 
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l-  160 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL-  160 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcC-
Confidence            888876 4444444467888888888887 333 3457888888888888888873 4455567788888888887542 


Q ss_pred             hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCC
Q 009616          313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDID  375 (531)
Q Consensus       313 ~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~  375 (531)
                      ..+..       -.+..+++|+.+.++.++++       .+|..+...++|+.+++++ ++..
T Consensus       161 ~~l~~-------~~~~~l~~L~~L~L~~N~l~-------~ip~~~~~~~~L~~l~L~~-Np~~  208 (290)
T 1p9a_G          161 TELPA-------GLLNGLENLDTLLLQENSLY-------TIPKGFFGSHLLPFAFLHG-NPWL  208 (290)
T ss_dssp             SCCCT-------TTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCCCSEEECCS-CCBC
T ss_pred             CccCH-------HHhcCcCCCCEEECCCCcCC-------ccChhhcccccCCeEEeCC-CCcc
Confidence            11100       00122344445555554442       2344455567899999985 4443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=2.3e-13  Score=131.03  Aligned_cols=169  Identities=20%  Similarity=0.148  Sum_probs=84.0

Q ss_pred             CCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC-Cc-CCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          135 GVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      ++++|+++.    .....+|. .+..+++|++|+|++|.+.. +. .+.++++|++|++++|.+..- ....+..+++|+
T Consensus        38 ~l~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~  112 (270)
T 2o6q_A           38 DTKKLDLQS----NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLA  112 (270)
T ss_dssp             TCSEEECCS----SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCC
T ss_pred             CCCEEECcC----CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCC
Confidence            455555543    11223332 44455666666666665555 22 234566666666666655321 122345566666


Q ss_pred             eEEeeecCCccee--eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCC
Q 009616          212 DLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPH  285 (531)
Q Consensus       212 ~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~  285 (531)
                      +|++++|......  .+.++++|+.|++++|. ..++. ....+++|++|++++|. ... +..+..+++|+.|++++|.
T Consensus       113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            6666655432221  12345566666666654 22221 12245566666666655 222 2235556666666666665


Q ss_pred             CChhhhhhhhcCCCCCcEEEeccc
Q 009616          286 FNDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       286 ~~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      ++. .....+..+++|+.|+|+++
T Consensus       193 l~~-~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          193 LKR-VPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSS
T ss_pred             CCc-CCHHHhccccCCCEEEecCC
Confidence            552 23334455566666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=2.5e-13  Score=130.70  Aligned_cols=168  Identities=18%  Similarity=0.151  Sum_probs=125.3

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +.+.++++.    .....+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++. .....+..+++|++
T Consensus        17 ~~~~l~~~~----~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSS----KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTT----SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCE
T ss_pred             CCCEEEccC----CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCE
Confidence            456666643    33456776554  689999999999987  3468899999999999998843 22334578999999


Q ss_pred             EEeeecCCccee--eccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~  286 (531)
                      |++++|......  .+.++++|++|++++|. ..+. .....+++|++|++++|. ...+ ..++.+++|+.|++++|.+
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            999998753321  23467899999999987 3332 223468999999999998 3333 3478899999999999988


Q ss_pred             ChhhhhhhhcCCCCCcEEEecccc
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +. .....+.++++|+.|+|++|.
T Consensus       170 ~~-~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          170 KR-VPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             SC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             cE-eChhHhccCCCcCEEECCCCc
Confidence            84 344557788999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.43  E-value=1.9e-13  Score=129.02  Aligned_cols=145  Identities=14%  Similarity=0.071  Sum_probs=75.0

Q ss_pred             CccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEE-echHhHHHHHhCCcccceEEeeecCCcceee---ccccccccEE
Q 009616          162 LLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVLEDLSFFYCFGLKRLR---ISEAHKLKSL  235 (531)
Q Consensus       162 ~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~---~~~l~~L~~L  235 (531)
                      +|++|++++|.+.+ + ..+.++++|++|++++|. ++. ..+..+.++++|++|++++|..+..+.   +.++++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            56666666666655 2 245556666666666664 321 111124556666666666633333332   2245666666


Q ss_pred             EEEeec-cccceeeeeCCccc---EEEeccc-c-ccce-eeccCCCCcc-EEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          236 ILRFTY-QELESVEIAVPSLQ---QLELSFS-R-VPRL-LDVAECPHLR-KLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       236 ~l~~~~-~~l~~~~~~~~~L~---~L~l~~~-~-~~~~-~~~~~~~~L~-~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      ++++|. ..++. ...+++|+   +|++++| . ...+ ..+.++++|+ .|++++|.++ ......+.. ++|+.|+++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            666665 23332 22444555   6666666 4 2222 2355666666 6666666665 222233333 566666666


Q ss_pred             ccc
Q 009616          308 SLE  310 (531)
Q Consensus       308 ~c~  310 (531)
                      +|.
T Consensus       188 ~n~  190 (239)
T 2xwt_C          188 KNK  190 (239)
T ss_dssp             TCT
T ss_pred             CCC
Confidence            653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=138.29  Aligned_cols=171  Identities=17%  Similarity=0.153  Sum_probs=124.3

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      +++++|+++.    .....+|. .+..+++|++|++++|.+.+  +..+.++++|++|+|++|.++. .....++++++|
T Consensus        52 ~~L~~L~l~~----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSN----NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTT----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred             ccCcEEECCC----CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence            4788888865    22344554 67788999999999998877  4567888999999999988853 234457889999


Q ss_pred             ceEEeeecCCccee---eccccccccEEEEEeec--cccc-eeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEe
Q 009616          211 EDLSFFYCFGLKRL---RISEAHKLKSLILRFTY--QELE-SVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLF  282 (531)
Q Consensus       211 e~L~L~~c~~~~~l---~~~~l~~L~~L~l~~~~--~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~  282 (531)
                      ++|++++|......   .+.++++|++|++++|.  ..+. .....+++|++|++++|.  +..+..++.+++|+.|+++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            99999888653321   24567899999999884  2222 223367889999999887  3345678888889999998


Q ss_pred             CCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          283 LPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       283 ~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +|.++. .....+..+++|+.|++++|.
T Consensus       207 ~n~l~~-~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          207 MKQHIL-LLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             CSCSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred             CCcccc-chhhhhhhcccccEEECCCCc
Confidence            888763 344455567888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=2.6e-13  Score=130.95  Aligned_cols=159  Identities=13%  Similarity=0.039  Sum_probs=108.0

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-  224 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-  224 (531)
                      .....+|..+.  ++|++|++++|.+.+  +..+.++++|++|++++|.+... .+..+..+++|++|++++|...+.. 
T Consensus        17 ~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           17 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             SCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccCh
Confidence            34556776553  579999999998887  34778899999999999987431 2234678899999999988753322 


Q ss_pred             -eccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc-c--cceeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616          225 -RISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR-V--PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (531)
Q Consensus       225 -~~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  298 (531)
                       .+.++++|++|++++|. ..+.. ....+++|++|++++|. .  ..+..++.+++|+.|++++|.+++. ....+..+
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l  172 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL  172 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHH
T ss_pred             hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhh
Confidence             24567888888888776 33332 23367788888888887 2  2466778888888888888887742 22223333


Q ss_pred             CCCc----EEEecccc
Q 009616          299 PLLE----DLSIISLE  310 (531)
Q Consensus       299 ~~L~----~L~L~~c~  310 (531)
                      ++|+    .|+++++.
T Consensus       173 ~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             HTCTTCCEEEECCSSC
T ss_pred             hhccccceeeecCCCc
Confidence            3444    67776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.42  E-value=2.6e-13  Score=140.60  Aligned_cols=269  Identities=15%  Similarity=0.088  Sum_probs=168.6

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .++++|+++.  +  ....+| .+..+++|++|++++|.+.+ |..   .++|++|++++|.+.+  ++. ++++++|++
T Consensus       131 ~~L~~L~L~~--n--~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSN--N--QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE--LPE-LQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCS--S--CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS--CCC-CTTCTTCCE
T ss_pred             CCCCEEECcC--C--CCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc--Ccc-ccCCCCCCE
Confidence            5899999976  2  334578 58899999999999999887 432   4699999999998854  343 789999999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |++++|...+ ++. ..++|+.|++++|. ..++. ...+++|++|++++|. ...+.   ..++|+.|++++|.+++  
T Consensus       200 L~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~--  271 (454)
T 1jl5_A          200 IYADNNSLKK-LPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD--  271 (454)
T ss_dssp             EECCSSCCSS-CCC-CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC--
T ss_pred             EECCCCcCCc-CCC-CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc--
Confidence            9999997644 221 13689999999997 44443 3478999999999998 33332   34789999999998875  


Q ss_pred             hhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616          291 FHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN  370 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~  370 (531)
                      ++.   ..++|+.|++++|.. ..+....++|+.|++.++. +..+.--.++|+.+.+.+..+......+++|+.|++++
T Consensus       272 l~~---~~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~  346 (454)
T 1jl5_A          272 LPE---LPQSLTFLDVSENIF-SGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF  346 (454)
T ss_dssp             CCC---CCTTCCEEECCSSCC-SEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             cCc---ccCcCCEEECcCCcc-CcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCC
Confidence            222   347899999998753 2222223678888887653 22222111366666666554431111257899999985


Q ss_pred             eccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCC--------CCCcccceEEEEEeeecc
Q 009616          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSL--------PLQVESLSLFMESFSLYM  436 (531)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~--------~~~~~L~~L~L~~~~~~~  436 (531)
                       +....     ++.   .+++|+.|+++.|...+.-.+|..+... ..        ..+++|++|+++.|...+
T Consensus       347 -N~l~~-----lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L-~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          347 -NHLAE-----VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL-RMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -SCCSC-----CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE-ECCC------------------------
T ss_pred             -Ccccc-----ccc---hhhhccEEECCCCCCCcCCCChHHHHhh-hhcccccccccccCcCCEEECCCCcCCc
Confidence             44432     111   4688999999877766521266333221 00        112789999999885543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=135.70  Aligned_cols=181  Identities=21%  Similarity=0.145  Sum_probs=130.8

Q ss_pred             hhHHHHHHHHHHcCCcEEEEeeecCCCccccCCccc--cCCCCccEEEecCCcCCC--C----cCCCCCCccCEEEeeeE
Q 009616          122 PLFDKWVELAMENGVKELDFEVITDKNSVNALPQTI--FSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEV  193 (531)
Q Consensus       122 ~~~~~wl~~~~~~~l~~L~L~~~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~  193 (531)
                      ..+..........++++|+++.   .......|..+  ..+++|++|+|++|.+.+  +    ..+..+++|++|+|++|
T Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~---n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           79 QLLVGALRVLAYSRLKELTLED---LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEES---CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             HHHHHHHHhcccCceeEEEeeC---CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            4455555555567899999986   23334566666  778999999999998876  2    22346899999999999


Q ss_pred             EechHhHHHHHhCCcccceEEeeecCCcce------eeccccccccEEEEEeec-ccccee----eeeCCcccEEEeccc
Q 009616          194 YVNDQMVQSLVRECRVLEDLSFFYCFGLKR------LRISEAHKLKSLILRFTY-QELESV----EIAVPSLQQLELSFS  262 (531)
Q Consensus       194 ~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~------l~~~~l~~L~~L~l~~~~-~~l~~~----~~~~~~L~~L~l~~~  262 (531)
                      .+.. ..+..++.+++|++|+|++|...+.      ..+..+++|++|++++|. ..++..    ...+++|++|++++|
T Consensus       156 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          156 HSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             Ccch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            8843 2334467899999999999986442      223467899999999997 322332    236799999999999


Q ss_pred             c--ccceeeccCC---CCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          263 R--VPRLLDVAEC---PHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       263 ~--~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      .  ...|..++.+   ++|+.|+|++|.++ .. +..+  +++|+.|+|++|.
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l-p~~~--~~~L~~L~Ls~N~  283 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV-PKGL--PAKLRVLDLSSNR  283 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC-CSCC--CSCCSCEECCSCC
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCC-ch-hhhh--cCCCCEEECCCCc
Confidence            8  3335556666   69999999999998 33 3323  3799999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.40  E-value=3.8e-13  Score=129.58  Aligned_cols=150  Identities=16%  Similarity=0.104  Sum_probs=119.9

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccE
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKS  234 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~  234 (531)
                      ...+++|+.|++++|.+...+.+..+++|++|++++|.+.+  ++ .+..+++|++|++++|...+...  +.++++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            34578999999999998876678899999999999999854  22 47899999999999997543322  457899999


Q ss_pred             EEEEeec-cccce-eeeeCCcccEEEecccc-c-cceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          235 LILRFTY-QELES-VEIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       235 L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      |++++|. ..++. ....+++|++|++++|. . ..+..++.+++|+.|++++|.+++ ..+..+.++++|+.|++++|.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc
Confidence            9999997 33322 23468999999999998 3 333347899999999999999984 455667889999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.40  E-value=1.6e-14  Score=146.67  Aligned_cols=248  Identities=10%  Similarity=0.120  Sum_probs=130.0

Q ss_pred             cCCccccCCCCccEEEecCCcCCC--C----cCCCCCCccCEEEeeeEEe---chH------hHHHHHhCCcccceEEee
Q 009616          152 ALPQTIFSAKLLTSLKLFGCKLEQ--P----SHCANLQSLKKLSLDEVYV---NDQ------MVQSLVRECRVLEDLSFF  216 (531)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~L~~~~~---~~~------~l~~~l~~~~~Le~L~L~  216 (531)
                      .++..+..+++|++|+|++|.+..  +    ..+..+++|++|+|++|.+   ++.      .+...+..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            344455555666666666665543  1    1234455666666655422   111      111123445555555555


Q ss_pred             ecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc-c-c----ceeeccCC---------CCccEEEE
Q 009616          217 YCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-V-P----RLLDVAEC---------PHLRKLVL  281 (531)
Q Consensus       217 ~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~----~~~~~~~~---------~~L~~L~L  281 (531)
                      +|.....- +               ..++.....+++|++|++++|. . .    .+..+..+         ++|+.|++
T Consensus       103 ~n~l~~~~-~---------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A          103 DNAFGPTA-Q---------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             SCCCCTTT-H---------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             CCcCCHHH-H---------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            54432100 0               0011122345667777776665 1 1    11122333         89999999


Q ss_pred             eCCCCChhhhh---hhhcCCCCCcEEEeccccchh----HHH----hcCcccceeccccccchhhhcccCCCcceeEeec
Q 009616          282 FLPHFNDQEFH---PLISKFPLLEDLSIISLETLE----RIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFED  350 (531)
Q Consensus       282 ~~~~~~~~~~~---~~l~~~~~L~~L~L~~c~~l~----~l~----~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~  350 (531)
                      ++|.+++..++   ..+..+++|+.|+|++|..-.    .+.    ..+++|+.|++.++. +....            .
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g------------~  233 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLG------------S  233 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHH------------H
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHH------------H
Confidence            99999865555   456688999999999985321    111    123444444444432 10000            0


Q ss_pred             CCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhh--ccccceeEEEeeeeeeee--eeccccccCCCCCCCcccce
Q 009616          351 NPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGA--FNQIGELHLSLNYKQVLF--NIDEFRSCHPSLPLQVESLS  426 (531)
Q Consensus       351 ~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~--l~~L~~L~L~~~~~~~~~--~ip~~~~~~~~~~~~~~L~~  426 (531)
                      ..+|..+..+++|+.|++++ +.+.......++..+..  +++|+.|+|+.|......  .+|..+.     ..+++|++
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-----~~l~~L~~  307 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLND-CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-----EKMPDLLF  307 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTT-CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-----HHCTTCCE
T ss_pred             HHHHHHHccCCCcCEEECCC-CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-----hcCCCceE
Confidence            11233445677888888875 55555444445555543  788888888876655410  0442221     23578888


Q ss_pred             EEEEEeee
Q 009616          427 LFMESFSL  434 (531)
Q Consensus       427 L~L~~~~~  434 (531)
                      |++..|..
T Consensus       308 L~l~~N~l  315 (386)
T 2ca6_A          308 LELNGNRF  315 (386)
T ss_dssp             EECTTSBS
T ss_pred             EEccCCcC
Confidence            88887743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.39  E-value=4.3e-13  Score=127.59  Aligned_cols=168  Identities=18%  Similarity=0.146  Sum_probs=126.9

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +.+++++..    .....+|..+.  ++|++|+|++|.+.+  +..+.++++|++|+|++|.+.+. .+..+..+++|++
T Consensus        15 ~~~~l~~~~----~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~   87 (251)
T 3m19_A           15 GKKEVDCQG----KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGT   87 (251)
T ss_dssp             GGTEEECTT----CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCeEEecCC----CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCE
Confidence            455666543    34567777655  689999999999987  55688899999999999988542 3344678999999


Q ss_pred             EEeeecCCccee--eccccccccEEEEEeec-ccccee-eeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~  286 (531)
                      |+|++|......  .+.++++|++|++++|. ..++.. ...+++|++|++++|. ...+ ..++.+++|+.|+|++|.+
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            999998764322  23467899999999987 333332 3468899999999998 3333 3588899999999999998


Q ss_pred             ChhhhhhhhcCCCCCcEEEecccc
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +. ..+..+..+++|+.|+|+++.
T Consensus       168 ~~-~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          168 QS-VPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             SC-CCTTTTTTCTTCCEEECCSCC
T ss_pred             Cc-cCHHHHhCCCCCCEEEeeCCc
Confidence            84 444567788999999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.39  E-value=5.7e-13  Score=125.70  Aligned_cols=169  Identities=10%  Similarity=0.002  Sum_probs=87.2

Q ss_pred             CCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCc-CCC--CcCCCCCCccCEEEeee-EEechHhHHHHHhCCcc
Q 009616          135 GVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCK-LEQ--PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRV  209 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~-~~~~~~~l~~~l~~~~~  209 (531)
                      ++++|+++.    .....+|. .+..+++|++|++++|. +..  +..+.++++|++|++++ |.+..- .+..+.++++
T Consensus        32 ~l~~L~l~~----n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIE----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPL  106 (239)
T ss_dssp             TCCEEEEES----CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTT
T ss_pred             cccEEEEeC----CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCC
Confidence            566666654    12233443 44456666666666665 544  23455666666666665 544221 1123455666


Q ss_pred             cceEEeeecCCcceeecccccccc---EEEEEee-c-ccccee-eeeCCccc-EEEecccc-ccceeeccCCCCccEEEE
Q 009616          210 LEDLSFFYCFGLKRLRISEAHKLK---SLILRFT-Y-QELESV-EIAVPSLQ-QLELSFSR-VPRLLDVAECPHLRKLVL  281 (531)
Q Consensus       210 Le~L~L~~c~~~~~l~~~~l~~L~---~L~l~~~-~-~~l~~~-~~~~~~L~-~L~l~~~~-~~~~~~~~~~~~L~~L~L  281 (531)
                      |++|++++|...+-..+..+++|+   .|++++| . ..++.- ...+++|+ +|++++|. ..++......++|+.|++
T Consensus       107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred             CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence            666666666543321233445555   6666666 3 222211 22456666 66666665 322222222256666666


Q ss_pred             eCCC-CChhhhhhhhcCC-CCCcEEEeccc
Q 009616          282 FLPH-FNDQEFHPLISKF-PLLEDLSIISL  309 (531)
Q Consensus       282 ~~~~-~~~~~~~~~l~~~-~~L~~L~L~~c  309 (531)
                      ++|. ++ ......+.++ ++|+.|+++++
T Consensus       187 ~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          187 NKNKYLT-VIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TTCTTCC-EECTTTTTTCSBCCSEEECTTC
T ss_pred             CCCCCcc-cCCHHHhhccccCCcEEECCCC
Confidence            6663 55 2233445555 66666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=2.5e-13  Score=131.10  Aligned_cols=170  Identities=21%  Similarity=0.173  Sum_probs=115.3

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.    .....++. .+..+++|++|++++|.+..  +..+.++++|++|+|++|.+... .+..+.++++|
T Consensus        28 ~~l~~L~ls~----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTT----CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTC
T ss_pred             CCccEEECCC----CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccc
Confidence            3688888764    22334444 66778889999999888876  34677888999999988877432 22346778889


Q ss_pred             ceEEeeecCCcce--eeccccccccEEEEEeec-cc--cceeeeeCCcccEEEecccc-c-cceeeccCCCCcc----EE
Q 009616          211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QE--LESVEIAVPSLQQLELSFSR-V-PRLLDVAECPHLR----KL  279 (531)
Q Consensus       211 e~L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~-~~--l~~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~----~L  279 (531)
                      ++|++++|.....  ..+.++++|+.|++++|. ..  ++.....+++|++|++++|. . ..+..+..+++|+    .|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            9999888865332  345677889999988886 22  33444567888999998887 2 2233455555555    78


Q ss_pred             EEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          280 VLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       280 ~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++++|.+++. ....+ ...+|+.|+|++|.
T Consensus       183 ~ls~n~l~~~-~~~~~-~~~~L~~L~L~~n~  211 (276)
T 2z62_A          183 DLSLNPMNFI-QPGAF-KEIRLKELALDTNQ  211 (276)
T ss_dssp             ECCSSCCCEE-CTTSS-CSCCEEEEECCSSC
T ss_pred             ecCCCccccc-Ccccc-CCCcccEEECCCCc
Confidence            8888887742 22222 34478888888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.38  E-value=6.2e-13  Score=129.32  Aligned_cols=166  Identities=20%  Similarity=0.111  Sum_probs=118.7

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +++++++..    .....+|..+.  +++++|+|++|.+.+  +..+.++++|++|+|++|.++.-  +. .+.+++|++
T Consensus        11 ~l~~l~~~~----~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~   81 (290)
T 1p9a_G           11 SHLEVNCDK----RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGT   81 (290)
T ss_dssp             TCCEEECTT----SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCE
T ss_pred             CccEEECCC----CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCE
Confidence            566666643    34456776654  688899999998877  55678889999999998887431  11 267889999


Q ss_pred             EEeeecCCcce-eeccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-cc-ceeeccCCCCccEEEEeCCCCC
Q 009616          213 LSFFYCFGLKR-LRISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       213 L~L~~c~~~~~-l~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      |++++|....- ..+.++++|+.|++++|. ..++ .....+++|++|++++|. .. .+..+..+++|+.|+|++|.++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99988865321 123467889999998886 3333 223467889999999888 33 3334678889999999988887


Q ss_pred             hhhhhhhhcCCCCCcEEEecccc
Q 009616          288 DQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       288 ~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                       ......+.++++|+.|+|+++.
T Consensus       162 -~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          162 -ELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSC
T ss_pred             -ccCHHHhcCcCCCCEEECCCCc
Confidence             3445566788899999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.36  E-value=2e-12  Score=125.74  Aligned_cols=165  Identities=24%  Similarity=0.234  Sum_probs=128.1

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      ..+++.|+++.    .....+| .+..+++|++|+|++|.+.+.+.+.++++|++|++++|.+++  ++. +..+++|++
T Consensus        45 l~~L~~L~l~~----~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTT----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred             cCcccEEEccC----CCcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCE
Confidence            35799998865    2233454 377889999999999999883338899999999999998854  333 788999999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |++++|.....-.+..+++|+.|++++|. ..+ .....+++|+.|++++|. ...+ .+..+++|+.|++++|.+++  
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~--  192 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--  192 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCC--
Confidence            99999976443345678999999999987 333 233468999999999998 3333 28899999999999999885  


Q ss_pred             hhhhhcCCCCCcEEEecccc
Q 009616          291 FHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++. +..+++|+.|+++++.
T Consensus       193 l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          193 LRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CGG-GTTCTTCSEEEEEEEE
T ss_pred             Chh-hccCCCCCEEECcCCc
Confidence            233 6789999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.34  E-value=3.7e-13  Score=135.34  Aligned_cols=158  Identities=15%  Similarity=0.096  Sum_probs=87.0

Q ss_pred             CCccccCCCCccEEEecCCcCCC-C-----cCCCCCC-ccCEEEeeeEEechH---hHHHHHhCC-cccceEEeeecCCc
Q 009616          153 LPQTIFSAKLLTSLKLFGCKLEQ-P-----SHCANLQ-SLKKLSLDEVYVNDQ---MVQSLVREC-RVLEDLSFFYCFGL  221 (531)
Q Consensus       153 lp~~l~~~~~L~~L~L~~~~l~~-~-----~~~~~l~-~L~~L~L~~~~~~~~---~l~~~l~~~-~~Le~L~L~~c~~~  221 (531)
                      +|..+...++|++|+|++|.+.+ +     ..+..++ +|++|+|++|.+++.   .+...+..+ ++|++|+|++|...
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            34444444568888888887765 2     3445677 788888888877433   233334443 78888888887643


Q ss_pred             ceee------cccc-ccccEEEEEeec-cccce--ee---ee-CCcccEEEecccc-c-----cceeeccCCC-CccEEE
Q 009616          222 KRLR------ISEA-HKLKSLILRFTY-QELES--VE---IA-VPSLQQLELSFSR-V-----PRLLDVAECP-HLRKLV  280 (531)
Q Consensus       222 ~~l~------~~~l-~~L~~L~l~~~~-~~l~~--~~---~~-~~~L~~L~l~~~~-~-----~~~~~~~~~~-~L~~L~  280 (531)
                      ....      +..+ ++|++|++++|. .....  +.   .. .++|++|++++|. .     ..+..+...+ +|+.|+
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN  173 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence            2211      2223 567777777765 11111  10   01 2467777776665 2     1111233343 667777


Q ss_pred             EeCCCCChhh---hhhhhcCC-CCCcEEEecccc
Q 009616          281 LFLPHFNDQE---FHPLISKF-PLLEDLSIISLE  310 (531)
Q Consensus       281 L~~~~~~~~~---~~~~l~~~-~~L~~L~L~~c~  310 (531)
                      |++|.+++..   +...+..+ ++|+.|+|++|.
T Consensus       174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            7666665422   22334444 366666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.33  E-value=2.5e-12  Score=125.11  Aligned_cols=146  Identities=16%  Similarity=0.155  Sum_probs=118.9

Q ss_pred             cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l  237 (531)
                      ..+++|++|++++|.+...+.+..+++|++|++++|.+++.  +. ++.+++|++|++++|.....-.+..+++|+.|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            45789999999999988755688899999999999998542  22 7899999999999997654444667899999999


Q ss_pred             Eeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++|. ..+. ....+++|++|++++|.......++.+++|+.|++++|.+++..  . +..+++|+.|++++|.
T Consensus       120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          120 EHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             CCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCc
Confidence            9997 3332 23468999999999998222257889999999999999998632  2 7889999999999974

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.32  E-value=2.8e-12  Score=117.14  Aligned_cols=146  Identities=17%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .++++|+++.  +  ....+| .+..+++|++|++++|.+..++.+..+++|++|++++|.+++..+. .++.+++|++|
T Consensus        44 ~~L~~L~l~~--n--~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLAN--I--NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEES--S--CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEE
T ss_pred             CCccEEeccC--C--CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEE
Confidence            3556666554  1  122344 3555556666666666444444455555566666655555332111 23445555555


Q ss_pred             EeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEF  291 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~  291 (531)
                      ++++|.....                    .......+++|++|++++|.  ...+ .+..+++|+.|++++|.+++-  
T Consensus       118 ~Ls~n~i~~~--------------------~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~--  174 (197)
T 4ezg_A          118 DISHSAHDDS--------------------ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY--  174 (197)
T ss_dssp             ECCSSBCBGG--------------------GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC--
T ss_pred             EecCCccCcH--------------------hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh--
Confidence            5555543221                    11111234555555555554  2222 456666677777766666641  


Q ss_pred             hhhhcCCCCCcEEEeccc
Q 009616          292 HPLISKFPLLEDLSIISL  309 (531)
Q Consensus       292 ~~~l~~~~~L~~L~L~~c  309 (531)
                      . .+..+++|+.|+++++
T Consensus       175 ~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          175 R-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             T-TGGGCSSCCEEEECBC
T ss_pred             H-HhccCCCCCEEEeeCc
Confidence            1 3556667777777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.32  E-value=1.2e-12  Score=128.58  Aligned_cols=151  Identities=19%  Similarity=0.046  Sum_probs=95.9

Q ss_pred             CCCCccEEEecCCcCCC--CcCC--CCCCccCEEEeeeEEechHh--HH-HHHhCCcccceEEeeecCCccee--ecccc
Q 009616          159 SAKLLTSLKLFGCKLEQ--PSHC--ANLQSLKKLSLDEVYVNDQM--VQ-SLVRECRVLEDLSFFYCFGLKRL--RISEA  229 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~~--l~-~~l~~~~~Le~L~L~~c~~~~~l--~~~~l  229 (531)
                      .+++|++|++++|.+.+  +..+  ..+++|++|+|++|.+++..  +. ..+..+++|++|+|++|...+..  .+.++
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            34679999999998876  5555  78999999999999885321  11 22457889999999888764332  23466


Q ss_pred             ccccEEEEEeec-cc---cce-e-eeeCCcccEEEecccc-cccee----eccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616          230 HKLKSLILRFTY-QE---LES-V-EIAVPSLQQLELSFSR-VPRLL----DVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (531)
Q Consensus       230 ~~L~~L~l~~~~-~~---l~~-~-~~~~~~L~~L~l~~~~-~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  298 (531)
                      ++|++|++++|. .+   +.. . ...+++|++|++++|. ...+.    .++.+++|+.|+|++|.+++..+ ..+..+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRC  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhc
Confidence            788888888775 11   111 1 1356677777777776 22121    13566777777777777664322 222333


Q ss_pred             ---CCCcEEEecccc
Q 009616          299 ---PLLEDLSIISLE  310 (531)
Q Consensus       299 ---~~L~~L~L~~c~  310 (531)
                         ++|++|+|++|.
T Consensus       248 ~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          248 MWSSALNSLNLSFAG  262 (310)
T ss_dssp             CCCTTCCCEECCSSC
T ss_pred             cCcCcCCEEECCCCC
Confidence               567777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=3.2e-12  Score=116.78  Aligned_cols=127  Identities=17%  Similarity=0.154  Sum_probs=88.2

Q ss_pred             cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l  237 (531)
                      ..+++|++|++++|.+...+++..+++|++|++++|.+..  ++ .++.+++|++|++++|....               
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~l~~---------------  102 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKDVTS---------------  102 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTTCBG---------------
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCccCc---------------
Confidence            4567888888888887763367777888888888775532  11 24556666666666654322               


Q ss_pred             EeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCC-CChhhhhhhhcCCCCCcEEEecccc
Q 009616          238 RFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPH-FNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       238 ~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                           ........+++|++|++++|.  ...+..++.+++|+.|++++|. ++.  ++ .+..+++|+.|++++|.
T Consensus       103 -----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          103 -----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             -----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC
T ss_pred             -----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC
Confidence                 011122246778888888877  3346678999999999999998 664  23 47889999999999975

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=3.2e-12  Score=136.67  Aligned_cols=166  Identities=22%  Similarity=0.206  Sum_probs=130.6

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      ..+++.|++..    .....+| .+..+++|+.|+|++|.+.+.+.+..+++|+.|+|++|.+.+  ++ .+..+++|+.
T Consensus        42 L~~L~~L~l~~----n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCBCTT----CCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCE
T ss_pred             CCCCCEEECcC----CCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCE
Confidence            35788888764    2234455 578899999999999999883348899999999999998854  23 3788999999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhh
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQE  290 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~  290 (531)
                      |+|++|.....-.+..+++|+.|++++|. ..+ .....+++|+.|++++|. ...+ .+..+++|+.|+|++|.+++- 
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~l-  190 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-  190 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC-
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch-hhccCCCCCEEECcCCCCCCC-
Confidence            99999986554446678999999999997 333 233478999999999998 3222 289999999999999999862 


Q ss_pred             hhhhhcCCCCCcEEEeccccc
Q 009616          291 FHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       291 ~~~~l~~~~~L~~L~L~~c~~  311 (531)
                        ..+..+++|+.|+|++|..
T Consensus       191 --~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          191 --RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             --GGGTTCTTCSEEECCSEEE
T ss_pred             --hHHccCCCCCEEEccCCcC
Confidence              3477899999999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=1e-12  Score=132.05  Aligned_cols=253  Identities=9%  Similarity=0.041  Sum_probs=153.3

Q ss_pred             EEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHh---HHHHHhCCc-ccceEEeeecCCccee--eccc-----ccc
Q 009616          165 SLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQM---VQSLVRECR-VLEDLSFFYCFGLKRL--RISE-----AHK  231 (531)
Q Consensus       165 ~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~---l~~~l~~~~-~Le~L~L~~c~~~~~l--~~~~-----l~~  231 (531)
                      .++++.+.+.+  |......++|++|+|++|.+++..   +...+..++ +|++|+|++|......  .+..     +++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788888887  444445566999999999985433   335577888 9999999999653321  1222     289


Q ss_pred             ccEEEEEeec-cccc-e-e---eeeC-CcccEEEecccc-ccce-ee----ccC-CCCccEEEEeCCCCChh---hhhhh
Q 009616          232 LKSLILRFTY-QELE-S-V---EIAV-PSLQQLELSFSR-VPRL-LD----VAE-CPHLRKLVLFLPHFNDQ---EFHPL  294 (531)
Q Consensus       232 L~~L~l~~~~-~~l~-~-~---~~~~-~~L~~L~l~~~~-~~~~-~~----~~~-~~~L~~L~L~~~~~~~~---~~~~~  294 (531)
                      |++|++++|. .... . +   .... ++|++|++++|. ...+ ..    +.. .++|+.|+|++|.+++.   .+...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999997 2111 1 1   1123 799999999998 2222 12    334 36899999999988853   33344


Q ss_pred             hcCCC-CCcEEEeccccchh-------HHHhcC-cccceeccccccchhhhcccCCCcceeEeecCCcCceecC-CCCCc
Q 009616          295 ISKFP-LLEDLSIISLETLE-------RIMISS-NRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTN-APCPL  364 (531)
Q Consensus       295 l~~~~-~L~~L~L~~c~~l~-------~l~~~~-~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~-~~~L~  364 (531)
                      +..++ +|+.|+|++|..-.       ...... .+|+.|+++++. +....            ...++..+.. .++|+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~------------~~~l~~~l~~~~~~L~  228 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKS------------YAELAYIFSSIPNHVV  228 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSC------------HHHHHHHHHHSCTTCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhH------------HHHHHHHHhcCCCCce
Confidence            55565 89999999885311       111122 355555555443 11100            0001222222 35788


Q ss_pred             EEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeee-eccccccCCCCCCCcccceEEEEEee
Q 009616          365 NVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFN-IDEFRSCHPSLPLQVESLSLFMESFS  433 (531)
Q Consensus       365 ~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~-ip~~~~~~~~~~~~~~L~~L~L~~~~  433 (531)
                      +|++++ +.+.......+...+..+++|+.|+++.|....... .-..+. . .++.+++|+.|+++.|.
T Consensus       229 ~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~-~-~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          229 SLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-A-AFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH-T-TSTTCCEEEEECTTSCB
T ss_pred             EEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH-H-HhccCCceEEEecCCCc
Confidence            888886 555555455556666788888888888765221100 000111 1 35567788888888773

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.25  E-value=9e-12  Score=119.28  Aligned_cols=146  Identities=14%  Similarity=0.097  Sum_probs=112.1

Q ss_pred             cccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616          156 TIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (531)
Q Consensus       156 ~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L  235 (531)
                      .+..+++|++|++++|.+...+.+..+++|++|+|++|.+++.  +. ++.+++|++|++++|...+...+.. ++|+.|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L  111 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL  111 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEE
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCcccc-CcccEE
Confidence            3556788999999999887744778899999999999988542  22 7889999999999887544222333 789999


Q ss_pred             EEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          236 ILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       236 ~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      ++++|. ..++. ...+++|+.|++++|. ...+ .++.+++|+.|++++|.+++.   ..+..+++|+.|+++++.
T Consensus       112 ~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          112 FLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             EccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            999887 33332 3368899999999998 3333 688899999999999998864   557788999999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.25  E-value=8.2e-12  Score=133.46  Aligned_cols=166  Identities=16%  Similarity=0.155  Sum_probs=129.1

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      +..+++|+.|++++|.+...+.+..+++|+.|+|++|.+.+.  +. +..+++|+.|+|++|.....-.+..+++|+.|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS  115 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence            345788999999999988856788999999999999998542  22 789999999999999765444566789999999


Q ss_pred             EEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc--hh
Q 009616          237 LRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LE  313 (531)
Q Consensus       237 l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~  313 (531)
                      +++|. ..++. ...+++|+.|++++|.......+..+++|+.|+|++|.+++.. +  +..+++|+.|+|++|..  +.
T Consensus       116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCBCG
T ss_pred             ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCCCCCCCh
Confidence            99997 33322 3478999999999998222257889999999999999998632 2  78899999999999853  22


Q ss_pred             HHHhcCcccceeccccc
Q 009616          314 RIMISSNRLMHLEVYNC  330 (531)
Q Consensus       314 ~l~~~~~~L~~L~l~~c  330 (531)
                      . ...+++|+.|++.++
T Consensus       192 ~-l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          192 A-LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             G-GTTCTTCSEEECCSE
T ss_pred             H-HccCCCCCEEEccCC
Confidence            1 122456666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.22  E-value=1.3e-11  Score=117.25  Aligned_cols=151  Identities=20%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             cCCcEEEEeeecCCCccccC-CccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNAL-PQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .+++.|+++.    .....+ |..+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.++. ..+..+..+++|
T Consensus        35 ~~l~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQS----TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTT----SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTC
T ss_pred             CCCCEEEccC----CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCC
Confidence            3788888875    222333 4467789999999999999988  4457899999999999999853 233456789999


Q ss_pred             ceEEeeecCCcceee--ccccccccEEEEEeec-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616          211 EDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       211 e~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      ++|+|++|.......  +.++++|+.|++++|. ..++. ....+++|++|++++|.  ...+..+..+++|+.|++++|
T Consensus       110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            999999996543222  4568999999999997 33333 23468999999999998  333346889999999999999


Q ss_pred             CCChh
Q 009616          285 HFNDQ  289 (531)
Q Consensus       285 ~~~~~  289 (531)
                      .++..
T Consensus       190 ~~~c~  194 (251)
T 3m19_A          190 QFDCS  194 (251)
T ss_dssp             CBCTT
T ss_pred             ceeCC
Confidence            98753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.19  E-value=7.2e-11  Score=124.89  Aligned_cols=133  Identities=16%  Similarity=0.055  Sum_probs=73.6

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .+++.|+++.  +  ....+|..++  ++|++|+|++|.+...+  ..+++|++|+|++|.+++  ++. +..  +|++|
T Consensus        59 ~~L~~L~Ls~--n--~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L  125 (571)
T 3cvr_A           59 NQFSELQLNR--L--NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHL  125 (571)
T ss_dssp             TTCSEEECCS--S--CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred             CCccEEEeCC--C--CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence            4788887765  2  2334676553  67888888888777622  457778888888777643  333 222  77777


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCC
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      +|++|...+ ++. .+++|+.|++++|. ..++.   .+++|++|++++|. ..+|. +.  ++|+.|+|++|.++
T Consensus       126 ~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          126 DVDNNQLTM-LPE-LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             ECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred             ECCCCcCCC-CCC-cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence            777765433 222 34556666665554 22222   34455555555554 22222 22  44555555554444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.18  E-value=2e-11  Score=112.37  Aligned_cols=138  Identities=16%  Similarity=0.123  Sum_probs=83.1

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI  226 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~  226 (531)
                      ....+|..+  .++|++|++++|.+.+ + ..+.++++|++|++++|.+.. .....+..+++|++|++++|....... 
T Consensus        18 ~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-   93 (208)
T 2o6s_A           18 GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPN-   93 (208)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCH-
Confidence            345566554  3578899999988877 3 345778888888888887742 122335667778888777775422111 


Q ss_pred             cccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       227 ~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                                         .....+++|++|++++|. ... +..+..+++|+.|++++|.+++ .....+..+++|+.|
T Consensus        94 -------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           94 -------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYI  153 (208)
T ss_dssp             -------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred             -------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEE
Confidence                               011134455555555554 212 2235666777777777776663 334445667777777


Q ss_pred             Eecccc
Q 009616          305 SIISLE  310 (531)
Q Consensus       305 ~L~~c~  310 (531)
                      +++++.
T Consensus       154 ~l~~N~  159 (208)
T 2o6s_A          154 WLHDNP  159 (208)
T ss_dssp             ECCSCC
T ss_pred             EecCCC
Confidence            777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.17  E-value=1.5e-11  Score=113.15  Aligned_cols=103  Identities=24%  Similarity=0.241  Sum_probs=73.3

Q ss_pred             cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.  +  ....+|.. +..+++|++|++++|.+.+ + ..+.++++|++|+|++|.+.. .....+..+++|
T Consensus        28 ~~l~~L~l~~--n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLET--N--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCS--S--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCC--C--ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCC
Confidence            4799999976  2  23355554 5688999999999999988 4 346789999999999998853 223346789999


Q ss_pred             ceEEeeecCCcceee--ccccccccEEEEEeec
Q 009616          211 EDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY  241 (531)
Q Consensus       211 e~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~  241 (531)
                      ++|++++|...+...  +.++++|+.|++++|.
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            999999886532211  2345566666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.16  E-value=3.2e-11  Score=112.12  Aligned_cols=136  Identities=14%  Similarity=0.127  Sum_probs=77.0

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC-Cc--CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecc
Q 009616          151 NALPQTIFSAKLLTSLKLFGCKLEQ-PS--HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS  227 (531)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~  227 (531)
                      ..+|..+.  ..+++|+|++|.+.+ ++  .+.++++|++|+|++|.++.- .+..+.++++|++|+|++|...+.    
T Consensus        24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~----   96 (220)
T 2v70_A           24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENV----   96 (220)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCC----
T ss_pred             ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCcc----
Confidence            34555432  345666666666655 21  245566666666666655321 112244555555555555543211    


Q ss_pred             ccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616          228 EAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS  305 (531)
Q Consensus       228 ~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~  305 (531)
                                      .+.....+++|++|++++|.  ...+..+..+++|+.|+|++|.+++ ..+..+..+++|+.|+
T Consensus        97 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           97 ----------------QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             ----------------CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEE
T ss_pred             ----------------CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEE
Confidence                            11112245667777777766  3334567777888888888887774 3345566778888888


Q ss_pred             ecccc
Q 009616          306 IISLE  310 (531)
Q Consensus       306 L~~c~  310 (531)
                      |+++.
T Consensus       160 L~~N~  164 (220)
T 2v70_A          160 LLANP  164 (220)
T ss_dssp             CCSCC
T ss_pred             ecCcC
Confidence            87754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.15  E-value=9.6e-11  Score=123.96  Aligned_cols=155  Identities=16%  Similarity=0.053  Sum_probs=111.1

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++.|+|+.  +  ....+|   ..+++|++|+|++|.+.+ |. +.+  +|++|+|++|.+++  ++.   .+++|+.
T Consensus        80 ~~L~~L~Ls~--N--~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~  144 (571)
T 3cvr_A           80 PQITVLEITQ--N--ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEY  144 (571)
T ss_dssp             TTCSEEECCS--S--CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCE
T ss_pred             CCCCEEECcC--C--CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC--CCC---cCccccE
Confidence            5789998875  2  234677   346889999999998887 44 443  89999999988854  343   6889999


Q ss_pred             EEeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCc-------cEEEEeC
Q 009616          213 LSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHL-------RKLVLFL  283 (531)
Q Consensus       213 L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L-------~~L~L~~  283 (531)
                      |+|++|...+ ++. .+++|+.|++++|. ..++.  +. ++|+.|++++|. ..+|. +..  +|       +.|+|++
T Consensus       145 L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          145 INADNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             EECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCS
T ss_pred             EeCCCCccCc-CCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCC
Confidence            9998887543 333 46789999999887 44554  22 889999999988 44444 443  67       9999999


Q ss_pred             CCCChhhhhhhhcCCCCCcEEEeccccchh
Q 009616          284 PHFNDQEFHPLISKFPLLEDLSIISLETLE  313 (531)
Q Consensus       284 ~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~  313 (531)
                      |.++.  ++..+.++++|+.|+|++|....
T Consensus       217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          217 NRITH--IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             Cccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence            98883  44445568899999999876533

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=7.4e-11  Score=117.88  Aligned_cols=158  Identities=14%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC-Cc-CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee-
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR-  225 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~-  225 (531)
                      ....+|..+.  +++++|+|++|++.. ++ .+.++++|++|+|++|.+.+..-...+.++++|+++.+.++..+..+. 
T Consensus        20 ~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           20 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            3445665552  567777777777766 43 456777777777777765221111234566666665555544444443 


Q ss_pred             --ccccccccEEEEEeec-ccccee-eeeCCcccEEEecccc--ccce-eeccCCC-CccEEEEeCCCCChhhhhhhhcC
Q 009616          226 --ISEAHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR--VPRL-LDVAECP-HLRKLVLFLPHFNDQEFHPLISK  297 (531)
Q Consensus       226 --~~~l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~--~~~~-~~~~~~~-~L~~L~L~~~~~~~~~~~~~l~~  297 (531)
                        +.++++|+.|++++|. ..++.. .....++..|++.++.  ...+ ..+..++ .++.|++++|.++.  ++.....
T Consensus        98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~  175 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFN  175 (350)
T ss_dssp             TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSST
T ss_pred             hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhcc
Confidence              3356677777777775 222221 2244455666665543  1111 1233333 46666666666652  2222223


Q ss_pred             CCCCcEEEecccc
Q 009616          298 FPLLEDLSIISLE  310 (531)
Q Consensus       298 ~~~L~~L~L~~c~  310 (531)
                      .++|+.|.+.++.
T Consensus       176 ~~~L~~l~l~~~n  188 (350)
T 4ay9_X          176 GTQLDELNLSDNN  188 (350)
T ss_dssp             TEEEEEEECTTCT
T ss_pred             ccchhHHhhccCC
Confidence            3455666655543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=6.8e-11  Score=118.14  Aligned_cols=210  Identities=10%  Similarity=0.013  Sum_probs=140.3

Q ss_pred             cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC--C-cCCCCCCccCEE-EeeeEEechHhHHHHHhCCc
Q 009616          134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ--P-SHCANLQSLKKL-SLDEVYVNDQMVQSLVRECR  208 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~-~~~~~l~~L~~L-~L~~~~~~~~~l~~~l~~~~  208 (531)
                      +++++|+|+.    .....+|.. +.++++|++|+|++|.+.+  + ..+.++++|+++ .+..|.+.. ..+..+..++
T Consensus        30 ~~l~~L~Ls~----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVL----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEES----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccC----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            5799999986    345578764 6789999999999998765  3 356788888764 455555532 1234467899


Q ss_pred             ccceEEeeecCCcceee--ccccccccEEEEEeeccccceee----ee-CCcccEEEecccc-ccceeeccCCCCccEEE
Q 009616          209 VLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTYQELESVE----IA-VPSLQQLELSFSR-VPRLLDVAECPHLRKLV  280 (531)
Q Consensus       209 ~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~~~l~~~~----~~-~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~  280 (531)
                      +|++|++++|.......  ..+..++..|++.++. .+..+.    .. ...++.|++++|. ..++......++|+.|+
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN  183 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence            99999999997643322  2234677788887665 232222    12 3468999999998 55555555667899999


Q ss_pred             EeC-CCCChhhhhhhhcCCCCCcEEEeccccchhHHHh-cCcccceeccccccchhhhcccCCCcceeEeecCCcCceec
Q 009616          281 LFL-PHFNDQEFHPLISKFPLLEDLSIISLETLERIMI-SSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVST  358 (531)
Q Consensus       281 L~~-~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~  358 (531)
                      +.+ +.++ ......+.++++|+.|+|+++. ++.+.. .+.+|+.|.+.++.+++.+                 | .+.
T Consensus       184 l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~l-----------------P-~l~  243 (350)
T 4ay9_X          184 LSDNNNLE-ELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKL-----------------P-TLE  243 (350)
T ss_dssp             CTTCTTCC-CCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCC-----------------C-CTT
T ss_pred             hccCCccc-CCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcC-----------------C-Cch
Confidence            975 4454 4555677899999999999874 322221 2345555555544443322                 2 234


Q ss_pred             CCCCCcEEEEE
Q 009616          359 NAPCPLNVLFS  369 (531)
Q Consensus       359 ~~~~L~~L~l~  369 (531)
                      ++++|+.+++.
T Consensus       244 ~l~~L~~l~l~  254 (350)
T 4ay9_X          244 KLVALMEASLT  254 (350)
T ss_dssp             TCCSCCEEECS
T ss_pred             hCcChhhCcCC
Confidence            57888998886

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=2.6e-11  Score=107.53  Aligned_cols=127  Identities=21%  Similarity=0.162  Sum_probs=77.6

Q ss_pred             CCccEEEecCCcCC--C-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616          161 KLLTSLKLFGCKLE--Q-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (531)
Q Consensus       161 ~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l  237 (531)
                      ++|++|++++|.+.  . |..+..+++|++|++++|.+...   ..+..+++|++|++++|...+.              
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG--------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence            66777777777776  2 44456677777777777665331   2244455555555555443221              


Q ss_pred             EeeccccceeeeeCCcccEEEecccc-ccce--eeccCCCCccEEEEeCCCCChhhh--hhhhcCCCCCcEEEecccc
Q 009616          238 RFTYQELESVEIAVPSLQQLELSFSR-VPRL--LDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       238 ~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~~~~L~~L~L~~c~  310 (531)
                            ++.....+++|++|++++|. ...+  ..+..+++|+.|++++|.+++...  ...+..+++|+.|++++|.
T Consensus        87 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           87 ------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                  22222246677777777776 2222  467788888888888888774321  1467778888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.12  E-value=3.5e-11  Score=129.83  Aligned_cols=268  Identities=16%  Similarity=0.081  Sum_probs=176.7

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .+++.+.+...    ....++ .+..+.+|+.|++.+|.+... ....++.|+.+++..+..... ..  ...++.|+.|
T Consensus       306 ~~l~~l~~~~~----~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~-~~--~~~l~~L~~L  376 (635)
T 4g8a_A          306 TNVSSFSLVSV----TIERVK-DFSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNA-FS--EVDLPSLEFL  376 (635)
T ss_dssp             TTCSEEEEESC----EEEECG-GGGSCCCCSEEEEESCEESSC-CCCBCTTCCEEEEESCCSCCB-CC--CCBCTTCCEE
T ss_pred             ccccccccccc----cccccc-ccccchhhhhhhcccccccCc-CcccchhhhhcccccccCCCC-cc--cccccccccc
Confidence            46777776541    112222 244567899999999988761 224578899999988866321 11  3468999999


Q ss_pred             EeeecCCcceee----ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc---ccceeeccCCCCccEEEEeCCC
Q 009616          214 SFFYCFGLKRLR----ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLRKLVLFLPH  285 (531)
Q Consensus       214 ~L~~c~~~~~l~----~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~L~~~~  285 (531)
                      ++++|.......    ...+.+|+.|++..+. .........+++|+.+++.++.   ......+..+++++.++++.+.
T Consensus       377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~  456 (635)
T 4g8a_A          377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  456 (635)
T ss_dssp             ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred             hhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            999887643221    2246789999988776 2333334478899999998887   3334467889999999999998


Q ss_pred             CChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcE
Q 009616          286 FNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN  365 (531)
Q Consensus       286 ~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~  365 (531)
                      ++. ..+..+..++.|+.|+|++|.....+...       .+..+++|+.++++.++++.+      .|..+.++++|++
T Consensus       457 l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-------~~~~l~~L~~L~Ls~N~L~~l------~~~~f~~l~~L~~  522 (635)
T 4g8a_A          457 TRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQV  522 (635)
T ss_dssp             CEE-CCTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCE
T ss_pred             ccc-ccccccccchhhhhhhhhhcccccccCch-------hhhhccccCEEECCCCccCCc------ChHHHcCCCCCCE
Confidence            874 34556778899999999987644322110       122334455555555554322      2456778899999


Q ss_pred             EEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCC-cccceEEEEEeeeccC
Q 009616          366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQ-VESLSLFMESFSLYMD  437 (531)
Q Consensus       366 L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~-~~L~~L~L~~~~~~~~  437 (531)
                      |+|++ +.+....    +..+.++++|+.|+|+.|.....  .|.      .+..+ .+|++|+|+.|...-+
T Consensus       523 L~Ls~-N~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~--~~~------~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          523 LNMSH-NNFFSLD----TFPYKCLNSLQVLDYSLNHIMTS--KKQ------ELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTT-SCCCBCC----CGGGTTCTTCCEEECTTSCCCBC--CSS------CTTCCCTTCCEEECTTCCBCCS
T ss_pred             EECCC-CcCCCCC----hhHHhCCCCCCEEECCCCcCCCC--CHH------HHHhhhCcCCEEEeeCCCCccc
Confidence            99985 4444322    23467889999999987776554  342      33444 6899999998754444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.12  E-value=7.9e-11  Score=110.19  Aligned_cols=138  Identities=16%  Similarity=0.108  Sum_probs=86.0

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI  226 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~  226 (531)
                      ....+|..+.  ++|++|+|++|.+.+  +..+.++++|++|+|++|.+.. .....+..+++|+.|+|++|.... +..
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~-l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV-LPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCc-cCh
Confidence            4456666543  778888888888777  4556778888888888877732 112334567777777777664322 111


Q ss_pred             cccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616          227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS  305 (531)
Q Consensus       227 ~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~  305 (531)
                                         .....+++|++|++++|. ..+|..+..+++|+.|+|++|.++. .....+..+++|+.|+
T Consensus       106 -------------------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A          106 -------------------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             -------------------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             -------------------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEE
Confidence                               111234555566666555 4445556777777777777777763 3335566777888888


Q ss_pred             ecccc
Q 009616          306 IISLE  310 (531)
Q Consensus       306 L~~c~  310 (531)
                      |.+++
T Consensus       166 l~~N~  170 (229)
T 3e6j_A          166 LFGNP  170 (229)
T ss_dssp             CTTSC
T ss_pred             eeCCC
Confidence            87754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.10  E-value=1.1e-10  Score=109.15  Aligned_cols=123  Identities=14%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec
Q 009616          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY  241 (531)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~  241 (531)
                      -+.++.+++.+.. |..+  .++|++|+|++|.+... .+..+..+++|++|+|++|.. ..+..               
T Consensus        21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~---------------   81 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPV---------------   81 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCT---------------
T ss_pred             CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcCh---------------
Confidence            5678888888876 5443  48999999999988542 234467788888888887764 22211               


Q ss_pred             cccceeeeeCCcccEEEecccc-cc-ceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          242 QELESVEIAVPSLQQLELSFSR-VP-RLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       242 ~~l~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                          .....+++|++|++++|. .. .+..+..+++|+.|+|++|.++.  ++..+.++++|+.|+|+++.
T Consensus        82 ----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           82 ----GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             ----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC
T ss_pred             ----hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc
Confidence                111235666666676666 22 23347889999999999999983  45556889999999999974

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=2e-11  Score=116.88  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=114.9

Q ss_pred             CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEE
Q 009616          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~  238 (531)
                      .+.+++.++++++.+.....+..+++|++|++++|.+..  ++ .+..+++|++|++++|...+...+.++++|+.|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence            346677788888888773457789999999999998843  33 378899999999999976544447788999999999


Q ss_pred             eec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       239 ~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +|. ..++.+..  ++|+.|++++|.......++.+++|+.|++++|.+++-  + .+..+++|+.|++++|.
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc
Confidence            997 44444433  89999999999922223689999999999999999863  2 47789999999999975

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=1.9e-11  Score=106.14  Aligned_cols=125  Identities=18%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             CCCccEEEecCCcCC-C--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          160 AKLLTSLKLFGCKLE-Q--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       160 ~~~L~~L~L~~~~l~-~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      .++|++|++++|.+. +  |..+..+++|++|++++|.+.+.   ..++.+++|++|++++|...+.             
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-------------   79 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-------------   79 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------------
Confidence            367888888888887 3  56667788888888888876432   3345566666666666543221             


Q ss_pred             EEeeccccceeeeeCCcccEEEecccc-cc--ceeeccCCCCccEEEEeCCCCChhhh--hhhhcCCCCCcEEEec
Q 009616          237 LRFTYQELESVEIAVPSLQQLELSFSR-VP--RLLDVAECPHLRKLVLFLPHFNDQEF--HPLISKFPLLEDLSII  307 (531)
Q Consensus       237 l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~~~~L~~L~L~  307 (531)
                             ++.....+++|++|++++|. ..  .+..++.+++|+.|++++|.+++...  ...+..+++|+.|+++
T Consensus        80 -------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 -------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                   22222245666777776666 22  22567778888888888887765321  1456777888887765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.07  E-value=1.5e-10  Score=107.56  Aligned_cols=138  Identities=15%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI  226 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~  226 (531)
                      ....+|..+.  ++|++|+|++|.+..  +..+..+++|++|+|++|.+... .+..+.++++|++|+|++|.... +..
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~-l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITE-LPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCC-CCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCc-cCH
Confidence            4456666554  578888888887776  33567778888888887776431 23335666777777776665321 111


Q ss_pred             cccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          227 SEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       227 ~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                                         .....+++|++|++++|.  ...+..+..+++|+.|+|++|.++. .....+..+++|+.|
T Consensus        98 -------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           98 -------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTM  157 (220)
T ss_dssp             -------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred             -------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEE
Confidence                               111234566666666665  2234457777888888888887774 334456677888888


Q ss_pred             Eecccc
Q 009616          305 SIISLE  310 (531)
Q Consensus       305 ~L~~c~  310 (531)
                      +|+++.
T Consensus       158 ~L~~N~  163 (220)
T 2v9t_B          158 HLAQNP  163 (220)
T ss_dssp             ECCSSC
T ss_pred             EeCCCC
Confidence            887754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.06  E-value=1.3e-10  Score=108.05  Aligned_cols=129  Identities=17%  Similarity=0.130  Sum_probs=89.3

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.    .....+|. .+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.++. ..+..+.++++|
T Consensus        32 ~~l~~L~l~~----n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQ----NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCS----SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             cCCCEEECCC----CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence            5799999875    23345554 56778999999999999987  6778999999999999998853 223345778889


Q ss_pred             ceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCC
Q 009616          211 EDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       211 e~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      ++|+|++|.......                    .....+++|++|++++|.  ...+..+..+++|+.|+|++|.++
T Consensus       107 ~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          107 QLLLLNANKINCLRV--------------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCCCCCCT--------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCCCEeCH--------------------HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999988886432111                    111134555555555555  222234677788888888887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=107.08  Aligned_cols=130  Identities=13%  Similarity=0.065  Sum_probs=91.6

Q ss_pred             cCCcEEEEeeecCCCccccC-C-ccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcc
Q 009616          134 NGVKELDFEVITDKNSVNAL-P-QTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRV  209 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~l-p-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~  209 (531)
                      ..+++|+++.  +  ....+ | ..+..+++|++|+|++|.+.+  +..+.++++|++|+|++|.+... .+..+..+++
T Consensus        32 ~~~~~L~L~~--N--~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  106 (220)
T 2v70_A           32 QYTAELRLNN--N--EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLES  106 (220)
T ss_dssp             TTCSEEECCS--S--CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSS
T ss_pred             CCCCEEEcCC--C--cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcC
Confidence            4678888875  2  23344 3 346789999999999999988  44788999999999999998432 3344678899


Q ss_pred             cceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCC
Q 009616          210 LEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       210 Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~  287 (531)
                      |++|+|++|...+..+                    .....+++|++|++++|.  ...+..+..+++|+.|++++|.++
T Consensus       107 L~~L~Ls~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          107 LKTLMLRSNRITCVGN--------------------DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCEEECTTSCCCCBCT--------------------TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCEEECCCCcCCeECH--------------------hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999998886432211                    111234566666666666  333556788888888888888876


Q ss_pred             h
Q 009616          288 D  288 (531)
Q Consensus       288 ~  288 (531)
                      .
T Consensus       167 c  167 (220)
T 2v70_A          167 C  167 (220)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=1.4e-10  Score=116.39  Aligned_cols=159  Identities=18%  Similarity=0.100  Sum_probs=110.1

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC-C-cCCC-CCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCA-NLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL  224 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~-~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l  224 (531)
                      .....+|..+.  +.++.|+|++|.+.+ + ..+. ++++|++|+|++|.+..- .+..+.++++|++|+|++|......
T Consensus        28 ~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~  104 (361)
T 2xot_A           28 QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLD  104 (361)
T ss_dssp             SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCC
Confidence            34556776554  468999999999887 3 3454 899999999999988432 2234678999999999998753322


Q ss_pred             --eccccccccEEEEEeec-ccc-ceeeeeCCcccEEEecccc-ccceee-c---cCCCCccEEEEeCCCCChhhhhhhh
Q 009616          225 --RISEAHKLKSLILRFTY-QEL-ESVEIAVPSLQQLELSFSR-VPRLLD-V---AECPHLRKLVLFLPHFNDQEFHPLI  295 (531)
Q Consensus       225 --~~~~l~~L~~L~l~~~~-~~l-~~~~~~~~~L~~L~l~~~~-~~~~~~-~---~~~~~L~~L~L~~~~~~~~~~~~~l  295 (531)
                        .+.++++|+.|++++|. ..+ +.....+++|+.|++++|. ...+.. +   ..+++|+.|+|++|.++. .....+
T Consensus       105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~  183 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL  183 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHH
T ss_pred             HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHh
Confidence              24567899999999886 222 2223467889999999888 444433 3   568899999999888874 333445


Q ss_pred             cCCCC--CcEEEecccc
Q 009616          296 SKFPL--LEDLSIISLE  310 (531)
Q Consensus       296 ~~~~~--L~~L~L~~c~  310 (531)
                      ..++.  |+.|+|.+++
T Consensus       184 ~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          184 QKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHSCHHHHTTEECCSSC
T ss_pred             hhccHhhcceEEecCCC
Confidence            56665  4778888753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.04  E-value=2.1e-10  Score=101.58  Aligned_cols=105  Identities=23%  Similarity=0.100  Sum_probs=78.3

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      +++++|+++.  +......+|..+..+++|++|++++|.+.+...+..+++|++|++++|.+... ++..+.++++|++|
T Consensus        24 ~~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            4799999876  22222378888889999999999999988766778899999999999998543 56677789999999


Q ss_pred             EeeecCCcce---eeccccccccEEEEEeec
Q 009616          214 SFFYCFGLKR---LRISEAHKLKSLILRFTY  241 (531)
Q Consensus       214 ~L~~c~~~~~---l~~~~l~~L~~L~l~~~~  241 (531)
                      ++++|.....   ..+..+++|+.|++++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            9999865331   123344555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.00  E-value=2.5e-10  Score=99.00  Aligned_cols=105  Identities=23%  Similarity=0.180  Sum_probs=79.2

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .++++|+++.  +......+|..+..+++|++|++++|.+.+...++++++|++|++++|.+.+. ++..+..+++|++|
T Consensus        17 ~~l~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTT--CBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEEccC--CcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            4789998875  22222378888889999999999999988766778899999999999998543 67777889999999


Q ss_pred             EeeecCCcce---eeccccccccEEEEEeec
Q 009616          214 SFFYCFGLKR---LRISEAHKLKSLILRFTY  241 (531)
Q Consensus       214 ~L~~c~~~~~---l~~~~l~~L~~L~l~~~~  241 (531)
                      ++++|...+.   ..+.++++|+.|++++|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999875331   223345556666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.99  E-value=5.7e-12  Score=133.84  Aligned_cols=149  Identities=14%  Similarity=0.091  Sum_probs=79.6

Q ss_pred             cCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEe------------chHhHHHHHhCCcccceEE-eeecCC--c
Q 009616          158 FSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYV------------NDQMVQSLVRECRVLEDLS-FFYCFG--L  221 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~------------~~~~l~~~l~~~~~Le~L~-L~~c~~--~  221 (531)
                      ..++.|+.|+|++|.+.. |..++++++|+.|+++++..            ....++..++.+++|+.|+ ++.+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            456777777777777665 66677777777777655431            0112344455566666665 332211  0


Q ss_pred             cee-----eccc--cccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhh
Q 009616          222 KRL-----RISE--AHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (531)
Q Consensus       222 ~~l-----~~~~--l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (531)
                      ..+     .+..  ...|+.|++++|. ..++. ...+++|+.|++++|. ..+|..++.+++|+.|+|++|.+++  ++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            000     0110  1245666666655 33333 3345566666666665 4445556666666666666666653  23


Q ss_pred             hhhcCCCCCcEEEecccc
Q 009616          293 PLISKFPLLEDLSIISLE  310 (531)
Q Consensus       293 ~~l~~~~~L~~L~L~~c~  310 (531)
                       .+.++++|+.|+|++|.
T Consensus       503 -~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             -GGTTCSSCCEEECCSSC
T ss_pred             -ccCCCCCCcEEECCCCC
Confidence             35556666666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.96  E-value=4.3e-11  Score=109.28  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=85.6

Q ss_pred             cccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeecccc
Q 009616          150 VNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEA  229 (531)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l  229 (531)
                      ...+|..+..+++|++|++++|.+.+.+.+.++++|++|++++|.+..  ++..+..+++|++|++++|...+...+.++
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            445555777888899999988888773377778888888888888752  455556677888888887754332123344


Q ss_pred             ccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhh---------hhhhhcCCC
Q 009616          230 HKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQE---------FHPLISKFP  299 (531)
Q Consensus       230 ~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~---------~~~~l~~~~  299 (531)
                      ++|+.|++++|. ..++.                    ...+..+++|+.|++++|.+++..         ....+..++
T Consensus       115 ~~L~~L~l~~N~i~~~~~--------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~  174 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGE--------------------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             HHSSEEEESEEECCCHHH--------------------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred             CCCCEEECCCCcCCchhH--------------------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence            555555555553 11111                    124566677777777777665431         223466788


Q ss_pred             CCcEEE
Q 009616          300 LLEDLS  305 (531)
Q Consensus       300 ~L~~L~  305 (531)
                      +|+.|+
T Consensus       175 ~L~~Ld  180 (198)
T 1ds9_A          175 NLKKLD  180 (198)
T ss_dssp             SCSEEC
T ss_pred             CcEEEC
Confidence            888876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=2.6e-10  Score=101.92  Aligned_cols=131  Identities=18%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             ccCCCCccEEEecCCcCCCCcCCCCC-CccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQPSHCANL-QSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L  235 (531)
                      +..+.+|++|++++|.+...+.+..+ ++|++|++++|.+++  + ..++.+++|++|++++|... .++          
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~-~~~----------   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRIC-RIG----------   80 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCC-EEC----------
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCccc-ccC----------
Confidence            45678888999998887763334443 488888888877643  1 23455666666666665432 111          


Q ss_pred             EEEeeccccceeeeeCCcccEEEecccc-cccee--eccCCCCccEEEEeCCCCChhhhh---hhhcCCCCCcEEEeccc
Q 009616          236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRLL--DVAECPHLRKLVLFLPHFNDQEFH---PLISKFPLLEDLSIISL  309 (531)
Q Consensus       236 ~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~---~~l~~~~~L~~L~L~~c  309 (531)
                               +.+...+++|++|++++|. ...+.  .+..+++|+.|++++|.++.. ..   ..+..+++|+.|+++.+
T Consensus        81 ---------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           81 ---------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ---------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred             ---------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence                     0111245666666666666 33333  577788888888888887632 11   24778889999998887


Q ss_pred             cc
Q 009616          310 ET  311 (531)
Q Consensus       310 ~~  311 (531)
                      ..
T Consensus       151 ~~  152 (176)
T 1a9n_A          151 KL  152 (176)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=4.1e-10  Score=100.65  Aligned_cols=129  Identities=13%  Similarity=0.065  Sum_probs=79.8

Q ss_pred             CCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEE
Q 009616          179 CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLE  258 (531)
Q Consensus       179 ~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~  258 (531)
                      +.++++|++|++++|.++.  ++.+...+++|++|++++|...                     .+ .....+++|++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~---------------------~~-~~l~~l~~L~~L~   70 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR---------------------KL-DGFPLLRRLKTLL   70 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC---------------------EE-CCCCCCSSCCEEE
T ss_pred             cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCC---------------------cc-cccccCCCCCEEE
Confidence            3446666666666665532  2222222335555555554321                     11 1122467788888


Q ss_pred             ecccc-ccceee-ccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc--hhH----HHhcCcccceeccccc
Q 009616          259 LSFSR-VPRLLD-VAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LER----IMISSNRLMHLEVYNC  330 (531)
Q Consensus       259 l~~~~-~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~~----l~~~~~~L~~L~l~~c  330 (531)
                      +++|. ...+.. ++.+++|+.|++++|.++.-.....+..+++|+.|++++|..  +..    +...+++|+.|++..+
T Consensus        71 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            88887 333333 588999999999999997522123577899999999999864  111    2334677888887765


Q ss_pred             c
Q 009616          331 S  331 (531)
Q Consensus       331 ~  331 (531)
                      .
T Consensus       151 ~  151 (176)
T 1a9n_A          151 K  151 (176)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.84  E-value=1.5e-09  Score=75.77  Aligned_cols=39  Identities=15%  Similarity=0.324  Sum_probs=33.6

Q ss_pred             CCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhh
Q 009616            6 DADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQ   44 (531)
Q Consensus         6 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw   44 (531)
                      ..+.++.||+||+.+||++|+.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            456799999999999999999999999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.81  E-value=3.5e-09  Score=106.11  Aligned_cols=144  Identities=18%  Similarity=0.058  Sum_probs=104.5

Q ss_pred             ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHh-CCcccceEEeeecCCccee--eccccccccEEEEE
Q 009616          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVR-ECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILR  238 (531)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~-~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~  238 (531)
                      -++++++++.+.. |..+  .+.++.|+|++|.++.- ....+. ++++|++|+|++|......  .+.++++|+.|+++
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3689999998887 5443  45699999999988542 222344 8999999999998753322  25578999999999


Q ss_pred             eec-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhh---cCCCCCcEEEecccc
Q 009616          239 FTY-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLI---SKFPLLEDLSIISLE  310 (531)
Q Consensus       239 ~~~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~L~~L~L~~c~  310 (531)
                      +|. ..+.. ....+++|+.|++++|.  ...+..+..+++|+.|+|++|.++. .....+   .++++|+.|+|+++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence            986 22222 23467899999999998  3335568889999999999999885 233334   568899999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.79  E-value=4.3e-09  Score=95.42  Aligned_cols=66  Identities=20%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC-Cc--CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecC
Q 009616          151 NALPQTIFSAKLLTSLKLFGCKLEQ-PS--HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (531)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~  219 (531)
                      ..+|..+..  +|++|++++|.+.+ ++  .++++++|++|+|++|.+++. .+..+.++++|++|+|++|.
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence            445554432  56666666666655 22  245566666666666655321 12234445555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.78  E-value=5.5e-10  Score=112.26  Aligned_cols=60  Identities=18%  Similarity=0.129  Sum_probs=34.0

Q ss_pred             CCcccEEEecccc-cc-----ceeeccCCCCccEEEEeCCCCChhh---hhhhhcCCCCCcEEEecccc
Q 009616          251 VPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLFLPHFNDQE---FHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L~~~~~~~~~---~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +++|++|++++|. +.     ....+...++|+.|+|++|.+++..   +...+..+++|+.|+|++|.
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            4556666666665 11     1223455566777777777776532   23334455677777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.74  E-value=1.1e-09  Score=99.78  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEE
Q 009616          178 HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQL  257 (531)
Q Consensus       178 ~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L  257 (531)
                      .+..+++|++|++++|.+..  ++ .+..+++|++|++++|..                     ..++.....+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l---------------------~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI---------------------KKIENLDAVADTLEEL   98 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE---------------------CSCSSHHHHHHHCSEE
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc---------------------ccccchhhcCCcCCEE
Confidence            45556666666666666633  22 344455555555555532                     2222222234566666


Q ss_pred             Eecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          258 ELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       258 ~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      ++++|. ...+ .++.+++|+.|++++|.+++-.....+..+++|+.|++++|..
T Consensus        99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            666665 2233 5778889999999999998533324678899999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.69  E-value=1.2e-08  Score=92.50  Aligned_cols=124  Identities=17%  Similarity=0.095  Sum_probs=95.4

Q ss_pred             cEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEee
Q 009616          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFT  240 (531)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~  240 (531)
                      ++++++++.+.. |..+  .++|++|++++|.+........++.+++|++|+|++|...+..  .+.++++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999998877 5444  3499999999998854222224678999999999999765432  3557899999999999


Q ss_pred             c-cccce-eeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChh
Q 009616          241 Y-QELES-VEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQ  289 (531)
Q Consensus       241 ~-~~l~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~  289 (531)
                      . ..+.. ....+++|++|++++|.  +..+..++.+++|+.|+|++|.++.+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            7 33332 23468999999999998  44466789999999999999998753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.67  E-value=7.4e-09  Score=113.28  Aligned_cols=107  Identities=13%  Similarity=-0.019  Sum_probs=51.0

Q ss_pred             CCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEeec-cccceeeeeCCccc
Q 009616          179 CANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVEIAVPSLQ  255 (531)
Q Consensus       179 ~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~  255 (531)
                      +..+++|+.|+|++|.+.  .++..+..+++|++|+|++|... .++  +.++++|+.|++++|. ..++.....+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            334444444444444432  12222234444444444444332 111  2234445555554444 22222233456666


Q ss_pred             EEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616          256 QLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (531)
Q Consensus       256 ~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~  288 (531)
                      +|+|++|. ..+|..++.+++|+.|+|++|.+++
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            66666666 4455556677777777777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.66  E-value=3.3e-08  Score=89.56  Aligned_cols=120  Identities=18%  Similarity=0.068  Sum_probs=65.5

Q ss_pred             cEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEee
Q 009616          164 TSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFT  240 (531)
Q Consensus       164 ~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~  240 (531)
                      ++++++++.+.. |..+  .++|++|+|++|.++.  ++..+.++++|+.|+|++|......  .+.++           
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l-----------   77 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-----------   77 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC-----------
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCC-----------
Confidence            456666666655 3322  3566777776666632  2334556666666666665432211  12233           


Q ss_pred             ccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          241 YQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       241 ~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                                 ++|++|++++|.  ...+..|..+++|+.|+|++|.++. .....+..+++|+.|+|++++
T Consensus        78 -----------~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           78 -----------TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             -----------TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSC
T ss_pred             -----------CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCC
Confidence                       344444444444  1122346667777777777777763 334456667777777777643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.64  E-value=1.8e-08  Score=106.85  Aligned_cols=118  Identities=16%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             ccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEeec-cccceeeeeCCcccEEEec
Q 009616          184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELS  260 (531)
Q Consensus       184 ~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~  260 (531)
                      .|+.|+|++|.+++  ++. ++.+++|+.|+|++|... .+  .+.++++|+.|++++|. ..++ ....+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            46666666666543  333 566666666666666543 22  23456667777777665 3344 23367888888888


Q ss_pred             ccc-ccc--eeeccCCCCccEEEEeCCCCChh--hhhhhhcCCCCCcEEEe
Q 009616          261 FSR-VPR--LLDVAECPHLRKLVLFLPHFNDQ--EFHPLISKFPLLEDLSI  306 (531)
Q Consensus       261 ~~~-~~~--~~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~~~~L~~L~L  306 (531)
                      +|. ...  |..++.+++|+.|+|++|.+++.  ....+...+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888 333  77889999999999999998753  23345566899999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.60  E-value=3.9e-08  Score=87.67  Aligned_cols=35  Identities=34%  Similarity=0.391  Sum_probs=17.8

Q ss_pred             CCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEe
Q 009616          161 KLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYV  195 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~  195 (531)
                      ++|++|++++|.+.+ + ..+.++++|++|++++|.+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   64 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI   64 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence            455555555555544 2 2234455555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=1.9e-07  Score=93.02  Aligned_cols=204  Identities=17%  Similarity=0.122  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcccccCCCccceEEEEEeecccc--CCchhHHHHHHHH-HHcCCcEEEEeeecCC------CccccCCcc
Q 009616           86 KFIRFVDASLHRFCELGFPMQKLRISVSLLEVK--ESSPLFDKWVELA-MENGVKELDFEVITDK------NSVNALPQT  156 (531)
Q Consensus        86 ~f~~~v~~~l~~~~~~~~~l~~l~L~~~~~~~~--~~~~~~~~wl~~~-~~~~l~~L~L~~~~~~------~~~~~lp~~  156 (531)
                      .+.+...+++..  .....++.+.+..-.  +.  .....+..++..+ ..++++.|.+......      .....++..
T Consensus        92 ~~~~~~~~fl~~--~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l  167 (362)
T 2ra8_A           92 EGVNLMDKILKD--KKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV  167 (362)
T ss_dssp             TTCCHHHHHHHC--TTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH
T ss_pred             cHHHHHHHHhcC--CCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHH
Confidence            334445555521  222446666655322  11  1112333443322 2358888887542100      001124444


Q ss_pred             ccCCCCccEEEecCCc-CCCCcCCCCCCccCEEEeeeEEechHhHHHHH-hCCcccceEEeeecCC--cceeeccccccc
Q 009616          157 IFSAKLLTSLKLFGCK-LEQPSHCANLQSLKKLSLDEVYVNDQMVQSLV-RECRVLEDLSFFYCFG--LKRLRISEAHKL  232 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l-~~~~~Le~L~L~~c~~--~~~l~~~~l~~L  232 (531)
                      +..+++|+.|.|++|. +.-++ + .+++|++|+|..+.++...+..+. ..+|+|++|+|..+..  .+...+.     
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~-----  240 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN-----  240 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG-----
T ss_pred             HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH-----
Confidence            5567888888888873 22122 2 378888888888877666666543 3688888888863211  0110000     


Q ss_pred             cEEEEEeeccccceee--eeCCcccEEEecccc-c-cce---eeccCCCCccEEEEeCCCCChhhhhhh---hcCCCCCc
Q 009616          233 KSLILRFTYQELESVE--IAVPSLQQLELSFSR-V-PRL---LDVAECPHLRKLVLFLPHFNDQEFHPL---ISKFPLLE  302 (531)
Q Consensus       233 ~~L~l~~~~~~l~~~~--~~~~~L~~L~l~~~~-~-~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~~---l~~~~~L~  302 (531)
                                .+....  ..+|+|++|.+.+|. . ...   ...+.+++|+.|+|+.|.+++.....+   +.++++|+
T Consensus       241 ----------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          241 ----------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             ----------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             ----------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence                      000000  123445555554443 1 000   011345677777777777765433222   24567777


Q ss_pred             EEEecccc
Q 009616          303 DLSIISLE  310 (531)
Q Consensus       303 ~L~L~~c~  310 (531)
                      .|+|+.|.
T Consensus       311 ~L~L~~n~  318 (362)
T 2ra8_A          311 FINMKYNY  318 (362)
T ss_dssp             EEECCSBB
T ss_pred             EEECCCCc
Confidence            77777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=1.2e-07  Score=94.44  Aligned_cols=131  Identities=16%  Similarity=0.142  Sum_probs=84.3

Q ss_pred             hHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeec---cccceee-eeCCcccEEEeccc--c--cc--c--
Q 009616          199 MVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY---QELESVE-IAVPSLQQLELSFS--R--VP--R--  266 (531)
Q Consensus       199 ~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~---~~l~~~~-~~~~~L~~L~l~~~--~--~~--~--  266 (531)
                      .+..++..+|+|++|.|.+|..+.-..+ .+++|++|++..|.   ..+..+. ..+|+|++|+|+.+  .  +.  .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            4667888999999999998854332223 36899999999875   1122222 26899999998632  1  11  0  


Q ss_pred             ---eeeccCCCCccEEEEeCCCCChhhhhhhh--cCCCCCcEEEeccccch----hHHHh---cCcccceeccccc
Q 009616          267 ---LLDVAECPHLRKLVLFLPHFNDQEFHPLI--SKFPLLEDLSIISLETL----ERIMI---SSNRLMHLEVYNC  330 (531)
Q Consensus       267 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~~l--~~~~~L~~L~L~~c~~l----~~l~~---~~~~L~~L~l~~c  330 (531)
                         ....+.+|+|+.|.|.++.+++.....+.  ..+|+|++|+|+.|..-    ..+..   .+++|+.|++..|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence               11124589999999999998864433332  36789999999876421    11221   2356666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.56  E-value=6.3e-08  Score=87.70  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee--
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--  224 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--  224 (531)
                      .....+|..+.  ++|++|+|++|.+.. |..+.++++|++|+|++|.++.- .+..+.++++|++|+|++|......  
T Consensus        20 ~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~   96 (193)
T 2wfh_A           20 KGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPR   96 (193)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHH
Confidence            34556776554  689999999999887 77788899999999999988532 2334678999999999988653221  


Q ss_pred             eccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccce-eeccCCCCccEEEEeCCCCC
Q 009616          225 RISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRL-LDVAECPHLRKLVLFLPHFN  287 (531)
Q Consensus       225 ~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~  287 (531)
                      .+.+++                      +|++|++++|. ...+ ..+..+++|+.|++++|.+.
T Consensus        97 ~f~~l~----------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           97 TFDGLK----------------------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTTCT----------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HhCCCC----------------------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            122334                      44555555554 2222 24667778888888777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=4.9e-08  Score=96.36  Aligned_cols=54  Identities=9%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             CCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEe
Q 009616          160 AKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSF  215 (531)
Q Consensus       160 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L  215 (531)
                      |++|+.|+|.. .+..  ...+.+|++|+.|++..+.+.. .-+..+.+|..+..+.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPL  155 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECT
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecC
Confidence            67777777776 4443  4456667777777777664311 01122344555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.53  E-value=9.8e-08  Score=85.02  Aligned_cols=123  Identities=18%  Similarity=0.106  Sum_probs=90.1

Q ss_pred             ccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEe
Q 009616          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRF  239 (531)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~  239 (531)
                      .+.++++++++.. |..  ..++|++|++++|.+.. ..+..++.+++|++|++++|.......  +.++++|+.|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT--CCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC--CCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4678888888776 432  34789999999998753 223346788999999999886543222  35678999999999


Q ss_pred             ec-cccce-eeeeCCcccEEEecccc-cccee-eccCCCCccEEEEeCCCCCh
Q 009616          240 TY-QELES-VEIAVPSLQQLELSFSR-VPRLL-DVAECPHLRKLVLFLPHFND  288 (531)
Q Consensus       240 ~~-~~l~~-~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~L~~~~~~~  288 (531)
                      |. ..++. ....+++|++|++++|. ...+. .+..+++|+.|++++|.++.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            87 33332 23467899999999998 43333 36789999999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.51  E-value=7.1e-09  Score=104.10  Aligned_cols=163  Identities=14%  Similarity=0.158  Sum_probs=107.5

Q ss_pred             HHHHHcCCcEEEEeeecCCCc---cccCCcccc-CCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHH
Q 009616          129 ELAMENGVKELDFEVITDKNS---VNALPQTIF-SAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQ  201 (531)
Q Consensus       129 ~~~~~~~l~~L~L~~~~~~~~---~~~lp~~l~-~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~  201 (531)
                      ...+..++++|+++.  +...   ...+...+. .+++|++|+|++|.+..   ......+++|++|+|++|.+++....
T Consensus        67 ~~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           67 SAEVLSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HHHHHTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HHHHHhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            334556889888875  2111   111222222 23789999999998865   22233577899999999998665444


Q ss_pred             HH---H-hCCcccceEEeeecCCcce----e--eccccccccEEEEEeec-c--cc---ceeeeeCCcccEEEecccc-c
Q 009616          202 SL---V-RECRVLEDLSFFYCFGLKR----L--RISEAHKLKSLILRFTY-Q--EL---ESVEIAVPSLQQLELSFSR-V  264 (531)
Q Consensus       202 ~~---l-~~~~~Le~L~L~~c~~~~~----l--~~~~l~~L~~L~l~~~~-~--~l---~~~~~~~~~L~~L~l~~~~-~  264 (531)
                      .+   + ..++.|++|+|++|.....    +  .+..+++|++|++++|. +  +.   .......++|++|++++|. .
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            33   3 3578999999999975221    1  12346889999999987 1  11   1222356799999999998 2


Q ss_pred             c-----ceeeccCCCCccEEEEeCCCCChhhhhh
Q 009616          265 P-----RLLDVAECPHLRKLVLFLPHFNDQEFHP  293 (531)
Q Consensus       265 ~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (531)
                      .     ....+...++|+.|+|++|.+++.....
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            1     2233556799999999999999765443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.50  E-value=4.9e-08  Score=106.76  Aligned_cols=109  Identities=16%  Similarity=0.108  Sum_probs=86.1

Q ss_pred             HHHHHhCCcccceEEeeecCCcceee--ccccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCC
Q 009616          200 VQSLVRECRVLEDLSFFYCFGLKRLR--ISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPH  275 (531)
Q Consensus       200 l~~~l~~~~~Le~L~L~~c~~~~~l~--~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~  275 (531)
                      .+..+..++.|+.|+|++|... .++  +.++++|++|+|++|. ..++....++++|++|+|++|. ..+|..++.+++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            3555788999999999999764 332  3468999999999997 4444444579999999999999 667888999999


Q ss_pred             ccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          276 LRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       276 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      |+.|+|++|.++ . ++..+.++++|+.|+|++|..
T Consensus       295 L~~L~L~~N~l~-~-lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          295 LKYFYFFDNMVT-T-LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CSEEECCSSCCC-C-CCSSTTSCTTCCCEECTTSCC
T ss_pred             CCEEECCCCCCC-c-cChhhhcCCCccEEeCCCCcc
Confidence            999999999997 3 455588999999999999864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=1.7e-07  Score=82.51  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=69.6

Q ss_pred             ccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEE-echHhHHHHHhC---CcccceEEeeecCCccee
Q 009616          151 NALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRE---CRVLEDLSFFYCFGLKRL  224 (531)
Q Consensus       151 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~---~~~Le~L~L~~c~~~~~l  224 (531)
                      ..+|.....-..|++|++++|.++.  ...+.++++|++|+|++|. +++..+..+-..   |++|++|+|++|..++.-
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            4566544444679999999998765  4556789999999999996 588888886542   678999999999887652


Q ss_pred             ---eccccccccEEEEEeec
Q 009616          225 ---RISEAHKLKSLILRFTY  241 (531)
Q Consensus       225 ---~~~~l~~L~~L~l~~~~  241 (531)
                         .+.++++|++|++++|.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHhcCCCCCEEECCCCC
Confidence               34467888888888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=4e-07  Score=89.76  Aligned_cols=78  Identities=14%  Similarity=0.005  Sum_probs=47.3

Q ss_pred             cccccEEEEEeec-ccccee-eeeCCcccEEEecccc-ccceeeccCCCCcc-EEEEeCCCCChhhhhhhhcCCCCCcEE
Q 009616          229 AHKLKSLILRFTY-QELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLR-KLVLFLPHFNDQEFHPLISKFPLLEDL  304 (531)
Q Consensus       229 l~~L~~L~l~~~~-~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~l~~~~~L~~L  304 (531)
                      |++|+.+++.+|. ..++.- ..+|++|+++.+.++- ......|.+|++|+ .+.+.. .++ ......+.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence            5677777777654 222222 2357777777777664 22233577777777 777765 444 2334556677777777


Q ss_pred             Eecc
Q 009616          305 SIIS  308 (531)
Q Consensus       305 ~L~~  308 (531)
                      ++..
T Consensus       303 ~l~~  306 (329)
T 3sb4_A          303 LATG  306 (329)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            7754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.26  E-value=4.9e-07  Score=79.97  Aligned_cols=98  Identities=18%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             CcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          136 VKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       136 l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .+.++++.    .....+|..+.  ++|++|+|++|.+.+  +..+.++++|++|+|++|.+.. ..+..+..+++|++|
T Consensus        11 ~~~l~~s~----n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSG----KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTT----SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCEEEeCC----CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEE
Confidence            34555543    33455666553  678888888887776  4456778888888888877742 122334667777777


Q ss_pred             EeeecCCcceee--ccccccccEEEEEee
Q 009616          214 SFFYCFGLKRLR--ISEAHKLKSLILRFT  240 (531)
Q Consensus       214 ~L~~c~~~~~l~--~~~l~~L~~L~l~~~  240 (531)
                      +|++|...+...  +.++++|+.|++++|
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            777765432111  223445555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.23  E-value=8e-07  Score=78.90  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=44.7

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCC
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~  220 (531)
                      ....+|..+.  ++|++|+|++|.+.+  +..+.++++|++|+|++|.+.. ..+..+.++++|++|+|++|..
T Consensus        23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCcc
Confidence            3456666554  677888888887776  4456777788888887777643 1222345667777777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.19  E-value=2.8e-06  Score=85.98  Aligned_cols=213  Identities=10%  Similarity=0.095  Sum_probs=109.8

Q ss_pred             CCccEEEecCCcCCC--CcCCCCCCccCEEEeeeE--EechHhHHHHHhCCcccceEEeeecCCcceeecc--ccccccE
Q 009616          161 KLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEV--YVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRIS--EAHKLKS  234 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~--~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~--~l~~L~~  234 (531)
                      .+|+.+.+..+ +..  ...+.++ +|+.+.+...  .+..    ..+.+|++|+.+++.++.. ..+.-.  .+.+|+.
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~  207 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEE  207 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECS----STTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSE
T ss_pred             CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehH----HHhhCcccCCeeecCCCcc-eEechhhEeecccCE
Confidence            36888887665 222  2334443 5777777642  1111    2256788888888865532 222211  2467777


Q ss_pred             EEEEeecccccee-eeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccch
Q 009616          235 LILRFTYQELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETL  312 (531)
Q Consensus       235 L~l~~~~~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l  312 (531)
                      +.+..+-..+..- ..+|++|+.+.+..+- ......|.+ .+|+.+.+. +.++ ......+.+|++|+.+.+.++...
T Consensus       208 l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          208 VLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCC
T ss_pred             EEeCCchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCcccc
Confidence            7775332112211 2257778888877654 111223445 678888884 3333 223455677888888887663211


Q ss_pred             hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhcccc
Q 009616          313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQI  392 (531)
Q Consensus       313 ~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L  392 (531)
                      ..   ....+..-.+.+|.+|+.+.+. .+++++   +   ...|.++++|+.+.|.  ........    ..+.++ +|
T Consensus       285 ~~---~~~~I~~~aF~~c~~L~~l~l~-~~i~~I---~---~~aF~~c~~L~~l~lp--~~l~~I~~----~aF~~~-~L  347 (401)
T 4fdw_A          285 DD---PEAMIHPYCLEGCPKLARFEIP-ESIRIL---G---QGLLGGNRKVTQLTIP--ANVTQINF----SAFNNT-GI  347 (401)
T ss_dssp             CC---TTCEECTTTTTTCTTCCEECCC-TTCCEE---C---TTTTTTCCSCCEEEEC--TTCCEECT----TSSSSS-CC
T ss_pred             CC---cccEECHHHhhCCccCCeEEeC-CceEEE---h---hhhhcCCCCccEEEEC--ccccEEcH----HhCCCC-CC
Confidence            00   0001111124446666555544 233222   1   1345567788888885  22222111    334677 88


Q ss_pred             ceeEEEee
Q 009616          393 GELHLSLN  400 (531)
Q Consensus       393 ~~L~L~~~  400 (531)
                      +.+.+..+
T Consensus       348 ~~l~l~~n  355 (401)
T 4fdw_A          348 KEVKVEGT  355 (401)
T ss_dssp             CEEEECCS
T ss_pred             CEEEEcCC
Confidence            88887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.17  E-value=1.5e-06  Score=76.79  Aligned_cols=55  Identities=15%  Similarity=0.059  Sum_probs=37.8

Q ss_pred             CccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecC
Q 009616          162 LLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCF  219 (531)
Q Consensus       162 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~  219 (531)
                      +.++++++++.+.. |..+  .++|++|+|++|.+..- .+..+.++++|++|+|++|.
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~   65 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQ   65 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCC
Confidence            35789999998887 5444  47888899888887431 23335566677777776664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=1.2e-06  Score=76.95  Aligned_cols=42  Identities=5%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             CCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee
Q 009616          182 LQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL  224 (531)
Q Consensus       182 l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l  224 (531)
                      -.+|++|+++++.+++.++.. +++|++|++|+|++|..++..
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~  101 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDG  101 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHH
T ss_pred             CceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHH
Confidence            357999999999998877776 478999999999999876653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.00  E-value=2.1e-05  Score=79.58  Aligned_cols=164  Identities=14%  Similarity=0.167  Sum_probs=97.7

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +++.+.+..     ....++...+.-.+|+.+.+.. .+..  ...+.+|++|+.++|..+.+..  ++.-.-.|..|+.
T Consensus       136 ~L~~i~l~~-----~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~  207 (401)
T 4fdw_A          136 QIAKVVLNE-----GLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEE  207 (401)
T ss_dssp             CCSEEECCT-----TCCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSE
T ss_pred             CccEEEeCC-----CccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCE
Confidence            456555432     1334444433334688888876 3332  4567778888888888765521  1111123678888


Q ss_pred             EEeeecCCccee---eccccccccEEEEEeeccccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCCh
Q 009616          213 LSFFYCFGLKRL---RISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFND  288 (531)
Q Consensus       213 L~L~~c~~~~~l---~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~  288 (531)
                      +.|..+  +..+   ...+|++|+.+++..+-..+..-.+...+|+.+.+..+- ......|.+|++|+.+.+.++.+..
T Consensus       208 l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          208 VLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             EEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence            888643  3332   344678888888865432222222233678888885554 2223467888888888887766541


Q ss_pred             ----hhhhhhhcCCCCCcEEEecc
Q 009616          289 ----QEFHPLISKFPLLEDLSIIS  308 (531)
Q Consensus       289 ----~~~~~~l~~~~~L~~L~L~~  308 (531)
                          ......+.+|++|+.+.|..
T Consensus       286 ~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          286 DPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CTTCEECTTTTTTCTTCCEECCCT
T ss_pred             CcccEECHHHhhCCccCCeEEeCC
Confidence                12345677888888888864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.97  E-value=9.2e-06  Score=71.94  Aligned_cols=60  Identities=15%  Similarity=0.091  Sum_probs=38.3

Q ss_pred             eCCcccEEEecccc-cccee-eccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          250 AVPSLQQLELSFSR-VPRLL-DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       250 ~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      .+++|++|++++|. ...+. .++.+++|+.|+|++|.++. .....+..+++|+.|+|+++.
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC
T ss_pred             CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCC
Confidence            45566666666666 22332 35677777888887777773 334456677788888887754

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.92  E-value=4.6e-06  Score=79.34  Aligned_cols=36  Identities=14%  Similarity=0.520  Sum_probs=34.1

Q ss_pred             ccCCCCChHHHHHHhcCCChHHHH-HHhhhhhhhhhh
Q 009616            8 DHISDLPTFIIHHIMSFLSPKDVV-RTGILSTTWRKF   43 (531)
Q Consensus         8 D~is~LPd~iL~~Ils~L~~~d~~-r~s~vSkrWr~l   43 (531)
                      ..+..||+|||.+||++||.++++ |+++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999986

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.89  E-value=2.8e-06  Score=79.86  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=32.7

Q ss_pred             cCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            9 HISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         9 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      -|++||+||+.+|||||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            37789999999999999999999999999999964

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.83  E-value=8.6e-06  Score=72.93  Aligned_cols=60  Identities=10%  Similarity=0.044  Sum_probs=40.6

Q ss_pred             CCcccEEEecccc-cc-----ceeeccCCCCccEEEE--eCCCCChhh---hhhhhcCCCCCcEEEecccc
Q 009616          251 VPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVL--FLPHFNDQE---FHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L--~~~~~~~~~---~~~~l~~~~~L~~L~L~~c~  310 (531)
                      .++|++|++++|. +.     ....+...++|+.|+|  ++|.+++..   +...+...++|+.|+|++|.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            4566666666665 11     2234566778888888  778888753   44556667889999988875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.73  E-value=1.7e-05  Score=78.47  Aligned_cols=90  Identities=17%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             ccccCCccccCCCCccEEEecC-CcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          149 SVNALPQTIFSAKLLTSLKLFG-CKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      ....+|. +..+++|++|+|++ |.+.+ + ..+.++++|++|+|++|.+.+ ..+..+.++++|++|+|++|...+ ++
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~-~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALES-LS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCSC-CC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCccce-eC
Confidence            4567888 88888999999996 88877 4 567889999999999998854 234456788889999988886532 22


Q ss_pred             cc--ccccccEEEEEeec
Q 009616          226 IS--EAHKLKSLILRFTY  241 (531)
Q Consensus       226 ~~--~l~~L~~L~l~~~~  241 (531)
                      ..  ....|+.|++.+|.
T Consensus        97 ~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           97 WKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             STTTCSCCCCEEECCSSC
T ss_pred             HHHcccCCceEEEeeCCC
Confidence            11  11226666665553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.64  E-value=1.3e-05  Score=71.76  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=35.6

Q ss_pred             CCCCccEEEecCC-cCCC------CcCCCCCCccCEEEeeeEEechHh---HHHHHhCCcccceEEeeecCC
Q 009616          159 SAKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVYVNDQM---VQSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       159 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~~l~~~~~Le~L~L~~c~~  220 (531)
                      .+++|++|+|++| .+..      ...+...++|++|+|++|.+++..   +...+...+.|++|+|++|..
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3466667777766 5543      122344566777777777664433   333345566677777766653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.60  E-value=1.7e-05  Score=81.45  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=37.7

Q ss_pred             CCCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhc
Q 009616            4 TVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQT   45 (531)
Q Consensus         4 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~   45 (531)
                      ....|.|+.||+||+.+||+||+.+|+++++.|||+|+++-.
T Consensus         9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B            9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            345689999999999999999999999999999999997643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.58  E-value=3.6e-05  Score=76.13  Aligned_cols=75  Identities=15%  Similarity=0.091  Sum_probs=49.2

Q ss_pred             EEEecCC-cCCC-CcCCCCCCccCEEEeee-EEechHhHHHHHhCCcccceEEeeecCCccee--eccccccccEEEEEe
Q 009616          165 SLKLFGC-KLEQ-PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL--RISEAHKLKSLILRF  239 (531)
Q Consensus       165 ~L~L~~~-~l~~-~~~~~~l~~L~~L~L~~-~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l--~~~~l~~L~~L~l~~  239 (531)
                      .++++++ ++.. |. +..+++|++|+|++ |.+.. ..+..++++++|++|+|++|...+..  .+.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677887 7877 66 88889999999986 77743 12234677888888888887543221  123455555555555


Q ss_pred             ec
Q 009616          240 TY  241 (531)
Q Consensus       240 ~~  241 (531)
                      |.
T Consensus        90 N~   91 (347)
T 2ifg_A           90 NA   91 (347)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.47  E-value=5.6e-05  Score=77.24  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=37.5

Q ss_pred             CCCCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            3 ETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         3 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      +....|.|+.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            44567999999999999999999999999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.45  E-value=3.8e-05  Score=78.38  Aligned_cols=42  Identities=24%  Similarity=0.521  Sum_probs=38.1

Q ss_pred             CCCCCCccCCCCChH----HHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            2 DETVDADHISDLPTF----IIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         2 ~~~~~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      ++....|.|+.||+|    |+.+||+||+.++++++++|||+|+++
T Consensus         3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            445567999999999    999999999999999999999999954

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.35  E-value=0.00028  Score=71.12  Aligned_cols=54  Identities=9%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             eCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          250 AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       250 ~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      .+.+|+.+.+..+. ......+..++.++.+.+....+.    ...+..+.+|+.+.+.
T Consensus       251 ~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          251 GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEEC
T ss_pred             ccccceeEEcCCCcceeeccccccccccceeccCceeec----cccccccccccccccc
Confidence            34555555554443 111223445555555555433222    2234456666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.19  E-value=0.0002  Score=72.24  Aligned_cols=55  Identities=9%  Similarity=-0.036  Sum_probs=23.0

Q ss_pred             CCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          251 VPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      +.+|+.+.+.... ......+.++.+|+.+.+..+..+  .....+.+++.++.+...
T Consensus       229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~  284 (394)
T 4fs7_A          229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYG  284 (394)
T ss_dssp             TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEEC
T ss_pred             cCCCceEEECCCceecccccccccccceeEEcCCCcce--eeccccccccccceeccC
Confidence            3445555444332 111123445555555555433221  112234455555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.97  E-value=0.00019  Score=67.74  Aligned_cols=59  Identities=22%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             CCCccEEEecCCcCCC----CcCCCCCCccCEEEeeeEEechH-hHHHHHhCCcccceEEeeecCC
Q 009616          160 AKLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDEVYVNDQ-MVQSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       160 ~~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~-~l~~~l~~~~~Le~L~L~~c~~  220 (531)
                      +++|++|+|++|.+.+    +..+..+++|+.|+|++|.+.+. .+.. +..+ .|++|+|.+|+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSL  232 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTT
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcC
Confidence            4566666666666655    12223566666666666666321 2222 1222 566666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.94  E-value=0.0012  Score=66.43  Aligned_cols=78  Identities=10%  Similarity=0.169  Sum_probs=34.0

Q ss_pred             ccCCCCccEEEecCCc---CCC--CcCCCCCCccCEEEeeeEE--echHhHHHHHhCCcccceEEeeecCC-cceeeccc
Q 009616          157 IFSAKLLTSLKLFGCK---LEQ--PSHCANLQSLKKLSLDEVY--VNDQMVQSLVRECRVLEDLSFFYCFG-LKRLRISE  228 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~---l~~--~~~~~~l~~L~~L~L~~~~--~~~~~l~~~l~~~~~Le~L~L~~c~~-~~~l~~~~  228 (531)
                      +.+|.+|+.+.+..+.   +..  ...+.++.+|+.+.+..+-  +..    ..+..|.+|+.+.+..... ++.....+
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~----~aF~~c~~L~~i~lp~~~~~I~~~~F~~  158 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDS----EAFHHCEELDTVTIPEGVTSVADGMFSY  158 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECT----TTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehh----hhhhhhcccccccccceeeeecccceec
Confidence            3456667777665542   211  2334445555554443221  111    1134566666666532211 11122234


Q ss_pred             cccccEEEEE
Q 009616          229 AHKLKSLILR  238 (531)
Q Consensus       229 l~~L~~L~l~  238 (531)
                      |.+|+.+.+.
T Consensus       159 c~~L~~i~~~  168 (394)
T 4gt6_A          159 CYSLHTVTLP  168 (394)
T ss_dssp             CTTCCEEECC
T ss_pred             cccccccccc
Confidence            4555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.75  E-value=0.00058  Score=64.43  Aligned_cols=13  Identities=23%  Similarity=0.048  Sum_probs=6.9

Q ss_pred             CccEEEEeCCCCC
Q 009616          275 HLRKLVLFLPHFN  287 (531)
Q Consensus       275 ~L~~L~L~~~~~~  287 (531)
                      +|+.|+|++|.++
T Consensus       221 ~L~~L~L~~Npl~  233 (267)
T 3rw6_A          221 KLEELWLDGNSLC  233 (267)
T ss_dssp             CCSEEECTTSTTG
T ss_pred             CcceEEccCCcCc
Confidence            5555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.67  E-value=0.019  Score=57.55  Aligned_cols=56  Identities=21%  Similarity=0.196  Sum_probs=26.6

Q ss_pred             eCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEec
Q 009616          250 AVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSII  307 (531)
Q Consensus       250 ~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~  307 (531)
                      ++++|+.+.+...- .-....|.+|++|+.+.|..+ ++ ..-...+.+|.+|+.+.|.
T Consensus       286 ~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          286 NCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEC
T ss_pred             cccccccccCCCcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEEC
Confidence            45566666654333 111224555666666665322 22 1122345556666666653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.85  E-value=0.032  Score=49.64  Aligned_cols=21  Identities=10%  Similarity=0.127  Sum_probs=13.6

Q ss_pred             HhHHHHHhCCcccceEEeeec
Q 009616          198 QMVQSLVRECRVLEDLSFFYC  218 (531)
Q Consensus       198 ~~l~~~l~~~~~Le~L~L~~c  218 (531)
                      ..+..++.+-+.|++|+|+++
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~n   51 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNM   51 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTC
T ss_pred             HHHHHHHhcCCCccEEECCCC
Confidence            345666666677777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.22  E-value=0.17  Score=49.96  Aligned_cols=12  Identities=17%  Similarity=0.382  Sum_probs=6.6

Q ss_pred             CCCCccCEEEee
Q 009616          180 ANLQSLKKLSLD  191 (531)
Q Consensus       180 ~~l~~L~~L~L~  191 (531)
                      ..+.+++...+.
T Consensus       155 ~~~~~l~~~~~~  166 (379)
T 4h09_A          155 YKAENLEKIEVS  166 (379)
T ss_dssp             TTCTTCCEEEEC
T ss_pred             cccccccccccc
Confidence            445566665554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.16  E-value=0.14  Score=50.56  Aligned_cols=104  Identities=12%  Similarity=0.081  Sum_probs=60.2

Q ss_pred             HhCCcccceEEeeecCC-cceeeccccccccEEEEEeecccccee-eeeCCcccEEEecccc-ccceeeccCCCCccEEE
Q 009616          204 VRECRVLEDLSFFYCFG-LKRLRISEAHKLKSLILRFTYQELESV-EIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLV  280 (531)
Q Consensus       204 l~~~~~Le~L~L~~c~~-~~~l~~~~l~~L~~L~l~~~~~~l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~  280 (531)
                      ...|..|+.+.+...-. ++.-...++..|+.+.+..+-..+... ..++.+|+.+.+.... ......|.+|++|+.+.
T Consensus       213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEE
T ss_pred             cccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccccceecccccccccccccccc
Confidence            45667777776643311 112223356777777765432111111 1256777777776554 11223577888888888


Q ss_pred             EeCCCCChhhhhhhhcCCCCCcEEEecc
Q 009616          281 LFLPHFNDQEFHPLISKFPLLEDLSIIS  308 (531)
Q Consensus       281 L~~~~~~~~~~~~~l~~~~~L~~L~L~~  308 (531)
                      +..+.++ ......+.+|.+|+.+.|..
T Consensus       293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          293 MDNSAIE-TLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             ECCTTCC-EECTTTTTTCTTCCEEECCT
T ss_pred             ccccccc-eehhhhhcCCCCCCEEEcCc
Confidence            8766655 23345577888888888853

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.77  E-value=0.041  Score=48.98  Aligned_cols=98  Identities=11%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHHc--CCcEEEEeee-c-CCCccccCCccccCCCCccEEEecCCcCCC------CcCCCCCCccCEEEe
Q 009616          121 SPLFDKWVELAMEN--GVKELDFEVI-T-DKNSVNALPQTIFSAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSL  190 (531)
Q Consensus       121 ~~~~~~wl~~~~~~--~l~~L~L~~~-~-~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L  190 (531)
                      ..+++.++..+...  .+++|+|+.. . +......+-..+..-++|+.|+|++|.+..      ...+..-+.|++|+|
T Consensus        26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            34566777666543  5777776531 0 000111222233344677777777777654      111123466777777


Q ss_pred             eeEEechHhHHHH---HhCCcccceEEeeec
Q 009616          191 DEVYVNDQMVQSL---VRECRVLEDLSFFYC  218 (531)
Q Consensus       191 ~~~~~~~~~l~~~---l~~~~~Le~L~L~~c  218 (531)
                      +.|.+++.+...+   +..-+.|++|+|++|
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            7777755444433   333445666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=87.31  E-value=0.51  Score=38.77  Aligned_cols=42  Identities=26%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             cCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEe
Q 009616          152 ALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYV  195 (531)
Q Consensus       152 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~  195 (531)
                      .+|..+.  .+|++|+|++|.+..  +..+..+++|++|+|.+|.+
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            6665432  468899999998877  34456788899999988877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	531
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	5e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 8  DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF 43
          D IS LP  +  +++SFL PKD+++       WR  
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 8  DHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFPVL 50
          D I+ LP  I   I ++L  +D++ +  +S  W K       L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 8  DHISDLPTF----IIHHIMSFLSPKDVVRTGILSTTWRKF 43
          D I+ LP      I  +I+S+L  K +    ++   W + 
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	531
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.56
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.34
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.31
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.16
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.1
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.99
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.84
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.76
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.71
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.66
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.79
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.92

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.56  E-value=6.5e-16  Score=149.94  Aligned_cols=242  Identities=14%  Similarity=0.074  Sum_probs=119.6

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecC-CcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFG-CKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      +|.+|+|... .-.....+|..++++++|++|+|++ |.+.+  |..++++++|++|+|++|.+.+. .+..+..++.|+
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhc
Confidence            4667777652 1122335777777777777777776 56665  66677777777777777766331 223345666677


Q ss_pred             eEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCc-cEEEEeCCCCCh
Q 009616          212 DLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHL-RKLVLFLPHFND  288 (531)
Q Consensus       212 ~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L-~~L~L~~~~~~~  288 (531)
                      .+++++|.....++                    ....++++|+.+++++|.  +..|..+..+..+ +.++++++.+++
T Consensus       129 ~l~l~~N~~~~~~p--------------------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         129 TLDFSYNALSGTLP--------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             EEECCSSEEESCCC--------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccCc--------------------hhhccCcccceeeccccccccccccccccccccccccccccccccc
Confidence            77666665433321                    112234444444444444  2334444444443 455555555543


Q ss_pred             hhhhhhhcCCCCCcEEEeccccchhHHHh---cCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcE
Q 009616          289 QEFHPLISKFPLLEDLSIISLETLERIMI---SSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLN  365 (531)
Q Consensus       289 ~~~~~~l~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~  365 (531)
                      .. +..+.+... ..+++..+.....+..   ..+.++.+.+.           ..++      .+. +..++..++|+.
T Consensus       189 ~~-~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~-----------~~~l------~~~-~~~~~~~~~L~~  248 (313)
T d1ogqa_         189 KI-PPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLA-----------KNSL------AFD-LGKVGLSKNLNG  248 (313)
T ss_dssp             EC-CGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECC-----------SSEE------CCB-GGGCCCCTTCCE
T ss_pred             cc-ccccccccc-cccccccccccccccccccccccccccccc-----------cccc------ccc-cccccccccccc
Confidence            22 222223322 2344444322111100   11122222211           1111      011 123344566777


Q ss_pred             EEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          366 VLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       366 L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      |+++. +.+.    +.++..+.++++|+.|+|+.|...+.  ||       ..+.+.+|+.+.+.+|
T Consensus       249 L~Ls~-N~l~----g~iP~~l~~L~~L~~L~Ls~N~l~g~--iP-------~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         249 LDLRN-NRIY----GTLPQGLTQLKFLHSLNVSFNNLCGE--IP-------QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             EECCS-SCCE----ECCCGGGGGCTTCCEEECCSSEEEEE--CC-------CSTTGGGSCGGGTCSS
T ss_pred             ccCcc-Ceec----ccCChHHhCCCCCCEEECcCCccccc--CC-------CcccCCCCCHHHhCCC
Confidence            77763 3322    22334456677777777776666554  45       3455666666666555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=3.9e-14  Score=140.88  Aligned_cols=270  Identities=14%  Similarity=0.131  Sum_probs=143.4

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .++++|++..  .  ....+ ..+..+++|++|+|++|.+++.+.++++++|++|++++|.+.+  +.. ++.+++|+.|
T Consensus        44 ~~l~~L~l~~--~--~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~--i~~-l~~l~~L~~L  115 (384)
T d2omza2          44 DQVTTLQADR--L--GIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGL  115 (384)
T ss_dssp             TTCCEEECCS--S--CCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEE
T ss_pred             CCCCEEECCC--C--CCCCc-cccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc--ccc-cccccccccc
Confidence            5799999875  2  22234 3567789999999999999885568899999999999998843  222 6889999999


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-------------------------------------------cccceeeee
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-------------------------------------------QELESVEIA  250 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-------------------------------------------~~l~~~~~~  250 (531)
                      ++.++.............+..+....+.                                           .........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            9987754221111111122222221111                                           000011123


Q ss_pred             CCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccchhHH-HhcCcccceecccc
Q 009616          251 VPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLETLERI-MISSNRLMHLEVYN  329 (531)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~  329 (531)
                      +++++.+.++++........+.+++|+.|+++++.+++  ++ .+..+++|+.|++++|...... ....++|+.|++.+
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             ccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cc-hhhcccccchhccccCccCCCCcccccccCCEeeccC
Confidence            45666666666651111234556667777776666654  11 2455666777766665421110 11234555555544


Q ss_pred             cc--chhhhcccCCCcceeEeecCCcC--ceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeee
Q 009616          330 CS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVL  405 (531)
Q Consensus       330 c~--~L~~l~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~  405 (531)
                      +.  ++..+ ...+.++.+...+..+.  ..+..+++++.+++++ +.+.+..      .+..+++|+.|+++.|..+. 
T Consensus       273 ~~l~~~~~~-~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~-n~l~~l~------~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         273 NQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-NNISDIS------PVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             SCCCCCGGG-TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS-SCCSCCG------GGGGCTTCCEEECCSSCCCC-
T ss_pred             cccCCCCcc-ccccccccccccccccccccccchhcccCeEECCC-CCCCCCc------ccccCCCCCEEECCCCCCCC-
Confidence            22  11111 11222333333332221  2233456666666664 3333211      14566677776666544321 


Q ss_pred             eeeccccccCCCCCCCcccceEEEEEe
Q 009616          406 FNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       406 ~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                        +|       .+..+++|++|++++|
T Consensus       344 --l~-------~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         344 --VS-------SLANLTNINWLSAGHN  361 (384)
T ss_dssp             --CG-------GGGGCTTCCEEECCSS
T ss_pred             --Ch-------hHcCCCCCCEEECCCC
Confidence              23       2444566777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.9e-15  Score=140.41  Aligned_cols=194  Identities=17%  Similarity=0.185  Sum_probs=93.5

Q ss_pred             CCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEE
Q 009616          160 AKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLI  236 (531)
Q Consensus       160 ~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~  236 (531)
                      ..+|++|++++|.+..   ...+..+++|++|+|+++.+++..+.. ++.+++|++|++++|..++...           
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~-----------  112 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFA-----------  112 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHH-----------
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccc-----------
Confidence            3456666666655443   222345566666666655554433333 4455566666665555443211           


Q ss_pred             EEeeccccceeeeeCCcccEEEecccc-c---cceeec-cCCCCccEEEEeCC--CCChhhhhhhhcCCCCCcEEEeccc
Q 009616          237 LRFTYQELESVEIAVPSLQQLELSFSR-V---PRLLDV-AECPHLRKLVLFLP--HFNDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       237 l~~~~~~l~~~~~~~~~L~~L~l~~~~-~---~~~~~~-~~~~~L~~L~L~~~--~~~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                             +..+...+++|++|++++|. .   .....+ ..+++|+.|++++.  .+++..+..+..+||+|++|++++|
T Consensus       113 -------l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         113 -------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             -------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             -------cchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence                   11112234444444444443 0   001111 22345566665542  3555555555666667777777666


Q ss_pred             cchhHHH----hcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHH
Q 009616          310 ETLERIM----ISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEF  385 (531)
Q Consensus       310 ~~l~~l~----~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  385 (531)
                      ..++.-.    ..+++|++|++.+|.++..-.                ...++++++|+.|++++ +    .....+..+
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~----------------l~~L~~~~~L~~L~l~~-~----~~d~~l~~l  244 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET----------------LLELGEIPTLKTLQVFG-I----VPDGTLQLL  244 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG----------------GGGGGGCTTCCEEECTT-S----SCTTCHHHH
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHH----------------HHHHhcCCCCCEEeeeC-C----CCHHHHHHH
Confidence            5433211    123455555555554432110                11234567788888763 1    122334455


Q ss_pred             Hhhccccc
Q 009616          386 IGAFNQIG  393 (531)
Q Consensus       386 l~~l~~L~  393 (531)
                      ...+++|+
T Consensus       245 ~~~lp~L~  252 (284)
T d2astb2         245 KEALPHLQ  252 (284)
T ss_dssp             HHHSTTSE
T ss_pred             HHhCcccc
Confidence            56677665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-15  Score=143.48  Aligned_cols=186  Identities=20%  Similarity=0.284  Sum_probs=137.9

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEE-echHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVY-VNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+++.  .......++..+..|++|++|+|++|.+..  +..++.+++|++|++++|. +++..+..+..+||+|
T Consensus        46 ~~L~~LdLs~--~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTT--CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCC--CccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3789998865  222223344456689999999999998876  5567789999999999964 5777888888999999


Q ss_pred             ceEEeeecCCcceee----c-cccccccEEEEEeec-----cccceeeeeCCcccEEEecccc---ccceeeccCCCCcc
Q 009616          211 EDLSFFYCFGLKRLR----I-SEAHKLKSLILRFTY-----QELESVEIAVPSLQQLELSFSR---VPRLLDVAECPHLR  277 (531)
Q Consensus       211 e~L~L~~c~~~~~l~----~-~~l~~L~~L~l~~~~-----~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~  277 (531)
                      ++|++++|..+....    + ..+++|+.|++++|.     ..+..+..++|+|++|++++|.   ......+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999999998765422    1 235899999999874     2233344578999999999886   33445678899999


Q ss_pred             EEEEeC-CCCChhhhhhhhcCCCCCcEEEeccccc---hhHHHhcCccc
Q 009616          278 KLVLFL-PHFNDQEFHPLISKFPLLEDLSIISLET---LERIMISSNRL  322 (531)
Q Consensus       278 ~L~L~~-~~~~~~~~~~~l~~~~~L~~L~L~~c~~---l~~l~~~~~~L  322 (531)
                      +|++++ ..+++..+.. ++++|+|+.|++.+|..   +..+...+++|
T Consensus       204 ~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         204 HLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHL  251 (284)
T ss_dssp             EEECTTCTTCCGGGGGG-GGGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             EEECCCCCCCChHHHHH-HhcCCCCCEEeeeCCCCHHHHHHHHHhCccc
Confidence            999987 4678765555 57899999999999832   33333334444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=6.8e-13  Score=131.68  Aligned_cols=269  Identities=15%  Similarity=0.151  Sum_probs=175.0

Q ss_pred             HcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          133 ENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       133 ~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      .+++++|+++.  +  ....+|. +.++++|++|++++|.+.+...++++++|+.|+++++.+.+...   ......+..
T Consensus        65 L~nL~~L~Ls~--N--~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~---~~~~~~~~~  136 (384)
T d2omza2          65 LNNLTQINFSN--N--QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNR  136 (384)
T ss_dssp             CTTCCEEECCS--S--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GTTCTTCSE
T ss_pred             CCCCCEEeCcC--C--cCCCCcc-ccCCcccccccccccccccccccccccccccccccccccccccc---ccccccccc
Confidence            36899999986  2  3445654 78899999999999999885568899999999999887643211   123334444


Q ss_pred             EEeeecCC-------------------------------------------cceeeccccccccEEEEEeec-cccceee
Q 009616          213 LSFFYCFG-------------------------------------------LKRLRISEAHKLKSLILRFTY-QELESVE  248 (531)
Q Consensus       213 L~L~~c~~-------------------------------------------~~~l~~~~l~~L~~L~l~~~~-~~l~~~~  248 (531)
                      +....+..                                           ........+++++.+++++|. ..+.. .
T Consensus       137 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~  215 (384)
T d2omza2         137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-L  215 (384)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-c
Confidence            44333211                                           000122346889999998876 22222 2


Q ss_pred             eeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccccc--hhHHHhcCcccceec
Q 009616          249 IAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLET--LERIMISSNRLMHLE  326 (531)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~~--l~~l~~~~~~L~~L~  326 (531)
                      ..+++|++|++++|.......+..+++|+.|+++++.+++-  . -+..+++|+.|+++++..  +.. ....+.++.+.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--A-PLSGLTKLTELKLGANQISNISP-LAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC--C-cccccccCCEeeccCcccCCCCc-ccccccccccc
Confidence            35789999999999833334678899999999999988852  2 266789999999988653  221 11234455555


Q ss_pred             ccccc--chhhhcccCCCcceeEeecCCcC--ceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeee
Q 009616          327 VYNCS--GLNRINVDAPNLVSFDFEDNPIP--IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYK  402 (531)
Q Consensus       327 l~~c~--~L~~l~~~~~nL~sl~~~~~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~  402 (531)
                      +..+.  .+..+ ...++++.+.+++..+.  ..+..+++|++|++++ +.+...     + .+.++++|+.|+++.|..
T Consensus       292 ~~~n~l~~~~~~-~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~-n~l~~l-----~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         292 LNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN-NKVSDV-----S-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             CCSSCCSCCGGG-GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCS-SCCCCC-----G-GGGGCTTCCEEECCSSCC
T ss_pred             cccccccccccc-chhcccCeEECCCCCCCCCcccccCCCCCEEECCC-CCCCCC-----h-hHcCCCCCCEEECCCCcC
Confidence            44321  11111 23345555555554443  2356789999999985 444431     1 367899999999987765


Q ss_pred             eeeeeeccccccCCCCCCCcccceEEEEEe
Q 009616          403 QVLFNIDEFRSCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       403 ~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~  432 (531)
                      ..   ++       .+..+++|+.|+|+.|
T Consensus       364 ~~---l~-------~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         364 SD---LT-------PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CB---CG-------GGTTCTTCSEEECCCE
T ss_pred             CC---Ch-------hhccCCCCCEeeCCCC
Confidence            43   34       2567789999998765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.37  E-value=1.9e-13  Score=132.16  Aligned_cols=227  Identities=15%  Similarity=0.115  Sum_probs=142.3

Q ss_pred             CCccEEEecCCcCCC----CcCCCCCCccCEEEeee-EEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616          161 KLLTSLKLFGCKLEQ----PSHCANLQSLKKLSLDE-VYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~-~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L  235 (531)
                      ..+++|+|+++.+.+    |+.++++++|++|+|++ |.+.+ .++..++++++|++|+|++|...+.            
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~------------  116 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGA------------  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEE------------
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhcccccccc------------
Confidence            358888888887765    56777788888888876 44443 2444466666677776666654221            


Q ss_pred             EEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCC-cEEEeccccch
Q 009616          236 ILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL-EDLSIISLETL  312 (531)
Q Consensus       236 ~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L-~~L~L~~c~~l  312 (531)
                              .+......++|+.+++++|.  ...|..++.++.|+.+++++|.+++. ++..+..+..+ +.+.++.+...
T Consensus       117 --------~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~-ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         117 --------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             --------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEE
T ss_pred             --------ccccccchhhhcccccccccccccCchhhccCcccceeeccccccccc-ccccccccccccccccccccccc
Confidence                    11122345677777777776  55677899999999999999998864 34445556655 77888775321


Q ss_pred             hHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhcccc
Q 009616          313 ERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQI  392 (531)
Q Consensus       313 ~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L  392 (531)
                      .........+.         ...+.+...+     . .+.+|...+.+++++.++++. +...+.    + ..+..+++|
T Consensus       188 ~~~~~~~~~l~---------~~~l~l~~~~-----~-~~~~~~~~~~~~~l~~l~~~~-~~l~~~----~-~~~~~~~~L  246 (313)
T d1ogqa_         188 GKIPPTFANLN---------LAFVDLSRNM-----L-EGDASVLFGSDKNTQKIHLAK-NSLAFD----L-GKVGLSKNL  246 (313)
T ss_dssp             EECCGGGGGCC---------CSEEECCSSE-----E-EECCGGGCCTTSCCSEEECCS-SEECCB----G-GGCCCCTTC
T ss_pred             ccccccccccc---------cccccccccc-----c-ccccccccccccccccccccc-cccccc----c-ccccccccc
Confidence            11000011110         1112111111     1 233466667788999999974 322221    1 124667899


Q ss_pred             ceeEEEeeeeeeeeeeccccccCCCCCCCcccceEEEEEeeeccCC
Q 009616          393 GELHLSLNYKQVLFNIDEFRSCHPSLPLQVESLSLFMESFSLYMDV  438 (531)
Q Consensus       393 ~~L~L~~~~~~~~~~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  438 (531)
                      +.|+++.|...+.  +|+      .+..+++|++|+|+.|...|..
T Consensus       247 ~~L~Ls~N~l~g~--iP~------~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         247 NGLDLRNNRIYGT--LPQ------GLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             CEEECCSSCCEEC--CCG------GGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccCccCeeccc--CCh------HHhCCCCCCEEECcCCcccccC
Confidence            9999998877765  783      5666789999999988666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.4e-12  Score=118.27  Aligned_cols=163  Identities=24%  Similarity=0.256  Sum_probs=117.7

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      ..+++|++..    .....++ .+..+++|++|+|++|.+.+.+.++++++|++|++++|.+++  ++. +..+++|+.|
T Consensus        46 ~~L~~L~l~~----~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQIIANN----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEECTT----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCccEEECcC----CCCCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccc
Confidence            3788888764    2223343 366789999999999988874456789999999999998854  333 6788999999


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (531)
                      ++.+|.....-.+.++++|+.+++++|. ... .....+++|+.+++++|.......+.++++|+.|++++|.+++  ++
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~--l~  194 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR  194 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccCCCCCCEEECCCCCCCC--Ch
Confidence            9988876443345567888888888776 222 1233578888888888872222347788888888888888874  33


Q ss_pred             hhhcCCCCCcEEEecc
Q 009616          293 PLISKFPLLEDLSIIS  308 (531)
Q Consensus       293 ~~l~~~~~L~~L~L~~  308 (531)
                       .+.++++|+.|+|++
T Consensus       195 -~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 -ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCSEEEEEE
T ss_pred             -hhcCCCCCCEEEccC
Confidence             367788888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.3e-12  Score=117.38  Aligned_cols=159  Identities=19%  Similarity=0.235  Sum_probs=84.1

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .++++|++..  .  ....++ .+..+++|++|++++|.+.+.+.++++++|++|++++|.+..  ++. +++++.|+.|
T Consensus        40 ~~l~~L~l~~--~--~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQADR--L--GIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEECTT--S--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEE
T ss_pred             cCCCEEECCC--C--CCCCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccc--ccc-cccccccccc
Confidence            4677777654  1  122232 355667777777777776664446667777777777766522  111 4566777777


Q ss_pred             EeeecCCcceeeccccccccEEEEEeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFH  292 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  292 (531)
                      ++++|.......+.++++|+.|++++|. ..++. ...+++|+.|++.+|.......++++++|+.|++++|.+++  ++
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~--i~  188 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--IS  188 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhccccc-ccccccccccccccccccCCccccCCCCCCEEECCCCCCCC--Cc
Confidence            7766655443344455666666666554 11111 12345555555555541111134555555555555555543  11


Q ss_pred             hhhcCCCCCcEE
Q 009616          293 PLISKFPLLEDL  304 (531)
Q Consensus       293 ~~l~~~~~L~~L  304 (531)
                       .++++++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             23445555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.6e-12  Score=119.43  Aligned_cols=166  Identities=17%  Similarity=0.189  Sum_probs=126.3

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      .++++|++..    .....++ .+..+++|++|++++|.+.+...+..+++|+++++++|.++.  ++. ++.++.|+.+
T Consensus        41 ~~L~~L~l~~----~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLSAFG----TGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEECTT----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEE
T ss_pred             CCcCEEECCC----CCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccc
Confidence            5899998875    2234554 577899999999999998885568899999999999987743  332 6789999999


Q ss_pred             EeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhh
Q 009616          214 SFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHP  293 (531)
Q Consensus       214 ~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  293 (531)
                      .+++|.......+...+.++.+.++.+..........+++|+.|.+++|.......++++++|+.|++++|.+++  ++.
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~--l~~  190 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP  190 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCC--Chh
Confidence            999887765555556688889988877511111234678999999999883333458899999999999998875  222


Q ss_pred             hhcCCCCCcEEEecccc
Q 009616          294 LISKFPLLEDLSIISLE  310 (531)
Q Consensus       294 ~l~~~~~L~~L~L~~c~  310 (531)
                       ++++++|+.|+|++|.
T Consensus       191 -l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             -GGGCTTCCEEECTTSC
T ss_pred             -hcCCCCCCEEECcCCc
Confidence             6788999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=2.2e-12  Score=115.82  Aligned_cols=146  Identities=16%  Similarity=0.146  Sum_probs=117.3

Q ss_pred             CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEE
Q 009616          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~  238 (531)
                      .+.++++|++++|.+....++..+++|++|++++|.+++  ++. ++++++|++|++++|.......+.++++|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC--ccc-ccCCccccccccccccccccccccccccccccccc
Confidence            467899999999998876678889999999999998854  222 78999999999999976554457788999999999


Q ss_pred             eeccccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          239 FTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       239 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +|..........+++|+.|++++|.......+..+++|+.|++.+|.+++-  . .++++++|+.|++++|.
T Consensus       115 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l--~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         115 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL--K-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCC--c-cccCCCCCCEEECCCCC
Confidence            887111122336899999999999833334688999999999999999852  2 36789999999999974

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=3.1e-12  Score=117.46  Aligned_cols=146  Identities=17%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             cCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEE
Q 009616          158 FSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLIL  237 (531)
Q Consensus       158 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l  237 (531)
                      ..+.+|+.|++.+|.+....++..+++|++|++++|.+.+  +.. +..+++|+.+++.+|....--.+.++++|+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~--~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeec--ccc-cccccccccccccccccccccccccccccccccc
Confidence            4568999999999998875678899999999999998844  222 6889999999999886543333667899999999


Q ss_pred             Eeec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          238 RFTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       238 ~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +++. ..... ....+.++.+.++++.......+..+++|+.|++.++.+++.   ..+.++++|+.|+|++|.
T Consensus       115 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC
T ss_pred             ccccccccch-hccccchhhhhchhhhhchhhhhccccccccccccccccccc---hhhcccccceecccCCCc
Confidence            8876 22111 235678888888887733344577888999999988887742   126788999999998863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=2.7e-12  Score=123.41  Aligned_cols=242  Identities=15%  Similarity=0.100  Sum_probs=117.6

Q ss_pred             CCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccc
Q 009616          135 GVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLE  211 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le  211 (531)
                      +++.|+|+.    .....+|. ++.++++|++|++++|.+..  +..+.++++|++|++++|.+..  ++.  ..++.++
T Consensus        32 ~l~~L~Ls~----N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~~--~~~~~l~  103 (305)
T d1xkua_          32 DTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQ  103 (305)
T ss_dssp             TCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCC
T ss_pred             CCCEEECcC----CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Ccc--chhhhhh
Confidence            455555443    12334443 33445555555555555444  3334455555555555554421  111  1234444


Q ss_pred             eEEeeecCCcce--eeccccccccEEEEEeeccc----cceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCC
Q 009616          212 DLSFFYCFGLKR--LRISEAHKLKSLILRFTYQE----LESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       212 ~L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~~~----l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      .|.+.++.....  ........+..++...+...    .......+++|+.+++++|. ...+  ...+++|+.|+++++
T Consensus       104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLPPSLTELHLDGN  181 (305)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SSCCTTCSEEECTTS
T ss_pred             hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC--cccCCccCEEECCCC
Confidence            444444332111  01112234444444443300    11112245778888888876 3332  234678888888887


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCc
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPL  364 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~  364 (531)
                      ..+.. ....+.+++.++.|++++|.. ..       +..-.+.++++|+.+.++.++++       .+|..+.++++|+
T Consensus       182 ~~~~~-~~~~~~~~~~l~~L~~s~n~l-~~-------~~~~~~~~l~~L~~L~L~~N~L~-------~lp~~l~~l~~L~  245 (305)
T d1xkua_         182 KITKV-DAASLKGLNNLAKLGLSFNSI-SA-------VDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQ  245 (305)
T ss_dssp             CCCEE-CTGGGTTCTTCCEEECCSSCC-CE-------ECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCC
T ss_pred             cCCCC-ChhHhhccccccccccccccc-cc-------cccccccccccceeeeccccccc-------ccccccccccCCC
Confidence            77743 344567778888888887532 11       11111223344444444444432       1244455677888


Q ss_pred             EEEEEeeccCChhhhhhH--HHHHhhccccceeEEEeeeee
Q 009616          365 NVLFSNFGDIDTHWYLNL--MEFIGAFNQIGELHLSLNYKQ  403 (531)
Q Consensus       365 ~L~l~~~~~~~~~~~~~l--~~~l~~l~~L~~L~L~~~~~~  403 (531)
                      .|+++. +.+.......+  .......++|+.|.|..|...
T Consensus       246 ~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         246 VVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EEECCC-CccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            888874 44433211110  122345677888887766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-12  Score=121.13  Aligned_cols=154  Identities=21%  Similarity=0.106  Sum_probs=78.5

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCccee-e
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRL-R  225 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l-~  225 (531)
                      ....+|..+.  ++|++|+|++|.+..  +..+.++++|++|+|++|.++.  ++. .+.+++|++|+|++|...... .
T Consensus        21 ~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~   95 (266)
T d1p9ag_          21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLL   95 (266)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-ccccccccccccccccccccccc
Confidence            3456666553  467777777777766  3446677777777777776632  221 345666777777666542221 1


Q ss_pred             ccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-c-cceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCC
Q 009616          226 ISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-V-PRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLL  301 (531)
Q Consensus       226 ~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L  301 (531)
                      +.++++|+.|+++++. ..+. .....+++++.|.+++|. . ..+..+..+++|+.+++++|.++. .....+..+++|
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L  174 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL  174 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTC
T ss_pred             cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc-cCcccccccccc
Confidence            2344556666655554 1111 111234455555555554 1 112223444555555555555442 222334444455


Q ss_pred             cEEEecc
Q 009616          302 EDLSIIS  308 (531)
Q Consensus       302 ~~L~L~~  308 (531)
                      ++|+|++
T Consensus       175 ~~L~Ls~  181 (266)
T d1p9ag_         175 DTLLLQE  181 (266)
T ss_dssp             CEEECCS
T ss_pred             ceeeccc
Confidence            5555444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-12  Score=123.23  Aligned_cols=169  Identities=17%  Similarity=0.074  Sum_probs=126.7

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccce
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLED  212 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~  212 (531)
                      +++++|+|+.    .....+|. .+.++++|++|+|++|.+...+.++.+++|++|+|++|.+..  ++..+..+++|+.
T Consensus        31 ~~l~~L~Ls~----N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSE----NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTT----SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCE
T ss_pred             cCCCEEECcC----CcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            4799999875    33445664 466789999999999988774445789999999999998843  2334678899999


Q ss_pred             EEeeecCCcce--eeccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCC
Q 009616          213 LSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHF  286 (531)
Q Consensus       213 L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~  286 (531)
                      |++++|.....  .....+++++.|++.+|. ..++ .....+++|+.+++++|.  ...+..++.+++|+.|+|++|.+
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            99998876432  223457899999999886 3333 223467899999999998  33344578899999999999998


Q ss_pred             ChhhhhhhhcCCCCCcEEEecccc
Q 009616          287 NDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       287 ~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      + . ++..+..+++|+.|+|++++
T Consensus       185 ~-~-lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         185 Y-T-IPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             C-C-CCTTTTTTCCCSEEECCSCC
T ss_pred             c-c-cChhHCCCCCCCEEEecCCC
Confidence            8 3 44445578899999999854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=122.61  Aligned_cols=205  Identities=16%  Similarity=0.078  Sum_probs=138.7

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      .....+|..+.  +++++|+|++|++.. + ..+.++++|++|+++++.+... ......+++.++.+....+..+..+.
T Consensus        21 ~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          21 QGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             SCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            34567777654  578999999999987 4 4578999999999999887432 22335678899998887776665543


Q ss_pred             ---ccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc-ccc-eeeccCCCCccEEEEeCCCCChhhhhhhhcCC
Q 009616          226 ---ISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR-VPR-LLDVAECPHLRKLVLFLPHFNDQEFHPLISKF  298 (531)
Q Consensus       226 ---~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  298 (531)
                         +.++++|++|++++|. ..+. ......++|+.+++++|. ..+ +..+..+++|+.|++++|.++. ..+..+.++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTC
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cchhhhccc
Confidence               4567889999998886 2222 223356788999998887 333 3457788889999998888873 445667788


Q ss_pred             CCCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEe
Q 009616          299 PLLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSN  370 (531)
Q Consensus       299 ~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~  370 (531)
                      ++|+.++++++.....        ..-.+.++++++.++++.+++.      ...+..+.++++|+++++++
T Consensus       177 ~~L~~l~l~~N~l~~i--------~~~~f~~l~~L~~L~l~~N~i~------~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHV--------HPHAFRDLGRLMTLYLFANNLS------ALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCS------CCCHHHHTTCTTCCEEECCS
T ss_pred             cccchhhhhhcccccc--------ChhHhhhhhhcccccccccccc------cccccccccccccCEEEecC
Confidence            8899998887642211        0111233445555555554442      12235566788888888874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=5.9e-12  Score=114.01  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=103.2

Q ss_pred             CCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEE
Q 009616          159 SAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILR  238 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~  238 (531)
                      .+.+|++|++++|.+....++..+++|++|+|++|.+++  ++. ++.+++|++|++++|....-..+.++++|+.|+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCccccccccccccccccccccccccccccccc
Confidence            357899999999998876678889999999999998854  232 57899999999998864332235567888888888


Q ss_pred             eec-cccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccc
Q 009616          239 FTY-QELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       239 ~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      +|. ..+. ....+++|+.++++++.......+..+++|+.++++++.+++  +.. +.++++|+.|+|++|
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSS
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccc--ccc-ccCCCCCCEEECCCC
Confidence            776 2222 123567778888777763333356677778888887777764  222 567777777777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.3e-11  Score=115.46  Aligned_cols=173  Identities=16%  Similarity=0.088  Sum_probs=123.8

Q ss_pred             cCCcEEEEeeecCCCccccCCc-cccCCCCccEEEecCCcCCC--CcCCCCCCccCEEEeeeEEechHhHHHHHhCCccc
Q 009616          134 NGVKELDFEVITDKNSVNALPQ-TIFSAKLLTSLKLFGCKLEQ--PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVL  210 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~L  210 (531)
                      .++++|+|+.    .....+|. .+.++++|++|+++++.+..  +.....++.++.+....+.......+..++++++|
T Consensus        32 ~~~~~L~Ls~----N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcC----CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            4688998875    23456665 46788999999999998876  45556788888887754332111123346788999


Q ss_pred             ceEEeeecCCcce--eeccccccccEEEEEeec-cccc-eeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCC
Q 009616          211 EDLSFFYCFGLKR--LRISEAHKLKSLILRFTY-QELE-SVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLP  284 (531)
Q Consensus       211 e~L~L~~c~~~~~--l~~~~l~~L~~L~l~~~~-~~l~-~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~  284 (531)
                      ++|++++|.....  .....+++|+.+++++|. ..++ ......++|+.|++++|.  ...+..+.++++|+.+++++|
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            9999998875322  223356789999999886 3333 223367889999999988  333456788999999999999


Q ss_pred             CCChhhhhhhhcCCCCCcEEEeccccc
Q 009616          285 HFNDQEFHPLISKFPLLEDLSIISLET  311 (531)
Q Consensus       285 ~~~~~~~~~~l~~~~~L~~L~L~~c~~  311 (531)
                      .+++ ..+..+.++++|+.|+++++..
T Consensus       188 ~l~~-i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         188 RVAH-VHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             CCCE-ECTTTTTTCTTCCEEECCSSCC
T ss_pred             cccc-cChhHhhhhhhccccccccccc
Confidence            8884 4456688889999999988753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-11  Score=124.66  Aligned_cols=342  Identities=15%  Similarity=0.079  Sum_probs=191.0

Q ss_pred             ccceEEEEEeeccccCCchhHHHHHHHHHHcCCcEEEEeeecCCC---ccccCCccccCCCCccEEEecCCcCCC-----
Q 009616          104 PMQKLRISVSLLEVKESSPLFDKWVELAMENGVKELDFEVITDKN---SVNALPQTIFSAKLLTSLKLFGCKLEQ-----  175 (531)
Q Consensus       104 ~l~~l~L~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-----  175 (531)
                      .++++.++....    ....+..++  ...++++.|+|..  +..   ....++..+..+++|++|+|++|.+..     
T Consensus         3 ~l~~ld~~~~~i----~~~~~~~l~--~~l~~l~~L~L~~--~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEEL----SDARWAELL--PLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCC----CHHHHHHHH--HHHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCcC----ChHHHHHHH--HhCCCCCEEEeCC--CCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            355666653321    123334433  3347999999986  221   112445556788999999999998753     


Q ss_pred             -CcCC-CCCCccCEEEeeeEEechHh---HHHHHhCCcccceEEeeecCCcc------------------eee-------
Q 009616          176 -PSHC-ANLQSLKKLSLDEVYVNDQM---VQSLVRECRVLEDLSFFYCFGLK------------------RLR-------  225 (531)
Q Consensus       176 -~~~~-~~l~~L~~L~L~~~~~~~~~---l~~~l~~~~~Le~L~L~~c~~~~------------------~l~-------  225 (531)
                       ...+ ...++|++|+|++|.+++..   +...+..+++|++|++++|....                  ...       
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence             1111 13458999999999986544   44556789999999999886410                  000       


Q ss_pred             ----------ccccccccEEEEEeecc---ccce----eeeeCCcccEEEecccc-cc-----ceeeccCCCCccEEEEe
Q 009616          226 ----------ISEAHKLKSLILRFTYQ---ELES----VEIAVPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLF  282 (531)
Q Consensus       226 ----------~~~l~~L~~L~l~~~~~---~l~~----~~~~~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L~  282 (531)
                                +...+.++.+.++.+..   ....    +...-.....+....+. ..     ....+...+.++.+.+.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence                      00124566666665540   0000    01112234455555554 11     11123456777888887


Q ss_pred             CCCCChh----hhhhhhcCCCCCcEEEeccccchhH-------HHhcCcccceecccccc----ch----hhhcccCCCc
Q 009616          283 LPHFNDQ----EFHPLISKFPLLEDLSIISLETLER-------IMISSNRLMHLEVYNCS----GL----NRINVDAPNL  343 (531)
Q Consensus       283 ~~~~~~~----~~~~~l~~~~~L~~L~L~~c~~l~~-------l~~~~~~L~~L~l~~c~----~L----~~l~~~~~nL  343 (531)
                      .+.+...    .........+.++.|++++|.....       .....+.++.+.+.++.    .+    +.+......|
T Consensus       235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence            7766543    2233445567788888887753111       11123556666665432    01    1122233456


Q ss_pred             ceeEeecCCcC--------ceecCCCCCcEEEEEeeccCChhhhhhHHHHH-hhccccceeEEEeeeeeeee--eecccc
Q 009616          344 VSFDFEDNPIP--------IVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFI-GAFNQIGELHLSLNYKQVLF--NIDEFR  412 (531)
Q Consensus       344 ~sl~~~~~~~p--------~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l-~~l~~L~~L~L~~~~~~~~~--~ip~~~  412 (531)
                      +.+.+.+..+.        .......+|++|++++ +.+.......+...+ .+.+.|+.|+++.+......  .+++  
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~--  391 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--  391 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheee-ecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH--
Confidence            66666555442        1122467899999985 444443333333334 35677999999877654321  0221  


Q ss_pred             ccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHHhHhh-hccccceeecCC
Q 009616          413 SCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLDDLFW-IFYPKNLCLSPE  464 (531)
Q Consensus       413 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~~L~~-~~~l~~l~l~~~  464 (531)
                          .+...++|++|+|+.|.    ........+...+-. .+.+++|.+...
T Consensus       392 ----~l~~~~~L~~L~Ls~N~----i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         392 ----TLLANHSLRELDLSNNC----LGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             ----HHHHCCCCCEEECCSSS----CCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             ----HHhcCCCCCEEECCCCc----CCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence                13345789999999883    344445556665543 335889998654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=5.2e-11  Score=114.16  Aligned_cols=254  Identities=13%  Similarity=0.041  Sum_probs=164.2

Q ss_pred             CccccCCccccCCCCccEEEecCCcCCC-C-cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          148 NSVNALPQTIFSAKLLTSLKLFGCKLEQ-P-SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       148 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      .....+|..+.  +++++|+|++|++.. + ..+.++++|++|++++|.+.. ..+..+.+++.|++|++++|.. ..++
T Consensus        20 ~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~~~~f~~l~~L~~L~l~~n~l-~~l~   95 (305)
T d1xkua_          20 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQL-KELP   95 (305)
T ss_dssp             SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCC-SBCC
T ss_pred             CCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cchhhhhCCCccCEecccCCcc-CcCc
Confidence            34677888764  689999999999988 4 467899999999999998843 1234478899999999999863 4444


Q ss_pred             ccccccccEEEEEeec-cccceee-eeCCcccEEEecccc----ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCC
Q 009616          226 ISEAHKLKSLILRFTY-QELESVE-IAVPSLQQLELSFSR----VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFP  299 (531)
Q Consensus       226 ~~~l~~L~~L~l~~~~-~~l~~~~-~~~~~L~~L~l~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  299 (531)
                      ....+.|+.|++..+. ..+.... ...+.++.+....+.    ......+..+++|+.+++.++.++.  ++.  ..++
T Consensus        96 ~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~--~~~~  171 (305)
T d1xkua_          96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ--GLPP  171 (305)
T ss_dssp             SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCS--SCCT
T ss_pred             cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc--cCc--ccCC
Confidence            4445788999888776 2222222 245667778777765    2233457788899999998888763  221  2367


Q ss_pred             CCcEEEeccccchhHHHhcCcccceeccccccchhhhcccCCCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhh
Q 009616          300 LLEDLSIISLETLERIMISSNRLMHLEVYNCSGLNRINVDAPNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWY  379 (531)
Q Consensus       300 ~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~  379 (531)
                      +|+.|++.++........        .+..++.++.+.++.+.+.++      .+..+.++++|++|++++ +.+..   
T Consensus       172 ~L~~L~l~~n~~~~~~~~--------~~~~~~~l~~L~~s~n~l~~~------~~~~~~~l~~L~~L~L~~-N~L~~---  233 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAA--------SLKGLNNLAKLGLSFNSISAV------DNGSLANTPHLRELHLNN-NKLVK---  233 (305)
T ss_dssp             TCSEEECTTSCCCEECTG--------GGTTCTTCCEEECCSSCCCEE------CTTTGGGSTTCCEEECCS-SCCSS---
T ss_pred             ccCEEECCCCcCCCCChh--------Hhhcccccccccccccccccc------ccccccccccceeeeccc-ccccc---
Confidence            899999988643211110        112233333443433333222      124455688999999985 33332   


Q ss_pred             hhHHHHHhhccccceeEEEeeeeeeeeeeccccccC-CCCCCCcccceEEEEEe
Q 009616          380 LNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFRSCH-PSLPLQVESLSLFMESF  432 (531)
Q Consensus       380 ~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~~-~~~~~~~~L~~L~L~~~  432 (531)
                        ++..+.++++|+.|+++.|..+  . |+...+.. .......+|+.|.|++|
T Consensus       234 --lp~~l~~l~~L~~L~Ls~N~i~--~-i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         234 --VPGGLADHKYIQVVYLHNNNIS--A-IGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             --CCTTTTTCSSCCEEECCSSCCC--C-CCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             --cccccccccCCCEEECCCCccC--c-cChhhccCcchhcccCCCCEEECCCC
Confidence              2234677899999988865433  2 55433321 12345678888999887

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.6e-11  Score=76.07  Aligned_cols=36  Identities=17%  Similarity=0.395  Sum_probs=33.4

Q ss_pred             CCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhc
Q 009616           10 ISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQT   45 (531)
Q Consensus        10 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~   45 (531)
                      ++.||+||+.+||+|||.+|+++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=1.2e-09  Score=106.10  Aligned_cols=260  Identities=19%  Similarity=0.174  Sum_probs=143.6

Q ss_pred             HHcCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCC-cc
Q 009616          132 MENGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVREC-RV  209 (531)
Q Consensus       132 ~~~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~-~~  209 (531)
                      ...++++|+|+.    .....+|..   .++|++|+|++|++.. |.   .+.+|+.|++++|.++.  +    ..+ +.
T Consensus        36 ~~~~l~~LdLs~----~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~--l----~~lp~~   99 (353)
T d1jl5a_          36 LDRQAHELELNN----LGLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA--L----SDLPPL   99 (353)
T ss_dssp             HHHTCSEEECTT----SCCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC--C----CSCCTT
T ss_pred             HHcCCCEEEeCC----CCCCCCCCC---CCCCCEEECCCCCCccccc---chhhhhhhhhhhcccch--h----hhhccc
Confidence            345899999875    234567864   4689999999998886 43   25689999999887742  2    223 46


Q ss_pred             cceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEeccccccceeeccCCCCccEEEEeCCCCChh
Q 009616          210 LEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQ  289 (531)
Q Consensus       210 Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  289 (531)
                      |++|++++|....-.....+++|+.|+++++.  ........+.+..+.+..+.......++.++.++.+.+..+.....
T Consensus       100 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccccccccccchhhhccceeecccccc--ccccccccccccchhhccccccccccccccccceeccccccccccc
Confidence            99999998875432234567899999998775  2222222345556665555433334455666666666654443210


Q ss_pred             ------------------hhhhhhcCCCCCcEEEeccccchhHHHhcCcccceeccccc-----c----chhhhcccC--
Q 009616          290 ------------------EFHPLISKFPLLEDLSIISLETLERIMISSNRLMHLEVYNC-----S----GLNRINVDA--  340 (531)
Q Consensus       290 ------------------~~~~~l~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c-----~----~L~~l~~~~--  340 (531)
                                        .++ ....++.|+.+.++++.... +.....++..+.+...     .    .+.......  
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  255 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI  255 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence                              011 13456677777777653211 1111122222222211     0    011111110  


Q ss_pred             --------CCcceeEeecCCcCceecCCCCCcEEEEEeeccCChhhhhhHHHHHhhccccceeEEEeeeeeeeeeecccc
Q 009616          341 --------PNLVSFDFEDNPIPIVSTNAPCPLNVLFSNFGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLFNIDEFR  412 (531)
Q Consensus       341 --------~nL~sl~~~~~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~  412 (531)
                              .........+..++.....+++|++|++++ +.+..        ++..+++|+.|+++.|..+  . +|   
T Consensus       256 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~--------lp~~~~~L~~L~L~~N~L~--~-l~---  320 (353)
T d1jl5a_         256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIE--------LPALPPRLERLIASFNHLA--E-VP---  320 (353)
T ss_dssp             CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSC--------CCCCCTTCCEEECCSSCCS--C-CC---
T ss_pred             ccccccccchhcccccccCccccccccCCCCCEEECCC-CccCc--------cccccCCCCEEECCCCcCC--c-cc---
Confidence                    011112222222222223367899999985 33332        2245788999988766543  2 55   


Q ss_pred             ccCCCCCCCcccceEEEEEe
Q 009616          413 SCHPSLPLQVESLSLFMESF  432 (531)
Q Consensus       413 ~~~~~~~~~~~L~~L~L~~~  432 (531)
                          .  .+.+|++|+++.|
T Consensus       321 ----~--~~~~L~~L~L~~N  334 (353)
T d1jl5a_         321 ----E--LPQNLKQLHVEYN  334 (353)
T ss_dssp             ----C--CCTTCCEEECCSS
T ss_pred             ----c--ccCCCCEEECcCC
Confidence                1  2357899999887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.2e-10  Score=95.52  Aligned_cols=117  Identities=21%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             cEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccc
Q 009616          164 TSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQE  243 (531)
Q Consensus       164 ~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~  243 (531)
                      ++|+|++|.++..+.+..+++|++|++++|.+..  ++..++.+++|+.|++++|....--.+.+               
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~---------------   63 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVAN---------------   63 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTT---------------
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCcccc---------------
Confidence            4677777777664456677777777777777642  33335667777777777665322111223               


Q ss_pred             cceeeeeCCcccEEEecccc-ccc--eeeccCCCCccEEEEeCCCCChh--hhhhhhcCCCCCcEE
Q 009616          244 LESVEIAVPSLQQLELSFSR-VPR--LLDVAECPHLRKLVLFLPHFNDQ--EFHPLISKFPLLEDL  304 (531)
Q Consensus       244 l~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~~~~L~~L  304 (531)
                             +++|++|++++|. ...  ...++.+++|+.|++++|.++..  ....+...+|+|+.|
T Consensus        64 -------l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          64 -------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -------ccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                   3344444444444 111  12456667777777777766532  223445556776665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.5e-11  Score=102.11  Aligned_cols=128  Identities=19%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             ccCCCCccEEEecCCcCCC-CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEE
Q 009616          157 IFSAKLLTSLKLFGCKLEQ-PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSL  235 (531)
Q Consensus       157 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L  235 (531)
                      +.++.+|++|+|++|++.. +.....+++|++|+|++|.+..  ++. ++.+++|++|++++|... .+..         
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i~-~l~~---------   80 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRIC-RIGE---------   80 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCCC-EECS---------
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhccccccc-CCCc---------
Confidence            3466778888888888776 4444567778888887776632  111 455666666666655432 1110         


Q ss_pred             EEEeeccccceeeeeCCcccEEEecccc-ccce--eeccCCCCccEEEEeCCCCChhh--hhhhhcCCCCCcEEEec
Q 009616          236 ILRFTYQELESVEIAVPSLQQLELSFSR-VPRL--LDVAECPHLRKLVLFLPHFNDQE--FHPLISKFPLLEDLSII  307 (531)
Q Consensus       236 ~l~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~~~~L~~L~L~  307 (531)
                                .+...+++|+.|++++|. ...+  ..+..+++|+.|++++|.++...  -...+..+|+|+.|+-.
T Consensus        81 ----------~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          81 ----------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ----------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ----------cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence                      111234555555555555 1111  24566777777777777665421  12345667777777644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.97  E-value=1.4e-11  Score=110.12  Aligned_cols=102  Identities=18%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             CcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEe
Q 009616          136 VKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSF  215 (531)
Q Consensus       136 l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L  215 (531)
                      ++++++..  .......+|.++..+++|++|+|++|.+...+++.++++|++|+|++|.++.  ++.+...++.|++|++
T Consensus        25 ~~~~~l~~--~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHG--MIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCB--CCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEEC
T ss_pred             cceeeeec--ccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccc
Confidence            55666554  3334456677788889999999999988774567788999999999998843  3334445677888888


Q ss_pred             eecCCcceeeccccccccEEEEEeec
Q 009616          216 FYCFGLKRLRISEAHKLKSLILRFTY  241 (531)
Q Consensus       216 ~~c~~~~~l~~~~l~~L~~L~l~~~~  241 (531)
                      ++|....--.+.++++|+.|++++|.
T Consensus       101 ~~N~i~~l~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_         101 SYNQIASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             SEEECCCHHHHHHHHHSSEEEESEEE
T ss_pred             ccccccccccccccccccccccccch
Confidence            88753221123345666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=4.5e-10  Score=109.43  Aligned_cols=60  Identities=10%  Similarity=0.042  Sum_probs=32.8

Q ss_pred             CCcccEEEecccc-cc-----ceeeccCCCCccEEEEeCCCCChhh----hhhhhcCCCCCcEEEecccc
Q 009616          251 VPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLFLPHFNDQE----FHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L~~~~~~~~~----~~~~l~~~~~L~~L~L~~c~  310 (531)
                      .+.|+.+.++++. ..     ....+..++.|+.|+++++.++.+.    +...+..+++|+.|+|++|.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence            4556666665554 11     1112345566777777666666532    23345566677777776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.6e-09  Score=99.70  Aligned_cols=90  Identities=14%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             cccCCccccCCCCccEEEecCCcCCC-Cc-CCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeec-
Q 009616          150 VNALPQTIFSAKLLTSLKLFGCKLEQ-PS-HCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRI-  226 (531)
Q Consensus       150 ~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~-  226 (531)
                      ...+|..+.  +++++|+|++|.+.. +. .+.++++|++|++++|.+....-...+.+++.++++.+..+..+..... 
T Consensus        20 l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          20 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             CSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            345665543  467777777777765 33 4566777777777776542211111244566777776666554444332 


Q ss_pred             --cccccccEEEEEeec
Q 009616          227 --SEAHKLKSLILRFTY  241 (531)
Q Consensus       227 --~~l~~L~~L~l~~~~  241 (531)
                        .++++|+.|+++++.
T Consensus        98 ~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             SEECCTTCCEEEEESCC
T ss_pred             cccccccccccccchhh
Confidence              244556666665553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.8e-10  Score=94.51  Aligned_cols=101  Identities=13%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             CCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEE
Q 009616          135 GVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLS  214 (531)
Q Consensus       135 ~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~  214 (531)
                      ++++|+|+.    .....+|.....+++|++|+|++|.+...+++..+++|++|++++|.+..- .+.++..+++|++|+
T Consensus        19 ~lr~L~L~~----n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          19 RDRELDLRG----YKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI   93 (162)
T ss_dssp             SCEEEECTT----SCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred             cCcEEECCC----CCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCC-Cccccccccccccce
Confidence            578888875    344566765567899999999999987745678899999999999988431 123456799999999


Q ss_pred             eeecCCcc--ee-eccccccccEEEEEee
Q 009616          215 FFYCFGLK--RL-RISEAHKLKSLILRFT  240 (531)
Q Consensus       215 L~~c~~~~--~l-~~~~l~~L~~L~l~~~  240 (531)
                      +++|....  .+ .+.++++|+.|++++|
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             eccccccccccccccccccccchhhcCCC
Confidence            99986422  11 2334455555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.1e-09  Score=95.24  Aligned_cols=171  Identities=11%  Similarity=0.032  Sum_probs=111.8

Q ss_pred             cCCcEEEEeeecCCCccccCCcc-ccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeE-EechHhHHHHHhCCc
Q 009616          134 NGVKELDFEVITDKNSVNALPQT-IFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEV-YVNDQMVQSLVRECR  208 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~-~~~~~~l~~~l~~~~  208 (531)
                      +++++|+++.  +  ....+|.. +.++++|++|++++|.+..   +..+.++++++++.+..+ .+.. .....+.+++
T Consensus        29 ~~l~~L~Ls~--n--~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVL--T--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEES--C--CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCT
T ss_pred             CCCCEEECcC--C--cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccccc
Confidence            5899999986  2  34567764 5679999999999998765   345678999999998754 3321 1233467899


Q ss_pred             ccceEEeeecCCcceeeccccccccEEEEEeec-cccceee----ee-CCcccEEEecccc-ccceeeccCCCCccEEE-
Q 009616          209 VLEDLSFFYCFGLKRLRISEAHKLKSLILRFTY-QELESVE----IA-VPSLQQLELSFSR-VPRLLDVAECPHLRKLV-  280 (531)
Q Consensus       209 ~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~-~~l~~~~----~~-~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~-  280 (531)
                      +|++|++.+|..........+.+++.+...... ..+..+.    .. ...++.|++.++. ...+......++++.+. 
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEEC
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccc
Confidence            999999999865433333334555555544332 1222221    12 2478888988887 43333444556666654 


Q ss_pred             EeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          281 LFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       281 L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      +.++.++ ......+.++++|+.|+|+++.
T Consensus       184 l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         184 SDNNNLE-ELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TTCTTCC-CCCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccc-cccHHHhcCCCCCCEEECCCCc
Confidence            4666676 3344567889999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3e-09  Score=107.05  Aligned_cols=293  Identities=16%  Similarity=0.099  Sum_probs=169.7

Q ss_pred             CCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhH---HHHHhCCcccceEEeeecCCcce--eec-----c
Q 009616          161 KLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMV---QSLVRECRVLEDLSFFYCFGLKR--LRI-----S  227 (531)
Q Consensus       161 ~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l---~~~l~~~~~Le~L~L~~c~~~~~--l~~-----~  227 (531)
                      .+|++|+++++++++   ..-+..++++++|+|++|.+++..+   ...+..+++|++|+|++|.....  ..+     .
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            368999999999976   3334568999999999999865544   45578999999999998864211  011     1


Q ss_pred             ccccccEEEEEeec-c--ccc---eeeeeCCcccEEEecccc-ccce-----e---------------------------
Q 009616          228 EAHKLKSLILRFTY-Q--ELE---SVEIAVPSLQQLELSFSR-VPRL-----L---------------------------  268 (531)
Q Consensus       228 ~l~~L~~L~l~~~~-~--~l~---~~~~~~~~L~~L~l~~~~-~~~~-----~---------------------------  268 (531)
                      ...+|++|++++|. .  +..   .....+++|++|++++|. ....     .                           
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            22579999999986 1  111   122367899999999886 1100     0                           


Q ss_pred             --eccCCCCccEEEEeCCCCChhhh--------------------------------hhhhcCCCCCcEEEeccccchh-
Q 009616          269 --DVAECPHLRKLVLFLPHFNDQEF--------------------------------HPLISKFPLLEDLSIISLETLE-  313 (531)
Q Consensus       269 --~~~~~~~L~~L~L~~~~~~~~~~--------------------------------~~~l~~~~~L~~L~L~~c~~l~-  313 (531)
                        .+...+.++.+.+++........                                ...+...+.++.+.+.++.... 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence              01123455555555444332111                                1122233445555555443211 


Q ss_pred             -------HHHhcCcccceeccccccch-------hhhcccCCCcceeEeecCCcC----ce-----ecCCCCCcEEEEEe
Q 009616          314 -------RIMISSNRLMHLEVYNCSGL-------NRINVDAPNLVSFDFEDNPIP----IV-----STNAPCPLNVLFSN  370 (531)
Q Consensus       314 -------~l~~~~~~L~~L~l~~c~~L-------~~l~~~~~nL~sl~~~~~~~p----~~-----~~~~~~L~~L~l~~  370 (531)
                             ........++.+++.++.--       .......+.+..+.+.+..+.    ..     ......|+.++++.
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                   11111345666666554211       000112345555555555442    00     11245788888875


Q ss_pred             eccCChhhhhhHHHHHhhccccceeEEEeeeeeeee--eeccccccCCCCCCCcccceEEEEEeeeccCCCchhHHHHHH
Q 009616          371 FGDIDTHWYLNLMEFIGAFNQIGELHLSLNYKQVLF--NIDEFRSCHPSLPLQVESLSLFMESFSLYMDVVPSEYEILLD  448 (531)
Q Consensus       371 ~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~--~ip~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~  448 (531)
                       +.........+...+...++|+.|+|+.+.....+  .+++.+.     .....|++|+|+.|    +........+..
T Consensus       322 -~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~-----~~~~~L~~L~Ls~n----~i~~~~~~~l~~  391 (460)
T d1z7xw1         322 -CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG-----QPGSVLRVLWLADC----DVSDSSCSSLAA  391 (460)
T ss_dssp             -SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT-----STTCCCCEEECTTS----CCCHHHHHHHHH
T ss_pred             -cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh-----cccCCCCEEECCCC----CCChHHHHHHHH
Confidence             45555555566677788889999999876543321  0222111     12467899999887    344444566667


Q ss_pred             hHhhhccccceeecC
Q 009616          449 DLFWIFYPKNLCLSP  463 (531)
Q Consensus       449 ~L~~~~~l~~l~l~~  463 (531)
                      .+-.++.+++|.+..
T Consensus       392 ~l~~~~~L~~L~Ls~  406 (460)
T d1z7xw1         392 TLLANHSLRELDLSN  406 (460)
T ss_dssp             HHHHCCCCCEEECCS
T ss_pred             HHhcCCCCCEEECCC
Confidence            777778899988843

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.6e-09  Score=84.08  Aligned_cols=42  Identities=31%  Similarity=0.554  Sum_probs=38.5

Q ss_pred             CCCCCCccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            2 DETVDADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         2 ~~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      ++.-..|.|+.||+||+.+||+||+.+|+++++.|||+|+.+
T Consensus        11 ~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345567999999999999999999999999999999999975

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.73  E-value=4.6e-09  Score=93.02  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=21.2

Q ss_pred             eccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEeccc
Q 009616          269 DVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       269 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      .|.++++|+.|+|++|.++. ..+..+..+++|++|+|+++
T Consensus        97 ~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTC
T ss_pred             HHhCCCcccccccCCccccc-cCHHHhcCCccccccccccc
Confidence            35555555555555555552 23344455556666665553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=1.5e-08  Score=82.60  Aligned_cols=82  Identities=20%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             ccccccEEEEEeec-cccceeeeeCCcccEEEecccc-ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEE
Q 009616          228 EAHKLKSLILRFTY-QELESVEIAVPSLQQLELSFSR-VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLS  305 (531)
Q Consensus       228 ~l~~L~~L~l~~~~-~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~  305 (531)
                      ++++|++|++++|. ..++.....+++|+.|++++|. ... ..++.+++|+.|++++|.++.-.....+..+++|+.|+
T Consensus        18 ~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          18 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             cCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            34444444444443 2333223356778888888877 333 35889999999999999998533234567899999999


Q ss_pred             ecccc
Q 009616          306 IISLE  310 (531)
Q Consensus       306 L~~c~  310 (531)
                      ++++.
T Consensus        97 l~~N~  101 (124)
T d1dcea3          97 LQGNS  101 (124)
T ss_dssp             CTTSG
T ss_pred             CCCCc
Confidence            99864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.66  E-value=1.6e-09  Score=96.50  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=58.5

Q ss_pred             cCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccE
Q 009616          177 SHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQ  256 (531)
Q Consensus       177 ~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~  256 (531)
                      ..+..+++|++|+|++|.++.  ++. +..+++|+.|+|++|.. ..                    ++......++|+.
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i-~~--------------------i~~~~~~~~~L~~   97 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI-KK--------------------IENLDAVADTLEE   97 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE-CS--------------------CSSHHHHHHHCCE
T ss_pred             hHHhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc-cc--------------------ccccccccccccc
Confidence            345567777777777777742  221 45566777777766642 11                    1111112234555


Q ss_pred             EEeccccccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          257 LELSFSRVPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       257 L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      |++++|.......+..+++|+.|++++|.++.-.....+..+++|+.|+|++++
T Consensus        98 L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          98 LWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            555544411112345566666777766666542222335666777777777654

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=2.1e-09  Score=84.09  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=37.6

Q ss_pred             CccCCCCChHHHHHHhcCCChHHHHHHhhhhhhhhhhhccCC
Q 009616            7 ADHISDLPTFIIHHIMSFLSPKDVVRTGILSTTWRKFQTSFP   48 (531)
Q Consensus         7 ~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~lw~~~~   48 (531)
                      .|.|+.||+||+.+||+||+.+|++++++|||+|+++..+-+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~   44 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST   44 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
Confidence            588999999999999999999999999999999997654433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.62  E-value=1.7e-07  Score=90.46  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             cCCcEEEEeeecCCCccccCCccccCCCCccEEEecCCcCCCCcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceE
Q 009616          134 NGVKELDFEVITDKNSVNALPQTIFSAKLLTSLKLFGCKLEQPSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDL  213 (531)
Q Consensus       134 ~~l~~L~L~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L  213 (531)
                      +++++|+++.    .....+|..   ..+|+.|++++|.+...+.+  .+.|++|++++|.+..  ++. .+.+++|++|
T Consensus        58 ~~L~~L~Ls~----N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          58 PHLESLVASC----NSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK--LPE-LQNSSFLKII  125 (353)
T ss_dssp             TTCSEEECCS----SCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEE
T ss_pred             CCCCEEECCC----CCCcccccc---hhhhhhhhhhhcccchhhhh--cccccccccccccccc--ccc-hhhhccceee
Confidence            4789998865    334567764   35788889988877652111  2468899998888743  332 4678889999


Q ss_pred             EeeecCC
Q 009616          214 SFFYCFG  220 (531)
Q Consensus       214 ~L~~c~~  220 (531)
                      ++.+|..
T Consensus       126 ~l~~~~~  132 (353)
T d1jl5a_         126 DVDNNSL  132 (353)
T ss_dssp             ECCSSCC
T ss_pred             ccccccc
Confidence            8887754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.59  E-value=2.3e-08  Score=88.32  Aligned_cols=117  Identities=17%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             ccccCCccccCCCCccEEEecCCcCCC---CcCCCCCCccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceee
Q 009616          149 SVNALPQTIFSAKLLTSLKLFGCKLEQ---PSHCANLQSLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLR  225 (531)
Q Consensus       149 ~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~  225 (531)
                      ....+|..+.  +++++|+|++|.+..   +..++++++|++|+|++|.+... ....+...+.|++|+|++|... .+.
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l~-~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIK-EIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCC-EEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccccc-ccC
Confidence            4456666553  567777777777754   34456677777777777766321 2233455666666666666432 111


Q ss_pred             ccccccccEEEEEeeccccceeeeeCCcccEEEecccc--ccceeeccCCCCccEEEEeCCCCCh
Q 009616          226 ISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR--VPRLLDVAECPHLRKLVLFLPHFND  288 (531)
Q Consensus       226 ~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~  288 (531)
                                         +....++++|++|+|++|.  ...+..|..+++|++|+|++|.+..
T Consensus        95 -------------------~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          95 -------------------NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             -------------------SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             -------------------HHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence                               1112245666666666666  2223457788888888888887764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=5e-08  Score=94.53  Aligned_cols=37  Identities=14%  Similarity=0.121  Sum_probs=17.3

Q ss_pred             CCCCccEEEecCCcCCC------CcCCCCCCccCEEEeeeEEe
Q 009616          159 SAKLLTSLKLFGCKLEQ------PSHCANLQSLKKLSLDEVYV  195 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~  195 (531)
                      .+++|++|+|++|.+..      ...+...++|++|++++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            34555555555554433      11122345555555555544

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6.5e-08  Score=77.92  Aligned_cols=38  Identities=26%  Similarity=0.614  Sum_probs=35.1

Q ss_pred             CCccCCCCC----hHHHHHHhcCCChHHHHHHhhhhhhhhhh
Q 009616            6 DADHISDLP----TFIIHHIMSFLSPKDVVRTGILSTTWRKF   43 (531)
Q Consensus         6 ~~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSkrWr~l   43 (531)
                      ..|.|+.||    |||+.+|||||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            458999999    59999999999999999999999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.3e-06  Score=70.55  Aligned_cols=30  Identities=13%  Similarity=0.139  Sum_probs=13.8

Q ss_pred             ccEEEecCCcCCC-CcCCCCCCccCEEEeee
Q 009616          163 LTSLKLFGCKLEQ-PSHCANLQSLKKLSLDE  192 (531)
Q Consensus       163 L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~  192 (531)
                      .+.++.+++.+.. |..+..+++|++|++.+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~   40 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIEN   40 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCC
Confidence            3444444444433 44444455555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.6e-05  Score=66.82  Aligned_cols=104  Identities=14%  Similarity=0.031  Sum_probs=56.0

Q ss_pred             ccCEEEeeeEEechHhHHHHHhCCcccceEEeeecCCcceeeccccccccEEEEEeeccccceeeeeCCcccEEEecccc
Q 009616          184 SLKKLSLDEVYVNDQMVQSLVRECRVLEDLSFFYCFGLKRLRISEAHKLKSLILRFTYQELESVEIAVPSLQQLELSFSR  263 (531)
Q Consensus       184 ~L~~L~L~~~~~~~~~l~~~l~~~~~Le~L~L~~c~~~~~l~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~  263 (531)
                      ..+.++.+++.+..  .+.-+...++|++|++.++..+..+...                   ...++++|+.|++++|.
T Consensus         9 ~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~-------------------~f~~l~~L~~L~Ls~N~   67 (156)
T d2ifga3           9 GSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELR-------------------DLRGLGELRNLTIVKSG   67 (156)
T ss_dssp             SSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGG-------------------GSCSCCCCSEEECCSSC
T ss_pred             CCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCch-------------------hhccccccCcceeeccc
Confidence            34455555544422  1222445566666666555444433221                   11234566666666665


Q ss_pred             --ccceeeccCCCCccEEEEeCCCCChhhhhhhhcCCCCCcEEEecccc
Q 009616          264 --VPRLLDVAECPHLRKLVLFLPHFNDQEFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       264 --~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~c~  310 (531)
                        ...+..|..+++|+.|+|++|.++. .....+.. ..|+.|+|++++
T Consensus        68 l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~-~~l~~L~L~~Np  114 (156)
T d2ifga3          68 LRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQG-LSLQELVLSGNP  114 (156)
T ss_dssp             CCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCS-CCCCEEECCSSC
T ss_pred             cCCcccccccccccccceeccCCCCcc-cChhhhcc-ccccccccCCCc
Confidence              2223457777888888888888763 33333433 368888888754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.30  E-value=7.2e-05  Score=63.47  Aligned_cols=59  Identities=15%  Similarity=0.071  Sum_probs=31.5

Q ss_pred             CCcccEEEecccc-cc-----ceeeccCCCCccEEEEeCCCCC---h---hhhhhhhcCCCCCcEEEeccc
Q 009616          251 VPSLQQLELSFSR-VP-----RLLDVAECPHLRKLVLFLPHFN---D---QEFHPLISKFPLLEDLSIISL  309 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~~-----~~~~~~~~~~L~~L~L~~~~~~---~---~~~~~~l~~~~~L~~L~L~~c  309 (531)
                      .+.|++|++++|. +.     .-..+...++|++|+++++.+.   .   ..+...+...+.|+.|+++..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            4556666666555 11     1113455566777777655432   1   224445555677777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=5.5e-05  Score=63.89  Aligned_cols=21  Identities=10%  Similarity=-0.080  Sum_probs=15.5

Q ss_pred             HHHHHhCCcccceEEeeecCC
Q 009616          200 VQSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       200 l~~~l~~~~~Le~L~L~~c~~  220 (531)
                      ++.+...++.|++|+|++|..
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i   77 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRL   77 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCC
T ss_pred             hHHHHHhCCCCCEeeCCCccc
Confidence            455556788888888888864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.79  E-value=0.00035  Score=58.93  Aligned_cols=60  Identities=12%  Similarity=0.085  Sum_probs=36.0

Q ss_pred             CCcccEEEecccc-c-----cceeeccCCCCccEEEE--eCCCCChh---hhhhhhcCCCCCcEEEecccc
Q 009616          251 VPSLQQLELSFSR-V-----PRLLDVAECPHLRKLVL--FLPHFNDQ---EFHPLISKFPLLEDLSIISLE  310 (531)
Q Consensus       251 ~~~L~~L~l~~~~-~-----~~~~~~~~~~~L~~L~L--~~~~~~~~---~~~~~l~~~~~L~~L~L~~c~  310 (531)
                      .++++.+++.+|. +     .....+...++|+.++|  .++.+.++   .+...+...++|+.|++....
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            4556666666655 1     11224556677877666  35566653   344556678888888887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=8.7e-05  Score=62.58  Aligned_cols=61  Identities=21%  Similarity=0.096  Sum_probs=40.3

Q ss_pred             CCCCccEEEecCCcCCC-C---cCCCCCCccCEEEeeeEEech-HhHHHHHhCCcccceEEeeecCCc
Q 009616          159 SAKLLTSLKLFGCKLEQ-P---SHCANLQSLKKLSLDEVYVND-QMVQSLVRECRVLEDLSFFYCFGL  221 (531)
Q Consensus       159 ~~~~L~~L~L~~~~l~~-~---~~~~~l~~L~~L~L~~~~~~~-~~l~~~l~~~~~Le~L~L~~c~~~  221 (531)
                      .+++|++|+|++|+++. .   ..+..+++|+.|+|++|.++. ..+.. + ....|++|++.+|+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCcC
Confidence            46778888888887765 1   223467888888888888732 33332 2 3456888888877653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.61  E-value=0.00034  Score=59.14  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=17.3

Q ss_pred             CCccCEEEeeeEEechH---hHHHHHhCCcccceEEeeecC
Q 009616          182 LQSLKKLSLDEVYVNDQ---MVQSLVRECRVLEDLSFFYCF  219 (531)
Q Consensus       182 l~~L~~L~L~~~~~~~~---~l~~~l~~~~~Le~L~L~~c~  219 (531)
                      .++|++|+|++|.+++.   .+...+...+.|++|+|++|.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            44455555555544322   222334445555555555553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.92  E-value=0.0012  Score=55.35  Aligned_cols=61  Identities=16%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             CCCccEEEecCC-cCCC------CcCCCCCCccCEEEeeeEEechHhH---HHHHhCCcccceEEeeecCC
Q 009616          160 AKLLTSLKLFGC-KLEQ------PSHCANLQSLKKLSLDEVYVNDQMV---QSLVRECRVLEDLSFFYCFG  220 (531)
Q Consensus       160 ~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l---~~~l~~~~~Le~L~L~~c~~  220 (531)
                      .++|++|+|+++ .+..      ...+...++|++|++++|.+++...   ...+...+.++.+++.+|..
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            456666666653 3332      1122345666666666666543332   23345556666666665543