Citrus Sinensis ID: 009624
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 530 | ||||||
| 359483911 | 512 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.992 | 0.784 | 0.0 | |
| 255580451 | 524 | conserved hypothetical protein [Ricinus | 0.975 | 0.986 | 0.709 | 0.0 | |
| 449433599 | 527 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.994 | 0.696 | 0.0 | |
| 224056401 | 493 | predicted protein [Populus trichocarpa] | 0.913 | 0.981 | 0.719 | 0.0 | |
| 449529937 | 502 | PREDICTED: uncharacterized LOC101217173 | 0.926 | 0.978 | 0.718 | 0.0 | |
| 365222882 | 528 | Hop-interacting protein THI030 [Solanum | 0.988 | 0.992 | 0.711 | 0.0 | |
| 357447195 | 540 | hypothetical protein MTR_2g018740 [Medic | 0.935 | 0.918 | 0.695 | 0.0 | |
| 356549130 | 519 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.955 | 0.710 | 0.0 | |
| 297826929 | 527 | PTAC12 [Arabidopsis lyrata subsp. lyrata | 0.960 | 0.965 | 0.623 | 1e-180 | |
| 30686151 | 527 | plastid transcriptionally active 12 [Ara | 0.958 | 0.963 | 0.631 | 1e-180 |
| >gi|359483911|ref|XP_002272288.2| PREDICTED: uncharacterized protein LOC100251522 [Vitis vinifera] gi|297740769|emb|CBI30951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/511 (78%), Positives = 453/511 (88%), Gaps = 3/511 (0%)
Query: 21 SDDFITRKPNFNRFQTSFLGSFPTGILQTRLRLNNLLRRTSSVRRIKCEKNDELPEYVSV 80
+D F+ K +F+ FQTSF+GSFP GILQ RL +N RR IKCEK D E +SV
Sbjct: 4 TDGFVVGKSSFHHFQTSFIGSFPAGILQVRLGVNGTQRRVPLFPCIKCEKKDGFFEQISV 63
Query: 81 ERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEPTGESTGSPSYGK 140
ERPPY SYFDS SGQLEPASGARASIP EEYWPEGTA RVRAARAPEPTG+S G+PS+GK
Sbjct: 64 ERPPYDSYFDSTSGQLEPASGARASIPSEEYWPEGTAGRVRAARAPEPTGKSAGAPSFGK 123
Query: 141 HPGSRRKKYKTSVRA-RSSEVTVESSASLEPEVSEDATEDPKESSSEYVVYETESKAEGE 199
PGSRRKK+KTSV A SSE++V+ S + PE S+D E+PK+ SSEYVVYET+ E
Sbjct: 124 RPGSRRKKHKTSVAAPESSEISVDLSEQVAPENSDDMMEEPKDVSSEYVVYETKPDEEET 183
Query: 200 TEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSRWQRRRPDVETVFL 259
EY+LDKKLGRPHPFIDP+ +KP+ EPL+SEELWWNWRK DKEQWSRWQRRRPDVETVFL
Sbjct: 184 REYDLDKKLGRPHPFIDPEAKKPLGEPLTSEELWWNWRKPDKEQWSRWQRRRPDVETVFL 243
Query: 260 KAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIGPIAYYSEWVKAWK 319
KAMAETGQ+KLYGEHPTLTET+LYRARRHLFK+ERL+AEQERLE+IGP+AYYSEWV+AWK
Sbjct: 244 KAMAETGQVKLYGEHPTLTETSLYRARRHLFKDERLQAEQERLEKIGPMAYYSEWVEAWK 303
Query: 320 RDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIK 379
RDTSREA+QKH+EETGEDENTQLIEMF HQTDREYRIMMG DIRI+RDPLAMR+REDQIK
Sbjct: 304 RDTSREAVQKHFEETGEDENTQLIEMFQHQTDREYRIMMGTDIRIQRDPLAMRMREDQIK 363
Query: 380 QIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVISREELEEILTKEK 439
QIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNML +LKEHGK+ISREELE+IL KEK
Sbjct: 364 QIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLAFLKEHGKIISREELEKILAKEK 423
Query: 440 TEEVEMTDMDEAMAQAVDIGEKDEEGEDSDLDADADDEEEKITRNWSVLKSTPQLQKSKA 499
TEE+E+ DMDEAMA+AVDIGE D+EGED+++ + DDEEEKITRNWSVLKSTPQL+KSK
Sbjct: 424 TEELEIADMDEAMARAVDIGENDDEGEDTEV--EGDDEEEKITRNWSVLKSTPQLRKSKD 481
Query: 500 KPKKDGPMSLEEAVDDSENLTDFLLDFDEED 530
KPKK+GPMS+EEAVDDSENLTDFLLDF+E++
Sbjct: 482 KPKKEGPMSVEEAVDDSENLTDFLLDFEEDE 512
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580451|ref|XP_002531051.1| conserved hypothetical protein [Ricinus communis] gi|223529346|gb|EEF31312.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449433599|ref|XP_004134585.1| PREDICTED: uncharacterized protein LOC101217173 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224056401|ref|XP_002298838.1| predicted protein [Populus trichocarpa] gi|222846096|gb|EEE83643.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449529937|ref|XP_004171954.1| PREDICTED: uncharacterized LOC101217173 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|365222882|gb|AEW69793.1| Hop-interacting protein THI030 [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|357447195|ref|XP_003593873.1| hypothetical protein MTR_2g018740 [Medicago truncatula] gi|355482921|gb|AES64124.1| hypothetical protein MTR_2g018740 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356549130|ref|XP_003542950.1| PREDICTED: uncharacterized protein LOC100798194 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297826929|ref|XP_002881347.1| PTAC12 [Arabidopsis lyrata subsp. lyrata] gi|297327186|gb|EFH57606.1| PTAC12 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30686151|ref|NP_181011.2| plastid transcriptionally active 12 [Arabidopsis thaliana] gi|330253908|gb|AEC09002.1| plastid transcriptionally active 12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 530 | ||||||
| TAIR|locus:2062286 | 527 | PTAC12 "AT2G34640" [Arabidopsi | 0.835 | 0.840 | 0.678 | 3e-165 |
| TAIR|locus:2062286 PTAC12 "AT2G34640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 308/454 (67%), Positives = 359/454 (79%)
Query: 69 EKNDELPEYVSVERPPYYSYFDSASGQLEPASGARASIPGEEYWPEGTASRVRAARAPEP 128
+K++E EYV+VER PY+SY DS SG+LEPASGARASIPGE+YWPEGT+SRVRAARAP+P
Sbjct: 71 KKSEEGFEYVTVERHPYHSYMDSTSGKLEPASGARASIPGEDYWPEGTSSRVRAARAPQP 130
Query: 129 TGESTGSPSYGKHPGSRRKKYKTSVRARSSEVTVESSASLEPEVSEDATEDPKXXXXXXX 188
GES+ PSYGK+PGSRRKK + +A VTVE++ + SED++E+ +
Sbjct: 131 AGESSSFPSYGKNPGSRRKKNR---KATEENVTVETNDEVSD--SEDSSEEEENDSSDGF 185
Query: 189 XXXXXX--KAEGETEYELDKKLGRPHPFIDPKVRKPIEEPLSSEELWWNWRKSDKEQWSR 246
+ E ET +ELDKKLGRPHPFIDP +K IE+ L+S+E WWNWRK +KEQWSR
Sbjct: 186 VTYKNEFEREEEETGFELDKKLGRPHPFIDPTKKKQIEKTLTSDESWWNWRKPEKEQWSR 245
Query: 247 WQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALYRARRHLFKEERLKAEQERLERIG 306
WQRRRPDVETVFLKAMAETGQ+KLYGE PTLTET+LYRARRHLFKEERL+AE+ERL + G
Sbjct: 246 WQRRRPDVETVFLKAMAETGQVKLYGEEPTLTETSLYRARRHLFKEERLQAERERLAKEG 305
Query: 307 PIAYYSEWVKAWKRDTSREAIQKHYEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKR 366
P+A+YSEWVKAWKRDTSREA+QKH+EETGEDENTQLIEMF HQTDREYRIMMG DIRIKR
Sbjct: 306 PMAFYSEWVKAWKRDTSREAVQKHFEETGEDENTQLIEMFSHQTDREYRIMMGTDIRIKR 365
Query: 367 DPLAMRLREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGPDFHEPTPNMLDYLKEHGKVI 426
DPLAMR+REDQIKQIWGGDPVYPT+NYIQDP+ V+D+RGPDFHEPTPNML YLKE+GKVI
Sbjct: 366 DPLAMRMREDQIKQIWGGDPVYPTINYIQDPNAVMDFRGPDFHEPTPNMLSYLKENGKVI 425
Query: 427 SRXXXXXXXXXXXXXXXXMTDMDEAMAQAVDIGEKXXXXXXXXXXXXXXXXXXKITRNWS 486
SR + DMD+AMAQAVDIGE K+ RNWS
Sbjct: 426 SREMHEALLTKEKTEQLEVPDMDDAMAQAVDIGENDDDEDDADVEKDDE----KVPRNWS 481
Query: 487 VLKSTPQLQKSKAKPKKDGPMSLEEAVDDSENLT 520
VLK TP+L+ +K KPKK+G MSL+EAVDD+ENLT
Sbjct: 482 VLKETPELRTAKPKPKKEGRMSLDEAVDDAENLT 515
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 530 456 0.00094 118 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 626 (67 KB)
Total size of DFA: 310 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.59u 0.14s 43.73t Elapsed: 00:00:02
Total cpu time: 43.59u 0.15s 43.74t Elapsed: 00:00:02
Start: Fri May 10 15:27:49 2013 End: Fri May 10 15:27:51 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.I.4478.1 | hypothetical protein (465 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
| gw1.XIX.722.1 | • | • | 0.568 | ||||||||
| estExt_Genewise1_v1.C_LG_XV1980 | • | • | 0.527 | ||||||||
| eugene3.00020729 | • | • | 0.503 | ||||||||
| fgenesh4_pg.C_LG_I000919 | • | • | 0.452 | ||||||||
| gw1.III.385.1 | • | • | • | 0.430 | |||||||
| eugene3.00060818 | • | • | 0.419 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 530 | |||
| PF11332 | 73 | DUF3134: Protein of unknown function (DUF3134); In | 86.49 |
| >PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria | Back alignment and domain information |
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Probab=86.49 E-value=0.27 Score=41.31 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=17.8
Q ss_pred hhhHHHHHHhCccccHHHHH
Q 009624 413 PNMLDYLKEHGKVISREELE 432 (530)
Q Consensus 413 P~~v~~L~e~G~~IsrEel~ 432 (530)
+.||+.|...|+||.|+..+
T Consensus 22 ~SlLdWLe~tGRLi~rd~~e 41 (73)
T PF11332_consen 22 SSLLDWLESTGRLIARDPQE 41 (73)
T ss_pred cHHHHHHHHcCCccccCccc
Confidence 67999999999999997665
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 530 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 48.3 bits (114), Expect = 6e-06
Identities = 32/323 (9%), Positives = 96/323 (29%), Gaps = 79/323 (24%)
Query: 168 LEPEVSEDATEDPKESSSEYVVYET-ESKAEGETEYELDKKLGRPHPFIDPKVRKPIEEP 226
L E + S ++ T SK E + +++ L + F+ ++ +P
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 227 LSSEELWWNWRK---SDKEQWSRWQRRRPDVETVFLKAMAETGQIKLYGEHPTLTETALY 283
++ R +D + ++++ R +++ AL
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL----------KLR----------QALL 145
Query: 284 RARRHLF----------KEERLKAE---QERLERIGPIAYYSEWVKAWKRDTSREAIQKH 330
R K + + +++ + W+ ++ ++
Sbjct: 146 ELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEM- 201
Query: 331 YEETGEDENTQLIEMFCHQTDREYRIMMGNDIRIKRDPLAMRLREDQIKQIWGGDPVYPT 390
++ +Q D + + IK +++ +++++ Y
Sbjct: 202 ------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLK-SKPYEN 245
Query: 391 ----VNYIQDPDEVIDYRGPDFHEPT------PNMLDYLK-EHGKVISREELEEILTKEK 439
+ +Q+ + + + + D+L IS + LT ++
Sbjct: 246 CLLVLLNVQNA-KAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 440 TEEVEMTDMDEAMAQAVDIGEKD 462
+ + + + +D +D
Sbjct: 303 VKSL--------LLKYLDCRPQD 317
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00