Citrus Sinensis ID: 009624


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
MATLSAAWMYQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSVERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGKHPGSRRKKYKTSVRARSSEVTVESSASLEPEVSEDATEDPKESSSEYVVYETESKAEGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDIGEKDEEGEDSDLDADADDEEEKITRNWSVLKSTPQLQKSKAKPKKDGPMSLEEAVDDSENLTDFLLDFDEED
cccccccEEEccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHcccEEEEcccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccHHHHHccccEEEEcccccccccccccccccccHHHHHcccccHHHHHccccccc
cccEcccHHccccccccccccccccccccccccccccEEEEccccEEEEEEcccccccccccccEEEEEcccccccccccccccccccEccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEcccccHccccccHHHHHccccccccccccccccccccccHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHccccEEEcccccHccccHHHHHHHHccccccccEEEcccccHEEccccccccccccHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHccccHHHHHcEEEcccccccccccccHHHHHHHHcccccccEEEccccccccccccccccccccHHHHHcccHHHHHHHHcccccc
MATLSAAWMyqdrglgpvdysddfitrkpnfnrfqtsflgsfptgILQTRLRLNNLLRRTSSvrrikcekndelpeyvsverppyysyfdsasgqlepasgarasipgeeywpegtaSRVRaarapeptgestgspsygkhpgsrrkkyktsvrarssevtvessaslepevsedatedpkessseyvvyeteskaegeteyeldkklgrphpfidpkvrkpieeplsseeLWWNWRKSDKEQWSrwqrrrpdVETVFLKAMAETGqiklygehptltETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMmgndirikrdpLAMRLREDQIkqiwggdpvyptvnyiqdpdevidyrgpdfheptpnMLDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDigekdeegedsdldadaddeeekiTRNWsvlkstpqlqkskakpkkdgpmsleeavddseNLTDFLLDFDEED
MATLSAAwmyqdrglgpVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLlrrtssvrrikcekndelpeyvsverpPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAArapeptgestgspsygkhpgsrrkkyktsvrarssevtvessaslepevsedatedpkessseyvvyeteskaegeteyeldkklgrphpfidpkvrkpieeplsseelwwnwrksdkeqwsrwqrrrpDVETVFLKAMAetgqiklygehptlTETALYRARRHLFKEERLKAeqerlerigpiayysewVKAWKRDTSREAIQKHYeetgedentqLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIkqiwggdpvyPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTkekteevemtdmDEAMAQAVDIGEKDEEGEDSDLdadaddeeekitrnwsvlkstpqlqkskakpkkdgpmsleeavddsenlTDFLLDFDEED
MATLSAAWMYQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQtrlrlnnllrrtssvrrIKCEKNDELPEYVSVERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGKHPGSRRKKYKTSVRARSSEVTVESSASLEPEVSEDATEDPKessseyvvyetesKAEGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISReeleeiltkekteeveMTDMDEAMAQAVDIGEKdeegedsdldadaddeeeKITRNWSVLKSTPQLQKSKAKPKKDGPMSLEEAVDDSENLTdflldfdeed
*****AAWMYQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSVERPPYYSYF*********************************************************************************************************************************************ELWWNWRKSDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDT*****************TQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHE***NMLDYLKE*************************************************************************************************************
*****AA*MYQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRI*C***********VERPPYYSYFD*******************EYWPEGT*******************************************************************************************************************LWWNWRK**************DVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLF*****************IAYYSEWVKAWKRDTS***********G*DENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREEL***************DMDEAMAQAVDI**************************W****************************DDSENLTDFLLDFD***
MATLSAAWMYQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSVERPPYYSYFDSASGQLEPASGARASIPGEEYWPE***************************************************************************************YELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKS**********RRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDIG********************KITRNWSVLKST***********************DSENLTDFLLDFDEED
****SA***YQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSVERPPYYSYFDSASGQ*E*****RASIPGEEYWPEGTASRVR****************************************************************EYV**ETESK*EGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDIGE************DAD***EKITRNWSVLKS**********************V*DSENLTDFLLDFD***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATLSAAWMYQDRGLGPVDYSDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSVERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGKHPGSRRKKYKTSVRARSSEVTVESSASLEPEVSEDATEDPKESSSEYVVYETESKAEGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEKTEEVEMTDMDEAMAQAVDIGEKDEEGEDSDLDADADDEEEKITRNWSVLKSTPQLQKSKAKPKKDGPMSLEEAVDDSENLTDFLLDFDEED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
359483911512 PREDICTED: uncharacterized protein LOC10 0.958 0.992 0.784 0.0
255580451524 conserved hypothetical protein [Ricinus 0.975 0.986 0.709 0.0
449433599527 PREDICTED: uncharacterized protein LOC10 0.988 0.994 0.696 0.0
224056401493 predicted protein [Populus trichocarpa] 0.913 0.981 0.719 0.0
449529937502 PREDICTED: uncharacterized LOC101217173 0.926 0.978 0.718 0.0
365222882528 Hop-interacting protein THI030 [Solanum 0.988 0.992 0.711 0.0
357447195540 hypothetical protein MTR_2g018740 [Medic 0.935 0.918 0.695 0.0
356549130519 PREDICTED: uncharacterized protein LOC10 0.935 0.955 0.710 0.0
297826929527 PTAC12 [Arabidopsis lyrata subsp. lyrata 0.960 0.965 0.623 1e-180
30686151527 plastid transcriptionally active 12 [Ara 0.958 0.963 0.631 1e-180
>gi|359483911|ref|XP_002272288.2| PREDICTED: uncharacterized protein LOC100251522 [Vitis vinifera] gi|297740769|emb|CBI30951.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/511 (78%), Positives = 453/511 (88%), Gaps = 3/511 (0%)

Query: 21  SDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSV 80
           +D F+  K +F+ FQTSF+GSFP GILQ RL +N   RR      IKCEK D   E +SV
Sbjct: 4   TDGFVVGKSSFHHFQTSFIGSFPAGILQVRLGVNGTQRRVPLFPCIKCEKKDGFFEQISV 63

Query: 81  ERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGK 140
           ERPPY SYFDS SGQLEPASGARASIP EEYWPEGTA RVRAARAPEPTG+S G+PS+GK
Sbjct: 64  ERPPYDSYFDSTSGQLEPASGARASIPSEEYWPEGTAGRVRAARAPEPTGKSAGAPSFGK 123

Query: 141 HPGSRRKKYKTSVRA-RSSEVTVESSASLEPEVSEDATEDPKESSSEYVVYETESKAEGE 199
            PGSRRKK+KTSV A  SSE++V+ S  + PE S+D  E+PK+ SSEYVVYET+   E  
Sbjct: 124 RPGSRRKKHKTSVAAPESSEISVDLSEQVAPENSDDMMEEPKDVSSEYVVYETKPDEEET 183

Query: 200 TEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSRWQRRRPDVETVFL 259
            EY+LDKKLGRPHPFIDP+ +KP+ EPL+SEELWWNWRK DKEQWSRWQRRRPDVETVFL
Sbjct: 184 REYDLDKKLGRPHPFIDPEAKKPLGEPLTSEELWWNWRKPDKEQWSRWQRRRPDVETVFL 243

Query: 260 KAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWK 319
           KAMAETGQ+KLYGEHPTLTET+LYRARRHLFK+ERL+AEQERLE+IGP+AYYSEWV+AWK
Sbjct: 244 KAMAETGQVKLYGEHPTLTETSLYRARRHLFKDERLQAEQERLEKIGPMAYYSEWVEAWK 303

Query: 320 RDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIK 379
           RDTSREA+QKH+EETGEDENTQLIEMF HQTDREYRIMMG DIRI+RDPLAMR+REDQIK
Sbjct: 304 RDTSREAVQKHFEETGEDENTQLIEMFQHQTDREYRIMMGTDIRIQRDPLAMRMREDQIK 363

Query: 380 QIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEK 439
           QIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNML +LKEHGK+ISREELE+IL KEK
Sbjct: 364 QIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLAFLKEHGKIISREELEKILAKEK 423

Query: 440 TEEVEMTDMDEAMAQAVDIGEKDEEGEDSDLDADADDEEEKITRNWSVLKSTPQLQKSKA 499
           TEE+E+ DMDEAMA+AVDIGE D+EGED+++  + DDEEEKITRNWSVLKSTPQL+KSK 
Sbjct: 424 TEELEIADMDEAMARAVDIGENDDEGEDTEV--EGDDEEEKITRNWSVLKSTPQLRKSKD 481

Query: 500 KPKKDGPMSLEEAVDDSENLTDFLLDFDEED 530
           KPKK+GPMS+EEAVDDSENLTDFLLDF+E++
Sbjct: 482 KPKKEGPMSVEEAVDDSENLTDFLLDFEEDE 512




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580451|ref|XP_002531051.1| conserved hypothetical protein [Ricinus communis] gi|223529346|gb|EEF31312.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449433599|ref|XP_004134585.1| PREDICTED: uncharacterized protein LOC101217173 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056401|ref|XP_002298838.1| predicted protein [Populus trichocarpa] gi|222846096|gb|EEE83643.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449529937|ref|XP_004171954.1| PREDICTED: uncharacterized LOC101217173 [Cucumis sativus] Back     alignment and taxonomy information
>gi|365222882|gb|AEW69793.1| Hop-interacting protein THI030 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|357447195|ref|XP_003593873.1| hypothetical protein MTR_2g018740 [Medicago truncatula] gi|355482921|gb|AES64124.1| hypothetical protein MTR_2g018740 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356549130|ref|XP_003542950.1| PREDICTED: uncharacterized protein LOC100798194 [Glycine max] Back     alignment and taxonomy information
>gi|297826929|ref|XP_002881347.1| PTAC12 [Arabidopsis lyrata subsp. lyrata] gi|297327186|gb|EFH57606.1| PTAC12 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30686151|ref|NP_181011.2| plastid transcriptionally active 12 [Arabidopsis thaliana] gi|330253908|gb|AEC09002.1| plastid transcriptionally active 12 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
TAIR|locus:2062286527 PTAC12 "AT2G34640" [Arabidopsi 0.835 0.840 0.678 3e-165
TAIR|locus:2062286 PTAC12 "AT2G34640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
 Identities = 308/454 (67%), Positives = 359/454 (79%)

Query:    69 EKNDELPEYVSVERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEP 128
             +K++E  EYV+VER PY+SY DS SG+LEPASGARASIPGE+YWPEGT+SRVRAARAP+P
Sbjct:    71 KKSEEGFEYVTVERHPYHSYMDSTSGKLEPASGARASIPGEDYWPEGTSSRVRAARAPQP 130

Query:   129 TGESTGSPSYGKHPGSRRKKYKTSVRARSSEVTVESSASLEPEVSEDATEDPKXXXXXXX 188
              GES+  PSYGK+PGSRRKK +   +A    VTVE++  +    SED++E+ +       
Sbjct:   131 AGESSSFPSYGKNPGSRRKKNR---KATEENVTVETNDEVSD--SEDSSEEEENDSSDGF 185

Query:   189 XXXXXX--KAEGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSR 246
                     + E ET +ELDKKLGRPHPFIDP  +K IE+ L+S+E WWNWRK +KEQWSR
Sbjct:   186 VTYKNEFEREEEETGFELDKKLGRPHPFIDPTKKKQIEKTLTSDESWWNWRKPEKEQWSR 245

Query:   247 WQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIG 306
             WQRRRPDVETVFLKAMAETGQ+KLYGE PTLTET+LYRARRHLFKEERL+AE+ERL + G
Sbjct:   246 WQRRRPDVETVFLKAMAETGQVKLYGEEPTLTETSLYRARRHLFKEERLQAERERLAKEG 305

Query:   307 PIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKR 366
             P+A+YSEWVKAWKRDTSREA+QKH+EETGEDENTQLIEMF HQTDREYRIMMG DIRIKR
Sbjct:   306 PMAFYSEWVKAWKRDTSREAVQKHFEETGEDENTQLIEMFSHQTDREYRIMMGTDIRIKR 365

Query:   367 DPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVI 426
             DPLAMR+REDQIKQIWGGDPVYPT+NYIQDP+ V+D+RGPDFHEPTPNML YLKE+GKVI
Sbjct:   366 DPLAMRMREDQIKQIWGGDPVYPTINYIQDPNAVMDFRGPDFHEPTPNMLSYLKENGKVI 425

Query:   427 SRXXXXXXXXXXXXXXXXMTDMDEAMAQAVDIGEKXXXXXXXXXXXXXXXXXXKITRNWS 486
             SR                + DMD+AMAQAVDIGE                   K+ RNWS
Sbjct:   426 SREMHEALLTKEKTEQLEVPDMDDAMAQAVDIGENDDDEDDADVEKDDE----KVPRNWS 481

Query:   487 VLKSTPQLQKSKAKPKKDGPMSLEEAVDDSENLT 520
             VLK TP+L+ +K KPKK+G MSL+EAVDD+ENLT
Sbjct:   482 VLKETPELRTAKPKPKKEGRMSLDEAVDDAENLT 515


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.131   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      530       456   0.00094  118 3  11 23  0.48    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  310 KB (2157 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  43.59u 0.14s 43.73t   Elapsed:  00:00:02
  Total cpu time:  43.59u 0.15s 43.74t   Elapsed:  00:00:02
  Start:  Fri May 10 15:27:49 2013   End:  Fri May 10 15:27:51 2013


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0009508 "plastid chromosome" evidence=IDA
GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP
GO:0008283 "cell proliferation" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.I.4478.1
hypothetical protein (465 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIX.722.1
hypothetical protein (895 aa)
      0.568
estExt_Genewise1_v1.C_LG_XV1980
hypothetical protein (556 aa)
      0.527
eugene3.00020729
hypothetical protein (325 aa)
      0.503
fgenesh4_pg.C_LG_I000919
hypothetical protein (777 aa)
      0.452
gw1.III.385.1
hypothetical protein (167 aa)
     0.430
eugene3.00060818
hypothetical protein (342 aa)
      0.419

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 530
PF1133273 DUF3134: Protein of unknown function (DUF3134); In 86.49
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria Back     alignment and domain information
Probab=86.49  E-value=0.27  Score=41.31  Aligned_cols=20  Identities=35%  Similarity=0.785  Sum_probs=17.8

Q ss_pred             hhhHHHHHHhCccccHHHHH
Q 009624          413 PNMLDYLKEHGKVISREELE  432 (530)
Q Consensus       413 P~~v~~L~e~G~~IsrEel~  432 (530)
                      +.||+.|...|+||.|+..+
T Consensus        22 ~SlLdWLe~tGRLi~rd~~e   41 (73)
T PF11332_consen   22 SSLLDWLESTGRLIARDPQE   41 (73)
T ss_pred             cHHHHHHHHcCCccccCccc
Confidence            67999999999999997665




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 32/323 (9%), Positives = 96/323 (29%), Gaps = 79/323 (24%)

Query: 168 LEPEVSEDATEDPKESSSEYVVYET-ESKAEGETEYELDKKLGRPHPFIDPKVRKPIEEP 226
           L  E  +         S    ++ T  SK E   +  +++ L   + F+   ++    +P
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 227 LSSEELWWNWRK---SDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALY 283
                ++   R    +D + ++++   R               +++           AL 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL----------KLR----------QALL 145

Query: 284 RARRHLF----------KEERLKAE---QERLERIGPIAYYSEWVKAWKRDTSREAIQKH 330
             R              K   +  +     +++       +  W+     ++    ++  
Sbjct: 146 ELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEM- 201

Query: 331 YEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPT 390
                       ++   +Q D  +     +   IK    +++    +++++      Y  
Sbjct: 202 ------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLK-SKPYEN 245

Query: 391 ----VNYIQDPDEVIDYRGPDFHEPT------PNMLDYLK-EHGKVISREELEEILTKEK 439
               +  +Q+  +  +    +             + D+L       IS +     LT ++
Sbjct: 246 CLLVLLNVQNA-KAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 440 TEEVEMTDMDEAMAQAVDIGEKD 462
            + +        + + +D   +D
Sbjct: 303 VKSL--------LLKYLDCRPQD 317


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00