Citrus Sinensis ID: 009647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MGLSNDMSFNNGKRKMKIIMKMCSVIWFLVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccccHEEEHHcccEEEEcccHHHHHHHHHHHHEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHcccccccEEcHHHHHHccccccccHHHHHEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mglsndmsfnngkRKMKIIMKMCSVIWFLVGNVAAQRRRQNAVTVGKERRESLVRAKRLCrvgtsadgevssdsdmmVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSrfefppietalkagaIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAhlgekssspvAEQCAWALGNVAGEGEEFRNVLlsqgalpplarmmlpnkgsTVRTAAWALSnlikgpdpkpatelIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLgnlvagdsstisdvlvpghgiTDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNlcvsptegegkpkLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLrgmpnhegtklveredGIDAMERFQFHENEDLRNMANGLVdkyfgedyglde
Flexible Loop (DISEMBL)
mglsndmsfnnGKRKMKIIMKMCSVIWFLVGNvaaqrrrqnavtvgkerreslvrakrlcrvgtsadgevssdsdmMVDEEQSILEMQTSSAVEELKSAVayhgkgamqKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSnlikgpdpkpATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLrgmpnhegtklvereDGIDAMERFQFhenedlrnmANGLVDKYFGEDYGLDE
Low Complexity Region (SEG)
MGLSNDMSFNNGKRKMKIIMKMCSVIWFLVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNAlrelrrllsrfefPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKallpalpllIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQlihssealalllhllstsPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Disordered region (IsUnstruct)
***************MKIIMKMCSVIWFLVGNVAAQRRR**AV********************************************************VAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLV*****IDAMERFQFHE**DLRNMANGLVDKYFGE******
Disordered Region (DISOPRED)
********************************************VGKERRESLVRAK**********************************AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL**
Disordered Region (DISEMBL)
MGLSNDMSFNNGKRKMKIIMKMCSVIWFLVGNVAAQ****************LVRAKRLCRVGT***********MMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Disordered Region (DISPRO)
*************RKMKIIMKMCSVIWFLVGNVAAQRRRQNAVTVGKERRESLVR*K******************************QTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLSNDMSFNNGKRKMKIIMKMCSVIWFLVGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
Q9FYP9	528	Importin subunit alpha-2	yes	no	0.945	0.948	0.657	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.854	0.861	0.319	6e-56
Q02821	542	Importin subunit alpha OS	yes	no	0.877	0.857	0.301	2e-55
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.871	0.865	0.309	2e-53
A9QM74	516	Importin subunit alpha-8	yes	no	0.741	0.761	0.326	2e-52
O04294	531	Importin subunit alpha-2	no	no	0.854	0.853	0.299	3e-52
Q96321	532	Importin subunit alpha-1	no	no	0.856	0.853	0.315	8e-52
O22478	527	Importin subunit alpha OS	N/A	no	0.864	0.869	0.307	6e-51
Q19969	514	Importin subunit alpha-3	yes	no	0.862	0.889	0.277	8e-51
O35343	521	Importin subunit alpha-4	yes	no	0.849	0.863	0.270	4e-50

>sp|Q9FYP9|IMA2_ORYSJ Importin subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2 SV=1

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/502 (65%), Positives = 406/502 (80%), Gaps = 1/502 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVS-SDSDMMVDEEQSILEMQ 88
           V N AA RRR+ A+ +GKERRE+L+RAKR+CR   S   E    + DM+VDEE++ LE +
Sbjct: 27  VRNTAASRRREQAIAIGKERREALIRAKRVCRAPISGSDEAEMEEGDMVVDEEKACLEAK 86

Query: 89  TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF 148
           T+ AVEELKSA++  GKG  +K++ ALR+LRRLLS+ E P ++TA+KAGA+P+LVQ L+F
Sbjct: 87  TAHAVEELKSALSIQGKGVQKKKIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSF 146

Query: 149 GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG 208
           GS DEQLLEAAWCLTNIAAG+ EETK+LLPALPLLIAHLGEKSS+ VAEQCAWA+GNVAG
Sbjct: 147 GSSDEQLLEAAWCLTNIAAGEPEETKSLLPALPLLIAHLGEKSSTLVAEQCAWAIGNVAG 206

Query: 209 EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
           EG E R+ LL+QGAL PL R+M  +KGST RTAAWA+SNLIKGPDPK A ELI +DG+L+
Sbjct: 207 EGAELRSTLLAQGALRPLTRLMFSSKGSTARTAAWAMSNLIKGPDPKAANELITIDGVLN 266

Query: 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
           AI+  L++ DEEL TEVAWVVVYLSALS+   SL+V+S V QLL+ RL +S +LQLLIPV
Sbjct: 267 AIIASLEKEDEELATEVAWVVVYLSALSDRGISLIVRSSVPQLLIGRLFSSENLQLLIPV 326

Query: 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388
           LR LGNL+A D   +  VL  GH I DQ ++ L+KCLKS++RVL+KE++W LSNIAAGS 
Sbjct: 327 LRGLGNLIAADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVLRKESSWALSNIAAGSF 386

Query: 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448
           EHK+LI +SEA  +L+ L+++  FDI++E AY LGNLCV PT     PK+I EHLV++V 
Sbjct: 387 EHKKLIFASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVD 446

Query: 449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENE 508
            G L GFI LVRSAD++ A LGLQF+ELV+RG PN +G KLVE EDGI+AMERFQFHENE
Sbjct: 447 GGALPGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQGPKLVEMEDGIEAMERFQFHENE 506

Query: 509 DLRNMANGLVDKYFGEDYGLDE 530
            +RNMANGLVD+YFGEDYGLDE
Sbjct: 507 QMRNMANGLVDEYFGEDYGLDE 528

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  219 bits (557), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 160/501 (31%), Positives = 260/501 (51%), Gaps = 48/501 (9%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR  N V + K RRE  +  KR  R G  A   V + +   VD++           +E 
Sbjct: 27  RRREDNMVEIRKSRREESLLKKR--REGLQAQAPVPASAATGVDKK-----------LES 73

Query: 96  LKSAVA--YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDE 153
           L + +   Y     +Q  + A  + R+LLS    PPIE  +++G +P  VQ L      +
Sbjct: 74  LPAMIGGVYSDDNNLQ--LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQ 131

Query: 154 QLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE 211
              EAAW LTNIA+G  E TK ++   A+P+ +  LG  SS  V EQ  WALGNVAG+  
Sbjct: 132 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSP 190

Query: 212 EFRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
           + R+++L+ GA LP LA++    K S +R A W LSN  +G  P+P+ E  +    L A+
Sbjct: 191 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-KPQPSFEQTR--PALPAL 247

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
            R +   DEE+ T+  W + YLS  +N     ++++GV   LVE L    S  +LIP LR
Sbjct: 248 ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLHPSPSVLIPALR 306

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 390
           ++GN+V GD +    ++   H     ++++L + LK   + +KKEA W +SNI AG+ + 
Sbjct: 307 TVGNIVTGDDAQTQCII--DHQALPCLLSLLTQNLK---KSIKKEACWTISNITAGNKDQ 361

Query: 391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
            Q + ++  +  L++LL T+ FDIKKE A+ + N     T G        + +  LV  G
Sbjct: 362 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN----ATSGGS-----HDQIKYLVSEG 412

Query: 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG---------TKLVEREDGIDAMER 501
           C+    DL+   DI    + L+ +E +L+     +          +++++  +G++ +E 
Sbjct: 413 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 472

Query: 502 FQFHENEDLRNMANGLVDKYF 522
            Q H+N ++   A  +++ Y+
Sbjct: 473 LQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q02821|IMA1_YEAST Importin subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP1 PE=1 SV=1

 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/504 (30%), Positives = 253/504 (50%), Gaps = 39/504 (7%)

Query: 37  RRRQNAVTV---GKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEE-QSILEMQTSSA 92
           RRR++   V     +R E+L + +        AD +   +S +  D++  S L+ +    
Sbjct: 33  RRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92

Query: 93  VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD 152
            ++L S         MQ++++A  + R++LSR   PPI+  ++AG +P LV+ +    P+
Sbjct: 93  TQQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145

Query: 153 EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210
              LEAAW LTNIA+G   +TK ++   A+PL I  L    S  V EQ  WALGNVAG+ 
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWALGNVAGDS 204

Query: 211 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
            ++R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTL 262

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
            + +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR
Sbjct: 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALR 321

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 390
           ++GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E 
Sbjct: 322 AVGNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 375

Query: 391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
            Q +  +  +  L+ LL  + +  KKE  + + N   + + G  +P +I+     LV +G
Sbjct: 376 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQG 428

Query: 451 CLSGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMER 501
           C+    DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +  
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488

Query: 502 FQFHENEDLRNMANGLVDKYFGED 525
            Q +EN+ +   A  +++ YFGE+
Sbjct: 489 CQQNENDKIYEKAYKIIETYFGEE 512

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 156/504 (30%), Positives = 250/504 (49%), Gaps = 42/504 (8%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR  N V + K RRE  +  KR  R G  A    ++ +  ++    ++ +      +E 
Sbjct: 27  RRREDNMVEIRKSRREESLLKKR--RDGLPAAAAAAAAASPLLAHSSALQQ-----KLEG 79

Query: 96  LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL 155
           L + V          ++ A  + R+LLS    PPIE  +  G +P  +  L      +  
Sbjct: 80  LPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQ 139

Query: 156 LEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 213
            EAAW LTNIA+G  + TK ++   A+P+ +  L   S   V EQ  WALGNVAG+  + 
Sbjct: 140 FEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSED-VREQAVWALGNVAGDSPKC 198

Query: 214 RNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
           R+++L+ G L PL + +  + K S +R A W LSN  +G   KP     +V   L A+ R
Sbjct: 199 RDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRG---KPQPNFEQVKPALSALQR 255

Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            +   DEE+ T+  W + YLS  +N     +++SGV   LVE L    S  +LIP LR++
Sbjct: 256 LIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVE-LLMHPSASVLIPALRTV 314

Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHK 391
           GN+V GD      V      I  Q +  L+  L + H+  +KKEA W +SNI AG+ E  
Sbjct: 315 GNIVTGDDMQTQCV------IDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQI 368

Query: 392 QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451
           Q + ++  +A L+HLL T+ FDIKKE A+ + N     T          + +  LV +GC
Sbjct: 369 QAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGT---------HDQIKYLVAQGC 419

Query: 452 LSGFIDLVRSADIEAARLGLQFMELVLR----------GMPNHEGTKLVEREDGIDAMER 501
           +    DL+   D     + L+ +E +L+          G  N    ++++  +G++ +E 
Sbjct: 420 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYA-QMIDDAEGLEKIEN 478

Query: 502 FQFHENEDLRNMANGLVDKYFGED 525
            Q H+N ++   A  +++ Y+ E+
Sbjct: 479 LQSHDNTEIYEKAVKMLESYWLEE 502

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A9QM74|IMA8_HUMAN Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=1 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 221/419 (52%), Gaps = 26/419 (6%)

Query: 114 ALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 173
           A +  R++LS+ + PP++  ++AG IP +V+ L          EAAW LTNIA+G  E+T
Sbjct: 90  ATQTARKMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQT 149

Query: 174 KALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231
           +A++   A+  LI  L   S+  V EQ  WALGN+AG+G EFR+ +++  A+P L  ++ 
Sbjct: 150 RAVVEGGAIQPLIELLS-SSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALIS 208

Query: 232 PNKGST-VRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 290
           P    T +R   W LSNL +  +P P    +K   +L A+L  L+  D E+ ++  W + 
Sbjct: 209 PTLPITFLRNITWTLSNLCRNKNPYPCDTAVK--QILPALLHLLQHQDSEVLSDACWALS 266

Query: 291 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 350
           YL+  SN     +V +GVL  LV  L TS+ L +L P LR++GN+V G        +  G
Sbjct: 267 YLTDGSNKRIGQVVNTGVLPRLV-VLMTSSELNVLTPSLRTVGNIVTGTDEQTQMAIDAG 325

Query: 351 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS 410
                 ++ VL + L+     ++KEAAW LSN+AAG   H Q + + + L  L+ LL   
Sbjct: 326 ------MLNVLPQLLQHNKPSIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKNG 379

Query: 411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLG 470
            F ++KE  +++ N     T          + L+ LV  G L   ++L+ + D++   + 
Sbjct: 380 EFKVQKEAVWMVANFATGAT---------MDQLIQLVHSGVLEPLVNLLTAPDVKIVLII 430

Query: 471 LQFMELVLRGMPNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 525
           L  +  +L+        +    L+E   GID +E  Q HEN  +   A  +++K+FGE+
Sbjct: 431 LDVISCILQAAEKRSEKENLCLLIEELGGIDRIEALQLHENRQIGQSALNIIEKHFGEE 489

Functions in nuclear protein import.

Homo sapiens (taxid: 9606)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 255/505 (50%), Gaps = 52/505 (10%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR  N V + K +RE  ++ KR     + A G  +  ++            Q  S+  +
Sbjct: 27  RRREDNLVEIRKNKREENLQKKRF--TSSMAFGSATGQTE------------QDLSSANQ 72

Query: 96  LKSAVAYHGKGAMQKRVNALRE----LRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP 151
           LK  +     G   +  N+  E    LR+LLS  + PPI   +++G +P +V+ L+    
Sbjct: 73  LKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDF 132

Query: 152 DEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209
            +   EAAW LTNIA+G  E T  ++   A+P+ I  L   +S  V EQ  WALGNVAG+
Sbjct: 133 PKLQFEAAWALTNIASGTSENTNVIIESGAVPIFI-QLLSSASEDVREQAVWALGNVAGD 191

Query: 210 GEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
             + R+++LS GA+ PL      N K S +R A W LSN  +G  P PA E  +    L 
Sbjct: 192 SPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRG-KPPPAFE--QTQPALP 248

Query: 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
            + R ++  DEE+ T+  W + YLS  SN     ++++GV+  L++ L  S S  +LIP 
Sbjct: 249 VLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHS-SPSVLIPA 307

Query: 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGS 387
           LR++GN+V GD      VL        Q +  L+  LK+ + + +KKEA W +SNI AG+
Sbjct: 308 LRTIGNIVTGDDLQTQMVL------DQQALPCLLNLLKNNYKKSIKKEACWTISNITAGN 361

Query: 388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV 447
            +  Q +  +  +  L+ +L ++ F++KKE A+ + N     T          + +  +V
Sbjct: 362 ADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT---------HDQIKFMV 412

Query: 448 GRGCLSGFIDLVRSADIEAARLGLQFMELVL-----RGMPNHEG-----TKLVEREDGID 497
            +GC+    DL+   D++   + L+ +E +L          H G      ++++  +G++
Sbjct: 413 SQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLE 472

Query: 498 AMERFQFHENEDLRNMANGLVDKYF 522
            +E  Q H+N D+ + A  +++ ++
Sbjct: 473 KIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  205 bits (521), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 250/507 (49%), Gaps = 53/507 (10%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR  N V + K +RE  +  KR  R G  A     S S   VD++           ++ 
Sbjct: 27  RRREDNMVEIRKSKREESLMKKR--REGMQALQGFPSASAASVDKK-----------LDS 73

Query: 96  LKSAVA--YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDE 153
           LK  VA  +    A+Q  + +  + R+LLS    PPIE  + AG +P  V+ L       
Sbjct: 74  LKDMVAGVWSDDPALQ--LESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPA 131

Query: 154 QLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE 211
              EAAW LTNIA+G  + TK ++   A+P+ +  L   S   V EQ  WALGNVAG+  
Sbjct: 132 IQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDD-VREQAVWALGNVAGDSP 190

Query: 212 EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
             R+++L  GAL PL   +  + K S +R A W LSN  +G   KP     +V   L A+
Sbjct: 191 RCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRG---KPQPHFDQVKPALPAL 247

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
            R +   DEE+ T+  W + YLS  +N     ++++GV+  LVE L   +S  +LIP LR
Sbjct: 248 ERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVE-LLLHHSPSVLIPALR 306

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVE 389
           ++GN+V GD      V+  G       +  L   L   H+  +KKEA W +SNI AG+ +
Sbjct: 307 TVGNIVTGDDIQTQCVINSG------ALPCLANLLTQNHKKSIKKEACWTISNITAGNKD 360

Query: 390 HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 449
             Q +  +  ++ L+ LL  + FDIKKE A+ + N     T G        + +  LV +
Sbjct: 361 QIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNA----TSGGS-----HDQIKYLVEQ 411

Query: 450 GCLSGFIDLVRSADIEAARLGLQFMELVLR-----------GMPNHEGTKLVEREDGIDA 498
           GC+    DL+   D     + L+ +E +L+           G  N+   +L++  +G++ 
Sbjct: 412 GCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYA-QLIDDAEGLEK 470

Query: 499 MERFQFHENEDLRNMANGLVDKYFGED 525
           +E  Q H+N ++   A  +++ Y+ E+
Sbjct: 471 IENLQSHDNNEIYEKAVKILETYWLEE 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  202 bits (514), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 155/504 (30%), Positives = 250/504 (49%), Gaps = 46/504 (9%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR  N V + K +RE  +  KR  R G     +  S + +                +E 
Sbjct: 27  RRREDNMVEIRKNKREENLLKKR--REGLLQAQQFPSTAAVS----------HLDKKLET 74

Query: 96  LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL 155
           L   +A         ++    + R+LLS    PPIE  +++G +P  V+ LA     +  
Sbjct: 75  LPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQ 134

Query: 156 LEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 213
            EAAW LTNIA+G  E TK ++   ++P+ I  L   S   V EQ  WALGN+AG+  ++
Sbjct: 135 FEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDD-VREQAVWALGNIAGDSPKY 193

Query: 214 RNVLLSQGALPP-LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
           R+++L  GAL   LA+     K S +R A W LSN  +G  P+P  E  K    L  + R
Sbjct: 194 RDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRG-KPQPLFEQTK--AALPTLGR 250

Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            +   DEE+ T+  W + YLS  +N     ++++GV   LVE L  S S  +LIP LR++
Sbjct: 251 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHS-SPSVLIPALRTV 309

Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHK 391
           GN+V GD    + V++  H      +  LV  L   + + +KKEA W +SNI AG+    
Sbjct: 310 GNIVTGDDIQ-TQVMIDHHA-----LPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQI 363

Query: 392 QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451
           Q++  +  +A L++LL  + F+IKKE A+ + N     T G        + +  LV +GC
Sbjct: 364 QIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISN----ATSGGN-----HDQIKFLVSQGC 414

Query: 452 LSGFIDLVRSADIEAARLGLQFMELVL------RGMPNHEGT----KLVEREDGIDAMER 501
           +    DL+   D     + L+ +E +L      + + N EG     +L++  +G++ +E 
Sbjct: 415 IKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIEN 474

Query: 502 FQFHENEDLRNMANGLVDKYFGED 525
            Q H+N ++   A  +++ Y+ E+
Sbjct: 475 LQSHDNTEIYEKAVKILETYWLEE 498

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q19969|IMA3_CAEEL Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2

 Score =  201 bits (512), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 245/501 (48%), Gaps = 44/501 (8%)

Query: 33  VAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQ---SILEMQT 89
           +  ++R +  V++ K++RE  +  +R        D E S+      D      ++   Q+
Sbjct: 17  IGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPGPFDANLLRLTVAAAQS 76

Query: 90  SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG 149
           S   E+L                 A+++ R++LS    PPI+  + +G +PVLVQCL+  
Sbjct: 77  SDPAEQLT----------------AVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSST 120

Query: 150 SPDEQLLEAAWCLTNIAAGKQEETKALLPA--LPLLIAHLGEKSSSPVAEQCAWALGNVA 207
            P+ Q  EAAW LTNIA+G  E+T+A++ A  +PL +  L   + + V EQ  WALGN+ 
Sbjct: 121 DPNLQF-EAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLN-VCEQSVWALGNII 178

Query: 208 GEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 266
           G+G  FR+  L  G L PL + + P      +R   W + NL +  DP P+  +++   +
Sbjct: 179 GDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRT--I 236

Query: 267 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI 326
           L A+   +   D  +  +  W + YL+   N    +++++ V+  LV  L   + +++  
Sbjct: 237 LPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVD-VKVQT 295

Query: 327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386
             LR++GN+V G       VL  G      V+  +   L      + KEA W +SNI AG
Sbjct: 296 AALRAVGNIVTGTDEQTQLVLDSG------VLRFMPGLLAHYKEKINKEAVWFVSNITAG 349

Query: 387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 446
           + +  Q +  +  + +++HLL    F  +KE A+ + N+ +S     G+P  +++    +
Sbjct: 350 NQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTIS-----GRPNQVEQ----M 400

Query: 447 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLR--GMPNHEGTKLVEREDGIDAMERFQF 504
           V  G L  F  ++   D +  ++ L  +  +L+  G    + T  +E   G+D +E  Q 
Sbjct: 401 VKLGVLRPFCAMLSCTDSQIIQVVLDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQN 460

Query: 505 HENEDLRNMANGLVDKYFGED 525
           HENED+  +A  ++D +F  D
Sbjct: 461 HENEDIYKLAFEIIDNFFSSD 481

Essential gene for embryonic and larval development. Required for oogenic development, ima-1 and ima-2 cannot functionally compensate for loss of ima-3.

Caenorhabditis elegans (taxid: 6239)

>sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1

 Score =  199 bits (506), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 251/511 (49%), Gaps = 61/511 (11%)

Query: 37  RRRQNAVTV---GKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAV 93
           RR++N V V     +R E L++ + + +     D ++  D  +             ++++
Sbjct: 26  RRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQ------------NTSL 73

Query: 94  EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDE 153
           E +    +   +G    +++A++  R+LLS    PPI+  +K+G +P+LV CL       
Sbjct: 74  EAIVQNASSDNQGI---QLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPS 130

Query: 154 QLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE 211
              EAAW LTNIA+G  E+T+A++   A+PL +  L     + V EQ  WALGN+ G+G 
Sbjct: 131 LQFEAAWALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQN-VCEQAVWALGNIIGDGP 189

Query: 212 EFRNVLLSQGALPPLARMMLPNKGST-VRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
           + R+ ++S G + PL   + P+   T +R   W + NL +  DP P  E I+   +L A+
Sbjct: 190 QCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQ--EILPAL 247

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
              +   D  +  +  W + YL+   N    +++ SG++  LV  L +   +++    LR
Sbjct: 248 CVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVP-LLSHQEVKVQTAALR 306

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC---------LKSEHRVLKKEAAWVLS 381
           ++GN+V G               TD+   V++ C         L      + KEA W LS
Sbjct: 307 AVGNIVTG---------------TDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLS 351

Query: 382 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE 441
           NI AG+ +  Q +  +  + +++HLL    F  +KE A+ + NL +S     G+    ++
Sbjct: 352 NITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTIS-----GR----KD 402

Query: 442 HLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT--KLVEREDGIDAM 499
            +  L+ +  +  F +L+   D +  ++ L  +  +L+   +   T   L+E   G++ +
Sbjct: 403 QVAYLIQQNVIPPFCNLLTVKDAQVVQVVLDGLSNILKMAEDQAETIANLIEECGGLEKI 462

Query: 500 ERFQFHENEDLRNMANGLVDKYFGEDYGLDE 530
           E+ Q HENED+  +A  ++D++F  D  +DE
Sbjct: 463 EQLQNHENEDIYKLAYEIIDQFFSSD-DIDE 492

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
224140169	522	predicted protein [Populus trichocarpa]	0.945	0.959	0.854	0.0
225439906	517	PREDICTED: importin subunit alpha-2 [Vit	0.943	0.967	0.838	0.0
255568398	517	Importin alpha-2 subunit, putative [Rici	0.937	0.961	0.854	0.0
147784526	530	hypothetical protein VITISV_032422 [Viti	0.933	0.933	0.834	0.0
356548222	517	PREDICTED: importin subunit alpha-2-like	0.935	0.959	0.798	0.0
356548224	522	PREDICTED: importin subunit alpha-2-like	0.945	0.959	0.788	0.0
145357578	519	importin alpha isoform 9 [Arabidopsis th	0.945	0.965	0.768	0.0
297810383	519	binding protein [Arabidopsis lyrata subs	0.945	0.965	0.768	0.0
449448830	518	PREDICTED: importin subunit alpha-2-like	0.945	0.967	0.772	0.0
449503443	522	PREDICTED: importin subunit alpha-2-like	0.945	0.959	0.766	0.0

>gi|224140169|ref|XP_002323457.1| predicted protein [Populus trichocarpa] gi|222868087|gb|EEF05218.1| predicted protein [Populus trichocarpa]

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/502 (85%), Positives = 462/502 (92%), Gaps = 1/502 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSAD-GEVSSDSDMMVDEEQSILEMQ 88
           VGNVAA RRRQNAV VGKERRESLVRAKRLCRVG S D  ++S ++DM++DEEQSILE Q
Sbjct: 18  VGNVAAHRRRQNAVAVGKERRESLVRAKRLCRVGPSCDDSDISIENDMIIDEEQSILEAQ 77

Query: 89  TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF 148
           TSSAVEELKSAV++ GKGAMQK V ALRE+RRLLS+ EFPP+E A+KAGAIP+LVQCL+F
Sbjct: 78  TSSAVEELKSAVSFQGKGAMQKLVGALREMRRLLSKSEFPPVEAAIKAGAIPLLVQCLSF 137

Query: 149 GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG 208
           GSPDEQLLEAAWCLTNIAAGK EETKALLPALPLLIAHLGEKSS PVAEQCAWALGNVAG
Sbjct: 138 GSPDEQLLEAAWCLTNIAAGKPEETKALLPALPLLIAHLGEKSSLPVAEQCAWALGNVAG 197

Query: 209 EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
           EGEE R+VLL QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD K ATELI+VDG+LD
Sbjct: 198 EGEELRSVLLCQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDHKAATELIRVDGVLD 257

Query: 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
           AILRHL++ADEEL TEVAWVVVYLSALSNVATS+LVKS  LQLLV+RLA+SNSLQLLIPV
Sbjct: 258 AILRHLRKADEELATEVAWVVVYLSALSNVATSMLVKSDALQLLVQRLASSNSLQLLIPV 317

Query: 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388
           LRSLGN++AGDS TI  VL+PG  ITD VI VLVKCLKSEHRVLKKEAAWVLSNIAAGS+
Sbjct: 318 LRSLGNVIAGDSHTIVAVLLPGCEITDNVIEVLVKCLKSEHRVLKKEAAWVLSNIAAGSI 377

Query: 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448
           EHKQLI+ SEA  LLL LLST+PFDI+KEVAYVLGNLCV+PTEG+GKP LI EHLVSLVG
Sbjct: 378 EHKQLIYYSEAAPLLLRLLSTAPFDIRKEVAYVLGNLCVAPTEGDGKPNLISEHLVSLVG 437

Query: 449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENE 508
           RGCL GFIDLVRSAD EAARLGLQFMELVLRGMPN EG KLVEREDGIDAMERFQFHENE
Sbjct: 438 RGCLPGFIDLVRSADTEAARLGLQFMELVLRGMPNGEGPKLVEREDGIDAMERFQFHENE 497

Query: 509 DLRNMANGLVDKYFGEDYGLDE 530
           DLRN+AN LVD+YFGEDYGLDE
Sbjct: 498 DLRNLANALVDRYFGEDYGLDE 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439906|ref|XP_002279724.1| PREDICTED: importin subunit alpha-2 [Vitis vinifera] gi|297741569|emb|CBI32701.3| unnamed protein product [Vitis vinifera]

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/501 (83%), Positives = 453/501 (90%), Gaps = 1/501 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQT 89
           VGNVAA RRRQ A+TVGKERRE+LVR KRLCRVG S D +V  D DMM+DEEQSILE QT
Sbjct: 18  VGNVAANRRRQQAITVGKERREALVRTKRLCRVGISGDSDVPVDGDMMIDEEQSILETQT 77

Query: 90  SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG 149
           SSAVEELKS V Y GKGAMQKRV+ALR+LRRLLSR EFPPIE ALKAGA+ VLVQCL+FG
Sbjct: 78  SSAVEELKSTVIYQGKGAMQKRVSALRDLRRLLSRSEFPPIEAALKAGAVSVLVQCLSFG 137

Query: 150 SPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209
           SPDEQLLEAAWCLTNIAAGK EETKAL+PALPLLIAHLGEKSS PVAEQCAWALGNVAGE
Sbjct: 138 SPDEQLLEAAWCLTNIAAGKPEETKALVPALPLLIAHLGEKSSPPVAEQCAWALGNVAGE 197

Query: 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 269
           GEE RN+LLSQGALPPLARMM+PNKGSTVRTAAWALSNLIKGPDPK A+ELI++DG+LDA
Sbjct: 198 GEELRNILLSQGALPPLARMMVPNKGSTVRTAAWALSNLIKGPDPKAASELIQIDGVLDA 257

Query: 270 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 329
           ILRHL++ DEEL TEVAWVVVYLSALS+ ATS+LVKS +LQLLVERLATSNSLQLLIPVL
Sbjct: 258 ILRHLRKGDEELATEVAWVVVYLSALSDTATSILVKSNLLQLLVERLATSNSLQLLIPVL 317

Query: 330 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 389
           RSLGNL AG +S  + +LV GH +TD  IA LVKCL SEHRVLKKEAAWVLSNIAAGS+E
Sbjct: 318 RSLGNLGAG-ASHATCILVVGHEMTDNFIAALVKCLGSEHRVLKKEAAWVLSNIAAGSIE 376

Query: 390 HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 449
           HK+LI+SSEA+ LLL LLST+PFDI+KEVAY LGNLCV  +EG GKP LI EHLVSLVGR
Sbjct: 377 HKKLIYSSEAVPLLLRLLSTAPFDIRKEVAYALGNLCVVSSEGGGKPALILEHLVSLVGR 436

Query: 450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENED 509
           GCL GFIDLVRSAD EAA+LGLQFMELVLRGMPN EG KLVEREDGIDAMERFQFHENED
Sbjct: 437 GCLLGFIDLVRSADTEAAKLGLQFMELVLRGMPNGEGPKLVEREDGIDAMERFQFHENED 496

Query: 510 LRNMANGLVDKYFGEDYGLDE 530
           LRNMANGLVD YFGE+YGLDE
Sbjct: 497 LRNMANGLVDTYFGEEYGLDE 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568398|ref|XP_002525173.1| Importin alpha-2 subunit, putative [Ricinus communis] gi|223535470|gb|EEF37139.1| Importin alpha-2 subunit, putative [Ricinus communis]

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/501 (85%), Positives = 464/501 (92%), Gaps = 4/501 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQT 89
           VGNVAAQ+R+QNAV VGKERRESLVRAKRLCRVGTS D    SDS+M++DEEQSIL+ QT
Sbjct: 18  VGNVAAQKRKQNAVAVGKERRESLVRAKRLCRVGTSGD----SDSEMIIDEEQSILDAQT 73

Query: 90  SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG 149
           SSAVEELKSAVA+ GKGAMQK+V ALRELRRLLSR EFPPIE A+KAGAI +LVQCL+FG
Sbjct: 74  SSAVEELKSAVAFQGKGAMQKKVGALRELRRLLSRSEFPPIEAAIKAGAIILLVQCLSFG 133

Query: 150 SPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209
           SPDEQLLEAAWCLTNIAAGK EETKALLPALPLLIAHLGE+SSSPVAEQCAWALGNVAGE
Sbjct: 134 SPDEQLLEAAWCLTNIAAGKPEETKALLPALPLLIAHLGERSSSPVAEQCAWALGNVAGE 193

Query: 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 269
           GE+ RNVLLSQGALPPLARMMLPN+GSTVRTAAWALSNLIKGPDPK ATELI+VDG+LDA
Sbjct: 194 GEDLRNVLLSQGALPPLARMMLPNRGSTVRTAAWALSNLIKGPDPKAATELIRVDGVLDA 253

Query: 270 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 329
           I+RHL++ADEEL TEVAW VVYLSALSNVATS+LVKS VLQLL++RLATSNSLQLLIPVL
Sbjct: 254 IVRHLRKADEELATEVAWAVVYLSALSNVATSMLVKSDVLQLLIQRLATSNSLQLLIPVL 313

Query: 330 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 389
           RSLGNL+AGDS TIS VL+PG  ITD +IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE
Sbjct: 314 RSLGNLIAGDSHTISAVLLPGIEITDSIIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 373

Query: 390 HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 449
           HKQLI+ SEA+ LLL LLST+PFD++KEVAYVLGNLCV+P EG GKP LI EHLVSLV R
Sbjct: 374 HKQLIYCSEAVPLLLRLLSTAPFDLRKEVAYVLGNLCVAPAEGTGKPDLILEHLVSLVSR 433

Query: 450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENED 509
           GCL GFIDLVRS D EAARLGLQF+ELVLRGMPN EG KLVE+E+GI+AMERFQFHENED
Sbjct: 434 GCLPGFIDLVRSVDTEAARLGLQFIELVLRGMPNGEGPKLVEQENGIEAMERFQFHENED 493

Query: 510 LRNMANGLVDKYFGEDYGLDE 530
           LRNMANGLVD+YFGEDYGL E
Sbjct: 494 LRNMANGLVDRYFGEDYGLTE 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784526|emb|CAN61727.1| hypothetical protein VITISV_032422 [Vitis vinifera]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/500 (83%), Positives = 448/500 (89%), Gaps = 5/500 (1%)

Query: 31  GNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTS 90
           GNVAA RRRQ A+TVGKERRE+LVR KRLCRVG S D +V  D DMM+DEEQSILE QTS
Sbjct: 36  GNVAANRRRQQAITVGKERREALVRTKRLCRVGISGDSDVPVDGDMMIDEEQSILETQTS 95

Query: 91  SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS 150
           SAVEELKS V Y GKGAMQKRV+ALR+LRRLLSR EFPPIE ALKAGA+ VLVQCL+FGS
Sbjct: 96  SAVEELKSTVIYQGKGAMQKRVSALRDLRRLLSRSEFPPIEAALKAGAVSVLVQCLSFGS 155

Query: 151 PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210
           PDEQLLEAAWCLTNIAAGK EETKALLPALPLLIAHLGEKSS PVAEQCAWALGNVAGEG
Sbjct: 156 PDEQLLEAAWCLTNIAAGKPEETKALLPALPLLIAHLGEKSSPPVAEQCAWALGNVAGEG 215

Query: 211 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
           EE RN+LLSQGALPPLARMM+PNKGSTVRTAAWALSNLIKGPDPK A+ELI++DG+LDAI
Sbjct: 216 EELRNILLSQGALPPLARMMVPNKGSTVRTAAWALSNLIKGPDPKAASELIQIDGVLDAI 275

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
           LRHL++ DEEL TEVAWVVVYLSALS+ ATS+LVKS +LQLLVERLATSNSLQLLIPVLR
Sbjct: 276 LRHLRKGDEELATEVAWVVVYLSALSDTATSILVKSBLLQLLVERLATSNSLQLLIPVLR 335

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 390
           SLGNL AG +S  +  LV GH +T    A LVKCL SEHRVLKKEAAWVLSNIAAGS+EH
Sbjct: 336 SLGNLGAG-ASHATCXLVVGHEMT----AALVKCLGSEHRVLKKEAAWVLSNIAAGSIEH 390

Query: 391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
           K+LI+SSEA+ LLL LLST+PFDI+KEVAY LGNLCV  +EG GKP LI EHLVSLVGRG
Sbjct: 391 KKLIYSSEAVPLLLRLLSTAPFDIRKEVAYALGNLCVVSSEGGGKPALILEHLVSLVGRG 450

Query: 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL 510
           CL GFIDLVRSAD EAA+LGLQFMELVLRGMPN EG KLVEREDGIDAMERFQFHEN DL
Sbjct: 451 CLPGFIDLVRSADTEAAKLGLQFMELVLRGMPNGEGPKLVEREDGIDAMERFQFHENXDL 510

Query: 511 RNMANGLVDKYFGEDYGLDE 530
           RNMANGLVD YFGE+YGLDE
Sbjct: 511 RNMANGLVDTYFGEEYGLDE 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548222|ref|XP_003542502.1| PREDICTED: importin subunit alpha-2-like isoform 1 [Glycine max]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/505 (79%), Positives = 448/505 (88%), Gaps = 9/505 (1%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADG----EVSSDSDMMVDEEQSIL 85
           VGN AA RRRQ+AVTVGKERRESL+RAKR CRVG         EVS DSDM+++EEQSIL
Sbjct: 18  VGNAAASRRRQHAVTVGKERRESLMRAKRFCRVGIDGGDGGDGEVSVDSDMLIEEEQSIL 77

Query: 86  EMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQC 145
           E QTS+AVE LKSA+A+ GKGA++KRV AL+ELRRLLSR EFPP+E+A+ AGA+P+LVQC
Sbjct: 78  ESQTSAAVENLKSAIAFQGKGAVKKRVGALQELRRLLSRSEFPPVESAINAGAVPLLVQC 137

Query: 146 LAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGN 205
           L+FGSPDEQLLEAAWCLTNIAAG  EETKALLPALPLLIAHLGEKS  PVAEQCAWALGN
Sbjct: 138 LSFGSPDEQLLEAAWCLTNIAAGNPEETKALLPALPLLIAHLGEKSYPPVAEQCAWALGN 197

Query: 206 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 265
           VAGEGEE RNVLL QGAL PLARMMLPN+GSTVRTAAWALSNLIKGPDPK ATEL+++DG
Sbjct: 198 VAGEGEELRNVLLVQGALLPLARMMLPNRGSTVRTAAWALSNLIKGPDPKAATELVRIDG 257

Query: 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 325
           +LDAI+R LK+AD+EL TEVAWVVVYLSALSN+ATS+LVKS VL+LLV +LATSNSLQL+
Sbjct: 258 VLDAIIRQLKKADDELATEVAWVVVYLSALSNIATSMLVKSNVLELLVHKLATSNSLQLM 317

Query: 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
           IPVLRSLGNL+A DS  I     PG GITD VI VLVKCL  E+RVLKKEA+WVLSNIAA
Sbjct: 318 IPVLRSLGNLIASDSHAI-----PGLGITDNVIQVLVKCLNCENRVLKKEASWVLSNIAA 372

Query: 386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445
           GSVEHKQLI+SSEA+ +LL L S +PFDI+KEVAYVLGNLCVSPT+G+ KP LI EHLVS
Sbjct: 373 GSVEHKQLIYSSEAVPVLLRLFSAAPFDIRKEVAYVLGNLCVSPTKGDDKPSLILEHLVS 432

Query: 446 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH 505
           LV +GCL GFIDLVRSADIEAARLGLQF+ELVLRGMPN +G KLVE+EDGI+AMERFQFH
Sbjct: 433 LVEKGCLPGFIDLVRSADIEAARLGLQFIELVLRGMPNGKGPKLVEQEDGIEAMERFQFH 492

Query: 506 ENEDLRNMANGLVDKYFGEDYGLDE 530
           ENEDLR MAN LVDKYFGEDYGLDE
Sbjct: 493 ENEDLRTMANTLVDKYFGEDYGLDE 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548224|ref|XP_003542503.1| PREDICTED: importin subunit alpha-2-like isoform 2 [Glycine max]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/505 (78%), Positives = 445/505 (88%), Gaps = 4/505 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADG----EVSSDSDMMVDEEQSIL 85
           VGN AA RRRQ+AVTVGKERRESL+RAKR CRVG         EVS DSDM+++EEQSIL
Sbjct: 18  VGNAAASRRRQHAVTVGKERRESLMRAKRFCRVGIDGGDGGDGEVSVDSDMLIEEEQSIL 77

Query: 86  EMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQC 145
           E QTS+AVE LKSA+A+ GKGA++KRV AL+ELRRLLSR EFPP+E+A+ AGA+P+LVQC
Sbjct: 78  ESQTSAAVENLKSAIAFQGKGAVKKRVGALQELRRLLSRSEFPPVESAINAGAVPLLVQC 137

Query: 146 LAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGN 205
           L+FGSPDEQLLEAAWCLTNIAAG  EETKALLPALPLLIAHLGEKS  PVAEQCAWALGN
Sbjct: 138 LSFGSPDEQLLEAAWCLTNIAAGNPEETKALLPALPLLIAHLGEKSYPPVAEQCAWALGN 197

Query: 206 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 265
           VAGEGEE RNVLL QGAL PLARMMLPN+GSTVRTAAWALSNLIKGPDPK ATEL+++DG
Sbjct: 198 VAGEGEELRNVLLVQGALLPLARMMLPNRGSTVRTAAWALSNLIKGPDPKAATELVRIDG 257

Query: 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 325
           +LDAI+R LK+AD+EL TEVAWVVVYLSALSN+ATS+LVKS VL+LLV +LATSNSLQL+
Sbjct: 258 VLDAIIRQLKKADDELATEVAWVVVYLSALSNIATSMLVKSNVLELLVHKLATSNSLQLM 317

Query: 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
           IPVLRSLGNL+A DS  I  +       +D VI VLVKCL  E+RVLKKEA+WVLSNIAA
Sbjct: 318 IPVLRSLGNLIASDSHAILLISDFTMTFSDNVIQVLVKCLNCENRVLKKEASWVLSNIAA 377

Query: 386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445
           GSVEHKQLI+SSEA+ +LL L S +PFDI+KEVAYVLGNLCVSPT+G+ KP LI EHLVS
Sbjct: 378 GSVEHKQLIYSSEAVPVLLRLFSAAPFDIRKEVAYVLGNLCVSPTKGDDKPSLILEHLVS 437

Query: 446 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH 505
           LV +GCL GFIDLVRSADIEAARLGLQF+ELVLRGMPN +G KLVE+EDGI+AMERFQFH
Sbjct: 438 LVEKGCLPGFIDLVRSADIEAARLGLQFIELVLRGMPNGKGPKLVEQEDGIEAMERFQFH 497

Query: 506 ENEDLRNMANGLVDKYFGEDYGLDE 530
           ENEDLR MAN LVDKYFGEDYGLDE
Sbjct: 498 ENEDLRTMANTLVDKYFGEDYGLDE 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145357578|ref|NP_195927.2| importin alpha isoform 9 [Arabidopsis thaliana] gi|332003170|gb|AED90553.1| importin alpha isoform 9 [Arabidopsis thaliana]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/502 (76%), Positives = 442/502 (88%), Gaps = 1/502 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVS-SDSDMMVDEEQSILEMQ 88
           VGNVA QRRR+ AVTV KERRE LVRAKRLCRVGT+ D E +  +++MMVDEEQ ILE Q
Sbjct: 18  VGNVAGQRRRKQAVTVAKERRELLVRAKRLCRVGTNGDVEDALVENEMMVDEEQPILEAQ 77

Query: 89  TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF 148
            S +VEELKSAV Y GKGAMQKRV ALRELRRLLS+ EFPP+E AL+AGAIP+LVQCL+F
Sbjct: 78  ASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPPVEAALRAGAIPLLVQCLSF 137

Query: 149 GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG 208
           GSPDEQLLE+AWCLTNIAAGK EETKALLPALPLLIAHLGEKSS+PVAEQCAWA+GNVAG
Sbjct: 138 GSPDEQLLESAWCLTNIAAGKPEETKALLPALPLLIAHLGEKSSAPVAEQCAWAIGNVAG 197

Query: 209 EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
           EGE+ RNVLLSQGALPPLARM+ P+KGSTVRTAAWALSNLIKGP+ K A +L+K+DG+LD
Sbjct: 198 EGEDLRNVLLSQGALPPLARMIFPDKGSTVRTAAWALSNLIKGPESKAAAQLVKIDGILD 257

Query: 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
           AILRHLK+ DEE  TE+AW++VYLSALS++ATS+L+K G+LQLL++RLATS+SLQLLIPV
Sbjct: 258 AILRHLKKTDEETATEIAWIIVYLSALSDIATSMLLKGGILQLLIDRLATSSSLQLLIPV 317

Query: 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388
           LRSLGN VA D   +  +L+      + +I VL KCL+SEHRVLKKEAAWVLSNIAAGS+
Sbjct: 318 LRSLGNFVAVDPKAVLTILIREQNTEESIIGVLAKCLRSEHRVLKKEAAWVLSNIAAGSI 377

Query: 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448
           EHK++IHS+E + LLL +LSTSPFDI+KEVAYVLGNLCV   EG+ KP++IQEHLVS+V 
Sbjct: 378 EHKRMIHSTEVMPLLLRILSTSPFDIRKEVAYVLGNLCVESAEGDRKPRIIQEHLVSIVS 437

Query: 449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENE 508
            GCL GFI+LVRS DIEAARLGLQF+ELVLRGMPN EG KLVE EDGIDAMERFQFHENE
Sbjct: 438 GGCLRGFIELVRSPDIEAARLGLQFIELVLRGMPNGEGPKLVEGEDGIDAMERFQFHENE 497

Query: 509 DLRNMANGLVDKYFGEDYGLDE 530
           +LR MAN LVDKYFGEDYG+DE
Sbjct: 498 ELRVMANSLVDKYFGEDYGIDE 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810383|ref|XP_002873075.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297318912|gb|EFH49334.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/502 (76%), Positives = 437/502 (87%), Gaps = 1/502 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVS-SDSDMMVDEEQSILEMQ 88
           VG+VA QRRRQ AVTV KERRE LVRAKRLCRVGT+ D E S  +++MM+DEEQ ILE Q
Sbjct: 18  VGHVAGQRRRQQAVTVAKERRELLVRAKRLCRVGTNGDVEDSLVENEMMIDEEQPILEAQ 77

Query: 89  TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF 148
            S +VEELKSAV Y GKGAMQKRV ALRELRR+LS+ EFPP+E AL AGAIP+LVQCL+F
Sbjct: 78  ASKSVEELKSAVQYQGKGAMQKRVTALRELRRILSKSEFPPVEAALSAGAIPLLVQCLSF 137

Query: 149 GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG 208
           GSPDEQLLE+AWCLTNIAAGK EETKALLPALPLLIAHLGEKSS+PVAEQCAWA+GNVAG
Sbjct: 138 GSPDEQLLESAWCLTNIAAGKPEETKALLPALPLLIAHLGEKSSAPVAEQCAWAIGNVAG 197

Query: 209 EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
           EGE+ RNVLLSQGALP LARM+ P+KGSTVRTAAWALSNLIKGP+ K A +L+KVDG+LD
Sbjct: 198 EGEDLRNVLLSQGALPSLARMIFPDKGSTVRTAAWALSNLIKGPESKAAAQLVKVDGILD 257

Query: 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
           AI RHLK+ DEE  TE+AW++VYLSALS++ATS+L+K G+LQLL+ERLA SNSLQLLIPV
Sbjct: 258 AIFRHLKKTDEETATEIAWIIVYLSALSDIATSMLLKGGILQLLIERLANSNSLQLLIPV 317

Query: 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388
           LRS+GN VA D   I  +L+      + +I VL KCL+SEHRVLKKEAAWVLSNIAAGS+
Sbjct: 318 LRSVGNFVAVDPKAILTILIREQNTEESIIGVLAKCLRSEHRVLKKEAAWVLSNIAAGSI 377

Query: 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448
           EHK++IHS+E + LLL LLSTSPFDI+KEVAYVLGNLCV   EG+ KP +IQEHLVS+V 
Sbjct: 378 EHKRMIHSTEVMPLLLRLLSTSPFDIRKEVAYVLGNLCVESAEGDRKPGIIQEHLVSIVR 437

Query: 449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENE 508
            GCL GFI+LVRS DIEAARLGLQF+ELVLRGMPN EG KLVE EDGIDAMERFQFHENE
Sbjct: 438 GGCLPGFIELVRSPDIEAARLGLQFIELVLRGMPNGEGPKLVEGEDGIDAMERFQFHENE 497

Query: 509 DLRNMANGLVDKYFGEDYGLDE 530
           +LR MAN LVDKYFGEDYG+DE
Sbjct: 498 ELRVMANSLVDKYFGEDYGIDE 519

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448830|ref|XP_004142168.1| PREDICTED: importin subunit alpha-2-like [Cucumis sativus]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/501 (77%), Positives = 451/501 (90%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQT 89
           VG+VAA RRRQ+A+ VGKERR+ LVRAKR CR+G         D++M++DEE SILE+QT
Sbjct: 18  VGSVAANRRRQHAIAVGKERRDLLVRAKRFCRIGIGDGDGDGVDNEMIMDEELSILEVQT 77

Query: 90  SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG 149
           SSAV+ELKSAVAY GKGAMQKR++ALRELRRLLSR EFPP+ETALKAGA+ +LVQCL+FG
Sbjct: 78  SSAVDELKSAVAYQGKGAMQKRIHALRELRRLLSRSEFPPVETALKAGAVSLLVQCLSFG 137

Query: 150 SPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 209
           SPDEQLLEAAWCLTNI AGK EETK+LLPA+PLLIAHLGE+SS  VAEQCAWALGNVAGE
Sbjct: 138 SPDEQLLEAAWCLTNIGAGKPEETKSLLPAIPLLIAHLGERSSLLVAEQCAWALGNVAGE 197

Query: 210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 269
            +E RN+LLSQGAL PLARM+LPNKGS+V+TAAWALSNLIKGPD + ATELI++DG+LDA
Sbjct: 198 EKELRNILLSQGALLPLARMLLPNKGSSVKTAAWALSNLIKGPDSRAATELIRIDGVLDA 257

Query: 270 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 329
           I+RHL++AD+EL TEVAWV+VYLSALS+VA S+LVKS V+QLLVERL+TSNSLQLLIPVL
Sbjct: 258 IIRHLRKADDELATEVAWVIVYLSALSDVAISILVKSEVVQLLVERLSTSNSLQLLIPVL 317

Query: 330 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 389
           RSLGNLVA DS TIS +L+PG  IT  V+ VL+KCLKSEHRVLKKEA+WVLSNIAAGS+E
Sbjct: 318 RSLGNLVAVDSHTISAILIPGSEITGSVLEVLIKCLKSEHRVLKKEASWVLSNIAAGSME 377

Query: 390 HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 449
           HKQLI++S+ + LL+ LLS++PFD++KEVAYVLGNLCV+P + +GK KL+ E+LVSLVGR
Sbjct: 378 HKQLIYTSDVVPLLIRLLSSAPFDVRKEVAYVLGNLCVAPNDSDGKAKLLVENLVSLVGR 437

Query: 450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENED 509
           GCL GFIDLVRSAD EAARLG QF+E+VLRGMPN +G +LVEREDGI+AMERFQFHENE+
Sbjct: 438 GCLVGFIDLVRSADTEAARLGFQFLEMVLRGMPNGDGPRLVEREDGIEAMERFQFHENEE 497

Query: 510 LRNMANGLVDKYFGEDYGLDE 530
           LRNMAN LVDKYFGEDYGLDE
Sbjct: 498 LRNMANCLVDKYFGEDYGLDE 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503443|ref|XP_004162005.1| PREDICTED: importin subunit alpha-2-like [Cucumis sativus]

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/505 (76%), Positives = 451/505 (89%), Gaps = 4/505 (0%)

Query: 30  VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS----DSDMMVDEEQSIL 85
           VG+VAA RRRQ+A+ VGKERR+ LVRAKR CR+G             D++M++DEE SIL
Sbjct: 18  VGSVAANRRRQHAIAVGKERRDLLVRAKRFCRIGIGDGDGDGDGDGVDNEMIMDEELSIL 77

Query: 86  EMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQC 145
           E+QTSSAV+ELKSAVAY GKGAMQKR++ALRELRRLLSR EFPP+ETALKAGA+ +LVQC
Sbjct: 78  EVQTSSAVDELKSAVAYQGKGAMQKRIHALRELRRLLSRSEFPPVETALKAGAVSLLVQC 137

Query: 146 LAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGN 205
           L+FGSPDEQLLEAAWCLTNI AGK EETK+LLPA+PLLIAHLGE+SS  VAEQCAWALGN
Sbjct: 138 LSFGSPDEQLLEAAWCLTNIGAGKPEETKSLLPAIPLLIAHLGERSSLLVAEQCAWALGN 197

Query: 206 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 265
           VAGE +E RN+LLSQGAL PLARM+LPNKGS+V+TAAWALSNLIKGPD + ATELI++DG
Sbjct: 198 VAGEEKELRNILLSQGALLPLARMLLPNKGSSVKTAAWALSNLIKGPDSRAATELIRIDG 257

Query: 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 325
           +LDAI+RHL++AD+EL TEVAWV+VYLSALS+VA S+LVKS V+QLLVERL+TSNSLQLL
Sbjct: 258 VLDAIIRHLRKADDELATEVAWVIVYLSALSDVAISILVKSEVVQLLVERLSTSNSLQLL 317

Query: 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
           IPVLRSLGNLVA DS TIS +L+PG  IT  V+ VL+KCLKSEHRVLKKEA+WVLSNIAA
Sbjct: 318 IPVLRSLGNLVAVDSHTISAILIPGSEITGSVLEVLIKCLKSEHRVLKKEASWVLSNIAA 377

Query: 386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445
           GS+EHKQLI++S+ + LL+ LLS++PFD++KEVAYVLGNLCV+P + +GK KL+ E+LVS
Sbjct: 378 GSMEHKQLIYTSDVVPLLIRLLSSAPFDVRKEVAYVLGNLCVAPNDSDGKAKLLVENLVS 437

Query: 446 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH 505
           LVGRGCL GFIDLVRSAD EAARLG QF+E+VLRGMPN +G +LVEREDGI+AMERFQFH
Sbjct: 438 LVGRGCLVGFIDLVRSADTEAARLGFQFLEMVLRGMPNGDGPRLVEREDGIEAMERFQFH 497

Query: 506 ENEDLRNMANGLVDKYFGEDYGLDE 530
           ENE+LRNMAN LVDKYFGEDYGLDE
Sbjct: 498 ENEELRNMANCLVDKYFGEDYGLDE 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:2143423	519	IMPA-9 "importin alpha isoform	0.945	0.965	0.707	1.9e-186
SGD|S000005133	542	SRP1 "Karyopherin alpha homolo	0.890	0.870	0.283	6e-48
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.873	0.858	0.294	2.3e-46
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.875	0.867	0.296	3.8e-46
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.888	0.875	0.297	2.1e-45
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.860	0.857	0.304	2.1e-45
CGD|CAL0000730	543	orf19.5682 [Candida albicans (	0.894	0.872	0.274	5.6e-45
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.864	0.887	0.295	1.2e-44
GENEDB_PFALCIPARUM|PF08_0087	545	PF08_0087 "importin alpha, put	0.884	0.860	0.284	3.9e-44
UNIPROTKB|Q8IAW0	545	PF08_0087 "Importin subunit al	0.884	0.860	0.284	3.9e-44

TAIR|locus:2143423 IMPA-9 "importin alpha isoform 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1808 (641.5 bits), Expect = 1.9e-186, P = 1.9e-186
 Identities = 355/502 (70%), Positives = 406/502 (80%)

Query:    30 VGNVAAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSS-DSDMMVDEEQSILEMQ 88
             VGNVA QRRR+ AVTV KERRE LVRAKRLCRVGT+ D E +  +++MMVDEEQ ILE Q
Sbjct:    18 VGNVAGQRRRKQAVTVAKERRELLVRAKRLCRVGTNGDVEDALVENEMMVDEEQPILEAQ 77

Query:    89 TSSAVEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAF 148
              S +VEELKSAV Y GKGAMQKRV A             PP+E AL+AGAIP+LVQCL+F
Sbjct:    78 ASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPPVEAALRAGAIPLLVQCLSF 137

Query:   149 GSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXIAHLGEKSSSPVAEQCAWALGNVAG 208
             GSPDEQLLE+AWCLTNIAAGK EETK         IAHLGEKSS+PVAEQCAWA+GNVAG
Sbjct:   138 GSPDEQLLESAWCLTNIAAGKPEETKALLPALPLLIAHLGEKSSAPVAEQCAWAIGNVAG 197

Query:   209 EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
             EGE+ RNVLLSQGALPPLARM+ P+KGSTVRTAAWALSNLIKGP+ K A +L+K+DG+LD
Sbjct:   198 EGEDLRNVLLSQGALPPLARMIFPDKGSTVRTAAWALSNLIKGPESKAAAQLVKIDGILD 257

Query:   269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
             AILRHLK+ DEE  TE+AW++VYLSALS++ATS+L+K G+LQLL++RLATS+SLQLLIPV
Sbjct:   258 AILRHLKKTDEETATEIAWIIVYLSALSDIATSMLLKGGILQLLIDRLATSSSLQLLIPV 317

Query:   329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388
             LRSLGN VA D   +  +L+      + +I VL KCL+SEHRVLKKEAAWVLSNIAAGS+
Sbjct:   318 LRSLGNFVAVDPKAVLTILIREQNTEESIIGVLAKCLRSEHRVLKKEAAWVLSNIAAGSI 377

Query:   389 EHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448
             EHK+                  PFDI+KEVAYVLGNLCV   EG+ KP++IQEHLVS+V 
Sbjct:   378 EHKRMIHSTEVMPLLLRILSTSPFDIRKEVAYVLGNLCVESAEGDRKPRIIQEHLVSIVS 437

Query:   449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENE 508
              GCL GFI+LVRS DIEAARLGLQF+ELVLRGMPN EG KLVE EDGIDAMERFQFHENE
Sbjct:   438 GGCLRGFIELVRSPDIEAARLGLQFIELVLRGMPNGEGPKLVEGEDGIDAMERFQFHENE 497

Query:   509 DLRNMANGLVDKYFGEDYGLDE 530
             +LR MAN LVDKYFGEDYG+DE
Sbjct:   498 ELRVMANSLVDKYFGEDYGIDE 519

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

SGD|S000005133 SRP1 "Karyopherin alpha homolog" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 144/508 (28%), Positives = 237/508 (46%)

Query:    36 QRRRQNAVTVGKERR-ESLVRAKRLCRVGTSADGEVSSDSDMMVDEE-QSILEMQTSSAV 93
             +RR    V + K +R E+L + +        AD +   +S +  D++  S L+ +     
Sbjct:    34 RRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT 93

Query:    94 EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
             ++L S         MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct:    94 QQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query:   154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
               LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct:   147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query:   213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
             +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct:   207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 264

Query:   273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
              +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct:   265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 323

Query:   333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
             GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct:   324 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377

Query:   393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
                                +  KKE  + + N   + + G  +P +I+ +LVS   +GC+
Sbjct:   378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGLQRPDIIR-YLVS---QGCI 430

Query:   453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
                 DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct:   431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490

Query:   504 FHENEDLRNMANGLVDKYFGEDY-GLDE 530
              +EN+ +   A  +++ YFGE+   +DE
Sbjct:   491 QNENDKIYEKAYKIIETYFGEEEDAVDE 518

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006606 "protein import into nucleus" evidence=IEA;IMP

GO:0008565 "protein transporter activity" evidence=IEA;IDA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 148/503 (29%), Positives = 236/503 (46%)

Query:    36 QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
             +RR  N V + K +RE  ++ KR  R G +     S  S    D   S+    T + +E 
Sbjct:    27 RRREDNMVEIRKNKREENLQKKR--REGFNP----SMASQPGQDFSSSL---PTETRLEN 77

Query:    96 LKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQL 155
             ++  +A         ++ A             PPI   +++G +P +VQ L+     +  
Sbjct:    78 IQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDDFTQLQ 137

Query:   156 LEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214
              EAAW LTNIA+G  E T+         +   L   +S  V EQ  WALGNVAG+  + R
Sbjct:   138 FEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCR 197

Query:   215 NVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 273
             + +LS +  +  LA+    +K S +R A W LSN  +G  P+PA E  +    L A+ R 
Sbjct:   198 DHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGK-PQPAFEQ-QTKAALPALERL 255

Query:   274 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333
             L   DEE+ T+ +W + YLS  +N     ++ +GV+  LV+ LA   S  +LIP LR++G
Sbjct:   256 LHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHP-SPSVLIPALRTIG 314

Query:   334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQ 392
             N+V GD      V      I+ Q +  L+  LK+ ++  +KKEA W +SNI AG+    Q
Sbjct:   315 NIVTGDDIQTQAV------ISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQ 368

Query:   393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
                                F+IKKE  + + N     T G G      + +  LV +GC+
Sbjct:   369 EVFQAGIIRPLINLLEIGEFEIKKEAVWAISNA----TSG-GN----HDQIKFLVSQGCI 419

Query:   453 SGFIDLVRSADIEAARLGLQFMELVLR--------GMPNHEG--TKLVEREDGIDAMERF 502
                 DL+   D     + L+ +E +L+        G   ++    +++E  DG+D +E  
Sbjct:   420 RPLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENL 479

Query:   503 QFHENEDLRNMANGLVDKYFGED 525
             Q H+N ++   A  +++ Y+  D
Sbjct:   480 QSHDNNEIYEKAVKILESYWAAD 502

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 149/502 (29%), Positives = 235/502 (46%)

Query:    36 QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
             +RR  N V + K +RE  ++ KR  R G  A+ ++   +   V    ++        +E 
Sbjct:    27 RRREDNMVEIRKSKREESLQKKR--REGLQAN-QLPQFAPSPVPASSTV-----EKKLES 78

Query:    96 LKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQL 155
             L + V          ++ A             PPIE  + AG +P  V+ L      +  
Sbjct:    79 LPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTREDYPQLQ 138

Query:   156 LEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214
              EAAW LTNIA+G  E TK         I   L    S  V EQ  WALGNVAG+    R
Sbjct:   139 FEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPRCR 198

Query:   215 NVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 273
             +++L QGAL PL   +  + K S +R A W LSN  +G  P+P  + ++    L A+ R 
Sbjct:   199 DLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGK-PQPPFDQVRP--ALPALERL 255

Query:   274 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333
             +   DEE+ T+  W + YLS  +N     ++++GV+  LVE L    S  +LIP LRS+G
Sbjct:   256 IHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVE-LLQHQSPSVLIPALRSIG 314

Query:   334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQX 393
             N+V GD      V+   HG    ++++L     +  + +KKEA W +SNI AG+ +  Q 
Sbjct:   315 NIVTGDDLQTQCVI--SHGALLSLLSLLTH---NHKKSIKKEACWTISNITAGNRDQIQA 369

Query:   394 XXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453
                               FDIKKE A+ + N     T G G P  I+     +V +G + 
Sbjct:   370 VCEAGLICPLVNLLQNAEFDIKKEAAWAISNA----TSG-GSPDQIKY----MVEQGVVK 420

Query:   454 GFIDLVRSADIEAARLGLQFMELVLR-G----MPNHEG-----TKLVEREDGIDAMERFQ 503
                DL+   D     + L+ +E +L+ G    +  + G      +L++  +G++ +E  Q
Sbjct:   421 PLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQ 480

Query:   504 FHENEDLRNMANGLVDKYFGED 525
              H+N ++   A  +++ Y+ E+
Sbjct:   481 SHDNSEIYEKAVKILETYWLEE 502

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 149/501 (29%), Positives = 228/501 (45%)

Query:    34 AAQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAV 93
             A +RR  N V + K +RE  +  KR  R G     ++   + +  D  Q      T++AV
Sbjct:    25 ARRRREDNLVEIRKNKREDSLLKKR--REGMMLQQQLPLGAGL--DGPQ------TAAAV 74

Query:    94 EELKSAVAYHGKGAM----QKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFG 149
             E+    +    +G      Q ++ A             PPI+  +KAG IP  V+ L   
Sbjct:    75 EKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRH 134

Query:   150 SPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAG 208
                +   EAAW LTN+A+G  + T+         I   L   +S  V EQ  WALGNVAG
Sbjct:   135 DHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAG 194

Query:   209 EGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL 267
             +    RN++L+ GAL PL   +  N K S +R A W LSN  +G   KP T   +V   L
Sbjct:   195 DSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRG---KPPTPFEQVKPAL 251

Query:   268 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 327
               + + +   DEE+ T+  W + YLS   N     ++++GV   LVE L    S  +LIP
Sbjct:   252 PILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLG-HQSPTVLIP 310

Query:   328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAG 386
              LR++GN+V GD S    ++  G      V+  L   L   H+  +KKEA W +SNI AG
Sbjct:   311 ALRTVGNIVTGDDSQTQFIIESG------VLPHLYNLLTQNHKKSIKKEACWTISNITAG 364

Query:   387 SVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 446
             +    +                   FDIKKE A+ + N     +  + +  + Q  +  L
Sbjct:   365 NKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPL 424

Query:   447 VGRG-CLSGFIDLVRSADIE-AARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF 504
                  C    I  V    +E   ++G    E+ L    N    +++E  DG+D +E  Q 
Sbjct:   425 CDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYA-QIIEESDGLDKVENLQS 483

Query:   505 HENEDLRNMANGLVDKYFGED 525
             H+N ++   A  ++++Y+ E+
Sbjct:   484 HDNNEIYEKAVKILERYWAEE 504

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 154/505 (30%), Positives = 232/505 (45%)

Query:    36 QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
             +RR  N V + K +RE  +  KR  R G  A     S S   VD++           ++ 
Sbjct:    27 RRREDNMVEIRKSKREESLMKKR--REGMQALQGFPSASAASVDKK-----------LDS 73

Query:    96 LKSAVA--YHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
             LK  VA  +    A+Q  + +             PPIE  + AG +P  V+ L       
Sbjct:    74 LKDMVAGVWSDDPALQ--LESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPA 131

Query:   154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
                EAAW LTNIA+G  + TK         I   L    S  V EQ  WALGNVAG+   
Sbjct:   132 IQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPR 191

Query:   213 FRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 271
              R+++L  GAL PL   +  + K S +R A W LSN  +G  P+P  + +K    L A+ 
Sbjct:   192 CRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGK-PQPHFDQVKP--ALPALE 248

Query:   272 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS 331
             R +   DEE+ T+  W + YLS  +N     ++++GV+  LVE L   +S  +LIP LR+
Sbjct:   249 RLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVE-LLLHHSPSVLIPALRT 307

Query:   332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEH 390
             +GN+V GD      V+  G       +  L   L   H+  +KKEA W +SNI AG+ + 
Sbjct:   308 VGNIVTGDDIQTQCVINSG------ALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQ 361

Query:   391 KQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
              Q                   FDIKKE A+ + N     T G G      + +  LV +G
Sbjct:   362 IQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNA----TSG-GS----HDQIKYLVEQG 412

Query:   451 CLSGFIDLVRSADIEAARLGLQFMELVLR-GMPN----HEG-----TKLVEREDGIDAME 500
             C+    DL+   D     + L+ +E +L+ G       H G      +L++  +G++ +E
Sbjct:   413 CIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIE 472

Query:   501 RFQFHENEDLRNMANGLVDKYFGED 525
               Q H+N ++   A  +++ Y+ E+
Sbjct:   473 NLQSHDNNEIYEKAVKILETYWLEE 497

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

CGD|CAL0000730 orf19.5682 [Candida albicans (taxid:5476)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 139/507 (27%), Positives = 233/507 (45%)

Query:    36 QRRRQNAVTVGKERRESLVRAKR-LCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVE 94
             +RR  + V + K++RE ++  +R     G  ++ E   + +   DE Q   +++     +
Sbjct:    31 RRRETHQVDLRKQKREEVLAKRRNYANQGNESEDEEEYNPNANNDENQFYNKLK-----Q 85

Query:    95 ELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQ 154
             +L   +          ++ A             PPI+  +++G IP LV+ +    PD  
Sbjct:    86 DLPKMLEMIQAPDFDSQLAATVKFRQILSREHNPPIDLVIQSGVIPTLVEFMKEDHPDML 145

Query:   155 LLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEF 213
              LEAAW LTNIA+G   +T+         +   L    S  V EQ  WALGNVAG+  + 
Sbjct:   146 QLEAAWALTNIASGDSSQTRVVVEANAVPLFVQLLYSQSLEVKEQAIWALGNVAGDSSDN 205

Query:   214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 273
             R+ +LS  A+ P+ ++    K S +RTA W LSNL +G  P+P   +  V   +  + + 
Sbjct:   206 RDYVLSCNAMEPVLQLFNCTKMSLIRTATWTLSNLCRGKSPQPDWNI--VSQAIPTLGKL 263

Query:   274 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333
             +   D E   +  W V YLS  ++ A   ++ + +   LVE L   ++L +  P LR++G
Sbjct:   264 IYSVDAETLVDACWAVSYLSDGTSEAIQAVIDARIPHRLVELLGHESTL-VQTPALRAIG 322

Query:   334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQX 393
             N+V G       V+  G      V+  L   L S    ++KEA W +SNI AG+ +  Q 
Sbjct:   323 NIVTGSDYQTQIVINAG------VLPALAPLLNSTKDTIRKEACWTISNITAGTTDQIQA 376

Query:   394 XXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453
                               +  KKE  + + N   + + G  KP  I+ +LVS   +GC+ 
Sbjct:   377 VIDANLIPQVIRLLIHGDYKTKKEACWAISN---ASSGGLTKPDQIR-YLVS---QGCIK 429

Query:   454 GFIDLVRSADIEAARLGLQFMELVLR-GMPNHEGTK--------LVEREDGIDAMERFQF 504
                DL+  AD +   + L  +E +L+ G  + E            +E   G++ +   Q 
Sbjct:   430 PLCDLLSVADSKIIEVTLDSLENILKMGEMDKEARNASVNEYALFIEEAGGMEKIFECQN 489

Query:   505 HENEDLRNMANGLVDKYFGEDYG-LDE 530
             + NE +   A G+++KYF +D G +D+
Sbjct:   490 NPNEKIYQKAFGIIEKYFSDDDGQIDD 516

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 151/511 (29%), Positives = 243/511 (47%)

Query:    35 AQRRRQNA-VTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSIL-EMQTSSA 92
             ++R+R+ A +++ K +RE  +  KR   V  S   +V S  +  +++  S++ E+ + + 
Sbjct:    22 SRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLINQRLEQLPSLVAEINSENP 81

Query:    93 VEELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPD 152
                LKS  A+    +++K                 PPIE  +K G +P LV+ L      
Sbjct:    82 DLILKSTTAFRKLLSIEK----------------SPPIEEVIKTGIVPRLVKFLYMQDFP 125

Query:   153 EQLLEAAWCLTNIAAGKQEETKXXXXXXXXXIAHLGEKSSSP---VAEQCAWALGNVAGE 209
             +   EAAW LTNIA+G  E+T+         +  L    SSP   V EQ  WALGN+AG+
Sbjct:   126 QLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVL--LLSSPHDDVREQAVWALGNIAGD 183

Query:   210 GEEFRNVLLSQGALPPLARMML-PN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 266
                 R+++LS  ALPPL  ++  P   K S VR A W LSN  +G  P+P  E+++    
Sbjct:   184 SHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGK-PQPPFEIVRAS-- 240

Query:   267 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI 326
             L  + + +   DEE+  +  W + YLS  SN     ++ + V + +VE L    ++ +  
Sbjct:   241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHP-TIAVQT 299

Query:   327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386
             P LR++GN+V GD +    VL      + Q ++ L+  L+S  R ++KEA W +SNI AG
Sbjct:   300 PALRTIGNIVTGDDNQTQIVL------SVQALSHLLNLLQSPKRAIRKEACWTISNITAG 353

Query:   387 SVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 446
                  Q                   F+I+KE A+ + N         G P+ I  H   L
Sbjct:   354 DKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSC-----GTPQQI--HF--L 404

Query:   447 VGRGCLSGFIDLVRSADIEAARLGLQFMELVL-RGMPNHEGT------KLVEREDGIDAM 499
             V +GC+    DL++ +D     + L+ +E +L  G    + T      K++E  DG+  +
Sbjct:   405 VSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQVTGVNPYKKIIEDADGLGKI 464

Query:   500 ERFQFHENEDLRNMANGLVDKYFGEDYGLDE 530
                Q H N+D     + ++  Y  ED   DE
Sbjct:   465 YDLQHHMNKDTFEKVSRIISTYL-EDEQEDE 494

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF08_0087 PF08_0087 "importin alpha, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 145/510 (28%), Positives = 244/510 (47%)

Query:    36 QRRRQNAVT-VGKERRESLVRAKR---LCRVGTSADGEVS------SDSDMMVDEEQSIL 85
             +R+R++ V  + K++RE  + +KR   +  +G   +   +      + +D   D   +  
Sbjct:    20 RRKREDLVVQIRKQQRECQLESKRAMVMANIGFEENNTYNLNYAKGNQNDSTNDSIYNTS 79

Query:    86 EMQTSSAVEELKS----AVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPV 141
                +S+ +E LK     A+       + + +N+             PPI+  + +G +P 
Sbjct:    80 SNNSSNTLEMLKKIPTLAIGVRSNEYVTQ-LNSTRELRKLLSIEKGPPIQEVINSGVVPY 138

Query:   142 LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXX-XIAHLGEKSSSPVAEQCA 200
             +V+ L +    +   EAAW +TNIA+G QE+TK          +  L       V EQ  
Sbjct:   139 IVEFLKYDDKTDLQFEAAWVITNIASGSQEQTKVVIDNNAVPHLVRLLSSEKEDVCEQAV 198

Query:   201 WALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATE 259
             WALGN+AG+  E R  +L+Q +LP L +++   +K + +R AAW LSNL +G   KPA +
Sbjct:   199 WALGNIAGDSAECREYVLNQNSLPLLLKILRTSHKRTLIRNAAWTLSNLCRG---KPAPK 255

Query:   260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 319
                V   L  +   +   DEE+ T+  W + YLS  SN   + ++ +GV + +VE L+  
Sbjct:   256 FEIVSKALPTLAALIYNDDEEILTDACWTLSYLSDGSNENINSVLDAGVAERVVELLSHC 315

Query:   320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 379
             + L +  P LR++GN+V GD    +DV+V    +  Q ++ L   L S  + +KKEA W 
Sbjct:   316 SFL-VQTPALRTVGNIVTGDDLQ-TDVVVKLGAV--QKLSCL---LNSSKKSIKKEACWA 368

Query:   380 LSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 439
             LSNI AG++   Q                   F+++KE A+ + N         G  +L 
Sbjct:   369 LSNITAGNISQIQAVIDNNVIPQLINILMKEDFEVRKEAAWAISNA------SSGGSELQ 422

Query:   440 QEHLVSLVGRGCLSGFIDLVRSADIEAARL-GLQ-FMEL----VLR-GMPNHEGTKLVER 492
              E+LV       LS  +D V  A+I +  L GL+  +E+     LR  +P +    L E 
Sbjct:   423 IEYLVECGAIHSLSNLLD-VEDANIISVTLEGLENILEMGENKKLRDNLPTNPYVHLFEE 481

Query:   493 EDGIDAMERFQFHENEDLRNMANGLVDKYF 522
              D +  ++  Q  + +++ N A  ++ KYF
Sbjct:   482 CDSVHKIDALQDRKVDNICNKAWKILYKYF 511

GO:0005643 "nuclear pore" evidence=ISS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=ISS

UNIPROTKB|Q8IAW0 PF08_0087 "Importin subunit alpha" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 145/510 (28%), Positives = 244/510 (47%)

Query:    36 QRRRQNAVT-VGKERRESLVRAKR---LCRVGTSADGEVS------SDSDMMVDEEQSIL 85
             +R+R++ V  + K++RE  + +KR   +  +G   +   +      + +D   D   +  
Sbjct:    20 RRKREDLVVQIRKQQRECQLESKRAMVMANIGFEENNTYNLNYAKGNQNDSTNDSIYNTS 79

Query:    86 EMQTSSAVEELKS----AVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPV 141
                +S+ +E LK     A+       + + +N+             PPI+  + +G +P 
Sbjct:    80 SNNSSNTLEMLKKIPTLAIGVRSNEYVTQ-LNSTRELRKLLSIEKGPPIQEVINSGVVPY 138

Query:   142 LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXX-XIAHLGEKSSSPVAEQCA 200
             +V+ L +    +   EAAW +TNIA+G QE+TK          +  L       V EQ  
Sbjct:   139 IVEFLKYDDKTDLQFEAAWVITNIASGSQEQTKVVIDNNAVPHLVRLLSSEKEDVCEQAV 198

Query:   201 WALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATE 259
             WALGN+AG+  E R  +L+Q +LP L +++   +K + +R AAW LSNL +G   KPA +
Sbjct:   199 WALGNIAGDSAECREYVLNQNSLPLLLKILRTSHKRTLIRNAAWTLSNLCRG---KPAPK 255

Query:   260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 319
                V   L  +   +   DEE+ T+  W + YLS  SN   + ++ +GV + +VE L+  
Sbjct:   256 FEIVSKALPTLAALIYNDDEEILTDACWTLSYLSDGSNENINSVLDAGVAERVVELLSHC 315

Query:   320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 379
             + L +  P LR++GN+V GD    +DV+V    +  Q ++ L   L S  + +KKEA W 
Sbjct:   316 SFL-VQTPALRTVGNIVTGDDLQ-TDVVVKLGAV--QKLSCL---LNSSKKSIKKEACWA 368

Query:   380 LSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 439
             LSNI AG++   Q                   F+++KE A+ + N         G  +L 
Sbjct:   369 LSNITAGNISQIQAVIDNNVIPQLINILMKEDFEVRKEAAWAISNA------SSGGSELQ 422

Query:   440 QEHLVSLVGRGCLSGFIDLVRSADIEAARL-GLQ-FMEL----VLR-GMPNHEGTKLVER 492
              E+LV       LS  +D V  A+I +  L GL+  +E+     LR  +P +    L E 
Sbjct:   423 IEYLVECGAIHSLSNLLD-VEDANIISVTLEGLENILEMGENKKLRDNLPTNPYVHLFEE 481

Query:   493 EDGIDAMERFQFHENEDLRNMANGLVDKYF 522
              D +  ++  Q  + +++ N A  ++ KYF
Sbjct:   482 CDSVHKIDALQDRKVDNICNKAWKILYKYF 511

GO:0005643 "nuclear pore" evidence=ISS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02821	IMA1_YEAST	No assigned EC number	0.3015	0.8773	0.8579	yes	no
Q9FYP9	IMA2_ORYSJ	No assigned EC number	0.6573	0.9452	0.9488	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.3066	0.8566	0.8798	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00160794 hypothetical protein (522 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	9e-70
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-18
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-12
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-11
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.001
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.002

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  232 bits (593), Expect = 9e-70
 Identities = 149/510 (29%), Positives = 239/510 (46%), Gaps = 48/510 (9%)

Query: 36  QRRRQNAVTVGKERRESLVRAKR-LCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVE 94
           +RR +  V + K++RE L+  +R L  V   A+            E   + +   S  +E
Sbjct: 27  RRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSDDIE 86

Query: 95  ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQ 154
           +   AV                + R+LLS+   PPI+  + AG +P  V+ +     D  
Sbjct: 87  QQLQAVY---------------KFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDML 131

Query: 155 LLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 212
             EAAW LTNIA+G  ++TK ++   A+PL I  L   +   V EQ  WALGN+AG+ E 
Sbjct: 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-TEDDVREQAVWALGNIAGDSEG 190

Query: 213 FRNVLLSQGALPPLARMMLPNK--GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
            R+ +L  GAL PL  ++L +    S +R A W LSNL +G +P P    I     L  +
Sbjct: 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPIL 248

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
            + +   D E+  +  W + YLS   N     ++  G+   LVE L +  S ++  P LR
Sbjct: 249 AKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALR 307

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 390
           S+GN+V G       ++  G       +      L S    ++KEA W +SNI AG+ E 
Sbjct: 308 SVGNIVTGSDDQTQVIINCG------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQ 361

Query: 391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
            Q +  +  +  L+HLLS++ + IKKE  + + N     + G  +P +I+     LV +G
Sbjct: 362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT---SGGLNRPDIIR----YLVSQG 414

Query: 451 CLSGFIDLVRSADIEAARLGLQFMELVLRG----------MPNHEGTKLVEREDGIDAME 500
            +    DL+   D +   + L  +E +L+             N      VE+  G+DA+ 
Sbjct: 415 FIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNIN-IYAVYVEKAGGMDAIH 473

Query: 501 RFQFHENEDLRNMANGLVDKYFGEDYGLDE 530
             Q   N  + + A  +++K+FGE+  +DE
Sbjct: 474 GLQDSVNRTIYDKAYSIIEKFFGEEDAVDE 503

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 135 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPA--LPLLIAHLGEKSS 192
           +AG +P LV  L+    + Q  EAAW L+N++AG  +  +A++ A  LP L+  L  +  
Sbjct: 5   QAGGLPALVSLLSSSDENVQR-EAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63

Query: 193 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 249
             V +   WAL N+A   E+ + ++L  G +P L  ++  +     + A  ALSNL 
Sbjct: 64  E-VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 71.2 bits (175), Expect = 6e-15
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
            ++++G L  LV  L +S+   +      +L NL AG++  I  V+  G       +  L
Sbjct: 2   AVIQAGGLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAG------GLPAL 54

Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 421
           V+ LKSE   + K A W L N+AAG  ++K ++  +  +  L++LL +S  DI+K     
Sbjct: 55  VQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114

Query: 422 LGNLC 426
           L NL 
Sbjct: 115 LSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 318
           E +   G L A++  L  +DE +  E AW +  LSA +N     +V++G L  LV+ L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-K 59

Query: 319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 378
           S   +++   L +L NL AG       VL  G       +  LV  L S +  ++K A  
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAG------GVPKLVNLLDSSNEDIQKNATG 113

Query: 379 VLSNIAA 385
            LSN+A+
Sbjct: 114 ALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416
            +  LV  L S    +++EAAW LSN++AG+ ++ Q +  +  L  L+ LL +   ++ K
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE 465
              + L NL   P +      ++ E        G +   ++L+ S++ +
Sbjct: 68  AALWALRNLAAGPED---NKLIVLEA-------GGVPKLVNLLDSSNED 106

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 275
            ++  G LP L  ++  +  +  R AAWALSNL  G +      +++  G L A+++ LK
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEA-GGLPALVQLLK 59

Query: 276 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335
             DEE+     W +  L+A       +++++G +  LV  L  S++  +      +L NL
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNL 118

Query: 336 VA 337
            +
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 238
            LP L++ L   S   V  + AWAL N++    +    ++  G LP L +++       V
Sbjct: 8   GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 239 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 289
           + A WAL NL  GP+      ++   G +  ++  L  ++E++       +
Sbjct: 67  KAALWALRNLAAGPEDN--KLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 113 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAGKQE 171
            A   L  L +      I+  ++AG +P LVQ L   S DE++++ A W L N+AAG ++
Sbjct: 26  EAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLL--KSEDEEVVKAALWALRNLAAGPED 82

Query: 172 ETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVA 207
               +L    +P L+  L + S+  + +    AL N+A
Sbjct: 83  NKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAA 167
              +  ++AGA+P LVQ L   SPDE++ E AAW L+N+AA
Sbjct: 3   ENKQAVIEAGAVPPLVQLL--SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAA 167
              +  + AG +P LV+ L   S DE+++ EAAW L+N+++
Sbjct: 3   ENKQAVVDAGGLPALVELL--KSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
            +  LV+ L S    +++EAAW LSN+AA
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 211 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 248
            E +  ++  GA+PPL +++          AAWALSNL
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 193 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 248
             V E  A ALG +AG G E     + +  LP L  ++  +       AAWAL  +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.85
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.72
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.68
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.67
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.66
PRK09687	280	putative lyase; Provisional	99.66
PRK09687	280	putative lyase; Provisional	99.64
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.59
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.5
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.49
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.48
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.46
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.44
PTZ00429	746	beta-adaptin; Provisional	99.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.42
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.42
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.42
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.4
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.4
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.39
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.3
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.23
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.21
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.2
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.16
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.14
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.13
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.1
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.02
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.02
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.0
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.99
PTZ00429	746	beta-adaptin; Provisional	98.97
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.92
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.81
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.8
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.79
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.78
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.77
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.76
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.75
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.72
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.69
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.63
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.6
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.58
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.49
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.49
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.47
TIGR02270	410	conserved hypothetical protein. Members are found	98.47
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.44
COG5369	743	Uncharacterized conserved protein [Function unknow	98.39
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.37
COG5369	743	Uncharacterized conserved protein [Function unknow	98.37
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.36
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.32
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.31
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.3
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.3
TIGR02270	410	conserved hypothetical protein. Members are found	98.25
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.25
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.24
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.19
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.19
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.18
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.15
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.15
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.1
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.08
PF05536	543	Neurochondrin: Neurochondrin	98.07
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.07
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.05
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.05
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.04
PF05536	543	Neurochondrin: Neurochondrin	98.04
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.0
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.0
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.98
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.97
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.96
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.93
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.93
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.89
KOG0567	289	consensus HEAT repeat-containing protein [General	97.88
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.84
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.83
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.81
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.81
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.78
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.77
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.76
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.71
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.7
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.69
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.69
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.67
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.65
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.62
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.61
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.61
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.61
KOG0567	289	consensus HEAT repeat-containing protein [General	97.54
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.53
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.32
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.3
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.27
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.26
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.26
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.25
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.22
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.18
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.12
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.11
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.08
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.07
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.98
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.95
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.95
PF05004	309	IFRD: Interferon-related developmental regulator (	96.87
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.82
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.75
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.73
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.72
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.7
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.68
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.53
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.43
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.42
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.39
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.33
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.29
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.29
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.22
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.21
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.2
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.13
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.1
PRK14707	2710	hypothetical protein; Provisional	96.04
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.02
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.01
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.01
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.94
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.94
PF05004	309	IFRD: Interferon-related developmental regulator (	95.71
PRK14707	2710	hypothetical protein; Provisional	95.7
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.69
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.66
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.65
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.64
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.62
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.62
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.58
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.56
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.56
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.55
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.5
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.49
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.38
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.13
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.11
KOG2956	516	consensus CLIP-associating protein [General functi	95.1
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.1
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.95
KOG1243	690	consensus Protein kinase [General function predict	94.94
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.93
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.83
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.83
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.8
KOG2734	536	consensus Uncharacterized conserved protein [Funct	94.71
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.66
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.64
KOG3036	293	consensus Protein involved in cell differentiation	94.51
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.48
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.41
KOG2062	929	consensus 26S proteasome regulatory complex, subun	94.38
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.33
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.95
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.92
KOG2025	892	consensus Chromosome condensation complex Condensi	93.91
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.82
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.79
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.77
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.72
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.68
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.53
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.44
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.38
KOG3036	293	consensus Protein involved in cell differentiation	93.37
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.04
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.88
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.68
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.67
KOG2956	516	consensus CLIP-associating protein [General functi	92.63
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.61
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.51
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.51
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.46
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.37
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.37
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.36
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.28
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	92.03
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.01
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.0
KOG1243	690	consensus Protein kinase [General function predict	90.97
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.32
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	90.26
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	89.69
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.32
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	89.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.91
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	88.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.64
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	88.33
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.32
KOG2933	334	consensus Uncharacterized conserved protein [Funct	88.1
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	87.86
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	86.89
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	86.36
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	85.96
COG5656	970	SXM1 Importin, protein involved in nuclear import	85.91
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	85.26
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	85.22
KOG2933	334	consensus Uncharacterized conserved protein [Funct	85.14
KOG2137	700	consensus Protein kinase [Signal transduction mech	84.89
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.54
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.22
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	84.09
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	83.65
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	83.55
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	83.32
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.17
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	83.12
KOG2025	892	consensus Chromosome condensation complex Condensi	82.52
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	81.62
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	81.1
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	80.47
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	80.33
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	80.05

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.5e-97  Score=687.81  Aligned_cols=475  Identities=30%  Similarity=0.493  Sum_probs=428.4

Q ss_pred             HHh-hh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHH
Q 009647           25 VIW-FL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVA  101 (530)
Q Consensus        25 ~~~-~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  101 (530)
                      .|| |+ ..++.+|||| +++++|||+||||.|.|||++ .+..++.+.+.            ++.. +....+++++.+
T Consensus        13 ~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl-~dv~e~a~ss~------------i~me-qq~~~elp~lt~   78 (526)
T COG5064          13 NFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-ADVSEEAESSF------------IPME-QQFYSELPQLTQ   78 (526)
T ss_pred             cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccchhhhcc------------Cchh-HHhhhhhHHHHH
Confidence            777 54 4467777777 699999999999999999975 33333332110            0110 113457888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CC
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA  179 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~  179 (530)
                      .+.|+|.+.+++|+..+|++||.+..||++.+|++|+||++|+|+.....+.+++||+|+|+||+||+..+++.++  |+
T Consensus        79 ~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A  158 (526)
T COG5064          79 QLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA  158 (526)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence            8889999999999999999999999999999999999999999997666677899999999999999999999988  79


Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCch
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      ||.|+++|.+ ++.+|++|++|+|||||+|++.+|+.++++|++.|++.++.++  +.++.++++|+|+|||++++|.|.
T Consensus       159 VPlfiqlL~s-~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~  237 (526)
T COG5064         159 VPLFIQLLSS-TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD  237 (526)
T ss_pred             hHHHHHHHcC-chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence            9999999988 7889999999999999999999999999999999999999875  569999999999999999998887


Q ss_pred             hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      ...  .+.++|.|.+++.+.|++++.+|||+++||++++.+.++++++.|+.++|+++| .+++..+++||+|.+|||++
T Consensus       238 w~~--isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVT  314 (526)
T COG5064         238 WSN--ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVT  314 (526)
T ss_pred             hHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeee
Confidence            665  469999999999999999999999999999999999999999999999999999 58999999999999999999


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      |++.|++.++++      |+++.|..+|++++..+|++|||+|+||++|+.++++++++++++|+|+++|.+.++.+++|
T Consensus       315 G~D~QTqviI~~------G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE  388 (526)
T COG5064         315 GSDDQTQVIINC------GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE  388 (526)
T ss_pred             cCccceehheec------ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            999999999987      59999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC---------Ccchh
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN---------HEGTK  488 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~---------~~~~~  488 (530)
                      ||||++|.++++.   +.|    +++++|+++|+|++||++|...|.++++++|++++++|+.++.         +.|..
T Consensus       389 ACWAisNatsgg~---~~P----D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~  461 (526)
T COG5064         389 ACWAISNATSGGL---NRP----DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAV  461 (526)
T ss_pred             HHHHHHhhhcccc---CCc----hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHH
Confidence            9999999988642   334    7899999999999999999999999999999999999986531         24678


Q ss_pred             HHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCCC
Q 009647          489 LVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE  530 (530)
Q Consensus       489 ~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~~  530 (530)
                      ++|+.||++.|..||.+.|.+||.+|.+||++||++||.+||
T Consensus       462 ~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~  503 (526)
T COG5064         462 YVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE  503 (526)
T ss_pred             HHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhh
Confidence            999999999999999999999999999999999999998765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-92  Score=705.78  Aligned_cols=472  Identities=33%  Similarity=0.539  Sum_probs=422.4

Q ss_pred             HHHHh-hhcCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHH
Q 009647           23 CSVIW-FLVGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAV  100 (530)
Q Consensus        23 ~~~~~-~~~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  100 (530)
                      ++.|| |++|.+++|||| |..|+|||+||||+|.|||+.  . .+...   ....+  ..    ..    ...++..++
T Consensus         9 ~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~--~-~~~~~---~~~~~--~~----~~----~~~~~~~~~   72 (514)
T KOG0166|consen    9 RRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRND--E-EELML---DELLS--DS----QS----QASNLELML   72 (514)
T ss_pred             HHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhh--h-hhccc---ccccc--hh----HH----HhhhhHHHH
Confidence            44555 668988888877 799999999999999999961  1 11000   00000  01    11    112244455


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--C
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--P  178 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~  178 (530)
                      ..+.|+++..++.|+..+|+++|.+.+||++.++.+|+||.||++|..++++.+|+||+|+|+|||+|++++++.++  |
T Consensus        73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~ag  152 (514)
T KOG0166|consen   73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAG  152 (514)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCC
Confidence            55679999999999999999999999999999999999999999999888889999999999999999999999999  7


Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCCh-hHHHHHHHHHHHhhcCCCCCch
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG-STVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      ++|.|+.+|.+ ++.+|+++|+|+||||++|++.+|+.++.+|++++|+.++..++. .+.++++|+|+|||++++|.|.
T Consensus       153 avp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~  231 (514)
T KOG0166|consen  153 AVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP  231 (514)
T ss_pred             chHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence            99999999998 899999999999999999999999999999999999999997754 8999999999999999988877


Q ss_pred             hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      .+.  ...++|.|..++++.|++++.+|||+++||++++++.++.+++.|++++|+++| .+.+..++.||++++|||++
T Consensus       232 ~~~--v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  232 FDV--VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             HHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceee
Confidence            666  469999999999999999999999999999999999999999999999999999 58899999999999999999


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      |++.|+|.++++      |++|.|..++. +....++++|||+||||++|+++++++++++|++|.|+++|+++++++|+
T Consensus       309 G~d~QTq~vi~~------~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK  382 (514)
T KOG0166|consen  309 GSDEQTQVVINS------GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK  382 (514)
T ss_pred             ccHHHHHHHHhc------ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence            999999999976      69999999998 56667999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC------CcchhHH
Q 009647          417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN------HEGTKLV  490 (530)
Q Consensus       417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~------~~~~~~i  490 (530)
                      ||+|||+|++.+     |+    ++|+.+|++.|+|++||++|...|++++.++|++|++|++.++.      ++++.+|
T Consensus       383 EAawaIsN~ts~-----g~----~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~I  453 (514)
T KOG0166|consen  383 EAAWAISNLTSS-----GT----PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMI  453 (514)
T ss_pred             HHHHHHHhhccc-----CC----HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            999999999875     44    48899999999999999999999999999999999999986542      4667899


Q ss_pred             HHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCC
Q 009647          491 EREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD  529 (530)
Q Consensus       491 ~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~  529 (530)
                      |++||+++||.||+|+|++||++|..||++||++|++++
T Consensus       454 Ee~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~  492 (514)
T KOG0166|consen  454 EEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDED  492 (514)
T ss_pred             HHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcccc
Confidence            999999999999999999999999999999999986543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=7.1e-43  Score=397.00  Aligned_cols=402  Identities=21%  Similarity=0.178  Sum_probs=336.1

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-  177 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-  177 (530)
                      ++..+.++++..+..|+..+.++++..+ .++..+++.|+||.|+++|.+++++.++.+|+|+|+||+++++++++.++ 
T Consensus       194 LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~  272 (2102)
T PLN03200        194 LVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD  272 (2102)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3344458999999999999877765543 36788999999999999998766667888899999999999999999998 


Q ss_pred             -CCcHHHHHhhcCCC--------CHHHHHHHHHHHHhhcCCCch-----------hHHHH---HhcCChhhhHhhcCCCC
Q 009647          178 -PALPLLIAHLGEKS--------SSPVAEQCAWALGNVAGEGEE-----------FRNVL---LSQGALPPLARMMLPNK  234 (530)
Q Consensus       178 -~~v~~L~~lL~~~~--------~~~v~~~a~~~L~nla~d~~~-----------~r~~~---~~~g~i~~L~~lL~~~~  234 (530)
                       |++|.|++++.++.        +..++++|+|+|+|||++.+.           .|+..   ...|++++++.++..++
T Consensus       273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~  352 (2102)
T PLN03200        273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA  352 (2102)
T ss_pred             CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence             89999999997522        245699999999999997544           33332   45688999999888665


Q ss_pred             hhHH----HHHHHHHHHhhcCCCCCchhh-----------------HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647          235 GSTV----RTAAWALSNLIKGPDPKPATE-----------------LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  293 (530)
Q Consensus       235 ~~~~----~~a~~~L~nL~~~~~~~~~~~-----------------~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  293 (530)
                      ....    .+++|+|.+||++++|.+..+                 .+...++++.|+.++...+.+++.+++|+|.||+
T Consensus       353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~  432 (2102)
T PLN03200        353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC  432 (2102)
T ss_pred             hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence            4433    478899999999876665221                 2234577888999999999999999999999999


Q ss_pred             cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647          294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  373 (530)
Q Consensus       294 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~  373 (530)
                      +++++.++.+.+.|+++.|+++| .+++..++.+|+++|+|++.+++.+++.++++      |++|.|+++|.+++..++
T Consensus       433 ~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea------GaIP~LV~LL~s~~~~iq  505 (2102)
T PLN03200        433 CGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALLAILTDEVDESKWAITAA------GGIPPLVQLLETGSQKAK  505 (2102)
T ss_pred             CCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHcCCCHHHH
Confidence            98899999999999999999999 57888999999999999999998888888865      699999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH-hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          374 KEAAWVLSNIAAGSVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       374 ~~A~~~Lsnl~~~~~~~~~~li-~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                      ++|+|+|+|++.++ ++++.++ ++|++|+|+++|.+++++++++|+|+|+|++.+.+         .+         .+
T Consensus       506 eeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d---------~~---------~I  566 (2102)
T PLN03200        506 EDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD---------AA---------TI  566 (2102)
T ss_pred             HHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc---------hh---------HH
Confidence            99999999999865 5555555 78999999999999999999999999999987531         12         33


Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCC
Q 009647          453 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYG  527 (530)
Q Consensus       453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~-~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~  527 (530)
                      ++++.+|.++++.++..++++|.+|+........ .......||++.|.+|+.|+++++|+.|.++|.+||....+
T Consensus       567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            7899999999999999999999999876544221 12234679999999999999999999999999999986543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-40  Score=334.32  Aligned_cols=364  Identities=21%  Similarity=0.321  Sum_probs=317.3

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      .+.+++.+.+++ ...+.++...+..+.+... .....++  |.||.|+.+|....++.++..|+|+|.|||+.+.+.-.
T Consensus        68 ~~~~~~~~~S~~-~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~  146 (514)
T KOG0166|consen   68 LELMLAALYSDD-PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK  146 (514)
T ss_pred             hHHHHHHHhCCC-HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence            667777777766 4557888888888775432 3344444  89999999998767799999999999999999999999


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-HHHHHHHHHHHHhhc
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSA  294 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~  294 (530)
                      .++++|++|.++.++.+++..+++.|+|+|+|++.+ . ..+++++...|++++|+.++..++. .++..+.|+|+|||+
T Consensus       147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s-~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-S-PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-C-hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999944 3 4678899899999999999998876 788999999999999


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                      +.+..-..-.-..++|.|..++ .+.|++++..|+|+|++++.+.++.++.++++      |++|.|+.+|.+....++.
T Consensus       225 gk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~------gvv~~LV~lL~~~~~~v~~  297 (514)
T KOG0166|consen  225 GKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDA------GVVPRLVDLLGHSSPKVVT  297 (514)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc------cchHHHHHHHcCCCccccc
Confidence            8654433333456899999988 69999999999999999999999999999975      6999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChH
Q 009647          375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS  453 (530)
Q Consensus       375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~  453 (530)
                      .|+.+++||++|++.+.+.+++.|++|.|..++. +....+++||||+|+|++.+      +    .+|++++++.|++|
T Consensus       298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG------~----~~qiqaVida~l~p  367 (514)
T KOG0166|consen  298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG------N----QEQIQAVIDANLIP  367 (514)
T ss_pred             HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC------C----HHHHHHHHHcccHH
Confidence            9999999999999999999999999999999998 56666999999999999974      3    58999999999999


Q ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          454 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       454 ~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      .|+++|...|.+++..|.++|.|++..+.. .-..++.+.|.++.+-.|..-.+..+...+...++..+.
T Consensus       368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~  436 (514)
T KOG0166|consen  368 VLINLLQTAEFDIRKEAAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK  436 (514)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876642 334677889999999999988888888888777776653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.8e-39  Score=367.84  Aligned_cols=409  Identities=19%  Similarity=0.196  Sum_probs=349.2

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-  177 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-  177 (530)
                      ++..+.+.+.+.|.+++.+|+.+.. +.+..++.+++.|++|.|+++|.+++ ...|..|+|+|.|++.++.+++..++ 
T Consensus       409 LV~LL~~~~~evQ~~Av~aL~~L~~-~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie  486 (2102)
T PLN03200        409 LVGLITMATADVQEELIRALSSLCC-GKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA  486 (2102)
T ss_pred             hhhhhccCCHHHHHHHHHHHHHHhC-CCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3344457889999999999999854 44566788999999999999999865 67778899999999999988888888 


Q ss_pred             -CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647          178 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP  256 (530)
Q Consensus       178 -~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~  256 (530)
                       |++|.|+++|.+ ++.+++++|+|+|+|++.++++.|..+...|++|+|+.+|++.+...++.++|+|.||+.+.++..
T Consensus       487 aGaIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~  565 (2102)
T PLN03200        487 AGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT  565 (2102)
T ss_pred             CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence             899999999987 789999999999999999888888888899999999999999999999999999999975422210


Q ss_pred             h-----------------------------------hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647          257 A-----------------------------------TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS  301 (530)
Q Consensus       257 ~-----------------------------------~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~  301 (530)
                      .                                   .+.+...+++|.|..++.+++++++..|+|+|.+++.++.+.++
T Consensus       566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~  645 (2102)
T PLN03200        566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE  645 (2102)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            0                                   00011357999999999999999999999999999999999999


Q ss_pred             HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHH
Q 009647          302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  380 (530)
Q Consensus       302 ~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~L  380 (530)
                      .++..|++++++.+| .+.+.+++..+.++|+|++.+... +...+++      .|++|+|+.+|.+.+..++..|+.+|
T Consensus       646 avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~------~GaV~pL~~LL~~~d~~v~e~Al~AL  718 (2102)
T PLN03200        646 SLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAA------EDAIKPLIKLAKSSSIEVAEQAVCAL  718 (2102)
T ss_pred             HHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH------cCCHHHHHHHHhCCChHHHHHHHHHH
Confidence            999999999999999 588889999999999999975443 3445554      47999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH-HHHHHHhcCChHHHHhhh
Q 009647          381 SNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE-HLVSLVGRGCLSGFIDLV  459 (530)
Q Consensus       381 snl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~-~~~~l~~~g~i~~L~~lL  459 (530)
                      .||+... +....+.+.|++++|+++|++++++.|+.|+|+|.++|.+..     .   .+ ...++...|++.+|+++|
T Consensus       719 anLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~-----~---~~~~~~~~~~~g~v~~l~~~L  789 (2102)
T PLN03200        719 ANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP-----V---DDVLKDSVQCRGTVLALVDLL  789 (2102)
T ss_pred             HHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC-----h---hHHHHHHHHHhCcHHHHHHHH
Confidence            9998866 567778888999999999999999999999999999997531     1   12 236677899999999999


Q ss_pred             ccCCHHHHHH--HHHHHHHHHccCCC-----CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCC
Q 009647          460 RSADIEAARL--GLQFMELVLRGMPN-----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDY  526 (530)
Q Consensus       460 ~~~d~~i~~~--~L~~L~~il~~~~~-----~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~  526 (530)
                      +..|.+....  +|++|.++.+....     ++....+|..++++.|.....|+++.+|++|..||+++..+..
T Consensus       790 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~  863 (2102)
T PLN03200        790 NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP  863 (2102)
T ss_pred             hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence            9999887776  99999999985332     2446788999999999666699999999999999999988754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.6e-39  Score=301.19  Aligned_cols=363  Identities=20%  Similarity=0.292  Sum_probs=307.1

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhc-CChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAA-GKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~-~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      +|.|.+-|-+++ -+.|..|..-+..+.| .+....+.++  |.||.|+++|.+....-++-.|+|+|.||++......+
T Consensus        73 lp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          73 LPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            477777777655 5566777666666554 4445567777  79999999996656667888999999999998878788


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH--HHHHHHHHHHHHhh
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYLS  293 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~  293 (530)
                      .++++|++|.++++|.++..++++.++|+|.|++ ++ ...++++|...|++.+++.++.+.-.  .++.++.|+|+|||
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA-GD-S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA-GD-SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc-CC-chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            8999999999999999999999999999999999 44 35689999999999999999987654  78999999999999


Q ss_pred             cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647          294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  373 (530)
Q Consensus       294 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~  373 (530)
                      ++....-..-.-..++|.|..++ .+.+++++..|+|+|++++.+..+.++.+++.      |..+.|+.+|.|++..|+
T Consensus       230 RGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~------g~~~RLvElLs~~sa~iq  302 (526)
T COG5064         230 RGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDV------GIPGRLVELLSHESAKIQ  302 (526)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhc------CCcHHHHHHhcCcccccc
Confidence            97433222222234688888888 68899999999999999999999999999976      599999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChH
Q 009647          374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS  453 (530)
Q Consensus       374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~  453 (530)
                      ..|+..++||..|++.+.+.+++.|+++.+-.+|.++...+++||||+|+|++.+.          .+|++++++.+++|
T Consensus       303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn----------teqiqavid~nliP  372 (526)
T COG5064         303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN----------TEQIQAVIDANLIP  372 (526)
T ss_pred             CHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC----------HHHHHHHHhcccch
Confidence            99999999999999999999999999999999999999999999999999998743          48999999999999


Q ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCc-chhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          454 GFIDLVRSADIEAARLGLQFMELVLRGMPNHE-GTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       454 ~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~-~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      +|+++|.+.+.++.+.+.+++.|...++-+-+ .-+.+.+.|.++.|..+..-.+..|-+.+..-++..
T Consensus       373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni  441 (526)
T COG5064         373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI  441 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence            99999999999999999999999987664322 246777889999999988776666666666666544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.4e-28  Score=228.20  Aligned_cols=349  Identities=19%  Similarity=0.211  Sum_probs=292.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PAL  180 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v  180 (530)
                      +++.|+..+..|..++-++.-...+.-  .+++.+++..|+.-+-.+. .++|+.|..|++|++.-++ .+..+.  |++
T Consensus        94 lqs~d~~Iq~aa~~alGnlAVn~enk~--liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~-nk~kiA~sGaL  169 (550)
T KOG4224|consen   94 LQSCDKCIQCAAGEALGNLAVNMENKG--LIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDS-NKVKIARSGAL  169 (550)
T ss_pred             HhCcchhhhhhhhhhhccceeccCCce--EEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcccc-chhhhhhccch
Confidence            359999999999999988755555543  3667777766665555444 4678889999999997643 344443  899


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                      .+++++-++ .+..++..+..+|.|+.. +.+.|..++..|++|.|++++++.++.++..|+.+++|++-..   ..+..
T Consensus       170 ~pltrLaks-kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~---~~Rk~  244 (550)
T KOG4224|consen  170 EPLTRLAKS-KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR---RARKI  244 (550)
T ss_pred             hhhHhhccc-chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH---HHHHH
Confidence            999995554 889999999999999996 7799999999999999999999999999999999999998652   33444


Q ss_pred             HHhhc--hHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          261 IKVDG--LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       261 v~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      +...+  .+|.|+.++.++++.++..|..+|.+|+. +.++...++++|.+|.++++| .++..........|+.||+-.
T Consensus       245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccc
Confidence            44455  99999999999999999999999999998 567888899999999999999 477667777888899999866


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      .-... -++      +.|++.+|+.+|..++. .++-.|.-+|.|+++.+......+++.|.+|.++.++.++...+|.+
T Consensus       323 plNe~-lI~------dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse  395 (550)
T KOG4224|consen  323 PLNEV-LIA------DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE  395 (550)
T ss_pred             cCccc-cee------cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence            53322 234      45799999999988765 59999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      ...+++-++.+.           ....++.+.|+++.|+.++.+.+.++..++..+|.|+...
T Consensus       396 isac~a~Lal~d-----------~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  396 ISACIAQLALND-----------NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHHHHHHHhcc-----------ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            988998888753           3457899999999999999999999999999999998753

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2e-26  Score=217.12  Aligned_cols=351  Identities=18%  Similarity=0.233  Sum_probs=295.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CC
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA  179 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~  179 (530)
                      .+.++..+.|..++.++.++....++.  ..+..+|++.++.++-++.+ ...|+.|..+|.|+.... +.++.++  |+
T Consensus       134 qmmtd~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~-EnRr~LV~aG~  209 (550)
T KOG4224|consen  134 QMMTDGVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSR-ENRRVLVHAGG  209 (550)
T ss_pred             HhcCCCcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhh-hhhhhhhccCC
Confidence            334677889999999999997775544  45888999999999656554 567889999999998654 4566666  89


Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC--ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      +|.|+.++.+ .++++++.|..+++||+.| ...|+.+.+.+  .+|.|+.++.++++.+...|..+|.||+...  ...
T Consensus       210 lpvLVsll~s-~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq  285 (550)
T KOG4224|consen  210 LPVLVSLLKS-GDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQ  285 (550)
T ss_pred             chhhhhhhcc-CChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhh
Confidence            9999999998 7999999999999999985 58899999998  9999999999999999999999999999753  455


Q ss_pred             hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      ++++ ..|.+|.++++|+++.-........|+.|++- .+-+...+.++|.+.+||++|....+++++..|..+|.|++.
T Consensus       286 ~eiv-~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa  363 (550)
T KOG4224|consen  286 REIV-EAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA  363 (550)
T ss_pred             hHHH-hcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence            6665 69999999999998877777778889999987 455566788999999999999655667799999999999998


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      ........+.+      .|++|.+..++.+...+++.+...+++.++.. +.....+.+.|++|.|+.++.+.+.+++-.
T Consensus       364 sse~n~~~i~e------sgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN  436 (550)
T KOG4224|consen  364 SSEHNVSVIRE------SGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGN  436 (550)
T ss_pred             hhhhhhHHHhh------cCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhccc
Confidence            77777777775      47999999999999999999999999988764 466788999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHh------cCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      |+.+|.|++..           +++...+++      .|+-..|..++.+.+..+...+.+.+..++..
T Consensus       437 aAaAL~Nlss~-----------v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  437 AAAALINLSSD-----------VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED  494 (550)
T ss_pred             HHHHHHhhhhh-----------hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            99999999874           234444443      35566788899988888888999999888854

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.93  E-value=2.7e-22  Score=213.18  Aligned_cols=374  Identities=20%  Similarity=0.236  Sum_probs=294.5

Q ss_pred             HHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhc
Q 009647          111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLG  188 (530)
Q Consensus       111 ~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~  188 (530)
                      ...|...|-++....  .-...+.+.|+|+.|+.+|.+++ .++..-++++|.++|.... ++..+.  |+||.|++++.
T Consensus       266 lrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  266 LRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhc
Confidence            334555566663222  22246778999999999999876 6677889999999997654 555555  89999999998


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 009647          189 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD  268 (530)
Q Consensus       189 ~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~  268 (530)
                      + ++.+++..++++|.|++.| +..|..++..|++|.|+.+|.+++  .+..++..|.+|+..+.   .+..+...+++|
T Consensus       342 s-~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~---~r~~f~~TdcIp  414 (708)
T PF05804_consen  342 S-ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE---ARSMFAYTDCIP  414 (708)
T ss_pred             C-CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh---hHHHHhhcchHH
Confidence            7 7889999999999999995 688999999999999999998654  55668889999997643   344555678999


Q ss_pred             HHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhc
Q 009647          269 AILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVL  347 (530)
Q Consensus       269 ~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i  347 (530)
                      .+++++. .+++.+..++++.+.||+. +..+.+.+.+.|+++.|++...+..+    .-.+..+.|++.+++.....+.
T Consensus       415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~  489 (708)
T PF05804_consen  415 QLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFV  489 (708)
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHH
Confidence            9998765 4567788889999999998 56778889998999999987754333    2345789999988743322232


Q ss_pred             ccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--ChhHHHHHHHHHHH
Q 009647          348 VPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGN  424 (530)
Q Consensus       348 ~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--~~~v~~eA~~aL~n  424 (530)
                              +++..|+.++.++ +.+...+++.+|+|++..+....+.+.+.+++|.|.++|..+  +.++.-|++..++.
T Consensus       490 --------~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gt  561 (708)
T PF05804_consen  490 --------DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGT  561 (708)
T ss_pred             --------HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence                    5788888888765 568999999999999887655666666789999999999643  45899999999999


Q ss_pred             hcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH
Q 009647          425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF  502 (530)
Q Consensus       425 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L  502 (530)
                      ++..+           +....+.+.|+++.|+++|..  .|.+++...+-+++.++.+.+.  ...++.+.+....|..|
T Consensus       562 la~d~-----------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL  628 (708)
T PF05804_consen  562 LASDP-----------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET--REVLLKETEIPAYLIDL  628 (708)
T ss_pred             HHCCH-----------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHH
Confidence            98742           345677799999999999997  5688999999999999976431  23456778888999999


Q ss_pred             hcCCcHHHHHHHHHHHHhh
Q 009647          503 QFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       503 ~~~~~~~i~~~A~~il~~~  521 (530)
                      .++.|++|++.|...|+-.
T Consensus       629 ~~d~N~~ir~~~d~~Ldii  647 (708)
T PF05804_consen  629 MHDKNAEIRKVCDNALDII  647 (708)
T ss_pred             hcCCCHHHHHHHHHHHHHH
Confidence            9999999999886655533

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.85  E-value=6.6e-19  Score=187.41  Aligned_cols=352  Identities=18%  Similarity=0.202  Sum_probs=273.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      +.-|++++   .+++.+..+.++..|+++ |.... ....+.+.|+||+|++++.+++ ..++..|.++|.|+|.+.. .
T Consensus       292 V~~Lv~~L---dr~n~ellil~v~fLkkL-Si~~E-NK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~-~  364 (708)
T PF05804_consen  292 VSLLVKCL---DRENEELLILAVTFLKKL-SIFKE-NKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPE-L  364 (708)
T ss_pred             HHHHHHHH---cCCCHHHHHHHHHHHHHH-cCCHH-HHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHH-H
Confidence            44455555   588999999999999998 54332 3578899999999999999876 5566779999999998765 4


Q ss_pred             HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhh
Q 009647          173 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLI  249 (530)
Q Consensus       173 ~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~  249 (530)
                      +..++  |.+|.|+.+|.+   +..+..|+.+|.|++.+ ++.|..+...+++|.+++++- .++..+...+++.+.||+
T Consensus       365 R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa  440 (708)
T PF05804_consen  365 RSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA  440 (708)
T ss_pred             HHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence            56666  899999999976   34667799999999985 588999999999999999765 456777778899999999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          250 KGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       250 ~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      ..+  + ..+.+...++++.|++... ..|+-    .+..+.|++..+......+  .+.+..|+..+....+++....+
T Consensus       441 ~~~--r-naqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~  511 (708)
T PF05804_consen  441 LNK--R-NAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVEC  511 (708)
T ss_pred             cCH--H-HHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHH
Confidence            763  2 3345556788999886654 34432    2358889998653333333  25778888888655678889999


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  406 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l  406 (530)
                      +.+|+|+...+....+.+.      +.+++|.|..+|..+  .+++.-+++..++.++. .+.....+.+.|+++.|+.+
T Consensus       512 LGiLaNL~~~~ld~~~ll~------~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~L  584 (708)
T PF05804_consen  512 LGILANLTIPDLDWAQLLQ------EYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIEL  584 (708)
T ss_pred             HHHHHhcccCCcCHHHHHH------hCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHH
Confidence            9999999977655555444      357999999999755  45799999999999975 45666667789999999999


Q ss_pred             hcC--CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          407 LST--SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       407 L~~--~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      |..  .|.++.-..++++..+..+.           +.+..++ +.+++..|++++.++++++...|=.+|.-|..+.+
T Consensus       585 L~~kqeDdE~VlQil~~f~~ll~h~-----------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  585 LNAKQEDDEIVLQILYVFYQLLFHE-----------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HHhhCchHHHHHHHHHHHHHHHcCh-----------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            954  45678888999999999873           3355665 57899999999999999999988888888876543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=1.1e-18  Score=181.59  Aligned_cols=406  Identities=19%  Similarity=0.187  Sum_probs=287.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .-.++++.+.++.+.++..|-.|...+..+ +..++.-...+-+.|.||.||.+|.+.. .++|..|+|+|.|+..++..
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHl-cfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~  308 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHL-CFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKST  308 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHH-HhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCC
Confidence            334555555555699999999999888887 6666665567778999999999999876 78889999999999988765


Q ss_pred             --hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--------------
Q 009647          172 --ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--------------  233 (530)
Q Consensus       172 --~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--------------  233 (530)
                        +..++.  ++||.++.+|....+.+++++...+|+|+++. +.++..++. .++..|...+-.+              
T Consensus       309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~  386 (717)
T KOG1048|consen  309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAE  386 (717)
T ss_pred             cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccc
Confidence              555665  79999999999767899999999999999983 455555554 4566666543211              


Q ss_pred             ChhHHHHHHHHHHHhhcCCCCCchhhH-HHhhchHHHHHHHhc------cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 009647          234 KGSTVRTAAWALSNLIKGPDPKPATEL-IKVDGLLDAILRHLK------RADEELTTEVAWVVVYLSALSNVATSLLVKS  306 (530)
Q Consensus       234 ~~~~~~~a~~~L~nL~~~~~~~~~~~~-v~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~  306 (530)
                      +..+..+++.||.|++...  ...++. -...|.+..|+..++      ..|...+++|...|.||+..-        +.
T Consensus       387 ~~~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl--------~~  456 (717)
T KOG1048|consen  387 DSTVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRL--------EA  456 (717)
T ss_pred             cceeeehhhhhhccccchh--HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchh--------hh
Confidence            3678999999999998642  233433 335688999988876      346678899999999998621        11


Q ss_pred             CchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccch-------hcccCC--CcchhhHHHHHHHhc-cCcHhHH
Q 009647          307 GVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISD-------VLVPGH--GITDQVIAVLVKCLK-SEHRVLK  373 (530)
Q Consensus       307 g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~-------~i~~g~--~~~~~~l~~L~~lL~-~~~~~i~  373 (530)
                      .+.+.....+....   ...-......|++.-....+...+.       ...-|.  .+...++..-..+|. +.++.+.
T Consensus       457 Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl  536 (717)
T KOG1048|consen  457 EVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL  536 (717)
T ss_pred             hcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH
Confidence            22333332221110   0000112333444333221111000       000011  133456666555554 4567889


Q ss_pred             HHHHHHHHHHhcCCH----HHHHHH-HhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          374 KEAAWVLSNIAAGSV----EHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       374 ~~A~~~Lsnl~~~~~----~~~~~l-i~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                      +.++.+|.|++++..    ..+..+ ....++|+|+.+|+.++.+|.+.++.+|.|++.+.            ..+.++.
T Consensus       537 EasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~------------rnk~lig  604 (717)
T KOG1048|consen  537 EASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI------------RNKELIG  604 (717)
T ss_pred             HHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc------------hhhhhhh
Confidence            999999999999742    333444 46789999999999999999999999999999863            3467888


Q ss_pred             cCChHHHHhhhccCC------HHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-cHHHHHHHHHHHHhh
Q 009647          449 RGCLSGFIDLVRSAD------IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKY  521 (530)
Q Consensus       449 ~g~i~~L~~lL~~~d------~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~~~i~~~A~~il~~~  521 (530)
                      .++|+.|++.|....      .+++..++..|.+|+...  ..+.+.+.+.+|+++|..|..+. ++...+.|..++...
T Consensus       605 k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~--~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l  682 (717)
T KOG1048|consen  605 KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN--VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL  682 (717)
T ss_pred             cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh--HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence            999999999998743      578888889999998532  23577888999999998886554 678999999999988


Q ss_pred             cCCC
Q 009647          522 FGED  525 (530)
Q Consensus       522 f~~~  525 (530)
                      |.+.
T Consensus       683 W~y~  686 (717)
T KOG1048|consen  683 WQYK  686 (717)
T ss_pred             HHHH
Confidence            8764

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.4e-17  Score=170.56  Aligned_cols=388  Identities=18%  Similarity=0.182  Sum_probs=284.0

Q ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647           95 ELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  173 (530)
Q Consensus        95 ~l~~~l~~l~s~-d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~  173 (530)
                      .+.+++++++.. |+..|++|+..|..+|+........-+--.-+||.|+.+|+...+.+++..|++||++++.--++..
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            677788877666 9999999999999999876544333222245899999999988888998999999999997777777


Q ss_pred             Hhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcC
Q 009647          174 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG  251 (530)
Q Consensus       174 ~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~  251 (530)
                      ..++  ++||.|+.-|..-+..+|.||++.+|-.|+.+.+   ..+++.|++-..+.+|.--...+++.|+-+.+|.|..
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777  5999999877665778999999999999998553   4788999999999999877788999999999999986


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC---CchhHHHHHhcCchHHHHHHHhcCC---Cccch
Q 009647          252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLATSN---SLQLL  325 (530)
Q Consensus       252 ~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~v~  325 (530)
                      -.+. .+..|  ..++|.|..+|.+.|...++.+|-|+.+++++   .++..+.+...|++.....+|.-.+   +..+.
T Consensus       325 i~sd-~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  325 IRSD-EFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             CCCc-cchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            4333 34454  58999999999999999999999999999985   5677888899999999999885221   22344


Q ss_pred             hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC-------------------------------------
Q 009647          326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-------------------------------------  368 (530)
Q Consensus       326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-------------------------------------  368 (530)
                      +-.++.|..++++.+.....++.      .++...|..+|.+.                                     
T Consensus       402 ~~vIrmls~msS~~pl~~~tl~k------~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~  475 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSPLLFRTLLK------LDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEG  475 (1051)
T ss_pred             hHHHHHHHHHccCChHHHHHHHH------hhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccc
Confidence            56777788777775433222221      11222222222110                                     


Q ss_pred             -----------cHhHHHHHHH------------------HHH-------------HHhc---------CCHHHHHHHHhC
Q 009647          369 -----------HRVLKKEAAW------------------VLS-------------NIAA---------GSVEHKQLIHSS  397 (530)
Q Consensus       369 -----------~~~i~~~A~~------------------~Ls-------------nl~~---------~~~~~~~~li~~  397 (530)
                                 .....-++.|                  .+.             +.-.         ..++..+.++. 
T Consensus       476 i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-  554 (1051)
T KOG0168|consen  476 IFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-  554 (1051)
T ss_pred             eeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-
Confidence                       0000000110                  001             1111         11233344433 


Q ss_pred             CcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647          398 EALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFME  475 (530)
Q Consensus       398 ~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~i~~~~L~~L~  475 (530)
                      .++|.|+++.. +.++.|+..++.||..+++...         .+.+..++ +..+=..+-.+|.++|..++..+|+..+
T Consensus       555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~---------seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAE  625 (1051)
T KOG0168|consen  555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN---------SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAE  625 (1051)
T ss_pred             HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC---------HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence            37899999985 4689999999999999987542         25566666 4556666777999999999999999999


Q ss_pred             HHHccCCCCcchhHHHHhchHHHHHHHhcC
Q 009647          476 LVLRGMPNHEGTKLVEREDGIDAMERFQFH  505 (530)
Q Consensus       476 ~il~~~~~~~~~~~i~~~ggl~~L~~L~~~  505 (530)
                      .|++..++ .+...|...|.+..+.+|...
T Consensus       626 iLmeKlpd-~F~~~F~REGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  626 ILMEKLPD-TFSPSFRREGVFHAVKQLSVD  654 (1051)
T ss_pred             HHHHHhHH-HhhhhHhhhhHHHHHHHHhcc
Confidence            99988776 456778889999999988763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=5.7e-16  Score=167.40  Aligned_cols=366  Identities=23%  Similarity=0.238  Sum_probs=275.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcCChh
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS--PDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~--~~~~~~eA~~~L~nia~~~~~  171 (530)
                      +--..++.++...|.   .+-...|+.+-+... .. ..+..+|.+|.|+++|.-.+  ..+.++.|-.+|+||...+++
T Consensus       197 ets~sllsml~t~D~---ee~ar~fLemSss~e-sC-aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD  271 (2195)
T KOG2122|consen  197 ETSNSLLSMLGTDDE---EEMARTFLEMSSSPE-SC-AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD  271 (2195)
T ss_pred             hhhhHHhhhcccCCH---HHHHHHHHHhccCch-hh-HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence            333355555555665   455666777633332 22 34667999999999997433  345567799999999987765


Q ss_pred             hHHh--hcCCcHHHH----------HhhcCC----CC--HHHH-HHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC
Q 009647          172 ETKA--LLPALPLLI----------AHLGEK----SS--SPVA-EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP  232 (530)
Q Consensus       172 ~~~~--i~~~v~~L~----------~lL~~~----~~--~~v~-~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~  232 (530)
                      ....  .+.+++.|-          .+|...    .+  .+-+ -.|+.+|-.++. +++.|..+-+.|++..+..|+.-
T Consensus       272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~v  350 (2195)
T KOG2122|consen  272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQV  350 (2195)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHH
Confidence            5321  111222222          122211    01  1222 367888888888 58999999999999999998862


Q ss_pred             C------------ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647          233 N------------KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  300 (530)
Q Consensus       233 ~------------~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  300 (530)
                      .            ...+++.+..+|.||..|+... ...+....|++..++..|.+..+++..-.+.+|.||+...+.+.
T Consensus       351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N-Ka~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nm  429 (2195)
T KOG2122|consen  351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN-KATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNM  429 (2195)
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc-hhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccH
Confidence            1            3578999999999999986432 22344567999999999999988999999999999998655554


Q ss_pred             -HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc----HhHHHH
Q 009647          301 -SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKE  375 (530)
Q Consensus       301 -~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~----~~i~~~  375 (530)
                       ..+.+.|-+..|+..-.....+..++..|.+|.||+.+..+....+-+.     .|++..|+.+|...-    -.|...
T Consensus       430 KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV-----DGALaFLVg~LSY~~qs~tLaIIEs  504 (2195)
T KOG2122|consen  430 KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV-----DGALAFLVGTLSYEGQSNTLAIIES  504 (2195)
T ss_pred             HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc-----cchHHHHHhhccccCCcchhhhhhc
Confidence             4455678888888766555666788999999999998877766555543     489999999998752    367788


Q ss_pred             HHHHHHHHh---cCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          376 AAWVLSNIA---AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       376 A~~~Lsnl~---~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                      |-.+|.|+.   +.++.+.|.+.+++.+..|++.|++.+..+...||.+|+||...+      |    +.-++|++.|.+
T Consensus       505 aGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~------p----~DQq~LwD~gAv  574 (2195)
T KOG2122|consen  505 AGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS------P----EDQQMLWDDGAV  574 (2195)
T ss_pred             CccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC------H----HHHHHHHhcccH
Confidence            888888765   346789999999999999999999999999999999999998753      2    344899999999


Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          453 SGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      +.|.+++.++...+..-+..+|.|+|.+-
T Consensus       575 ~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  575 PMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.72  E-value=6.1e-14  Score=147.91  Aligned_cols=401  Identities=18%  Similarity=0.180  Sum_probs=286.3

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-  177 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-  177 (530)
                      ++.-++..+.+....++..|.+++.... + . .+ ..+..+.|...|.+++ +.++.-+++.|.+++.++......+. 
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~-~-~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~  117 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALS-P-D-SL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVD  117 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccC-H-H-HH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence            3334456778888888888999887442 2 2 22 5778899999999876 56777799999999988776666665 


Q ss_pred             -CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647          178 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP  256 (530)
Q Consensus       178 -~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~  256 (530)
                       +.++.++.+|.+ ++..|...|+.+|.+++.. +...+.++..+.++.|..++..++..++..+..++.+++...  ..
T Consensus       118 ~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~  193 (503)
T PF10508_consen  118 NELLPLIIQCLRD-PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS--PE  193 (503)
T ss_pred             ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HH
Confidence             589999999988 8899999999999999985 455567888889999999998878888888999999998653  34


Q ss_pred             hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc----chh-hhHHH
Q 009647          257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ----LLI-PVLRS  331 (530)
Q Consensus       257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~----v~~-~al~~  331 (530)
                      ..+.+...|+++.++..+.++|.-++.+++.+|..|+. .+...+.+.+.|+++.|++++.......    +.. ..+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            56677778999999999999888899999999999999 7778899999999999999996432222    233 34588


Q ss_pred             HhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHH-HhC-Cc----HHHHHH
Q 009647          332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSS-EA----LALLLH  405 (530)
Q Consensus       332 L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~l-i~~-~~----l~~Li~  405 (530)
                      .|+++...+...-...       ..++..+..++.+.++..+..|.-+++.|+. +.+..+.+ ... +.    +..+..
T Consensus       273 ~g~la~~~~~~v~~~~-------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~  344 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-------PAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGD  344 (503)
T ss_pred             HHHHHhcChHHHHHHH-------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHH
Confidence            8888876433322111       3466677777888999999999999999975 45666666 433 23    444444


Q ss_pred             HhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH---HHHhcCChH-HHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          406 LLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV---SLVGRGCLS-GFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       406 lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~---~l~~~g~i~-~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      ...++..++|..+..+++++.......  ..+.+.....   .....+... .+.++++.+=+++...++..|..++...
T Consensus       345 ~~~~~~~~lk~r~l~al~~il~~~~~~--~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~  422 (503)
T PF10508_consen  345 AIKSGSTELKLRALHALASILTSGTDR--QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP  422 (503)
T ss_pred             HhcCCchHHHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence            556777899999999999996543211  1111111111   122345555 7888898888999999999999997531


Q ss_pred             CCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          482 PNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       482 ~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                       ++ ...+....|.++.|-+=....+++..++=..+++.+
T Consensus       423 -Wg-~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l  460 (503)
T PF10508_consen  423 -WG-QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKAL  460 (503)
T ss_pred             -HH-HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHH
Confidence             21 122333344444442223334556655555555444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.4e-13  Score=129.57  Aligned_cols=320  Identities=17%  Similarity=0.182  Sum_probs=237.5

Q ss_pred             cCCHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCch
Q 009647          136 AGAIPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       136 ~g~v~~Lv~lL~~--~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      .|..|.++..+..  ..+..+.+.+..+|..+..++++..+.  .+...++.+|..+ ++.++....+.++..-|...+.
T Consensus       103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da--~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~  180 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDA--EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEV  180 (461)
T ss_pred             CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhcc--ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHH
Confidence            4555555554432  222334467888888888776643221  3677788887653 4577888888888888887899


Q ss_pred             hHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchh-------hHHHhhchHHHHHHHhcc-CCHHHHH
Q 009647          213 FRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPAT-------ELIKVDGLLDAILRHLKR-ADEELTT  283 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~-------~~v~~~~~l~~L~~lL~~-~d~~v~~  283 (530)
                      +|+.+++.++++.+...|.. ....+++.++|+++.|...++-...+       ..+...+++..|...+.- -||+++.
T Consensus       181 nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~  260 (461)
T KOG4199|consen  181 NRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLV  260 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHH
Confidence            99999999999999977764 45579999999999998765433211       223345678888888873 4789999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccch---hhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647          284 EVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL---IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV  360 (530)
Q Consensus       284 ~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~---~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~  360 (530)
                      +++.+|..|+- .++.++.+.+.|++..|++++.++++...+   ..+|..|..++ |+|.....+++      .|+++.
T Consensus       261 ~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~------~gg~~~  332 (461)
T KOG4199|consen  261 SLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVE------KGGLDK  332 (461)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHH------hcChHH
Confidence            99999999997 678899999999999999999765655544   46788888877 55566666664      579999


Q ss_pred             HHHHhc--cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-CC-hhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647          361 LVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SP-FDIKKEVAYVLGNLCVSPTEGEGKP  436 (530)
Q Consensus       361 L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-~~-~~v~~eA~~aL~nl~~~~~~~~~~~  436 (530)
                      ++.++.  +.+|.|..++|.+++-|+-..|++...+++.|+-...++.++. +. ..+|+.|||.|.|++..+       
T Consensus       333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-------  405 (461)
T KOG4199|consen  333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-------  405 (461)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-------
Confidence            999873  4578999999999999999999999999999999999999964 32 469999999999999764       


Q ss_pred             hhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHH
Q 009647          437 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMEL  476 (530)
Q Consensus       437 ~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~  476 (530)
                         .+++..++.. +++.|+..-....+..-..+-.+|.-
T Consensus       406 ---~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRD  441 (461)
T KOG4199|consen  406 ---AENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRD  441 (461)
T ss_pred             ---hhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHh
Confidence               2455555554 45667776666555544444444443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.67  E-value=3.5e-13  Score=142.19  Aligned_cols=384  Identities=21%  Similarity=0.222  Sum_probs=280.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhc
Q 009647          109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG  188 (530)
Q Consensus       109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~  188 (530)
                      ...++++..+...++..+      ..+...-+.++.+|...+ .+..-.++.+|..+..... ......+..+.|...|.
T Consensus        16 ~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~~-~~~l~~~~~~~L~~gL~   87 (503)
T PF10508_consen   16 AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTSN-REQVELICDILKRLLSALS-PDSLLPQYQPFLQRGLT   87 (503)
T ss_pred             cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Confidence            445666666666543321      122223344888888654 3333457778888876432 22223367888888998


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 009647          189 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD  268 (530)
Q Consensus       189 ~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~  268 (530)
                      + +++.|+..+++.|++++.++......+.+.++++.++.++.+++.++...|+.+|.+|+...  . ..+.+...+.++
T Consensus        88 h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~-~~~~l~~~~~~~  163 (503)
T PF10508_consen   88 H-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--E-GLEQLFDSNLLS  163 (503)
T ss_pred             C-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--h-hHHHHhCcchHH
Confidence            7 88999999999999999988888888999999999999999999999999999999999753  2 233444567789


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcc
Q 009647          269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV  348 (530)
Q Consensus       269 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~  348 (530)
                      .|..++..+++.++..++.++.+++..+++....+.+.|+++.++..|. ++|.-++.+++..|+.++. .+...+.+.+
T Consensus       164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~-~~~g~~yL~~  241 (503)
T PF10508_consen  164 KLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAE-TPHGLQYLEQ  241 (503)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHc-ChhHHHHHHh
Confidence            9999999888899999999999999989999999999999999999994 6787888999999999998 4455666664


Q ss_pred             cCCCcchhhHHHHHHHhccCc--H---h-HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          349 PGHGITDQVIAVLVKCLKSEH--R---V-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       349 ~g~~~~~~~l~~L~~lL~~~~--~---~-i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                            .|+++.|..++.+..  +   . +--..+...+|++...+..+..... .++..|.+++.+.|...+.-|..++
T Consensus       242 ------~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p-~~~~~l~~~~~s~d~~~~~~A~dtl  314 (503)
T PF10508_consen  242 ------QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP-AFLERLFSMLESQDPTIREVAFDTL  314 (503)
T ss_pred             ------CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHhCCCChhHHHHHHHHH
Confidence                  579999999996542  2   1 2233346677777754444332222 3566677777889999999999999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHH-Hhc-----CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcc-------hhH
Q 009647          423 GNLCVSPTEGEGKPKLIQEHLVSL-VGR-----GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-------TKL  489 (530)
Q Consensus       423 ~nl~~~~~~~~~~~~~~~~~~~~l-~~~-----g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~-------~~~  489 (530)
                      +.++...           +-...| ...     .++..+.....++..+++..+|+++.+|+........       ...
T Consensus       315 g~igst~-----------~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w  383 (503)
T PF10508_consen  315 GQIGSTV-----------EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW  383 (503)
T ss_pred             HHHhCCH-----------HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            9998642           223344 332     3566777777778889999999999999876543111       123


Q ss_pred             HHHhch--HH-HHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647          490 VEREDG--ID-AMERFQFHENEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       490 i~~~gg--l~-~L~~L~~~~~~~i~~~A~~il~~~f~~  524 (530)
                      ++..++  .. .+..+...+=++++-.|..++...+..
T Consensus       384 ~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  384 YESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            333332  22 456667777799999999988877654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=7e-14  Score=131.63  Aligned_cols=307  Identities=15%  Similarity=0.209  Sum_probs=238.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647          104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGKQEETKALL--PAL  180 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v  180 (530)
                      .+++....++++.++..+....  |   .+.++.++..++.+|... ++.++..-...++..-|-++..+++.++  ++.
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            4667777788888887764322  2   267888999999999743 3334444566777777777777777777  688


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc---------hhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhc
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGE---------EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIK  250 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~---------~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~  250 (530)
                      |.+.+.|......++...+.|++.-+..|++         .....+...|++..|+..++.. ++.+...++.+|..|+-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            8888788775666788999999999987653         3445677788999999999853 78899999999999986


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCCH----HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-CCccch
Q 009647          251 GPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLL  325 (530)
Q Consensus       251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~  325 (530)
                      .+  +.+.++ .+.|++..+++++.+.+.    +....++..|..|+- +++....+++.|+.+.++.++..+ .+|.+.
T Consensus       272 r~--E~C~~I-~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi  347 (461)
T KOG4199|consen  272 RD--EICKSI-AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVI  347 (461)
T ss_pred             HH--HHHHHH-HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHH
Confidence            53  355544 479999999999987443    355678888888884 777888999999999999888755 577888


Q ss_pred             hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-cC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHH
Q 009647          326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL  403 (530)
Q Consensus       326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~L  403 (530)
                      ..++.+++-++-..++....+++.      |+-...++.++ |+ ...+++.|||.|.||+..+.+++..++.. +++.|
T Consensus       348 ~~~~a~i~~l~LR~pdhsa~~ie~------G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~L  420 (461)
T KOG4199|consen  348 QEVMAIISILCLRSPDHSAKAIEA------GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKL  420 (461)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHhc------chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHH
Confidence            899999999999888888888875      46667777775 44 34899999999999999998888888886 57888


Q ss_pred             HHHhcCCChhHHHHHHHHHHHhc
Q 009647          404 LHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       404 i~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      ++.-...++.....|-.+|..+-
T Consensus       421 i~~A~~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  421 IRTAKANHETCEAAAKAALRDLG  443 (461)
T ss_pred             HHHHHhcCccHHHHHHHHHHhcC
Confidence            88887777777777777887774

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.66  E-value=4.8e-15  Score=154.57  Aligned_cols=363  Identities=17%  Similarity=0.114  Sum_probs=257.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEF-PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~-~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      +..|+.++..+.+...+++.+|+.+||+++-...+ ...-.|.+.++||.++++|....+.+++..++.+|+|+++.+. 
T Consensus       274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-  352 (717)
T KOG1048|consen  274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-  352 (717)
T ss_pred             hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-
Confidence            44556666666799999999999999999654333 3445788899999999999976667787779999999998743 


Q ss_pred             hHHhhc-CCcHHHHHhhcCC---------C----CHHHHHHHHHHHHhhcCCCchhHHHHHhc-CChhhhHhhcCC----
Q 009647          172 ETKALL-PALPLLIAHLGEK---------S----SSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP----  232 (530)
Q Consensus       172 ~~~~i~-~~v~~L~~lL~~~---------~----~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~lL~~----  232 (530)
                      .+..++ .+++.|....-.+         +    +.++...+..||.|++..+.+.|..+.++ |.|..|+..+++    
T Consensus       353 lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~  432 (717)
T KOG1048|consen  353 LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK  432 (717)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence            444444 6777776654321         1    25788999999999999899999998876 789999988873    


Q ss_pred             --CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH----HHHHHHHHHHHHhhcCCch--------
Q 009647          233 --NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNV--------  298 (530)
Q Consensus       233 --~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~--------  298 (530)
                        .+...++||+..|.||...-.          ..+.|.....+...+.    .-......|+..-....++        
T Consensus       433 ~~~d~K~VENcvCilRNLSYrl~----------~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~p  502 (717)
T KOG1048|consen  433 SDLDSKSVENCVCILRNLSYRLE----------AEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIP  502 (717)
T ss_pred             ccccchhHHHHHHHHhhcCchhh----------hhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCc
Confidence              478899999999999985311          1122222222221110    0011333333333322111        


Q ss_pred             -------hHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647          299 -------ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  371 (530)
Q Consensus       299 -------~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~  371 (530)
                             ....+....++..-..+|..+.++.+++.+..+|-|++.+.......+.. ..-....++|+|+.+|...+..
T Consensus       503 e~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~-~v~~kekgl~~l~~ll~~~~~~  581 (717)
T KOG1048|consen  503 ERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRG-AVFRKEKGLPPLVELLRNDDSD  581 (717)
T ss_pred             ccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHh-hhhhhccCccHHHHHHhcCCch
Confidence                   11122333345554556666778889999999999999887543322210 0001457899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 009647          372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS  445 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~  445 (530)
                      |.+.++.+|.|++.+-  ..+.++..++++.|++.|..+      +.++...+|.+|.|+....          .+..+.
T Consensus       582 vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~----------~~nAkd  649 (717)
T KOG1048|consen  582 VVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN----------VLNAKD  649 (717)
T ss_pred             HHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh----------HHHHHH
Confidence            9999999999998753  445566788999999999543      2578889999999998632          366788


Q ss_pred             HHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHc
Q 009647          446 LVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLR  479 (530)
Q Consensus       446 l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~  479 (530)
                      +.+.+.++.|+.+..+. +++..+.+-..|..|..
T Consensus       650 l~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  650 LLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            99999999999998874 46888888777777754

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=1.6e-14  Score=140.25  Aligned_cols=254  Identities=12%  Similarity=0.086  Sum_probs=195.4

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      .++.|+.+|.+ ++..++..|+|+|+.+-.           ..+++.+..+++++++.++..++|+|+.|-...  ..  
T Consensus        24 ~~~~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~--   87 (280)
T PRK09687         24 NDDELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RC--   87 (280)
T ss_pred             cHHHHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cc--
Confidence            57888999987 789999999999998753           235677888899999999999999999986421  11  


Q ss_pred             hHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          259 ELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       259 ~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                          ...++|.|..+ ++++++.|+..++.+|++++......     ...++..+...+ .++++.|+..+.++||++-.
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence                23567888877 67788999999999999997532211     112344555556 46788999999999987631


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                                       ...++.|+.+|.++++.||..|+++|+.+..+++.         +++.|+.+|.+.+..|+.+
T Consensus       158 -----------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~  211 (280)
T PRK09687        158 -----------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIE  211 (280)
T ss_pred             -----------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHH
Confidence                             24889999999999999999999999999444432         6788999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID  497 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~  497 (530)
                      |+|+|+.+-.                     ..++++|++.|..++.  ...+.++|..+    ..         .-.++
T Consensus       212 A~~aLg~~~~---------------------~~av~~Li~~L~~~~~--~~~a~~ALg~i----g~---------~~a~p  255 (280)
T PRK09687        212 AIIGLALRKD---------------------KRVLSVLIKELKKGTV--GDLIIEAAGEL----GD---------KTLLP  255 (280)
T ss_pred             HHHHHHccCC---------------------hhHHHHHHHHHcCCch--HHHHHHHHHhc----CC---------HhHHH
Confidence            9999998621                     1367899999988773  44556666655    11         13567


Q ss_pred             HHHHHhc-CCcHHHHHHHHHHHHh
Q 009647          498 AMERFQF-HENEDLRNMANGLVDK  520 (530)
Q Consensus       498 ~L~~L~~-~~~~~i~~~A~~il~~  520 (530)
                      .|.++.. +++..+..+|.+.|++
T Consensus       256 ~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        256 VLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHHhhCCChhHHHHHHHHHhc
Confidence            7777775 8899999999888764

>PRK09687 putative lyase; Provisional

Probab=99.64  E-value=2.3e-14  Score=139.10  Aligned_cols=254  Identities=13%  Similarity=0.068  Sum_probs=195.9

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHH
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  217 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  217 (530)
                      -++.|..+|.+.+ ..++..|+++|..+....         +++.+..++.+ +++.+|..|+|+|+.|.... ..    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~~---------~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~-~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQD---------VFRLAIELCSS-KNPIERDIGADILSQLGMAK-RC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcch---------HHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCc-cc----
Confidence            4667778887655 556677999998876321         46677788877 78999999999999986422 11    


Q ss_pred             HhcCChhhhHhh-cCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 009647          218 LSQGALPPLARM-MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS  296 (530)
Q Consensus       218 ~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  296 (530)
                       ...+++.|..+ ++++++.++..++.+|++++... +.+      ...+++.+...+.++++.|+..++++|+++..  
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--  157 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--  157 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence             12356777776 56788999999999999997542 111      12456667778888899999999999987753  


Q ss_pred             chhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHH
Q 009647          297 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEA  376 (530)
Q Consensus       297 ~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A  376 (530)
                               ..+++.|+.+| .++++.++..|..+||.+..++               ..+++.|+.+|.+.+..||..|
T Consensus       158 ---------~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~---------------~~~~~~L~~~L~D~~~~VR~~A  212 (280)
T PRK09687        158 ---------EAAIPLLINLL-KDPNGDVRNWAAFALNSNKYDN---------------PDIREAFVAMLQDKNEEIRIEA  212 (280)
T ss_pred             ---------HHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHhcCCChHHHHHH
Confidence                     13578888888 5788899999999999983222               2478899999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647          377 AWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI  456 (530)
Q Consensus       377 ~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~  456 (530)
                      +|+|+.+-  ++         .++|.|+..|.+++  ++..|+.+|+++-        +|             ..++.|.
T Consensus       213 ~~aLg~~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig--------~~-------------~a~p~L~  258 (280)
T PRK09687        213 IIGLALRK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELG--------DK-------------TLLPVLD  258 (280)
T ss_pred             HHHHHccC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcC--------CH-------------hHHHHHH
Confidence            99999872  32         27899999999876  6789999999983        22             2568899


Q ss_pred             hhhc-cCCHHHHHHHHHHHHH
Q 009647          457 DLVR-SADIEAARLGLQFMEL  476 (530)
Q Consensus       457 ~lL~-~~d~~i~~~~L~~L~~  476 (530)
                      .++. .+|+.++..+.++|..
T Consensus       259 ~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        259 TLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHhhCCChhHHHHHHHHHhc
Confidence            9997 7899999999888763

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.59  E-value=2.1e-13  Score=132.20  Aligned_cols=326  Identities=15%  Similarity=0.125  Sum_probs=235.6

Q ss_pred             HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCC------CCHHHHHHHHHHHH
Q 009647          133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEK------SSSPVAEQCAWALG  204 (530)
Q Consensus       133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~------~~~~v~~~a~~~L~  204 (530)
                      -|+++.+..|.+..++++ .++..++.++|+|+|..+.+.+.++.  |+-..++.+|...      .+.+...-+...|.
T Consensus        83 ~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~  161 (604)
T KOG4500|consen   83 CIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH  161 (604)
T ss_pred             hhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence            366778888888887774 55656799999999999999999988  7777777777541      23466777888999


Q ss_pred             hhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CCHHH
Q 009647          205 NVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEEL  281 (530)
Q Consensus       205 nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-~d~~v  281 (530)
                      |..-++...|..+++.|+++.|...+.-  ++....+.+.-.+.||...... -..++.......-.+++++.+ -.+++
T Consensus       162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e-~~~~~~~d~sl~~~l~~ll~~~v~~d~  240 (604)
T KOG4500|consen  162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE-MLYPFCKDCSLVFMLLQLLPSMVREDI  240 (604)
T ss_pred             HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH-hhhhhhccchHHHHHHHHHHHhhccch
Confidence            9999999999999999999999998763  3444444444444444321100 001112234455556666653 35567


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh-------hHHHHhhhhcCCccccchhcccCCCcc
Q 009647          282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP-------VLRSLGNLVAGDSSTISDVLVPGHGIT  354 (530)
Q Consensus       282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~-------al~~L~nl~~~~~~~~~~~i~~g~~~~  354 (530)
                      ..-+...|.+.++++.. .-.+.+.|.+..+++++...++..-.+.       ++....-+.+|++. -+.+..     +
T Consensus       241 ~eM~feila~~aend~V-kl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~-----~  313 (604)
T KOG4500|consen  241 DEMIFEILAKAAENDLV-KLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHA-----D  313 (604)
T ss_pred             hhHHHHHHHHHhcCcce-eeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhc-----C
Confidence            77788889999985443 3345678999999998864333322222       33333344455543 233333     2


Q ss_pred             hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-----CCChhHHHHHHHHHHHhcCCC
Q 009647          355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-----TSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-----~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      ..++..+..++.+.+......+..+|+|+++.+ .++..+++.+++..|+.+|.     +++..++..++.||.|++..-
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv  392 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV  392 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence            358999999999999999999999999998865 77888999999999999983     356789999999999998631


Q ss_pred             CCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647          430 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  479 (530)
Q Consensus       430 ~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~  479 (530)
                                 -....++..|+.+.+.-+|+...|+++..-+..+..+..
T Consensus       393 -----------~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d  431 (604)
T KOG4500|consen  393 -----------SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD  431 (604)
T ss_pred             -----------CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence                       234678899999999999999999998888887776654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.54  E-value=3.5e-12  Score=123.87  Aligned_cols=321  Identities=16%  Similarity=0.191  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHhcCChh---hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhH
Q 009647          153 EQLLEAAWCLTNIAAGKQE---ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA  227 (530)
Q Consensus       153 ~~~~eA~~~L~nia~~~~~---~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~  227 (530)
                      .+..+++.|+..++....+   .+...+  +++..|.+..++ ++.++-+|+.++|||||.|+.+.|+.+.+.|+-..++
T Consensus        57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi  135 (604)
T KOG4500|consen   57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI  135 (604)
T ss_pred             hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence            3456678888888843221   122222  467778888877 6889999999999999999999999999999988888


Q ss_pred             hhcCC---C----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCch
Q 009647          228 RMMLP---N----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNV  298 (530)
Q Consensus       228 ~lL~~---~----~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~  298 (530)
                      .+|++   .    +.+....+...|+|-.-+.  +..+..+...|++|.|...+.  ..+....+.......+|..--.+
T Consensus       136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~--~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDS--RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hhhccccccCCccHHHHHHHHHHHHHHhhCCc--HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            88873   1    2466777778888876543  334445557899999998875  34555555555554444431111


Q ss_pred             h-HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-Cc-------
Q 009647          299 A-TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EH-------  369 (530)
Q Consensus       299 ~-~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~-------  369 (530)
                      + .....+..+...++++|.....+.+....+..+...+..+....+ +.      +.|.+..++.++.. ++       
T Consensus       214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~-la------~~gl~e~~~~lv~~~k~~t~k~d~  286 (604)
T KOG4500|consen  214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLS-LA------QNGLLEDSIDLVRNMKDFTKKTDM  286 (604)
T ss_pred             hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeee-hh------hcchHHHHHHHHHhcccccchHHH
Confidence            1 122345667777888887666778888888888888765544333 33      35788888888865 21       


Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHHHhCC-cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSE-ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~-~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                      ...-+.++-...-+..|+ +..+.+...+ ++..+...+.+.+.+.+..++.+|+|+++.           ..++.++++
T Consensus       287 ~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-----------D~~ci~~v~  354 (604)
T KOG4500|consen  287 LNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-----------DDICIQLVQ  354 (604)
T ss_pred             HHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-----------chHHHHHHH
Confidence            234455555555555665 5566776655 889999999999999999999999999986           368999999


Q ss_pred             cCChHHHHhhhcc-----CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH
Q 009647          449 RGCLSGFIDLVRS-----ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA  498 (530)
Q Consensus       449 ~g~i~~L~~lL~~-----~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~  498 (530)
                      +|.+..|+++|..     +|.+.+..++.+|.|+.--.+   ++..+-..|..+.
T Consensus       355 ~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~---nka~~~~aGvtea  406 (604)
T KOG4500|consen  355 KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS---NKAHFAPAGVTEA  406 (604)
T ss_pred             HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC---chhhccccchHHH
Confidence            9999999999875     557889999999999874322   2334444554443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=1.8e-12  Score=123.25  Aligned_cols=227  Identities=18%  Similarity=0.200  Sum_probs=180.7

Q ss_pred             hhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647          263 VDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS  341 (530)
Q Consensus       263 ~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  341 (530)
                      ..+-++.|+.+|. +.|+.++..+++++++.+. .+.....+.+.|+++.+..+| ..+++.++..|+.+|.|++...+.
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh
Confidence            5678899999998 5689999999999999876 677888889999999999999 589999999999999999877665


Q ss_pred             ccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          342 TISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       342 ~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                      +.+  ++       ..++.+...+.+  .+..++..+..+|.|++..+ +....+.  +.+|.++.+|.+++..+|..++
T Consensus        88 ~~~--Ik-------~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vL  155 (254)
T PF04826_consen   88 QEQ--IK-------MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVL  155 (254)
T ss_pred             HHH--HH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHH
Confidence            543  22       256666665433  36689999999999997654 3333333  3799999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCC-------cc-----
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNH-------EG-----  486 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~~~~~-------~~-----  486 (530)
                      ++|.|++.++           ...+.++..+++..|+.++... +.++...+|..++||-......       .+     
T Consensus       156 k~L~nLS~np-----------~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L  224 (254)
T PF04826_consen  156 KVLVNLSENP-----------DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSL  224 (254)
T ss_pred             HHHHHhccCH-----------HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhH
Confidence            9999999763           5678999999999999999986 5778889999999997544321       11     


Q ss_pred             hhHHHHhc-hHHHHHHHhcCCcHHHHHHH
Q 009647          487 TKLVERED-GIDAMERFQFHENEDLRNMA  514 (530)
Q Consensus       487 ~~~i~~~g-gl~~L~~L~~~~~~~i~~~A  514 (530)
                      ..++.+.+ .-++|..|..|++++|+++.
T Consensus       225 ~~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  225 FSLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            13455555 45578889999999999874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.50  E-value=8.5e-12  Score=140.81  Aligned_cols=272  Identities=18%  Similarity=0.150  Sum_probs=209.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647           97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL  176 (530)
Q Consensus        97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i  176 (530)
                      ..++..|.++|+.++..|+..|.+.-            ..+.+|.|+..|..++ +.++..|+.+|..+....+      
T Consensus       624 ~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~------  684 (897)
T PRK13800        624 AELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP------  684 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC------
Confidence            34444556999999999999998861            1346889999996554 6677789999988853221      


Q ss_pred             cCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647          177 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP  256 (530)
Q Consensus       177 ~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~  256 (530)
                        ..+.|...|.+ +++.|+..|+.+|+.+....            ...|+..|.++++.++..|+++|..+-  .    
T Consensus       685 --~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~--~----  743 (897)
T PRK13800        685 --PAPALRDHLGS-PDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVD--D----  743 (897)
T ss_pred             --chHHHHHHhcC-CCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhccc--C----
Confidence              24677788887 78999999999999875322            345778889999999999999998752  1    


Q ss_pred             hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                                .+.|..++.+++++|+..++.+|..+....         ...++.|..++ .++++.++..|+.+|+++-
T Consensus       744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        744 ----------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT-GDPDPLVRAAALAALAELG  803 (897)
T ss_pred             ----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh-cCCCHHHHHHHHHHHHhcC
Confidence                      123567889999999999999999997532         22367778877 5778999999999999984


Q ss_pred             cCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      ...                .+.+.+...|.++++.||..|+++|+.+..  +         ..++.|+.+|.+++..||+
T Consensus       804 ~~~----------------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~  856 (897)
T PRK13800        804 CPP----------------DDVAAATAALRASAWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRK  856 (897)
T ss_pred             Ccc----------------hhHHHHHHHhcCCChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHH
Confidence            321                244668888999999999999999998732  1         2568999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647          417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  475 (530)
Q Consensus       417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~  475 (530)
                      +|+++|..+.       +.|    +         ..+.|...|+..|+.+...+.++|.
T Consensus       857 ~A~~aL~~~~-------~~~----~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        857 AAVLALTRWP-------GDP----A---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHHHhccC-------CCH----H---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999999872       111    1         2466788899999999999988875

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.49  E-value=6.3e-13  Score=112.58  Aligned_cols=117  Identities=31%  Similarity=0.538  Sum_probs=106.6

Q ss_pred             HHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC
Q 009647          132 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE  209 (530)
Q Consensus       132 ~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d  209 (530)
                      .+++.|++|.++++|..++ +..+..|+++|.+++.+.++....++  +++|.++.+|.+ +++.++..|+|+|+|++.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence            4678999999999999766 56777899999999999777777776  899999999998 7899999999999999998


Q ss_pred             CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647          210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  250 (530)
Q Consensus       210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~  250 (530)
                      .+..+..+...|+++.|++++...+..+++.++|+|.+||.
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            88888999999999999999999999999999999999973

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.48  E-value=3e-12  Score=121.65  Aligned_cols=195  Identities=21%  Similarity=0.191  Sum_probs=159.3

Q ss_pred             HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647          133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  210 (530)
Q Consensus       133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~  210 (530)
                      +++++-+..|+.+|+...++.++..|..++.|.+..+. ....+.  |+++.+..+|.+ +++.+++.|+|+|.|++.+ 
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~-   84 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVN-   84 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCC-
Confidence            46778889999999987778888889999999876543 333333  899999999998 8999999999999999985 


Q ss_pred             chhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHH
Q 009647          211 EEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV  288 (530)
Q Consensus       211 ~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~  288 (530)
                      .+.+..+-.  .++.+++.+.+  -+..++..++.+|.||+...+   ...++  ...+|.++.+|..++..++..++++
T Consensus        85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~---~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND---YHHML--ANYIPDLLSLLSSGSEKTKVQVLKV  157 (254)
T ss_pred             hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc---hhhhH--HhhHHHHHHHHHcCChHHHHHHHHH
Confidence            455655543  47777775543  378999999999999986532   23343  4789999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      |.||+. ++.....++.++++..++.++..+.+.++...++..+.||..+
T Consensus       158 L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  158 LVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999998 6677888889999999999997666788899999999999754

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=4.2e-11  Score=117.81  Aligned_cols=354  Identities=13%  Similarity=0.162  Sum_probs=248.8

Q ss_pred             HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC
Q 009647          131 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE  209 (530)
Q Consensus       131 ~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d  209 (530)
                      ..+..-++|..||..|..++ .++..-....|..++--......... |.|..|++++.. .+++++...+..+-|++.|
T Consensus       298 lKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD  375 (791)
T KOG1222|consen  298 LKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFD  375 (791)
T ss_pred             HHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhcccc
Confidence            35677899999999999876 34545677788888744332222222 799999999987 8999999999999999997


Q ss_pred             CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHH
Q 009647          210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV  288 (530)
Q Consensus       210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~  288 (530)
                      + -.|..+++.|.+|.|+.++.+.+..  ..|...+..++-++..   ..+..-..++|.+.+.+- ..+.++-.+.+..
T Consensus       376 ~-glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~---K~MfayTdci~~lmk~v~~~~~~~vdl~lia~  449 (791)
T KOG1222|consen  376 S-GLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDA---KAMFAYTDCIKLLMKDVLSGTGSEVDLALIAL  449 (791)
T ss_pred             c-cccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHH---HHHHHHHHHHHHHHHHHHhcCCceecHHHHHH
Confidence            5 7888999999999999999876422  3345555666544322   223334678888876554 4455665555555


Q ss_pred             HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC
Q 009647          289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE  368 (530)
Q Consensus       289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~  368 (530)
                      -.||+- +..+.+.+++...+..|++.-..+.++    -....+.||+.+.......+++        .+.-|...+...
T Consensus       450 ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--------yvgdLa~i~~nd  516 (791)
T KOG1222|consen  450 CINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--------YVGDLAGIAKND  516 (791)
T ss_pred             HHHHHh-ccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--------HHHHHHHHhhcC
Confidence            567776 445677778877888777654444442    3456677887776544444553        666777777654


Q ss_pred             -cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 009647          369 -HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS  445 (530)
Q Consensus       369 -~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~  445 (530)
                       +.....++..+++|++...-+..+.+-+.+++|.+-..|..+  ..++.-+.+-+++.++..           ......
T Consensus       517 ~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-----------~~cA~L  585 (791)
T KOG1222|consen  517 NSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-----------LDCARL  585 (791)
T ss_pred             chHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-----------hHHHHH
Confidence             457788999999999887666777777889999999988643  346777777777777653           133455


Q ss_pred             HHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHH
Q 009647          446 LVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLV  518 (530)
Q Consensus       446 l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il  518 (530)
                      +...|+|+.|+++|+.  .|.+.+...+-.+..++.+.  ....-++.+...-..+..|.+..|.+|++-+..-+
T Consensus       586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~L  658 (791)
T KOG1222|consen  586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNAL  658 (791)
T ss_pred             hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence            6688999999999996  45666666666666666541  12234666776667899999999999987654333

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.44  E-value=6.9e-11  Score=120.88  Aligned_cols=406  Identities=14%  Similarity=0.079  Sum_probs=267.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647          104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETKALL--PAL  180 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v  180 (530)
                      ...|++..+.|.....+++...+ ++...+++.|.+|.|+.+++..+ .++.+.+.+-++...+.++......++  ..+
T Consensus        19 ~~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l   97 (678)
T KOG1293|consen   19 LHLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL   97 (678)
T ss_pred             hcCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence            36889888999999999866554 34456899999999999998543 456666777777777888777777777  589


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch--hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE--FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~--~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      |.++++|+.+....+++..+.++.+|-.-++.  .........+++.+..++..+.....+.-+...+++|...   ...
T Consensus        98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~---~hq  174 (678)
T KOG1293|consen   98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK---DHQ  174 (678)
T ss_pred             HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc---hhh
Confidence            99999998843388999999999999875532  2223333345555555554344444444555555565443   122


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHH---HhhcCCchhHH----HHHhcCchHH-HHHHHhcCCCccchhhhHH
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVV---YLSALSNVATS----LLVKSGVLQL-LVERLATSNSLQLLIPVLR  330 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~L~~~~~~~~~----~i~~~g~l~~-Lv~lL~~~~~~~v~~~al~  330 (530)
                      -+...+++...+.-++.......+..+..+++   .+..+++....    ...+.|+.++ .+..|...++.+.+..++.
T Consensus       175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~  254 (678)
T KOG1293|consen  175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE  254 (678)
T ss_pred             heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence            23345677777777777777788999999999   66665554433    3345666664 3333335667666777777


Q ss_pred             HHhhhhcCCccc-c----chhccc-----------------CC-----------------------Ccchhh--------
Q 009647          331 SLGNLVAGDSST-I----SDVLVP-----------------GH-----------------------GITDQV--------  357 (530)
Q Consensus       331 ~L~nl~~~~~~~-~----~~~i~~-----------------g~-----------------------~~~~~~--------  357 (530)
                      ++-++..++-.. +    ....+.                 |.                       ..+...        
T Consensus       255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell  334 (678)
T KOG1293|consen  255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL  334 (678)
T ss_pred             HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence            777776554100 0    000000                 00                       000000        


Q ss_pred             --------------------------------------------HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647          358 --------------------------------------------IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL  393 (530)
Q Consensus       358 --------------------------------------------l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~  393 (530)
                                                                  ...+..+..+.+...+..||-++-+++..-......
T Consensus       335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg  414 (678)
T KOG1293|consen  335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG  414 (678)
T ss_pred             HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                        111111112334556666776766665432222222


Q ss_pred             HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647          394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF  473 (530)
Q Consensus       394 li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~  473 (530)
                      +-...+..+|++++..++..|+..+..+|+|++..-     +     .....++..|+|..+..++...|+.+...++++
T Consensus       415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-----s-----~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~  484 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-----S-----NLKSKFLRNNGIDILESMLTDPDFNSRANSLWV  484 (678)
T ss_pred             CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-----c-----cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence            334568999999999999999999999999998742     1     245789999999999999999999999999999


Q ss_pred             HHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647          474 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       474 L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~  524 (530)
                      |.+++-.+++ .....+..-=+-..|..+.++++..|++.+..++..+-..
T Consensus       485 Lr~l~f~~de-~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  485 LRHLMFNCDE-EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHhcchH-HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            9999866543 2222222222345677788999999999999999988654

>PTZ00429 beta-adaptin; Provisional

Probab=99.44  E-value=2.2e-10  Score=124.26  Aligned_cols=292  Identities=14%  Similarity=0.078  Sum_probs=213.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      +.+|...++   +.+...+..|++.+..++..+.+-       +.+.+-.+.++.+++ .++++-....+.+++..+++.
T Consensus        34 ~~ELr~~L~---s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pel  102 (746)
T PTZ00429         34 GAELQNDLN---GTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEK  102 (746)
T ss_pred             HHHHHHHHH---CCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHH
Confidence            355666554   788888999999988887776543       236777788888765 566666888899998776654


Q ss_pred             HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                      ..   -++..|.+-+.+ +++.+|-.|+.+|++|-.  +..-.     -.++++.+.+.++++.++++|+.|+..+.+..
T Consensus       103 al---LaINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        103 AL---LAVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             HH---HHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence            32   367788888887 799999999999999875  23222     24567888889999999999999999998643


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHH
Q 009647          253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL  332 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L  332 (530)
                       |.    .+...++++.|..+|.+.|+.|+.+|+.+|..+....+....  ...+.+..|+..|. .-++..+...+.+|
T Consensus       172 -pe----lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~-e~~EW~Qi~IL~lL  243 (746)
T PTZ00429        172 -MQ----LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLP-ECNEWGQLYILELL  243 (746)
T ss_pred             -cc----cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhh-cCChHHHHHHHHHH
Confidence             32    333568899999999999999999999999999875443332  33456777777773 55677788888888


Q ss_pred             hhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCC
Q 009647          333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSP  411 (530)
Q Consensus       333 ~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~  411 (530)
                      ......++.   ..        ..++..+...|+|.++.|.-+|+.++.+++... ++.+..+.. .+.++|+.++ +++
T Consensus       244 ~~y~P~~~~---e~--------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~  310 (746)
T PTZ00429        244 AAQRPSDKE---SA--------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRD  310 (746)
T ss_pred             HhcCCCCcH---HH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCC
Confidence            664322221   11        247888889999999999999999999997542 343333332 2446777764 566


Q ss_pred             hhHHHHHHHHHHHhcC
Q 009647          412 FDIKKEVAYVLGNLCV  427 (530)
Q Consensus       412 ~~v~~eA~~aL~nl~~  427 (530)
                      +++|.-++..|.-++.
T Consensus       311 ~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        311 AETQYIVCKNIHALLV  326 (746)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            7888888877766654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.42  E-value=2e-10  Score=123.30  Aligned_cols=327  Identities=16%  Similarity=0.147  Sum_probs=237.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  173 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~  173 (530)
                      .++.+.+...+ .+...+.+++..+-.+...+.+.       .-+.+..+.++.+.+ ...++-+..++..+...+++..
T Consensus         7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~   77 (526)
T PF01602_consen    7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELL   77 (526)
T ss_dssp             HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHH
T ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHH
Confidence            56677776333 47888999998888876666543       257888889988554 6676768888888888877633


Q ss_pred             HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      ..   ++..+.+-|.+ +++.++..|+.+|++++.  ++....     .++.+.+++.++++.+++.|+-++..+.+.. 
T Consensus        78 ~l---~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-  145 (526)
T PF01602_consen   78 IL---IINSLQKDLNS-PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKD-  145 (526)
T ss_dssp             HH---HHHHHHHHHCS-SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-
T ss_pred             HH---HHHHHHHhhcC-CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccC-
Confidence            22   66777778877 889999999999999984  454433     4678899999999999999999999999753 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                      |.    .+... +++.+.+++.++|+.++..|+.++..+ ..++.... -.-...++.|..++ ...++..+..+++.+.
T Consensus       146 p~----~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~  217 (526)
T PF01602_consen  146 PD----LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLR  217 (526)
T ss_dssp             HC----CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHT
T ss_pred             HH----HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHH
Confidence            22    33223 799999999999999999999999999 22222211 11123445555555 5788899999999999


Q ss_pred             hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChh
Q 009647          334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD  413 (530)
Q Consensus       334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~  413 (530)
                      .++...+.....         ..+++.+..++.+.++.|..+|+.++..+.... .     .-..++++|..++.++++.
T Consensus       218 ~~~~~~~~~~~~---------~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~n  282 (526)
T PF01602_consen  218 RYAPMEPEDADK---------NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPN  282 (526)
T ss_dssp             TSTSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHH
T ss_pred             hcccCChhhhhH---------HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccch
Confidence            988665443311         248888999999999999999999999886543 3     2223688999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647          414 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  479 (530)
Q Consensus       414 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~  479 (530)
                      ++..|+.+|..++...             ...+.  ..-..+..+..++|..++..+++.|..++.
T Consensus       283 vr~~~L~~L~~l~~~~-------------~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  283 VRYIALDSLSQLAQSN-------------PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HHHHHHHHHHHHCCHC-------------HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             hehhHHHHHHHhhccc-------------chhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            9999999999998631             11222  222223333447889999999999988863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.6e-09  Score=117.70  Aligned_cols=364  Identities=16%  Similarity=0.114  Sum_probs=241.7

Q ss_pred             HHHHH-HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---
Q 009647           94 EELKS-AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---  169 (530)
Q Consensus        94 ~~l~~-~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~---  169 (530)
                      +++.+ +++..+|+|+..|-.|+.-|..+...-.+....-+  ..+.+.|.+.+...+.+ ++..|+++++.++--.   
T Consensus       117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~  193 (1075)
T KOG2171|consen  117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN  193 (1075)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc
Confidence            44444 33566799999999999998887553322211001  12456667777766656 7778999999888433   


Q ss_pred             hhhHHhhcCCcHHHHHhhcC---CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHH
Q 009647          170 QEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWA  244 (530)
Q Consensus       170 ~~~~~~i~~~v~~L~~lL~~---~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~  244 (530)
                      ..........+|.++..+..   ..+.+....++.+|--++...+.+-.-.+. .+|..-+.+..+.  +..++..|+-+
T Consensus       194 ~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~  272 (1075)
T KOG2171|consen  194 KSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEF  272 (1075)
T ss_pred             hHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHH
Confidence            33344444678877777654   145566677888888888755544333222 2455556666654  67889999999


Q ss_pred             HHHhhcCCCCCchhh-HHHhhchHHHHHHHhccC--C--------------HHHHHHHHHHHHHhhcCCc-hhHHHHHhc
Q 009647          245 LSNLIKGPDPKPATE-LIKVDGLLDAILRHLKRA--D--------------EELTTEVAWVVVYLSALSN-VATSLLVKS  306 (530)
Q Consensus       245 L~nL~~~~~~~~~~~-~v~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~L~~~~~-~~~~~i~~~  306 (530)
                      +..+++. -|.-++. .-.....++.++.++...  |              +.....|..+|-.++.+=+ ..+    -.
T Consensus       273 ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v----~p  347 (1075)
T KOG2171|consen  273 LVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV----LP  347 (1075)
T ss_pred             HHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe----hH
Confidence            9888876 1221111 001346677777776421  1              0133445556666665311 111    11


Q ss_pred             CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647          307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~  386 (530)
                      -+++.+-.+| .+.+..-+..++.+|+.++.|..+.....++       .+++..+..|.++++.||..||.+++.++..
T Consensus       348 ~~~~~l~~~l-~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-------~Il~~Vl~~l~DphprVr~AA~naigQ~std  419 (1075)
T KOG2171|consen  348 PLFEALEAML-QSTEWKERHAALLALSVIAEGCSDVMIGNLP-------KILPIVLNGLNDPHPRVRYAALNAIGQMSTD  419 (1075)
T ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-------HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence            2334444555 5888889999999999999998877666654       6899999999999999999999999999988


Q ss_pred             CHHHHHHHHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647          387 SVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE  465 (530)
Q Consensus       387 ~~~~~~~li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~  465 (530)
                      -...++.-...-++|.|+..+.+ .++.|+..|+.++-|+...+.   +  ..+..++..+++.    .|.-++.++.+.
T Consensus       420 l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---~--~~l~pYLd~lm~~----~l~~L~~~~~~~  490 (1075)
T KOG2171|consen  420 LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---K--SILEPYLDGLMEK----KLLLLLQSSKPY  490 (1075)
T ss_pred             hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---H--HHHHHHHHHHHHH----HHHHHhcCCchh
Confidence            77777777777788899999966 457999999999999987542   1  1111223333322    455566677888


Q ss_pred             HHHHHHHHHHHHHccCCC
Q 009647          466 AARLGLQFMELVLRGMPN  483 (530)
Q Consensus       466 i~~~~L~~L~~il~~~~~  483 (530)
                      ++..++.+|..+...+++
T Consensus       491 v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  491 VQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999876654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2.6e-10  Score=123.64  Aligned_cols=401  Identities=14%  Similarity=0.112  Sum_probs=253.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  173 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~  173 (530)
                      .-|..++.  ++.|++.+.-|+..+||++++. -+.+..=.++-+-..|+..+.++..+.++..-+.++..++++.-.. 
T Consensus        39 ~~L~~i~~--~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-  114 (1075)
T KOG2171|consen   39 PALAHILA--TSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-  114 (1075)
T ss_pred             HHHHHHHh--cCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence            44444444  5889999999999999998762 2233334455566777777777766777777889999998765433 


Q ss_pred             HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch-hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                       ..=+.++.|++..++ +++..||.|+.+|.++...... .+..+.  .+.+.+.+.+.+++..++..++.++..++...
T Consensus       115 -~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~  190 (1075)
T KOG2171|consen  115 -KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL  190 (1075)
T ss_pred             -chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence             222466777777776 8899999999999998864321 111111  13344555566665559999999998877543


Q ss_pred             C-CCchhhHHHhhchHHHHHHHh----ccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh-cCCCccchh
Q 009647          253 D-PKPATELIKVDGLLDAILRHL----KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLI  326 (530)
Q Consensus       253 ~-~~~~~~~v~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~v~~  326 (530)
                      + .+.....  -...+|.++..+    ..+|.+....++.+|-.++...+....-.+. .++........ +.-+..++.
T Consensus       191 ~~~~~~~~~--~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~  267 (1075)
T KOG2171|consen  191 ENNKSEVDK--FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH  267 (1075)
T ss_pred             ccchHHHHH--HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence            1 1222222  246667666554    4567777788888888887654433322211 12222222111 011233344


Q ss_pred             hhHHHHhhhhcC--------------------------Ccc-------cc------------chhc-----ccC-CCcch
Q 009647          327 PVLRSLGNLVAG--------------------------DSS-------TI------------SDVL-----VPG-HGITD  355 (530)
Q Consensus       327 ~al~~L~nl~~~--------------------------~~~-------~~------------~~~i-----~~g-~~~~~  355 (530)
                      .|+.+|..++..                          .++       ..            ...+     ..| ..+-.
T Consensus       268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p  347 (1075)
T KOG2171|consen  268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP  347 (1075)
T ss_pred             HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence            444333333322                          100       00            0000     001 11123


Q ss_pred             hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 009647          356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK  435 (530)
Q Consensus       356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~  435 (530)
                      -+++.+-.++.+.+..-|+.|+.+|+-++.|+.+++...++. +++.+++.|.++++.||..|+.||+-++.+-      
T Consensus       348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl------  420 (1075)
T KOG2171|consen  348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDL------  420 (1075)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh------
Confidence            355666777889999999999999999999998888776664 8999999999999999999999999998642      


Q ss_pred             chhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHH
Q 009647          436 PKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNM  513 (530)
Q Consensus       436 ~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~  513 (530)
                          ...++.-...-+++.|+..+.+. ++++...+..++-|.+..+........+.  +.++ ++..|..++.+.+++.
T Consensus       421 ----~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~~~~v~e~  494 (1075)
T KOG2171|consen  421 ----QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSSKPYVQEQ  494 (1075)
T ss_pred             ----cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCCchhHHHH
Confidence                12344555567788999999874 56888888888888887765422111111  2233 5666778888888887


Q ss_pred             HHHHH
Q 009647          514 ANGLV  518 (530)
Q Consensus       514 A~~il  518 (530)
                      +..-|
T Consensus       495 vvtaI  499 (1075)
T KOG2171|consen  495 AVTAI  499 (1075)
T ss_pred             HHHHH
Confidence            65443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.40  E-value=2.4e-12  Score=108.97  Aligned_cols=118  Identities=32%  Similarity=0.445  Sum_probs=106.9

Q ss_pred             HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647          302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS  381 (530)
Q Consensus       302 ~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls  381 (530)
                      .+++.|+++.++++|. +++..++..++++|++++...+.....+++      .+++|.+..+|.++++.++..|+|+|+
T Consensus         2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~v~~~a~~~L~   74 (120)
T cd00020           2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVE------AGGLPALVQLLKSEDEEVVKAALWALR   74 (120)
T ss_pred             hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHH------CCChHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3567899999999994 777899999999999999987777777764      479999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          382 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       382 nl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      |++.+.+.....+.+.|+++.|++++.+.+.++++.|+|+|+|++
T Consensus        75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            999988788888889999999999999999999999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.40  E-value=3e-11  Score=131.62  Aligned_cols=325  Identities=19%  Similarity=0.169  Sum_probs=231.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH----------HHhcC------CCChHHHH-H
Q 009647           95 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV----------QCLAF------GSPDEQLL-E  157 (530)
Q Consensus        95 ~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv----------~lL~~------~~~~~~~~-e  157 (530)
                      -+++++..-..++.+.+..|=.+|.+++-.+.+... .-.+..+++.|=          .+|+.      +.+.+-+. .
T Consensus       239 LLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr-~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lca  317 (2195)
T KOG2122|consen  239 LLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR-GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCA  317 (2195)
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHH
Confidence            445555433333456677777888888654433211 011122333222          11221      12223344 5


Q ss_pred             HHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcC-----------CCCHHHHHHHHHHHHhhcCCCchhHHHHH-hcCCh
Q 009647          158 AAWCLTNIAAGKQEETKALL--PALPLLIAHLGE-----------KSSSPVAEQCAWALGNVAGEGEEFRNVLL-SQGAL  223 (530)
Q Consensus       158 A~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~-----------~~~~~v~~~a~~~L~nla~d~~~~r~~~~-~~g~i  223 (530)
                      |..+|..++.+. +++.++-  |++..+-.||.-           ..+..+|..|..+|.||......++..+. ..|.|
T Consensus       318 A~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM  396 (2195)
T KOG2122|consen  318 ALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM  396 (2195)
T ss_pred             HHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence            778888888764 5666554  655554444421           12356899999999999987666665554 56999


Q ss_pred             hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009647          224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSL  302 (530)
Q Consensus       224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~  302 (530)
                      ..++..|.+...++....+..|.||+-.-+. -..+++.+.|-+..|+.. ++...+..+..++.+|+||+....++...
T Consensus       397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~-nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~  475 (2195)
T KOG2122|consen  397 EAVVAQLISAPEELLQVYASVLRNLSWRADS-NMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE  475 (2195)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhccccccc-cHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence            9999999988889999999999999965332 234455556767777654 55666788999999999999877777777


Q ss_pred             HHh-cCchHHHHHHHhc---CCCccchhhhHHHHhhhhc---CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647          303 LVK-SGVLQLLVERLAT---SNSLQLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  375 (530)
Q Consensus       303 i~~-~g~l~~Lv~lL~~---~~~~~v~~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~  375 (530)
                      ++. .|++..||..|..   ++...++..+-.+|.|++.   ..+...|.+.      .++.|..|++.|++..-.|.-+
T Consensus       476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR------~~NCLq~LLQ~LKS~SLTiVSN  549 (2195)
T KOG2122|consen  476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILR------RHNCLQTLLQHLKSHSLTIVSN  549 (2195)
T ss_pred             hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHH------HhhHHHHHHHHhhhcceEEeec
Confidence            776 5899999999952   2345566777777776653   3444445554      4689999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       376 A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      +|.+|+||.+.+++..+.+++.|+++.|.+++.+.+..+..-++.+|.|+...
T Consensus       550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.39  E-value=1.3e-10  Score=131.20  Aligned_cols=277  Identities=16%  Similarity=0.163  Sum_probs=214.3

Q ss_pred             HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          135 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       135 ~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      +.+.++.|+..|.+++ +.+++.|+.+|..+..  +       .++|.|+..|.+ +++.|+..|+.+|+.+....+   
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~--~-------~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP--P-------GFGPALVAALGD-GAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc--h-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccC---
Confidence            3557789999998655 6787889999988752  1       267889999977 789999999999998853211   


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                             ..+.|...|+++++.++..++.+|..+-.+.              .+.++..|.++|+.++..++++|..+..
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~--------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD--------------AALFAAALGDPDHRVRIEAVRALVSVDD  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC--------------HHHHHHHhcCCCHHHHHHHHHHHhcccC
Confidence                   2356778888899999999999998874221              1346678899999999999999987632


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                                    .+.|..++ .++++.++..+..+|+.+....               ...++.|..++.++++.||.
T Consensus       744 --------------~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~---------------~~~~~~L~~ll~D~d~~VR~  793 (897)
T PRK13800        744 --------------VESVAGAA-TDENREVRIAVAKGLATLGAGG---------------APAGDAVRALTGDPDPLVRA  793 (897)
T ss_pred             --------------cHHHHHHh-cCCCHHHHHHHHHHHHHhcccc---------------chhHHHHHHHhcCCCHHHHH
Confidence                          13355566 5788999999999999885432               13578899999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647          375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  454 (530)
Q Consensus       375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  454 (530)
                      .|+.+|+++.... .         +++.++..|.++++.||..|+++|..+...                     ..++.
T Consensus       794 aA~~aLg~~g~~~-~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------------------~a~~~  842 (897)
T PRK13800        794 AALAALAELGCPP-D---------DVAAATAALRASAWQVRQGAARALAGAAAD---------------------VAVPA  842 (897)
T ss_pred             HHHHHHHhcCCcc-h---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------------chHHH
Confidence            9999999984321 1         335688889999999999999999887421                     13488


Q ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 009647          455 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  519 (530)
Q Consensus       455 L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~  519 (530)
                      |..+|.++++.+...+..+|..+ . . +         ....+.|.....+++.+|+..|...|+
T Consensus       843 L~~~L~D~~~~VR~~A~~aL~~~-~-~-~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        843 LVEALTDPHLDVRKAAVLALTRW-P-G-D---------PAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcc-C-C-C---------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            99999999999999999998875 1 1 1         123566778889999999999988876

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.30  E-value=6e-10  Score=119.68  Aligned_cols=368  Identities=16%  Similarity=0.143  Sum_probs=220.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCc
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL  180 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v  180 (530)
                      .+.++++.+|..|+.++.++....++.    +-.. .+|.+..+|...+ +.++..|+.++..+ ..+++....++ ..+
T Consensus       122 ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~  194 (526)
T PF01602_consen  122 LLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYKSLIPKLI  194 (526)
T ss_dssp             HHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence            334889999999999999986653321    2233 7899999996555 67777899999999 22222211222 455


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                      +.|.+++.. +++-++..++.+|..++...+...+.   ..+++.+..++++.++.++-.++.++..+...    .  ..
T Consensus       195 ~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~----~--~~  264 (526)
T PF01602_consen  195 RILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS----P--EL  264 (526)
T ss_dssp             HHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----H--HH
T ss_pred             HHhhhcccc-cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----h--HH
Confidence            666666655 78899999999999999866555422   44567777777777788888888888877632    1  12


Q ss_pred             HHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647          261 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       261 v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  340 (530)
                        ...+++.|.+++.++++.++.-++.+|..++...+..   +.   .....+..+..+++..++..++..|.+++....
T Consensus       265 --~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n  336 (526)
T PF01602_consen  265 --LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---VF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN  336 (526)
T ss_dssp             --HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---HG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred             --HHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---hh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence              3577888888888888888888888888887643111   11   112222233235556666666666666664322


Q ss_pred             cccchhcc--------cC-------------------CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647          341 STISDVLV--------PG-------------------HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL  393 (530)
Q Consensus       341 ~~~~~~i~--------~g-------------------~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~  393 (530)
                      ..  .+++        .+                   .....-.++.++.++......+..++...+.++....++....
T Consensus       337 ~~--~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~  414 (526)
T PF01602_consen  337 VK--EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK  414 (526)
T ss_dssp             HH--HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred             hh--hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH
Confidence            11  0000        00                   0000123444444444444444444444444444332222111


Q ss_pred             HHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHH
Q 009647          394 IHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  472 (530)
Q Consensus       394 li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~  472 (530)
                           ++..|++.+.+ .++.++..++|+++..+.....   .         . .-..++..+.+.....++.++..++.
T Consensus       415 -----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~---~---------~-~~~~~~~~l~~~~~~~~~~vk~~ilt  476 (526)
T PF01602_consen  415 -----ILKKLIELLEDISSPEALAAAIWILGEYGELIEN---T---------E-SAPDILRSLIENFIEESPEVKLQILT  476 (526)
T ss_dssp             -----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT---T---------T-HHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc---c---------c-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence                 36667777754 6678889999999888643210   0         0 01112344555555566778888888


Q ss_pred             HHHHHHccCCCCcchhHHHHhchHHHHHHHhc--CCcHHHHHHHHHHHH
Q 009647          473 FMELVLRGMPNHEGTKLVEREDGIDAMERFQF--HENEDLRNMANGLVD  519 (530)
Q Consensus       473 ~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~--~~~~~i~~~A~~il~  519 (530)
                      ++..+....+......     ...+.+..+..  +.+.+|+++|...+.
T Consensus       477 ~~~Kl~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~  520 (526)
T PF01602_consen  477 ALAKLFKRNPENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR  520 (526)
T ss_dssp             HHHHHHHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            8888876654321111     33456677777  889999999987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.23  E-value=3.5e-09  Score=108.58  Aligned_cols=370  Identities=14%  Similarity=0.093  Sum_probs=223.8

Q ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHcCCCCCcH-HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 009647           93 VEELKSAVAYHGKGA-MQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ  170 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d-~~~~~~a~~~lr~lls~~~~~~~-~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~  170 (530)
                      ...+.++++.+...| ....-..+.++|.+++..+..+. .......+++.+..++.... .....--+.. .+.+++.+
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~-~a~~s~~~  171 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSR-AAHLSSTK  171 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhh-hccccccc
Confidence            456677777777888 66777778999999886643332 33445667777776666222 1122222233 33344444


Q ss_pred             hhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHH---hhcCCCchhHH----HHHhcCChh--hhHhhcCCCChhHHHH
Q 009647          171 EETKALL-PALPLLIAHLGEKSSSPVAEQCAWALG---NVAGEGEEFRN----VLLSQGALP--PLARMMLPNKGSTVRT  240 (530)
Q Consensus       171 ~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~---nla~d~~~~r~----~~~~~g~i~--~L~~lL~~~~~~~~~~  240 (530)
                      ++..... .+++-=+.++....+..+|.+|..+++   ++...++....    .....|+.+  .+.+++++++.+.+..
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            4433333 344444444433356789999999999   88877665443    344556655  5677888898888888


Q ss_pred             HHHHHHHhhcCC---CCCchhhHHHhhc---hHHH-----------------------HHHHhc-------cC-CHHHHH
Q 009647          241 AAWALSNLIKGP---DPKPATELIKVDG---LLDA-----------------------ILRHLK-------RA-DEELTT  283 (530)
Q Consensus       241 a~~~L~nL~~~~---~~~~~~~~v~~~~---~l~~-----------------------L~~lL~-------~~-d~~v~~  283 (530)
                      ++-++.++++..   +|.+........|   .+.+                       +.++..       .. ..++..
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence            999999888753   1221111110111   0000                       000000       00 012233


Q ss_pred             HHHHHHHHhhcCCchhHHHHHhcCchH----------------------HHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647          284 EVAWVVVYLSALSNVATSLLVKSGVLQ----------------------LLVERLATSNSLQLLIPVLRSLGNLVAGDSS  341 (530)
Q Consensus       284 ~a~~~L~~L~~~~~~~~~~i~~~g~l~----------------------~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  341 (530)
                      ..+.+-+.++.+.+.+....+....++                      .+.... .+.+..++..||-++-+++..-+.
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443333322222111111                      111111 234555666777776666533221


Q ss_pred             ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHH
Q 009647          342 TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV  421 (530)
Q Consensus       342 ~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~a  421 (530)
                           ++.| .-...+..+|++++..+...|+..+..+|.|+..........++..|++..+..++.+.++.+++.+.|+
T Consensus       411 -----L~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~  484 (678)
T KOG1293|consen  411 -----LRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV  484 (678)
T ss_pred             -----HHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence                 1111 1134688999999988888999999999999998766778889999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCchhHHHHHHHHHhcCC-hHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-LSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       422 L~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      |.++..+++          +..+......+ -..+..+...+|+.+++.++..|.|+...+
T Consensus       485 Lr~l~f~~d----------e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  485 LRHLMFNCD----------EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHhcch----------HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            999998753          22333332333 344556677899999999999999997543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.21  E-value=1.1e-08  Score=103.76  Aligned_cols=331  Identities=15%  Similarity=0.130  Sum_probs=225.3

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-----CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      .+..|+.+|+..+++++....+..+.-+..+.+..-..+.+.     ....+++.+|..++.-+...++..|+.|.... 
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-  132 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG-  132 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-
Confidence            566788888877788999999999999988776655555553     56778888999889999999999999987542 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHH
Q 009647          254 PKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRS  331 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~  331 (530)
                      +....... ..-.++.+...+.+. +...+.-++.+|..|.. .++....+.+.++++.|+++|.... +.+++-.++-|
T Consensus       133 ~~~~~~~~-l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         133 LAKMEGSD-LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             ccccchhH-HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            21111111 122445566666654 45677777889999987 5566777788889999999996433 45677788888


Q ss_pred             HhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCC------HHHHHHHHhCCcHHHHH
Q 009647          332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGS------VEHKQLIHSSEALALLL  404 (530)
Q Consensus       332 L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~------~~~~~~li~~~~l~~Li  404 (530)
                      +--++...+ ......      ..++++.|+.+++.. ...|.+-++.++.|+...+      ......+++.|+++.+-
T Consensus       211 lWlLSF~~~-~~~~~~------~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~  283 (429)
T cd00256         211 IWLLTFNPH-AAEVLK------RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ  283 (429)
T ss_pred             HHHHhccHH-HHHhhc------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence            887776554 222222      357999999999754 5689999999999998743      22345567777665554


Q ss_pred             HHhc--CCChhHHHHHHHHH-------HHhcC---------------CCCCCCCCchhHHHHHHHHHhc--CChHHHHhh
Q 009647          405 HLLS--TSPFDIKKEVAYVL-------GNLCV---------------SPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDL  458 (530)
Q Consensus       405 ~lL~--~~~~~v~~eA~~aL-------~nl~~---------------~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~l  458 (530)
                      .+..  -+|+++....-..-       ..++.               .+.  ..++.=-.++...+-+.  .++..|+++
T Consensus       284 ~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~--H~se~FW~EN~~kf~~~~~~llk~L~~i  361 (429)
T cd00256         284 SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV--HKSEKFWRENADRLNEKNYELLKILIHL  361 (429)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC--CCCchHHHHHHHHHHhcchHHHHHHHHH
Confidence            4442  35665543222211       11111               100  00000001334444433  357889999


Q ss_pred             hc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          459 VR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       459 L~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      |. +.|+.++.+|+.=|..+.+..|.  ++..+++.||=+.+-+|..|+|++|+..|..-++++..
T Consensus       362 L~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         362 LETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            95 56788887877777777777654  57788999999999999999999999999888887653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=4.3e-10  Score=114.79  Aligned_cols=308  Identities=15%  Similarity=0.178  Sum_probs=199.1

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc------CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647          137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  210 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~------~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~  210 (530)
                      .++|.|+++|.+++.. .+--|..+|..|+.++.+..+.-+      -.+|.|+++.++ +++.+|..|+.|+..+....
T Consensus       128 elLp~L~~~L~s~d~n-~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYN-TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCccc-ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecC
Confidence            4789999999977633 223399999999987765544322      279999999998 79999999999999887644


Q ss_pred             chhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHH
Q 009647          211 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV  290 (530)
Q Consensus       211 ~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  290 (530)
                      .+.-..-++ ..+..+..+-.+++++++.+.+.+|..|..-...+..+   ...+++.++++...+.|++|..+||....
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p---hl~~IveyML~~tqd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP---HLDNIVEYMLQRTQDVDENVALEACEFWL  281 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc---chHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence            332222222 24666667777889999999999999998643111111   13578888888888999999999999999


Q ss_pred             HhhcCCchhHHHHHh---cCchHHHHHHHhcCCC----------------------------------------------
Q 009647          291 YLSALSNVATSLLVK---SGVLQLLVERLATSNS----------------------------------------------  321 (530)
Q Consensus       291 ~L~~~~~~~~~~i~~---~g~l~~Lv~lL~~~~~----------------------------------------------  321 (530)
                      .+++.+  ....++.   ..++|.|++-+..+..                                              
T Consensus       282 a~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe  359 (885)
T KOG2023|consen  282 ALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE  359 (885)
T ss_pred             HHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence            999754  2222222   2344444432211100                                              


Q ss_pred             ---------ccchh---hhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH
Q 009647          322 ---------LQLLI---PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE  389 (530)
Q Consensus       322 ---------~~v~~---~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~  389 (530)
                               ..++.   .|+..|+|+..      +.++       .-++|.|-..|.+....+|+.+..+++.|+.|.-.
T Consensus       360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~------~elL-------~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~  426 (885)
T KOG2023|consen  360 DDDDDAFSDWNLRKCSAAALDVLANVFG------DELL-------PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ  426 (885)
T ss_pred             cccccccccccHhhccHHHHHHHHHhhH------HHHH-------HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence                     01111   12222222211      1111       23556666666788889999999999999987533


Q ss_pred             HHHHHHhC--CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647          390 HKQLIHSS--EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  467 (530)
Q Consensus       390 ~~~~li~~--~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~  467 (530)
                      .   ++.+  .++|.|+.+|.+..+-||+.+||+|+..+.--..  ..+   +++..     .++..|+..+-.++.+++
T Consensus       427 g---~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~--~~~---~~~f~-----pvL~~ll~~llD~NK~VQ  493 (885)
T KOG2023|consen  427 G---FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ--DSR---DEYFK-----PVLEGLLRRLLDSNKKVQ  493 (885)
T ss_pred             h---cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc--CCh---HhhhH-----HHHHHHHHHHhcccHHHH
Confidence            2   3322  3789999999999999999999999988642100  000   12222     134445555555777888


Q ss_pred             HHHHHHHHHHH
Q 009647          468 RLGLQFMELVL  478 (530)
Q Consensus       468 ~~~L~~L~~il  478 (530)
                      +.+..++..+-
T Consensus       494 EAAcsAfAtle  504 (885)
T KOG2023|consen  494 EAACSAFATLE  504 (885)
T ss_pred             HHHHHHHHHHH
Confidence            87777665543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.16  E-value=2.6e-08  Score=100.96  Aligned_cols=323  Identities=14%  Similarity=0.120  Sum_probs=215.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH-----cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-----AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG  168 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~-----~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~  168 (530)
                      .-+..++..  ....+.....+.-+-.+++..+ .....+.+     ......++.+|..++ .-++..|+.+|+.+.+.
T Consensus        56 ~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          56 KTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHhc--cCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            344445542  3445556666666677765432 22233333     246777888888655 34556699999999865


Q ss_pred             ChhhHHh-hc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHH
Q 009647          169 KQEETKA-LL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWA  244 (530)
Q Consensus       169 ~~~~~~~-i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~  244 (530)
                      ....... .. -.++.+...|.++.+...+..|+.+|..+.. .+++|..+.+.+++++|+.+|+..  ...++..++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            4422111 11 1334555666654457788899999999998 679999999999999999999853  56788889999


Q ss_pred             HHHhhcCCCCCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCC------chhHHHHHhcCchHHHHHHHh
Q 009647          245 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALS------NVATSLLVKSGVLQLLVERLA  317 (530)
Q Consensus       245 L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~------~~~~~~i~~~g~l~~Lv~lL~  317 (530)
                      ++-|+....   ..+.....+.+|.++.++... .+.+..-++.+|.|+...+      ......+++.|+.+.+-.+..
T Consensus       211 lWlLSF~~~---~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~  287 (429)
T cd00256         211 IWLLTFNPH---AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ  287 (429)
T ss_pred             HHHHhccHH---HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence            998886532   233334578999999999854 5678888999999999732      123456677776654444332


Q ss_pred             c-CCCccchhhhHHHHhhhhcCC-------ccccchhcccCCC---------------------cchhhHHHHHHHhc-c
Q 009647          318 T-SNSLQLLIPVLRSLGNLVAGD-------SSTISDVLVPGHG---------------------ITDQVIAVLVKCLK-S  367 (530)
Q Consensus       318 ~-~~~~~v~~~al~~L~nl~~~~-------~~~~~~~i~~g~~---------------------~~~~~l~~L~~lL~-~  367 (530)
                      + -.|+++ ...+..|.......       +..... +.+|+.                     -+..++..|+.+|. +
T Consensus       288 rk~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~E-l~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s  365 (429)
T cd00256         288 RKYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSE-LRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS  365 (429)
T ss_pred             CCCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHH-HhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence            1 134443 23333333332111       000000 112210                     12457889999994 5


Q ss_pred             CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          368 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       368 ~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .++.+..-||.=|+.++...|.....+-+.|+=..++.++.+++++|+++|+.|+.-+.
T Consensus       366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            67888899999999999998888887778899888999999999999999999987764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=5.7e-09  Score=108.46  Aligned_cols=357  Identities=16%  Similarity=0.195  Sum_probs=225.9

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCC-------------CCcH--HHHHH--cCCHHHHHHHhcCCC-----ChH-HHHH
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFE-------------FPPI--ETALK--AGAIPVLVQCLAFGS-----PDE-QLLE  157 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~-------------~~~~--~~ii~--~g~v~~Lv~lL~~~~-----~~~-~~~e  157 (530)
                      ..++|++.++.++|+.-+......+-             -||.  ....+  .+++|.|+++|...+     ++. .-+.
T Consensus       266 ~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA  345 (859)
T KOG1241|consen  266 AAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA  345 (859)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence            35579999999999988875533211             1221  11111  478899999997521     111 2244


Q ss_pred             HHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647          158 AAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS  236 (530)
Q Consensus       158 A~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~  236 (530)
                      |.-||.-++.   -..+.+++ .+|.+-+.+++ ++..-++.|+.++|.+-.+....+..-+..+++|.++.++.++..-
T Consensus       346 Ag~CL~l~A~---~~~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~  421 (859)
T KOG1241|consen  346 AGVCLMLFAQ---CVGDDIVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW  421 (859)
T ss_pred             HHHHHHHHHH---HhcccchhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence            6667766662   12233443 34444447776 8899999999999999987777777778889999999999988888


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHH----HhcCchHHH
Q 009647          237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL----VKSGVLQLL  312 (530)
Q Consensus       237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i----~~~g~l~~L  312 (530)
                      +++.+.|+|..++.+- |......+...+.++.++.-|. +.|.+..++||++.+|++.-.+....-    ......+.+
T Consensus       422 VkdTaAwtlgrI~d~l-~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i  499 (859)
T KOG1241|consen  422 VKDTAAWTLGRIADFL-PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI  499 (859)
T ss_pred             hcchHHHHHHHHHhhc-hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence            8999999999999764 3322222223455555555553 457899999999999995311110000    000123333


Q ss_pred             HHHHhc------CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH----HHH-----HhccCc----HhHH
Q 009647          313 VERLAT------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV----LVK-----CLKSEH----RVLK  373 (530)
Q Consensus       313 v~lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~----L~~-----lL~~~~----~~i~  373 (530)
                      +.-|..      .+....+..|-.+|+.++...+...-.++.       ++...    |-+     .++..+    ..++
T Consensus       500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-------~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ  572 (859)
T KOG1241|consen  500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-------KLTLVILEKLDQTISSQILSLADRAQLNELQ  572 (859)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-------HHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence            333321      134568899999999999877654332221       23332    222     333332    3677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                      -.-|.+|..+.+.....+..+.+. ++..+++++++ .+.-+..+|..+++.++..-    |     ....+++  ..+.
T Consensus       573 s~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s~~s~~v~e~a~laV~tl~~~L----g-----~~F~kym--~~f~  640 (859)
T KOG1241|consen  573 SLLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFESKRSAVVHEEAFLAVSTLAESL----G-----KGFAKYM--PAFK  640 (859)
T ss_pred             HHHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcCCccccchHHHHHHHHHHHHHH----h-----HhHHHHH--HHHH
Confidence            888888888877544444444443 67788899987 45568889999998887642    1     1222333  2355


Q ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCC
Q 009647          453 SGFIDLV-RSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       453 ~~L~~lL-~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      |.|..-| +..+..+...+...+..+++..+
T Consensus       641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~  671 (859)
T KOG1241|consen  641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALE  671 (859)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            6666667 45677888888888888876554

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=3.7e-09  Score=110.75  Aligned_cols=257  Identities=18%  Similarity=0.151  Sum_probs=201.2

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      +..|++=|+...++..|.+|+.-|+.+-+...+.+...+   -.||.|+.+|+...+.++.-+|++||.++|.-.|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            455556666554577888877766665544333333344   38999999999877899999999999999998889999


Q ss_pred             HHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          216 VLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       216 ~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      .+++.++||.|+. |+.-...++.++++-+|-.|++.+ |+    .+...|++...+..|.--...++..|+.+..|+|.
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~----AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PK----AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cH----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999996 555678999999999999999875 33    33468999999988877677889999999999997


Q ss_pred             C-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC---ccccchhcccCCCcchhhHHHHHHHhccCcH
Q 009647          295 L-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD---SSTISDVLVPGHGITDQVIAVLVKCLKSEHR  370 (530)
Q Consensus       295 ~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~---~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~  370 (530)
                      . .++....+.+  ++|.|..+|. +.+.+....++-|+..++.+-   ++..+.+.      ..+.+....+||.-.+.
T Consensus       324 si~sd~f~~v~e--alPlL~~lLs-~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~------s~dLi~~~~qLlsvt~t  394 (1051)
T KOG0168|consen  324 SIRSDEFHFVME--ALPLLTPLLS-YQDKKPIESVCICLTRIADGFQHGPDKLDQLC------SHDLITNIQQLLSVTPT  394 (1051)
T ss_pred             cCCCccchHHHH--HHHHHHHHHh-hccchhHHHHHHHHHHHHHhcccChHHHHHHh------chhHHHHHHHHHhcCcc
Confidence            4 4455566654  5999999994 777788899999999998653   33445554      35799999999876532


Q ss_pred             ----hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647          371 ----VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       371 ----~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~  409 (530)
                          .+....+..++-++.+++.....+...++...|..+|..
T Consensus       395 ~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  395 ILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             cccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence                556777888999999988888888899999999988854

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.1e-08  Score=104.80  Aligned_cols=398  Identities=14%  Similarity=0.140  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCC--CCcHHHHHHc--CC--HHHHHHHhcCC--------CChHHH-H
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFE--FPPIETALKA--GA--IPVLVQCLAFG--------SPDEQL-L  156 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~--~~~~~~ii~~--g~--v~~Lv~lL~~~--------~~~~~~-~  156 (530)
                      .+.++.++++.-.|+|++.+..+...+.++-...+  +.-+...++.  .-  ...+..+|-..        -.++.+ +
T Consensus        11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y   90 (885)
T KOG2023|consen   11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY   90 (885)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence            45677788877778999998888888777633221  1111011111  11  11222222110        011121 2


Q ss_pred             HHHHHHHHHhcCChhhHHhhcC-----------------CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647          157 EAAWCLTNIAAGKQEETKALLP-----------------ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  219 (530)
Q Consensus       157 eA~~~L~nia~~~~~~~~~i~~-----------------~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  219 (530)
                      --..||.++...++ .....+|                 .+|.|.++|.+ ++...+|-|..+|..||.|+++.-+.-..
T Consensus        91 iKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   91 IKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            23455555553333 2222221                 68899999987 77789999999999999998876554222


Q ss_pred             c----CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647          220 Q----GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  295 (530)
Q Consensus       220 ~----g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  295 (530)
                      .    -.+|.++.+.+++++.++..|+.|+-.+.-.. +..  -.+....++..+..+-.+++++|+.+.|.+|.+|.+-
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence            2    25788889999999999999999998776432 222  1333568889999988899999999999999999985


Q ss_pred             CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc--cchhcccCCCcchhhHHHHHHHhccCc----
Q 009647          296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEH----  369 (530)
Q Consensus       296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~--~~~~i~~g~~~~~~~l~~L~~lL~~~~----  369 (530)
                      .++...-- -.++++.++... ...+++|...||...-.++......  .+..+       ..++|.|++=+..++    
T Consensus       246 r~dkl~ph-l~~IveyML~~t-qd~dE~VALEACEFwla~aeqpi~~~~L~p~l-------~kliPvLl~~M~Ysd~D~~  316 (885)
T KOG2023|consen  246 RPDKLVPH-LDNIVEYMLQRT-QDVDENVALEACEFWLALAEQPICKEVLQPYL-------DKLIPVLLSGMVYSDDDII  316 (885)
T ss_pred             cHHhcccc-hHHHHHHHHHHc-cCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-------HHHHHHHHccCccccccHH
Confidence            54433211 135666666655 4567778889999888888665211  11122       245555544221110    


Q ss_pred             ----------------------------------------------------HhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647          370 ----------------------------------------------------RVLKKEAAWVLSNIAAGSVEHKQLIHSS  397 (530)
Q Consensus       370 ----------------------------------------------------~~i~~~A~~~Lsnl~~~~~~~~~~li~~  397 (530)
                                                                          ..+|+.++.+|--++.--.   +.++..
T Consensus       317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~~  393 (885)
T KOG2023|consen  317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLPI  393 (885)
T ss_pred             HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHHH
Confidence                                                                2344444433333322111   112221


Q ss_pred             CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc--CChHHHHhhhccCCHHHHHHHHHHHH
Q 009647          398 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFME  475 (530)
Q Consensus       398 ~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~i~~~~L~~L~  475 (530)
                       ++|.|-..|.+.+..+|+.++.|++.++.++-             +.++..  .+||.|+.+|.++.+-++..+.+.|.
T Consensus       394 -l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------------~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs  459 (885)
T KOG2023|consen  394 -LLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------------QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS  459 (885)
T ss_pred             -HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------------hhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence             45666666778888999999999999987541             222222  36899999999999988888888887


Q ss_pred             HHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          476 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       476 ~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      ..-...-.....+.+..  .+.-|.+-.-+.|+.|++.|+....++-
T Consensus       460 Rys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  460 RYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             hhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            65322111111122211  1222222345789999999988777653

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.02  E-value=8.7e-11  Score=94.46  Aligned_cols=84  Identities=20%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             HHhhh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHh
Q 009647           25 VIWFL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAY  102 (530)
Q Consensus        25 ~~~~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  102 (530)
                      .||+. +|++..|||| ++.|+|||+||||+|.|||+...  ...+..+.... . +.     ..........++.++.+
T Consensus        12 ~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~--~~~~~~~~~~~-~-~~-----~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen   12 SYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINM--ADEESSSEESE-S-DQ-----NSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             GSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT--------------------------TCCCCS--HHHHHHHHH
T ss_pred             HHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--Ccccccccccc-c-cc-----cccccccccccHHHHHh
Confidence            79944 7998888888 79999999999999999997421  11111000000 0 00     00011123566666777


Q ss_pred             cCCCCHHHHHHHHHH
Q 009647          103 HGKGAMQKRVNALRE  117 (530)
Q Consensus       103 l~s~d~~~~~~a~~~  117 (530)
                      ++|+|+..++.|++.
T Consensus        83 v~S~d~~~ql~Atq~   97 (97)
T PF01749_consen   83 VNSDDPEVQLEATQQ   97 (97)
T ss_dssp             HTSSCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhCC
Confidence            789999999999863

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.02  E-value=1.5e-08  Score=100.98  Aligned_cols=232  Identities=17%  Similarity=0.198  Sum_probs=167.0

Q ss_pred             HHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHHHHHh------cCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          267 LDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVK------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       267 l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      ...++.+|+  .++++++..++..+..+...++...+.+..      ......+++++ .+++..+...|++.|+.+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            334445554  367899999999999999877777766654      23677888877 577888999999999999988


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhcc----CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh------c
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKS----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------S  408 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL------~  408 (530)
                      .+.......       .+.++.++.++.+    .+..++..|+.+++++.. .++.+..+.+.++++.+..++      .
T Consensus       136 ~~~~~~~~~-------~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~  207 (312)
T PF03224_consen  136 GPKRSEKLV-------KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNS  207 (312)
T ss_dssp             TTT--HHHH-------HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH------
T ss_pred             CCccccchH-------HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccC
Confidence            766544321       1467777777654    455778999999999975 568888899999999999999      2


Q ss_pred             -CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcc
Q 009647          409 -TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG  486 (530)
Q Consensus       409 -~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~  486 (530)
                       ..+..++.+++.+++-++..           .+.+..+.+.++++.|+++++. ...++++.++.+|.|++...+.. .
T Consensus       208 ~~~~~Ql~Y~~ll~lWlLSF~-----------~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-~  275 (312)
T PF03224_consen  208 NSSGIQLQYQALLCLWLLSFE-----------PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-N  275 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHTTS-----------HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-H
T ss_pred             CCCchhHHHHHHHHHHHHhcC-----------HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-H
Confidence             23467889999999999875           3567889999999999999986 56889999999999999765542 5


Q ss_pred             hhHHHHhchHHHHHHHhcC--CcHHHHHHHHHHHH
Q 009647          487 TKLVEREDGIDAMERFQFH--ENEDLRNMANGLVD  519 (530)
Q Consensus       487 ~~~i~~~ggl~~L~~L~~~--~~~~i~~~A~~il~  519 (530)
                      ...+-.+|++..++.|+..  .++|+++--..+-+
T Consensus       276 ~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  276 IELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             HHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            5667789999999999765  48888876555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2e-08  Score=105.25  Aligned_cols=337  Identities=18%  Similarity=0.223  Sum_probs=205.8

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI  184 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~  184 (530)
                      +.-...+..|++.+...+..+.+-       +++.|-++.+....+ -+++.-.-..+.|.+.+.++..   .++++.++
T Consensus        24 s~~~~kr~~a~kkvIa~Mt~G~Dv-------SslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~a---~~avnt~~   92 (734)
T KOG1061|consen   24 SQSKEKRKDAVKKVIAYMTVGKDV-------SSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDLA---ILAVNTFL   92 (734)
T ss_pred             hhhhhhHHHHHHHHHhcCccCcch-------HhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchHH---Hhhhhhhh
Confidence            333467788887666555555322       568899999998776 5666668889999998877543   34777887


Q ss_pred             HhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 009647          185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVD  264 (530)
Q Consensus       185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~  264 (530)
                      +=..+ +++.+|.-|+..++.+-.+.       +..-+..||.+.+++.++.+++.++-+..++-..+     .+.+...
T Consensus        93 kD~~d-~np~iR~lAlrtm~~l~v~~-------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-----~~~~~~~  159 (734)
T KOG1061|consen   93 KDCED-PNPLIRALALRTMGCLRVDK-------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-----PDLVEDS  159 (734)
T ss_pred             ccCCC-CCHHHHHHHhhceeeEeehH-------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-----hhhcccc
Confidence            77766 78999999999999876532       22335789999999999999999999999997543     2345578


Q ss_pred             chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647          265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS  344 (530)
Q Consensus       265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~  344 (530)
                      |+++.|-.++.++++.|..+|+.+|..+...+++.....+....+..++..+. .-++.-+...+.++.+....++...+
T Consensus       160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~-ec~EW~qi~IL~~l~~y~p~d~~ea~  238 (734)
T KOG1061|consen  160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN-ECTEWGQIFILDCLAEYVPKDSREAE  238 (734)
T ss_pred             chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH-HhhhhhHHHHHHHHHhcCCCCchhHH
Confidence            99999999999999999999999999999755421111111112222222221 11222223333333333222221111


Q ss_pred             hhccc-------C-CCc----------------------chhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH---
Q 009647          345 DVLVP-------G-HGI----------------------TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK---  391 (530)
Q Consensus       345 ~~i~~-------g-~~~----------------------~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~---  391 (530)
                      .+++.       . ..+                      -...-++|+.++.+.. .++..|..-+.-+....++..   
T Consensus       239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~  317 (734)
T KOG1061|consen  239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE  317 (734)
T ss_pred             HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence            00000       0 000                      0112223333333332 333333333332222222211   


Q ss_pred             -------------------HHHH----hCC---cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 009647          392 -------------------QLIH----SSE---ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS  445 (530)
Q Consensus       392 -------------------~~li----~~~---~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~  445 (530)
                                         +.+.    +++   ++.-|...-..-|.+.-++|++||++++...           ++   
T Consensus       318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----------e~---  383 (734)
T KOG1061|consen  318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----------EQ---  383 (734)
T ss_pred             hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----------hh---
Confidence                               1110    111   2333334445567788899999999998632           11   


Q ss_pred             HHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647          446 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       446 l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~  483 (530)
                        ..++++.|+++++.+-..++..+...+..+++.+++
T Consensus       384 --~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~  419 (734)
T KOG1061|consen  384 --SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN  419 (734)
T ss_pred             --hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence              178999999999988778888888889999998876

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=5.8e-07  Score=89.22  Aligned_cols=352  Identities=14%  Similarity=0.126  Sum_probs=230.7

Q ss_pred             HHHHHHH-HhcCCCCHHHHHHHHHHHHHHHcC-CCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           94 EELKSAV-AYHGKGAMQKRVNALRELRRLLSR-FEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        94 ~~l~~~l-~~l~s~d~~~~~~a~~~lr~lls~-~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      ..++.++ +.+..++.+.......-|.++ |. .++.  ..+.+.|+|.+|+.++...+ +++.......+.|++.++.-
T Consensus       303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf~eNK--~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~gl  378 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNSSLLTLVIKFLKKL-SIFDENK--IVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGL  378 (791)
T ss_pred             HhHHHHHHHHHcccchHHHHHHHHHHHHh-hhhccch--HHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccc
Confidence            3444433 445566766666666666666 54 4333  56888999999999999877 55656688999999987764


Q ss_pred             hHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhh
Q 009647          172 ETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLI  249 (530)
Q Consensus       172 ~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~  249 (530)
                      ..+.+. |.+|.+..+|.+..   -..-|+..|..++.| ...+..+.....|+.+++.+- ..+.++-.......-|||
T Consensus       379 r~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~  454 (791)
T KOG1222|consen  379 RPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC  454 (791)
T ss_pred             cHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence            445554 78999999997633   234577778888875 577777878888999987554 445555444554556888


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          250 KGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       250 ~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      -.+.+   ..++.+..++..|... +...|+-+    ...+.+++.........+++  .+..|...+...++++....+
T Consensus       455 lnkRN---aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EC  525 (791)
T KOG1222|consen  455 LNKRN---AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLEC  525 (791)
T ss_pred             hcccc---ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHH
Confidence            65422   2244455667766643 44444322    23456777644333333433  356666666555667777899


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  406 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l  406 (530)
                      +.+++|+.-.+-+..+.+ +     ..+.+|.+...|..+  ...+.-+...+++.++.. ......+..+++++.|+++
T Consensus       526 lGtlanL~v~dldw~~il-q-----~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieL  598 (791)
T KOG1222|consen  526 LGTLANLKVTDLDWAKIL-Q-----SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIEL  598 (791)
T ss_pred             HHHHhhcccCCCCHHHHH-h-----hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHH
Confidence            999999986655544433 3     357899999988765  235667777777776543 2333334467999999999


Q ss_pred             hcC--CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc-CChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          407 LST--SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR-GCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       407 L~~--~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~-g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      |+.  .+.+.....+++...+..+.           ...+.+++. ..-..|+++....+.++..+|=.+|.-|...
T Consensus       599 L~a~QeDDEfV~QiiyVF~Q~l~He-----------~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  599 LQACQEDDEFVVQIIYVFLQFLKHE-----------LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHhhcccchHHHHHHHHHHHHHHHH-----------HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            964  23445555667776666531           234566654 4445699999999998888777777666543

>PTZ00429 beta-adaptin; Provisional

Probab=98.97  E-value=1.2e-06  Score=95.51  Aligned_cols=359  Identities=16%  Similarity=0.086  Sum_probs=207.9

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  181 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~  181 (530)
                      .+.+.++.++..|+-++.++....  |  +.+.+.|.++.|.++|...+ +.++..|+.+|..+....+.......+.+.
T Consensus       148 ~L~D~~pYVRKtAalai~Kly~~~--p--elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~  222 (746)
T PTZ00429        148 AVADPDPYVRKTAAMGLGKLFHDD--M--QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYGSEKIESSNEWVN  222 (746)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhhC--c--ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            556788889998888888875433  3  22446788899999887544 567778889999997655433323235666


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  261 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v  261 (530)
                      .|+..|.. -++..+-..+.+|......+..   .  ...++..+...|++.++.++-.|+.++.++....++.. ...+
T Consensus       223 ~Ll~~L~e-~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~-~~~~  295 (746)
T PTZ00429        223 RLVYHLPE-CNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL-IERC  295 (746)
T ss_pred             HHHHHhhc-CChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH-HHHH
Confidence            67777765 4566666777777654322211   1  12456777888888899999999999998874321111 1111


Q ss_pred             HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHH-------------------------HHhc----CchHHH
Q 009647          262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL-------------------------LVKS----GVLQLL  312 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~-------------------------i~~~----g~l~~L  312 (530)
                       ...+-+.++.++ +.+++++.-++..+..+....+.....                         +.+.    .++..|
T Consensus       296 -~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL  373 (746)
T PTZ00429        296 -TVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKEL  373 (746)
T ss_pred             -HHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence             112334555553 455666666665555554332211100                         0001    122333


Q ss_pred             HHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHH
Q 009647          313 VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ  392 (530)
Q Consensus       313 v~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~  392 (530)
                      .++. ...+.++...+++++|+++..-+...           ...+..|+.++..... +..+++-++.+|....+... 
T Consensus       374 ~eYa-~d~D~ef~r~aIrAIg~lA~k~~~~a-----------~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~-  439 (746)
T PTZ00429        374 AEYA-SGVDMVFVVEVVRAIASLAIKVDSVA-----------PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL-  439 (746)
T ss_pred             HHHh-hcCCHHHHHHHHHHHHHHHHhChHHH-----------HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH-
Confidence            3333 24566777788888888875433221           2466777777765433 45567778888866554321 


Q ss_pred             HHHhCCcHHHHHHHh---cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHH
Q 009647          393 LIHSSEALALLLHLL---STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL  469 (530)
Q Consensus       393 ~li~~~~l~~Li~lL---~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~  469 (530)
                            +++.|+..+   .-.+++.+...+|.|+..+..-           +...     .++..+++-+...++.++..
T Consensus       440 ------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-----------~~a~-----~~L~~~i~~f~~E~~~Vqlq  497 (746)
T PTZ00429        440 ------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-----------ENGK-----DIIQRFIDTIMEHEQRVQLA  497 (746)
T ss_pred             ------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-----------hhHH-----HHHHHHHhhhccCCHHHHHH
Confidence                  344454433   2345677777799998886421           1111     12333344334466778878


Q ss_pred             HHHHHHHHHccCCCCcchhHHHHhchHHHHHHH-hcCCcHHHHHHHHH
Q 009647          470 GLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANG  516 (530)
Q Consensus       470 ~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L-~~~~~~~i~~~A~~  516 (530)
                      .|.+...++-..+. .....+     ...|..+ .+..|++|+.+|.-
T Consensus       498 lLta~vKlfl~~p~-~~~~~l-----~~vL~~~t~~~~d~DVRDRA~~  539 (746)
T PTZ00429        498 ILSAAVKMFLRDPQ-GMEPQL-----NRVLETVTTHSDDPDVRDRAFA  539 (746)
T ss_pred             HHHHHHHHHhcCcH-HHHHHH-----HHHHHHHHhcCCChhHHHHHHH
Confidence            88888877755432 111111     2234444 34678899999964

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.8e-06  Score=90.48  Aligned_cols=324  Identities=16%  Similarity=0.229  Sum_probs=236.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 009647           91 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        91 ~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~  169 (530)
                      ++++.|+..+.  ++.-.+.+..|+..|..+ ++.    ...-+.+-++++|++.|+.+ .++++...|..++.++.+.+
T Consensus        22 ETI~kLcDRve--ssTL~eDRR~A~rgLKa~-srk----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   22 ETIEKLCDRVE--SSTLLEDRRDAVRGLKAF-SRK----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             hHHHHHHHHHh--hccchhhHHHHHHHHHHH-HHH----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            46788888887  577789999999999887 332    24456677899999999854 34566567888888887655


Q ss_pred             h------hh----------HHhhc---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHHhc-CChhhhHh
Q 009647          170 Q------EE----------TKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQ-GALPPLAR  228 (530)
Q Consensus       170 ~------~~----------~~~i~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~-g~i~~L~~  228 (530)
                      .      +.          ++.++   +.|..++.++.. .+-.||..++-.|.++... ..+.++.++.. -+|..|+.
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence            2      11          11222   478888888877 7889999999999998764 45788888876 58999999


Q ss_pred             hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCC---H-HHHHHHHHHHHHhhcCCchhHHHHH
Q 009647          229 MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD---E-ELTTEVAWVVVYLSALSNVATSLLV  304 (530)
Q Consensus       229 lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d---~-~v~~~a~~~L~~L~~~~~~~~~~i~  304 (530)
                      +|.+....++..++..|+.|.++. +.. ..+|.-..+...|+.++..+.   . -|..+|+..|.||..++..+...+.
T Consensus       174 lL~DsrE~IRNe~iLlL~eL~k~n-~~I-QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr  251 (970)
T KOG0946|consen  174 LLRDSREPIRNEAILLLSELVKDN-SSI-QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR  251 (970)
T ss_pred             HHhhhhhhhchhHHHHHHHHHccC-chH-HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence            999998899999999999999874 333 345556788899999998542   2 4788999999999998888888999


Q ss_pred             hcCchHHHHHHHhc--CCCccc----------hhhhHHHHhhhhcCCcc-----ccchhcccCCCcchhhHHHHHHHhcc
Q 009647          305 KSGVLQLLVERLAT--SNSLQL----------LIPVLRSLGNLVAGDSS-----TISDVLVPGHGITDQVIAVLVKCLKS  367 (530)
Q Consensus       305 ~~g~l~~Lv~lL~~--~~~~~v----------~~~al~~L~nl~~~~~~-----~~~~~i~~g~~~~~~~l~~L~~lL~~  367 (530)
                      +.+.+|+|..+|..  ..+.++          ...++.++.-++.....     +.|.++.     ..+++..|..++.|
T Consensus       252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~-----ss~ll~~Lc~il~~  326 (970)
T KOG0946|consen  252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALV-----SSHLLDVLCTILMH  326 (970)
T ss_pred             ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-----HcchHHHHHHHHcC
Confidence            99999999988741  122111          23567777777654322     2234554     35799999999988


Q ss_pred             C--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCc--H----HHH---HHHh--cCCChhHHHHHHHHHHHhcCCC
Q 009647          368 E--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA--L----ALL---LHLL--STSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       368 ~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~--l----~~L---i~lL--~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      +  ..+|+.++..++++..+|+...-..+.+..+  .    |.+   ...+  ....+..|..+.+++..+....
T Consensus       327 ~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  327 PGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             CCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            7  3589999999999999998655555543211  1    222   2222  4466889999999998777643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.81  E-value=7.2e-08  Score=96.01  Aligned_cols=229  Identities=18%  Similarity=0.200  Sum_probs=156.5

Q ss_pred             CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHh------cCChhhhHhhcCCCChhHHHHHHHHHHHhhcC
Q 009647          179 ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS------QGALPPLARMMLPNKGSTVRTAAWALSNLIKG  251 (530)
Q Consensus       179 ~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~------~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~  251 (530)
                      .+..++.+|+.. +++++....+-.+..+..+++...+.+..      .....++++++.++|..+...++..|+.|...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            455555666554 68999999999999999988877776665      23688899999999999999999999999866


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHH------hcCCC
Q 009647          252 PDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL------ATSNS  321 (530)
Q Consensus       252 ~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL------~~~~~  321 (530)
                      .+... ...  ..+.++.++..+.+    ++.+++.-++.+|.+|.. .+++...+.+.|+++.+..+|      ....+
T Consensus       136 ~~~~~-~~~--~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~  211 (312)
T PF03224_consen  136 GPKRS-EKL--VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSG  211 (312)
T ss_dssp             TTT---HHH--HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred             CCccc-cch--HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence            43222 211  24667777776653    456778999999999997 677888888999999999998      33345


Q ss_pred             ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHH-HHHHHHhCCc
Q 009647          322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEA  399 (530)
Q Consensus       322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~-~~~~li~~~~  399 (530)
                      .+++-.++.|+--++... .....+..      .++++.|+.+++. .+..|.+-++.++.|+....+. .+..++..|+
T Consensus       212 ~Ql~Y~~ll~lWlLSF~~-~~~~~~~~------~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~  284 (312)
T PF03224_consen  212 IQLQYQALLCLWLLSFEP-EIAEELNK------KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL  284 (312)
T ss_dssp             HHHHHHHHHHHHHHTTSH-HHHHHHHT------TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred             hhHHHHHHHHHHHHhcCH-HHHHHHhc------cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence            566778888888776544 44444543      4599999999965 4679999999999999887644 6777888877


Q ss_pred             HHHHHHHhc--CCChhHHHHH
Q 009647          400 LALLLHLLS--TSPFDIKKEV  418 (530)
Q Consensus       400 l~~Li~lL~--~~~~~v~~eA  418 (530)
                      ++.+-.+..  .+|+++....
T Consensus       285 l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  285 LKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHHHHHHHSS--SSHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHH
Confidence            776666653  3677765443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=9.8e-06  Score=84.40  Aligned_cols=147  Identities=11%  Similarity=0.135  Sum_probs=85.7

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHH--hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALG--NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP  256 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~--nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~  256 (530)
                      .+|++..++.+.....+...|+.++-  |+..+.++.-..+.  -.+..|--++.++|+.+..-++.+++.+...+ |  
T Consensus       257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p--  331 (877)
T KOG1059|consen  257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-P--  331 (877)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-H--
Confidence            45566666655333445555555442  33322211111111  12445556667778888888888888887532 2  


Q ss_pred             hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                        ..  +...-..++++|.+.|+.++..|+-.|.-+..  .+++..+     +..|+..+..+.....+...+.-+-.||
T Consensus       332 --~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC  400 (877)
T KOG1059|consen  332 --KA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC  400 (877)
T ss_pred             --HH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence              23  23556778899999999999999999998885  3444433     4556665544444455555555555555


Q ss_pred             cCCcc
Q 009647          337 AGDSS  341 (530)
Q Consensus       337 ~~~~~  341 (530)
                      +.+..
T Consensus       401 S~snY  405 (877)
T KOG1059|consen  401 SQSNY  405 (877)
T ss_pred             hhhhh
Confidence            55443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4.9e-07  Score=87.68  Aligned_cols=185  Identities=17%  Similarity=0.181  Sum_probs=153.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchh
Q 009647          277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ  356 (530)
Q Consensus       277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~  356 (530)
                      .+.+-+..|+--|.+++. +-++...++..|++..++.++ .+.+..++..|.++||..+..++.....+++      .|
T Consensus        95 ~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E------~~  166 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIE------LG  166 (342)
T ss_pred             CCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH------cc
Confidence            356778888888888887 445666788899999999988 6889999999999999999999887777775      46


Q ss_pred             hHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCCC
Q 009647          357 VIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEGE  433 (530)
Q Consensus       357 ~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~~  433 (530)
                      +++.|+..|.+.++ .+|..|.++++++....+.....+...++...|..+|++  .+...+..|+..+.++....    
T Consensus       167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~----  242 (342)
T KOG2160|consen  167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED----  242 (342)
T ss_pred             cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh----
Confidence            99999999987655 788999999999999998989999998889999999988  66788899999999998642    


Q ss_pred             CCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647          434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  479 (530)
Q Consensus       434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~  479 (530)
                            ......+...+.-..+.++..+.+.++...++.++...+.
T Consensus       243 ------~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  243 ------KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             ------hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence                  1223345566777788888888888888888887776664

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=4.9e-07  Score=87.64  Aligned_cols=186  Identities=15%  Similarity=0.192  Sum_probs=150.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcH
Q 009647          104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP  181 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~  181 (530)
                      .+.+++.+..|+..|..++..-++.  ..++..|++++++.+|.+++ ..++..|+|+|+..+.+++.....++  ++.+
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            4678999999999999987654443  56889999999999988765 56766699999999999998888887  7999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      .|+..|++..+..++..|+++++++....+...+.++..++...|..++++  .+..+++.++..+++|...+.  ...+
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s~~d  247 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--SDED  247 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--hhhh
Confidence            999999987778899999999999999999999999999999999999998  568889999999999987642  2233


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      ++...++...+..+....+.++...+..++..+..
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            44344555556666666677777777666655543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=2e-06  Score=90.13  Aligned_cols=285  Identities=15%  Similarity=0.115  Sum_probs=212.5

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcC-CCCHHHHHHHHHHHHhhcCCCc--
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGE--  211 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~-~~~~~v~~~a~~~L~nla~d~~--  211 (530)
                      +.-||.|+.-+.+..-.+.++.|+..|..+|.   ..+..|. .++++|++.|.. ..++++...++-++.++....+  
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            34678888888766666778899999999995   3455554 589999999976 3679999999999999986432  


Q ss_pred             ----h----------hHHH-HHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc
Q 009647          212 ----E----------FRNV-LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR  276 (530)
Q Consensus       212 ----~----------~r~~-~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~  276 (530)
                          .          +.+. +...+.|..|+..+...|..++..++-.|+++.+...++....++....++..|+.+|.+
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                1          2222 345688999999999999999999999999998776444333344456789999999998


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccchhcccCCCc
Q 009647          277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI  353 (530)
Q Consensus       277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~  353 (530)
                      .-+.++-+++..|..|+.+++...+.+.-.+++.+|..++...+   ..-|...|+..|-|+...+....+.+.+     
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-----  252 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-----  252 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-----
Confidence            88899999999999999866655555555788999999886433   2245679999999999887666555553     


Q ss_pred             chhhHHHHHHHhcc---Cc--------HhH--HHHHHHHHHHHhcC-C----HHHHH-HHHhCCcHHHHHHHhcCC--Ch
Q 009647          354 TDQVIAVLVKCLKS---EH--------RVL--KKEAAWVLSNIAAG-S----VEHKQ-LIHSSEALALLLHLLSTS--PF  412 (530)
Q Consensus       354 ~~~~l~~L~~lL~~---~~--------~~i--~~~A~~~Lsnl~~~-~----~~~~~-~li~~~~l~~Li~lL~~~--~~  412 (530)
                       .+.+|.|..+|.-   .+        ..|  ...++.+++-++.. +    ..+.+ .+...+++..|..++.++  ..
T Consensus       253 -~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~  331 (970)
T KOG0946|consen  253 -GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA  331 (970)
T ss_pred             -cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence             4799999987743   22        111  24566667766542 1    23443 456778999999998766  46


Q ss_pred             hHHHHHHHHHHHhcCCC
Q 009647          413 DIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       413 ~v~~eA~~aL~nl~~~~  429 (530)
                      +|+.++.-++++.+++.
T Consensus       332 dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  332 DILTESIITVAEVVRGN  348 (970)
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            89999999999998864

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.76  E-value=4.7e-06  Score=86.80  Aligned_cols=309  Identities=14%  Similarity=0.089  Sum_probs=190.5

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH--HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC-C
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR--NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP-K  255 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r--~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-~  255 (530)
                      ++...+..|.+ .++.++.+|+-.++.|+.--..+.  ..+-..|.  .|...|...+++++-..+.++..++.-..- +
T Consensus       800 i~stiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence            45566777877 789999999999999885222221  11222232  355677777888877666666665532100 0


Q ss_pred             chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647          256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL  335 (530)
Q Consensus       256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl  335 (530)
                      -.+ -  ..+++|.|..+|.+....++.++...++.+++..++++..----.++--|+++|. +-+.+++..|..++|.|
T Consensus       877 m~p-P--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~I  952 (1172)
T KOG0213|consen  877 MTP-P--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYI  952 (1172)
T ss_pred             cCC-C--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHH
Confidence            001 1  4689999999999999999999999999999987776543222345566788884 55668888999999988


Q ss_pred             hcCCccc--cchhccc--------------------CCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647          336 VAGDSST--ISDVLVP--------------------GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL  393 (530)
Q Consensus       336 ~~~~~~~--~~~~i~~--------------------g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~  393 (530)
                      +..-..+  ...+++.                    .......++|.|+.=...+...|+...+.+++-+.....+....
T Consensus       953 akaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemskd 1032 (1172)
T KOG0213|consen  953 AKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD 1032 (1172)
T ss_pred             HHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh
Confidence            7432111  0000000                    00012345666666666677788888888887775432222111


Q ss_pred             HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-------cCCHHH
Q 009647          394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-------SADIEA  466 (530)
Q Consensus       394 li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-------~~d~~i  466 (530)
                      .+- -+.|.|.+.|.+.|..-|.-|+.++.+++.++.   |              -|+...++.||+       ...|.+
T Consensus      1033 Yiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~---g--------------~g~eda~iHLLN~iWpNIle~sPhv 1094 (1172)
T KOG0213|consen 1033 YIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP---G--------------TGCEDALIHLLNLIWPNILETSPHV 1094 (1172)
T ss_pred             HHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC---C--------------cCcHHHHHHHHHHhhhhhcCCChHH
Confidence            111 267888899999999999999999999998652   1              134444444443       245666


Q ss_pred             HHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          467 ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       467 ~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      +....++++.+-....    ...+     +..+.+=.+|+...|++.-..+.+..
T Consensus      1095 iqa~~e~~eg~r~~Lg----~~~~-----~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1095 IQAFDEAMEGLRVALG----PQAM-----LKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             HHHHHHHHHHHHHHhc----hHHH-----HHHHHHhccCcHHHHHHHHHHHHHhH
Confidence            6666666665532211    1111     22233335788887777665555443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.75  E-value=4.3e-06  Score=82.27  Aligned_cols=324  Identities=16%  Similarity=0.117  Sum_probs=214.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHH------HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETA------LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA  166 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~i------i~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia  166 (530)
                      +..++.++.  +...++.....+.-+-.+|+..+.. ...+      ...-..+.++.+|..++ .-++-.++|++..++
T Consensus        67 v~~fi~LlS--~~~kdd~v~yvL~li~DmLs~d~sr-~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   67 VKTFINLLS--HIDKDDTVQYVLTLIDDMLSEDRSR-VDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHhc--hhhhHHHHHHHHHHHHHHHhhCchH-HHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence            344444443  2233445566677777887755321 1111      12335778888888766 333333889999988


Q ss_pred             cCChhhHHh-hcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHH
Q 009647          167 AGKQEETKA-LLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAA  242 (530)
Q Consensus       167 ~~~~~~~~~-i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~  242 (530)
                      ...+..... ..+ -...+-..++++.+.+-..-|+.||.-+.. -+++|..+...+++..++..+.+  .+..++-..+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            544322111 111 233444555555667788889999999998 57999999999999999998843  3677888899


Q ss_pred             HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCc------hhHHHHHhcCchHHHHHH
Q 009647          243 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSN------VATSLLVKSGVLQLLVER  315 (530)
Q Consensus       243 ~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~------~~~~~i~~~g~l~~Lv~l  315 (530)
                      .|++-|+..  |... +.+...+.++.|..++.+. .+.|..-++.++.|+.+..+      +....++..++.+.+-.+
T Consensus       222 fciWlLtFn--~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L  298 (442)
T KOG2759|consen  222 FCIWLLTFN--PHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL  298 (442)
T ss_pred             HHHHHhhcC--HHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence            999988865  3333 5555678999999999855 46788889999999998653      344556666655554433


Q ss_pred             Hh-cCCCccchhhhHHHHhh--------hhcCCccccchhcccCCC---------------------cchhhHHHHHHHh
Q 009647          316 LA-TSNSLQLLIPVLRSLGN--------LVAGDSSTISDVLVPGHG---------------------ITDQVIAVLVKCL  365 (530)
Q Consensus       316 L~-~~~~~~v~~~al~~L~n--------l~~~~~~~~~~~i~~g~~---------------------~~~~~l~~L~~lL  365 (530)
                      .. .-.|+++... +..|..        +++.++ .... +.+|..                     -+..++..|+.+|
T Consensus       299 ~~rkysDEDL~~d-i~~L~e~L~~svq~LsSFDe-Y~sE-l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lL  375 (442)
T KOG2759|consen  299 EERKYSDEDLVDD-IEFLTEKLKNSVQDLSSFDE-YKSE-LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLL  375 (442)
T ss_pred             HhcCCCcHHHHHH-HHHHHHHHHHHHHhhccHHH-HHHH-HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHH
Confidence            32 1234443322 211111        111111 0000 112210                     1346889999999


Q ss_pred             ccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          366 KSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       366 ~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      ..+ +|.+-.-||.=|+....+.|+....+.+.|+=..++++++++|++|+.+|+.|+--+..
T Consensus       376 e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  376 ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            765 58889999999999999999999989999999999999999999999999999876643

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.72  E-value=2.2e-06  Score=84.23  Aligned_cols=234  Identities=17%  Similarity=0.159  Sum_probs=163.0

Q ss_pred             HHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhh-cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc
Q 009647          144 QCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHL-GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ  220 (530)
Q Consensus       144 ~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL-~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~  220 (530)
                      ..+.+..++.-..-|+.||.-+..-++ .+...+  +++..++..+ +...+.+++.+.+.|+.-+.. ++.....+...
T Consensus       163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~  240 (442)
T KOG2759|consen  163 EQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRF  240 (442)
T ss_pred             HHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhc
Confidence            334443333333458889998887653 555555  6888888888 555678899998888888887 55666777888


Q ss_pred             CChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCCchh----hHHHhhchHHHHHHHhc---cCCHHHHHHHHHHHHHh
Q 009647          221 GALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPAT----ELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYL  292 (530)
Q Consensus       221 g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~~----~~v~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L  292 (530)
                      +.|+.|..++++. ...+.|.++.++.|++........+    ..+ ..+-++..++.|.   .+|+++..+.-..-..|
T Consensus       241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m-v~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L  319 (442)
T KOG2759|consen  241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM-VLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKL  319 (442)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-HhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            9999999999864 7899999999999999643111111    112 2234444455554   45777666554333322


Q ss_pred             hcC------CchhH------------------------HHHHh--cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647          293 SAL------SNVAT------------------------SLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       293 ~~~------~~~~~------------------------~~i~~--~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  340 (530)
                      -..      .+++.                        ..+-+  ..++..|+.+|..+.++.++.-||.=||..+...+
T Consensus       320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP  399 (442)
T KOG2759|consen  320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP  399 (442)
T ss_pred             HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc
Confidence            210      11121                        12212  23677899999777789999999999999999988


Q ss_pred             cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647          341 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       341 ~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~  386 (530)
                      .....+.+      .|+=..++.+++|+++.||.+|+.++..+..+
T Consensus       400 ~gk~vv~k------~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  400 EGKAVVEK------YGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             hHhHHHHH------hchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            87777764      57999999999999999999999999877654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=4.4e-06  Score=87.51  Aligned_cols=275  Identities=16%  Similarity=0.204  Sum_probs=177.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-----------
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-----------  171 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~-----------  171 (530)
                      .+++|.+.+..|..+|.++++.. ...........+.+.-+.-+.+++ +++...+...-.+++....+           
T Consensus       226 tq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~~-deValQaiEFWsticeEEiD~~~e~~e~~d~  303 (859)
T KOG1241|consen  226 TQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSDN-DEVALQAIEFWSTICEEEIDLAIEYGEAVDQ  303 (859)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            36889999999999999998753 223333445556666666677655 67777777777777632211           


Q ss_pred             ----h-----HHhhcCCcHHHHHhhcCC-C-----CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647          172 ----E-----TKALLPALPLLIAHLGEK-S-----SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS  236 (530)
Q Consensus       172 ----~-----~~~i~~~v~~L~~lL~~~-~-----~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~  236 (530)
                          .     ..++-+.+|.|+++|... +     +......|--||.-++.   -++|.++. .++|.+-.-+++++-.
T Consensus       304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~Vl~Fiee~i~~pdwr  379 (859)
T KOG1241|consen  304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-HVLPFIEENIQNPDWR  379 (859)
T ss_pred             CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-hhHHHHHHhcCCcchh
Confidence                0     111114789999998652 1     22344444444444432   12223333 3444444566788999


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh-HHHHHhcCchHHHHHH
Q 009647          237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVKSGVLQLLVER  315 (530)
Q Consensus       237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~i~~~g~l~~Lv~l  315 (530)
                      -++.++.++..+..+.++.....+  +.+++|.++.++.++.--++..+.|+|+.+++.-++. .......+.++.++.-
T Consensus       380 ~reaavmAFGSIl~gp~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g  457 (859)
T KOG1241|consen  380 NREAAVMAFGSILEGPEPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG  457 (859)
T ss_pred             hhhHHHHHHHhhhcCCchhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence            999999999999988654433334  5699999999999777778899999999999864433 3334445677777777


Q ss_pred             HhcCCCccchhhhHHHHhhhhcCCcc------ccchhcccCCCcchhhHHHHH-HHh---cc---CcHhHHHHHHHHHHH
Q 009647          316 LATSNSLQLLIPVLRSLGNLVAGDSS------TISDVLVPGHGITDQVIAVLV-KCL---KS---EHRVLKKEAAWVLSN  382 (530)
Q Consensus       316 L~~~~~~~v~~~al~~L~nl~~~~~~------~~~~~i~~g~~~~~~~l~~L~-~lL---~~---~~~~i~~~A~~~Lsn  382 (530)
                      |  ++.|.+..+++|++-+++..-.+      +++..       + .+.+.++ .|+   ..   .+..+|..|.-+|..
T Consensus       458 L--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~-------t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE  527 (859)
T KOG1241|consen  458 L--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA-------T-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME  527 (859)
T ss_pred             h--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc-------c-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            7  46778889999999999843211      11111       1 1233322 233   22   245899999999999


Q ss_pred             HhcCCHHHHHHHH
Q 009647          383 IAAGSVEHKQLIH  395 (530)
Q Consensus       383 l~~~~~~~~~~li  395 (530)
                      +...++..+..++
T Consensus       528 lIk~st~~vy~~v  540 (859)
T KOG1241|consen  528 LIKNSTDDVYPMV  540 (859)
T ss_pred             HHHcCcHHHHHHH
Confidence            9988776655443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.63  E-value=9.9e-06  Score=82.24  Aligned_cols=276  Identities=18%  Similarity=0.190  Sum_probs=178.8

Q ss_pred             CHHHHHHHhcC--CCChHHHHH-HHHHHHHHhcCChh-hHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647          138 AIPVLVQCLAF--GSPDEQLLE-AAWCLTNIAAGKQE-ETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       138 ~v~~Lv~lL~~--~~~~~~~~e-A~~~L~nia~~~~~-~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      ++.+...|...  .++..-++| |+.+++.+-.|..+ ....++ .++|.+...+.+ +...+++.++||+|.|+.   .
T Consensus       363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D-~~l~vk~ttAwc~g~iad---~  438 (858)
T COG5215         363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD-SCLWVKSTTAWCFGAIAD---H  438 (858)
T ss_pred             hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc-ceeehhhHHHHHHHHHHH---H
Confidence            45556666642  233455677 78999999977543 444555 699999999986 778999999999999985   3


Q ss_pred             hHHHHHhcCChhhhHhhcC---CCChhHHHHHHHHHHHhhcCCCCCchhhH-HHhhchHHHHHHHh-c-----cCCHHHH
Q 009647          213 FRNVLLSQGALPPLARMML---PNKGSTVRTAAWALSNLIKGPDPKPATEL-IKVDGLLDAILRHL-K-----RADEELT  282 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~-v~~~~~l~~L~~lL-~-----~~d~~v~  282 (530)
                      ..+.+-.+|-+++.++-..   .+.+.+..+++|+.-||..+- ++..++. -....+.+.++.-| .     ..+...+
T Consensus       439 va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~-a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R  517 (858)
T COG5215         439 VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI-AKAVREVESFLAKFYLAILNALVKGTELALNESNLR  517 (858)
T ss_pred             HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh-hhhhccccchhHHHHHHHHHHHHHHHHhhccchhHH
Confidence            4556666777777765332   346788899999999998653 2222110 00123334443322 1     2334677


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc----------C----CCccchhhhHHHHhhhhcCCccccchhcc
Q 009647          283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT----------S----NSLQLLIPVLRSLGNLVAGDSSTISDVLV  348 (530)
Q Consensus       283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~----------~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~  348 (530)
                      .....+|+.|..-.++....++ .|+.......|..          .    .-.+++.+-+..|..++......+..+- 
T Consensus       518 ~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-  595 (858)
T COG5215         518 VSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-  595 (858)
T ss_pred             HHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-
Confidence            7777777777764443333221 2333322222210          0    1234556667777777655444333333 


Q ss_pred             cCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          349 PGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       349 ~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                            ..++..++++|.+.++ .+-.+...+|++++..-.++...-.. .++|.|.+.|...+..+..-|+..++.++.
T Consensus       596 ------D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlan  668 (858)
T COG5215         596 ------DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLAN  668 (858)
T ss_pred             ------HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence                  3588889999988765 56678889999998865555555444 489999999998898899999999998875

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.60  E-value=8.5e-06  Score=82.73  Aligned_cols=357  Identities=15%  Similarity=0.150  Sum_probs=203.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh----------
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE----------  172 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~----------  172 (530)
                      .+++|.+.|..|..+|.|++... ......+.+.-+.....+++++++ +++...|...-..|+....+.          
T Consensus       230 tq~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~  307 (858)
T COG5215         230 TQGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEV  307 (858)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccC
Confidence            36889999999999999997643 223333445555556667777765 555556655554444221110          


Q ss_pred             --------HHhhcCCcHHHHHhhcCC-C-------------------------------------------CHHHHHHHH
Q 009647          173 --------TKALLPALPLLIAHLGEK-S-------------------------------------------SSPVAEQCA  200 (530)
Q Consensus       173 --------~~~i~~~v~~L~~lL~~~-~-------------------------------------------~~~v~~~a~  200 (530)
                              +.++.+.+|.|+.+|... +                                           +..=++.|+
T Consensus       308 p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaav  387 (858)
T COG5215         308 PAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAV  387 (858)
T ss_pred             chhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHH
Confidence                    111225789999998641 1                                           111256666


Q ss_pred             HHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---c
Q 009647          201 WALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---R  276 (530)
Q Consensus       201 ~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~---~  276 (530)
                      -++|.+-.+.. .++..+ ...++|.+...+.++..-+...++||+..++.+-     .+.+.-.+-++..++-..   .
T Consensus       388 mAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-----a~~i~p~~Hl~~~vsa~liGl~  461 (858)
T COG5215         388 MAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-----AMIISPCGHLVLEVSASLIGLM  461 (858)
T ss_pred             HHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-----HHhcCccccccHHHHHHHhhhh
Confidence            67776664322 233333 3456788888887777788999999999998642     122222233333332221   3


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHH--HhcCchHHHHHHHh-----cCCCccchhhhHHHHhhhhcCCccccchhccc
Q 009647          277 ADEELTTEVAWVVVYLSALSNVATSLL--VKSGVLQLLVERLA-----TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP  349 (530)
Q Consensus       277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i--~~~g~l~~Lv~lL~-----~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  349 (530)
                      +.+.+..+++|..-++.+.-.+....+  .-....+.+++-|.     ..++...+..+..+||.++...++....++..
T Consensus       462 D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~  541 (858)
T COG5215         462 DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG  541 (858)
T ss_pred             ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            457889999999999997532222110  00112223333222     13455678889999999887765443222210


Q ss_pred             C----CCcchhhHHHHHHHhccCc----HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChh-HHHHHHH
Q 009647          350 G----HGITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD-IKKEVAY  420 (530)
Q Consensus       350 g----~~~~~~~l~~L~~lL~~~~----~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~-v~~eA~~  420 (530)
                      =    ...-...+..+-+.+...+    .+++.+-|.+|..|.+..+..+..+-+ .++..++++|++.++. +-.+...
T Consensus       542 ~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~~dV~~  620 (858)
T COG5215         542 FYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAFGDVYT  620 (858)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhhhHHHH
Confidence            0    0000012222333333332    356677777777776654333333222 2667888999877544 4566778


Q ss_pred             HHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647          421 VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  479 (530)
Q Consensus       421 aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~  479 (530)
                      +|++++..-+          ++ -.-.-..++|.|..-|+..|..+...+...+..+..
T Consensus       621 aIsal~~sl~----------e~-Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlan  668 (858)
T COG5215         621 AISALSTSLE----------ER-FEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLAN  668 (858)
T ss_pred             HHHHHHHHHH----------HH-HHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            8888875210          11 112235678999998988888888777776666543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=7.4e-06  Score=88.36  Aligned_cols=278  Identities=14%  Similarity=0.141  Sum_probs=201.5

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHH
Q 009647          106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL  183 (530)
Q Consensus       106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L  183 (530)
                      +--+.|+.|-..+-..=+.+.+||-       =+|..++.|-+   ..-+.-|+..|..+-.-.+=....-+  |+.|..
T Consensus       448 ~FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV  517 (1387)
T KOG1517|consen  448 PFFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYV  517 (1387)
T ss_pred             chHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence            4456788888888777666777775       24556665542   11224477777776654443333333  899999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-C--ChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          184 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-N--KGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~--~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                      ++||++ +..+++-..+++-..|-.-++.++..++..++-...++.|.+ +  +++-+..|++.|+.++++. +.. .+.
T Consensus       518 LKLLQS-~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~lG-Q~a  594 (1387)
T KOG1517|consen  518 LKLLQS-SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-KLG-QKA  594 (1387)
T ss_pred             HHHhcc-chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-chh-HHH
Confidence            999998 778999999988888877678899888988888889998886 3  4688899999999999873 222 233


Q ss_pred             HHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC-
Q 009647          261 IKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-  338 (530)
Q Consensus       261 v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-  338 (530)
                      ....+.+...+..|.++ .+-++..+|-||+.|-.+.++..-.-...++..+|+.+| ..+-++|+..|+.|||-+..+ 
T Consensus       595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhccc
Confidence            34678888888888875 577889999999999987776665556788999999998 578899999999999999875 


Q ss_pred             ---Cccccchh---cccCCC--cchhhH----HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647          339 ---DSSTISDV---LVPGHG--ITDQVI----AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS  397 (530)
Q Consensus       339 ---~~~~~~~~---i~~g~~--~~~~~l----~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~  397 (530)
                         .++++..+   ++....  .-...+    -.++.+++...+-++++..-+++.++.+...+...+.-.
T Consensus       674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n  744 (1387)
T KOG1517|consen  674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGN  744 (1387)
T ss_pred             ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhh
Confidence               33443332   110000  001222    267778888999999999999999998877666655443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.49  E-value=1.4e-05  Score=79.36  Aligned_cols=272  Identities=18%  Similarity=0.131  Sum_probs=179.7

Q ss_pred             HHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChhhHHhhcC-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC
Q 009647          132 TALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGE  209 (530)
Q Consensus       132 ~ii~~g~v~~Lv~lL~~~~~~-~~~~eA~~~L~nia~~~~~~~~~i~~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d  209 (530)
                      .+-..|.+..|++++..++.. .++.+|+..|..+...  ++.+.+.. ++..++.+-.....++.....+.+|+++-.+
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            344578999999999977643 3456899999998764  45666662 3444444444445689999999999999999


Q ss_pred             CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHH
Q 009647          210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV  289 (530)
Q Consensus       210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L  289 (530)
                      +++....+++.|++..++--....++.+.++|+.+|.|.+-+..-...+.+| +..+-..|..+-.+.|+-++..||.+.
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AClAV  331 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHACLAV  331 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence            9999999999999999998888889999999999999987653223334444 567777788777788888899999999


Q ss_pred             HHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc
Q 009647          290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH  369 (530)
Q Consensus       290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~  369 (530)
                      +-|+.+ .+.-..+...|.+..+-.++. +-++.-          ++.......|-       ....-++.|+.+|.+..
T Consensus       332 ~vlat~-KE~E~~VrkS~TlaLVEPlva-~~DP~~----------FARD~hd~aQG-------~~~d~LqRLvPlLdS~R  392 (832)
T KOG3678|consen  332 AVLATN-KEVEREVRKSGTLALVEPLVA-SLDPGR----------FARDAHDYAQG-------RGPDDLQRLVPLLDSNR  392 (832)
T ss_pred             hhhhhh-hhhhHHHhhccchhhhhhhhh-ccCcch----------hhhhhhhhhcc-------CChHHHHHhhhhhhcch
Confidence            999974 344445555665544333332 333221          11111111110       02357888999999765


Q ss_pred             HhHHHHHHHHHHHHhc-CCHHH-HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647          370 RVLKKEAAWVLSNIAA-GSVEH-KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  425 (530)
Q Consensus       370 ~~i~~~A~~~Lsnl~~-~~~~~-~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl  425 (530)
                      ..-+--+++-+..=++ .+.+. .+.+-+-|.|..|-++..+++..-.+-|..+|.-+
T Consensus       393 ~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  393 LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            5444333333322222 12122 22334568899999999887765445555555544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=0.00013  Score=77.30  Aligned_cols=212  Identities=20%  Similarity=0.206  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHH-HHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH-------hhcC---
Q 009647          110 KRVNALRELRRLLSRFEFPPIETALKAGAIPV-LVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK-------ALLP---  178 (530)
Q Consensus       110 ~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~-Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~-------~i~~---  178 (530)
                      ...+-+..+|.-+....+++.  ....++... .+++|..+..    |-=..||.-+++++--.++       .+++   
T Consensus        29 vI~kE~a~IRa~ire~~~d~~--~r~rniaKLlYi~MLGypah----FGqieclKLias~~f~dKRiGYLaamLlLdE~q  102 (866)
T KOG1062|consen   29 VIQKECAAIRASIREPTNDPR--KRHRNIAKLLYIHMLGYPAH----FGQIECLKLIASDNFLDKRIGYLAAMLLLDERQ  102 (866)
T ss_pred             HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHhCCCcc----chhhHHHHHhcCCCchHHHHHHHHHHHHhccch
Confidence            445556667776655444443  223333332 2355554432    2223455555554321111       0001   


Q ss_pred             -----CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          179 -----ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       179 -----~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                           .+..+.+=|++ ++.-+.-.|+.+||+|+.  ++...     ...|-+.+++++.++.+++.|+.|...+.+-. 
T Consensus       103 dvllLltNslknDL~s-~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-  173 (866)
T KOG1062|consen  103 DLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-  173 (866)
T ss_pred             HHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-
Confidence                 22233333444 566688899999999996  34322     34577888999999999999999999998642 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc--------------C
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------S  319 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~--------------~  319 (530)
                      |.    .  ...+++...++|.+.+..|.......+..+|..+++.....-+  +++.++..|..              -
T Consensus       174 P~----l--~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi  245 (866)
T KOG1062|consen  174 PD----L--VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI  245 (866)
T ss_pred             ch----H--HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence            32    3  3578888999999888889888888888888877766666544  66767766641              1


Q ss_pred             CCccchhhhHHHHhhhhcCCccccc
Q 009647          320 NSLQLLIPVLRSLGNLVAGDSSTIS  344 (530)
Q Consensus       320 ~~~~v~~~al~~L~nl~~~~~~~~~  344 (530)
                      ++|-++..+++.|+-+-.++.+..+
T Consensus       246 ~dPFLQi~iLrlLriLGq~d~daSd  270 (866)
T KOG1062|consen  246 SDPFLQIRILRLLRILGQNDADASD  270 (866)
T ss_pred             CchHHHHHHHHHHHHhcCCCccHHH
Confidence            4566677888888877766655443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.47  E-value=3.4e-07  Score=61.21  Aligned_cols=40  Identities=35%  Similarity=0.533  Sum_probs=37.9

Q ss_pred             CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       387 ~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      ++++++.+++.|++|+|+++|.+++++++++|+|+|+|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>TIGR02270 conserved hypothetical protein

Probab=98.47  E-value=3.5e-05  Score=78.76  Aligned_cols=241  Identities=18%  Similarity=0.098  Sum_probs=132.4

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHH
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  217 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  217 (530)
                      +++.++..|..+...+....+++++.  ....+.       ++..|+..|.+ +++.++..++.+|+.+-.         
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~-------~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~---------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL--AQEDAL-------DLRSVLAVLQA-GPEGLCAGIQAALGWLGG---------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH-------HHHHHHHHhcC-CCHHHHHHHHHHHhcCCc---------
Confidence            56667777754444444444444442  222221       25667777766 566677777777776433         


Q ss_pred             HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc
Q 009647          218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN  297 (530)
Q Consensus       218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~  297 (530)
                        ....+.|+.+++++++.++..++-++...-              ....+.+..+|.++|+.++..++.+|+++-..  
T Consensus       116 --~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       116 --RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             --hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence              124566777777777777766665554411              12234566667777777777777777777641  


Q ss_pred             hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647          298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA  377 (530)
Q Consensus       298 ~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~  377 (530)
                               ..++.|...+ .+.++.|+..|+.+++.+-  ++               ..++.+..+...........+.
T Consensus       178 ---------~a~~~L~~al-~d~~~~VR~aA~~al~~lG--~~---------------~A~~~l~~~~~~~g~~~~~~l~  230 (410)
T TIGR02270       178 ---------LSESTLRLYL-RDSDPEVRFAALEAGLLAG--SR---------------LAWGVCRRFQVLEGGPHRQRLL  230 (410)
T ss_pred             ---------cchHHHHHHH-cCCCHHHHHHHHHHHHHcC--CH---------------hHHHHHHHHHhccCccHHHHHH
Confidence                     2344455555 4667777777777776542  11               2444445433333333333333


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHh
Q 009647          378 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID  457 (530)
Q Consensus       378 ~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~  457 (530)
                      .++...  +.+         ..++.|..+++++.  ++..++++++.+-        .|             ..++.|+.
T Consensus       231 ~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg--------~p-------------~av~~L~~  276 (410)
T TIGR02270       231 VLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG--------DV-------------EAAPWCLE  276 (410)
T ss_pred             HHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC--------Cc-------------chHHHHHH
Confidence            333322  222         24556666666543  6667777776552        11             23455555


Q ss_pred             hhccCCHHHHHHHHHHHHHHH
Q 009647          458 LVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       458 lL~~~d~~i~~~~L~~L~~il  478 (530)
                      .+.  |+.+...+-+++..|.
T Consensus       277 ~l~--d~~~aR~A~eA~~~It  295 (410)
T TIGR02270       277 AMR--EPPWARLAGEAFSLIT  295 (410)
T ss_pred             Hhc--CcHHHHHHHHHHHHhh
Confidence            554  3336666666666664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.44  E-value=0.00015  Score=78.12  Aligned_cols=168  Identities=15%  Similarity=0.122  Sum_probs=132.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHH
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL  182 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~  182 (530)
                      +.+++...++.|++.+-.-++.+++-+       -+.|-++.+.. ..+.++++-.-..|.+++...++...   -+++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dms-------sLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l---LavNt   96 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMS-------SLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL---LAVNT   96 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH---HHHHH
Confidence            457788899999988777667766532       25677777777 44578887788899999988874332   37788


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  262 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~  262 (530)
                      +.+=|++ +++.+|..|+.+++.+=.       .-+-..+++++.+++.++++.++++|+.|+.++.+-+     .+.+.
T Consensus        97 i~kDl~d-~N~~iR~~AlR~ls~l~~-------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-----~~l~~  163 (757)
T COG5096          97 IQKDLQD-PNEEIRGFALRTLSLLRV-------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-----KDLYH  163 (757)
T ss_pred             HHhhccC-CCHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-----Hhhhh
Confidence            8888887 899999999999997643       2233456899999999999999999999999999653     23444


Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      ..|.+..+..++.+.||.+..+|+.+|..+..
T Consensus       164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         164 ELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            56788888888889999999999999988875

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.1e-05  Score=81.44  Aligned_cols=301  Identities=12%  Similarity=0.103  Sum_probs=194.9

Q ss_pred             HHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH
Q 009647          200 AWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE  279 (530)
Q Consensus       200 ~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~  279 (530)
                      +-+|-.++....-.|.-+.+..+.++|+.+|.+|+..+.-.++..++|+.-.-++  ..+.+...+++..|++++.+.|.
T Consensus       410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHHhhHHHHHHHHhhcchh
Confidence            3345566665557788889999999999999998888888888888888754332  34445578999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCchhHH-HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc---ccchhcccCCCcch
Q 009647          280 ELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS---TISDVLVPGHGITD  355 (530)
Q Consensus       280 ~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~---~~~~~i~~g~~~~~  355 (530)
                      .++.+..|.+.++.-+.+...+ ..+..-++..++.+. ..+...++..++..|.|+...+..   ..+..+...  -..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~--p~~  564 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT--PRR  564 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecC--hHH
Confidence            9999999999999876544432 234455678888877 578889999999999999874322   223222210  011


Q ss_pred             hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcC--CC---------hhHHHHHHHHHH
Q 009647          356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--SP---------FDIKKEVAYVLG  423 (530)
Q Consensus       356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~--~~---------~~v~~eA~~aL~  423 (530)
                      -+...|+.-+...+|-...+.|+.|-++++.+....+.++.. .++..+..+|..  +.         ..+-.--..+..
T Consensus       565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            256667777788888777788999999999886666665543 455554444411  11         111111112222


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCCh--HHHHhhhc---cCCHHHHHHHHHHHHHHHccCCCC-------cchhHHH
Q 009647          424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCL--SGFIDLVR---SADIEAARLGLQFMELVLRGMPNH-------EGTKLVE  491 (530)
Q Consensus       424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i--~~L~~lL~---~~d~~i~~~~L~~L~~il~~~~~~-------~~~~~i~  491 (530)
                      |+..++   ++.            +.+..  |++=..=+   .++.++-....+.+.++...-+..       +.+..+.
T Consensus       645 ~l~e~~---d~f------------~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~  709 (743)
T COG5369         645 NLSENS---DKF------------KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC  709 (743)
T ss_pred             cccccc---ccc------------ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH
Confidence            222211   000            11122  23222211   123456666677767765432221       1235666


Q ss_pred             HhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647          492 REDGIDAMERFQFHENEDLRNMANGLVDK  520 (530)
Q Consensus       492 ~~ggl~~L~~L~~~~~~~i~~~A~~il~~  520 (530)
                      +.|.-+.+.++|.|++..|++++-..|+.
T Consensus       710 ~~G~~e~l~k~q~~~Sl~vrek~~taL~~  738 (743)
T COG5369         710 ANGIREWLVKIQAKDSLIVREKIGTALEN  738 (743)
T ss_pred             HccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence            77888899999999999999999888763

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.37  E-value=2e-05  Score=78.21  Aligned_cols=238  Identities=16%  Similarity=0.176  Sum_probs=165.5

Q ss_pred             HHHhhchHHHHHHHhccCCH--HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          260 LIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      .+...+++..|++++..++-  .++.++...|-.+..  .++.+.+...| +..++.+-.....++.....+..|+++..
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK  251 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence            34467999999999998875  468999999988874  34555565555 55555544333456677889999999999


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      ++++..+.++..      |++..++-.....+|.+.+.++.+|+|++-+. ......+++..+-+-|.-+-.+.|.-++.
T Consensus       252 HSeet~~~Lvaa------~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~  325 (832)
T KOG3678|consen  252 HSEETCQRLVAA------GGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRL  325 (832)
T ss_pred             hhHHHHHHHHhh------cccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence            999988888865      69999998898889999999999999998764 34445578888888888887777888999


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC---C----------------------------hHHHHhhhccCCHH
Q 009647          417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG---C----------------------------LSGFIDLVRSADIE  465 (530)
Q Consensus       417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g---~----------------------------i~~L~~lL~~~d~~  465 (530)
                      .||.+++-++.+.+           .-..+...|   .                            ++.|+-+|++...+
T Consensus       326 ~AClAV~vlat~KE-----------~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~E  394 (832)
T KOG3678|consen  326 HACLAVAVLATNKE-----------VEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLE  394 (832)
T ss_pred             HHHHHHhhhhhhhh-----------hhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhh
Confidence            99999999987532           111111222   2                            33344444432222


Q ss_pred             HHHHHHHHHHHHHccCCC-C-cchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 009647          466 AARLGLQFMELVLRGMPN-H-EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD  519 (530)
Q Consensus       466 i~~~~L~~L~~il~~~~~-~-~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~  519 (530)
                      .+  ++.+++.-++..-+ . ...+.|.+.|+++.|.++..++|+.-.+.|...|.
T Consensus       395 Aq--~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt  448 (832)
T KOG3678|consen  395 AQ--CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT  448 (832)
T ss_pred             hh--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            22  22222222221100 0 12467889999999999999998877777777665

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.5e-06  Score=87.45  Aligned_cols=306  Identities=12%  Similarity=0.118  Sum_probs=198.7

Q ss_pred             HHHHHHHHHhcCChh--hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC
Q 009647          157 EAAWCLTNIAAGKQE--ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP  232 (530)
Q Consensus       157 eA~~~L~nia~~~~~--~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~  232 (530)
                      -++|++.-.+...+-  -+.-+.  +.+..|+++|+. |+.-+..-+...++|........+..++..|+|..|++++.+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            366766655533221  112222  489999999987 667777788889999998888999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCch---hHHHHHhcC--
Q 009647          233 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV---ATSLLVKSG--  307 (530)
Q Consensus       233 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~---~~~~i~~~g--  307 (530)
                      .+..++.+..|.+..+..+......++.+ ..-+...++.+.++++-.++..++..|.|+++++..   ..+..++..  
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~L-akig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFL-AKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhH-HhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            99999999999999999887655555554 356778888999888889999999999999985432   222222221  


Q ss_pred             --chHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc---------Cc--HhHHH
Q 009647          308 --VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS---------EH--RVLKK  374 (530)
Q Consensus       308 --~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~---------~~--~~i~~  374 (530)
                        ....|++.+ ...+|--..+.+..|-+++..++...+.++.     +...+..+..+|..         ++  ..+--
T Consensus       564 ~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~-----q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~  637 (743)
T COG5369         564 RYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQS-----QEDMLDSIFEILDEFAGRTPLSPGSKEEHVLL  637 (743)
T ss_pred             HHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHh-----HHHHHHHHHHHHHHHcccCCCCCCCCcccccC
Confidence              334555655 3566666677899999999888877666654     34555555544421         10  11111


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCcH--HHHHHHhc----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          375 EAAWVLSNIAAGSVEHKQLIHSSEAL--ALLLHLLS----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       375 ~A~~~Lsnl~~~~~~~~~~li~~~~l--~~Li~lL~----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                      .-..+.-|+...+...     +.+..  |++= ...    .++.++--+..|.+.|+.+....+.-+ ..-.+.++.|++
T Consensus       638 p~s~~~v~l~e~~d~f-----~r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt-ratveR~~iL~~  710 (743)
T COG5369         638 PISYTIVNLSENSDKF-----KRLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT-RATVERIQILCA  710 (743)
T ss_pred             ccceeeeccccccccc-----ccceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccc-hhhHHHHHHHHH
Confidence            1122222222211111     11111  2221 122    123457778899999987643211101 111367788888


Q ss_pred             cCChHHHHhhhccCCHHHHHHHHHHHHHH
Q 009647          449 RGCLSGFIDLVRSADIEAARLGLQFMELV  477 (530)
Q Consensus       449 ~g~i~~L~~lL~~~d~~i~~~~L~~L~~i  477 (530)
                      .|+-.-+..+-....+.+...+=.+|+++
T Consensus       711 ~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         711 NGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             ccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            88888888877777778888887888775

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.00012  Score=69.36  Aligned_cols=288  Identities=22%  Similarity=0.157  Sum_probs=178.0

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc----CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHH
Q 009647          141 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  216 (530)
Q Consensus       141 ~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~----~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  216 (530)
                      .++.||.+.+ |.++..|..-+.+++++   ..+.+.    -.++.+.+++.. ..+  .++|+.+|.|++. .+..|+.
T Consensus         7 elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    7 ELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHh-hHHHHHH
Confidence            4678888776 45667788788888766   223333    268889999987 333  7899999999998 4688888


Q ss_pred             HHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH-hh----chHHHHH-HHhccCCH--HHHHHHHHH
Q 009647          217 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK-VD----GLLDAIL-RHLKRADE--ELTTEVAWV  288 (530)
Q Consensus       217 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~----~~l~~L~-~lL~~~d~--~v~~~a~~~  288 (530)
                      +++. .+..++..+.++.....+..+..|+||++.++  ....+.. ..    ..++.++ .+..++-.  .-....+..
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            8887 78888888888888899999999999998653  2222111 01    2233333 33332221  234455667


Q ss_pred             HHHhhcCCchhHHHHHhcCchH--HHHHHHhcCCCccch-hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh
Q 009647          289 VVYLSALSNVATSLLVKSGVLQ--LLVERLATSNSLQLL-IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL  365 (530)
Q Consensus       289 L~~L~~~~~~~~~~i~~~g~l~--~Lv~lL~~~~~~~v~-~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL  365 (530)
                      +.+|+. .......+.+...++  +++. + .+.+..++ .-...+|.|.+.....+..-+ +-    ...++|.+..=+
T Consensus       156 f~nls~-~~~gR~l~~~~k~~p~~kll~-f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL-~e----~~~lLp~iLlPl  227 (353)
T KOG2973|consen  156 FANLSQ-FEAGRKLLLEPKRFPDQKLLP-F-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLL-DE----SINLLPAILLPL  227 (353)
T ss_pred             HHHHhh-hhhhhhHhcchhhhhHhhhhc-c-cccchhhhccchHHHHHhhhccchhHHHHh-cc----hHHHHHHHHhhc
Confidence            778876 444455555544332  2332 2 23344444 467788888876654443322 11    123444433322


Q ss_pred             ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647          366 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  440 (530)
Q Consensus       366 ~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  440 (530)
                      .... .              -+++...      .+|.=+++|.     .+++++++.-+.+|.-+|...           
T Consensus       228 agpe-e--------------~sEEdm~------~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-----------  275 (353)
T KOG2973|consen  228 AGPE-E--------------LSEEDMA------KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-----------  275 (353)
T ss_pred             CCcc-c--------------cCHHHHh------cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-----------
Confidence            2221 1              0122111      2344347774     467899999999999888631           


Q ss_pred             HHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHc
Q 009647          441 EHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLR  479 (530)
Q Consensus       441 ~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~  479 (530)
                      .-++++.+.|+.+.+-.+=++ .|+++...+......+.+
T Consensus       276 ~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  276 AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            335788899998887776555 678888887776666654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00063  Score=72.27  Aligned_cols=237  Identities=16%  Similarity=0.228  Sum_probs=121.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhhcCCchhH----HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccch
Q 009647          270 ILRHLKRADEELTTEVAWVVVYLSALSNVAT----SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD  345 (530)
Q Consensus       270 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~----~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~  345 (530)
                      ++++|...|++.-....-.|..++.+.+...    ..++  ..+..+..+   .++..++.-|..+||.+..+.+..+..
T Consensus       257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY--E~V~TI~~I---~~~~~LrvlainiLgkFL~n~d~NirY  331 (866)
T KOG1062|consen  257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY--ECVRTIMDI---RSNSGLRVLAINILGKFLLNRDNNIRY  331 (866)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHhc---cCCchHHHHHHHHHHHHhcCCccceee
Confidence            3445556666666666666666665332211    1111  123333321   234455556666666666555544433


Q ss_pred             hcccC----CCcchhhH----HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          346 VLVPG----HGITDQVI----AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       346 ~i~~g----~~~~~~~l----~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      +---+    ...+..++    ..++.+|++.|..||+.|+-.+..|+..+  ++..+     +..|+..|...+.+.+..
T Consensus       332 vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~  404 (866)
T KOG1062|consen  332 VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKAD  404 (866)
T ss_pred             eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHH
Confidence            21000    00011122    24778899999999999999998887543  44443     456888888778888888


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHH------HHHhcCChHHHHhhhccC-------------------------CHHH
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLV------SLVGRGCLSGFIDLVRSA-------------------------DIEA  466 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~------~l~~~g~i~~L~~lL~~~-------------------------d~~i  466 (530)
                      .+.-++.++..-.+  .+-=-|+....      .+++..++..|+.++.+.                         .+.+
T Consensus       405 ~as~I~~laEkfaP--~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l  482 (866)
T KOG1062|consen  405 IASKIAELAEKFAP--DKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPL  482 (866)
T ss_pred             HHHHHHHHHHhcCC--cchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhH
Confidence            88888887753211  11000000011      122345666677766654                         1223


Q ss_pred             HHHHHHHHHH---HHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHHHh
Q 009647          467 ARLGLQFMEL---VLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDK  520 (530)
Q Consensus       467 ~~~~L~~L~~---il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il~~  520 (530)
                      ++++.|+|.-   ++-.+.+...+..+-+...++.|++++.+.  +..+..+|...+-+
T Consensus       483 ~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K  541 (866)
T KOG1062|consen  483 LQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK  541 (866)
T ss_pred             HHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            3344444421   111111112334555678888888876543  45555555444433

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.31  E-value=8.2e-07  Score=59.34  Aligned_cols=41  Identities=29%  Similarity=0.590  Sum_probs=38.4

Q ss_pred             CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647          210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  250 (530)
Q Consensus       210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~  250 (530)
                      +++.++.+++.|++|+|+.+|.+++.++++.|+|+|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=0.00023  Score=74.53  Aligned_cols=235  Identities=14%  Similarity=0.154  Sum_probs=166.2

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc
Q 009647          197 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR  276 (530)
Q Consensus       197 ~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~  276 (530)
                      .-|+..|+.+... .-.|      +.-+-++.+|.++.+.++.-|+..+..++-.     .++.+  ...+|.|..-|.+
T Consensus       127 giAL~GLS~fvTp-dLAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLk-----YPeAl--r~~FprL~EkLeD  192 (877)
T KOG1059|consen  127 GLALSGLSCIVTP-DLAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLK-----YPEAL--RPCFPRLVEKLED  192 (877)
T ss_pred             hheecccccccCc-hhhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-----hhHhH--hhhHHHHHHhccC
Confidence            3455555555541 1223      3445688899999999999999999988742     23443  4889999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchh
Q 009647          277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ  356 (530)
Q Consensus       277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~  356 (530)
                      +|+.|+..|..+++.|++.++.+.     ....|.+..+|..+.+..+++..+..+|+++.-.+..           ...
T Consensus       193 pDp~V~SAAV~VICELArKnPkny-----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-----------gKK  256 (877)
T KOG1059|consen  193 PDPSVVSAAVSVICELARKNPQNY-----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-----------GKK  256 (877)
T ss_pred             CCchHHHHHHHHHHHHHhhCCccc-----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchh-----------hhh
Confidence            999999999999999998665442     2356888888888888899999999999998665432           236


Q ss_pred             hHHHHHHHhccCcH-hHHHHHHHHHH--HHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCC
Q 009647          357 VIAVLVKCLKSEHR-VLKKEAAWVLS--NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE  433 (530)
Q Consensus       357 ~l~~L~~lL~~~~~-~i~~~A~~~Ls--nl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~  433 (530)
                      ++++|..++.+... ++..++..++-  |+..|.+.+-..+.-  .+..|--++.++|+.++.-++-|++-+...     
T Consensus       257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL--CvqKLr~fiedsDqNLKYlgLlam~KI~kt-----  329 (877)
T KOG1059|consen  257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL--CVQKLRIFIEDSDQNLKYLGLLAMSKILKT-----  329 (877)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH--HHHHHhhhhhcCCccHHHHHHHHHHHHhhh-----
Confidence            88999999987654 66666665542  555553222222111  345666677889999999999999888742     


Q ss_pred             CCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647          434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il  478 (530)
                       .|..++.|.         ..++..|...|+.+...+|+.|+.|.
T Consensus       330 -Hp~~Vqa~k---------dlIlrcL~DkD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  330 -HPKAVQAHK---------DLILRCLDDKDESIRLRALDLLYGMV  364 (877)
T ss_pred             -CHHHHHHhH---------HHHHHHhccCCchhHHHHHHHHHHHh
Confidence             132222221         33577788888888888888887765

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.30  E-value=0.00021  Score=73.51  Aligned_cols=305  Identities=11%  Similarity=0.067  Sum_probs=186.2

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh--HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhh---cCCC
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF--RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI---KGPD  253 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~--r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~---~~~~  253 (530)
                      .|...+.+|.+ +.+.++++|+-..+.++.--..|  -..+...|.  .|..-|...++++.-..+.+++.+.   +..+
T Consensus       605 ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            56777888887 78999999999998887411111  012222232  2445566667777665555555444   3322


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                      -+|.     ..+++|.|..+|.+....+..+....++.++...++++..----.++-.|++.|. +-+.+++.+|..++|
T Consensus       682 mqpP-----i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tfG  755 (975)
T COG5181         682 MQPP-----ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETFG  755 (975)
T ss_pred             cCCc-----hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhh
Confidence            2221     4699999999999999999999999999999988776543222245566788884 667789999998888


Q ss_pred             hhhcCCccc--cchhccc----------------C----CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH-H
Q 009647          334 NLVAGDSST--ISDVLVP----------------G----HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE-H  390 (530)
Q Consensus       334 nl~~~~~~~--~~~~i~~----------------g----~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~-~  390 (530)
                      .|+..-..|  ...+++.                +    ......++|.|+.=...+...|+...+.+++-+.....+ .
T Consensus       756 ~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s  835 (975)
T COG5181         756 CISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS  835 (975)
T ss_pred             hHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH
Confidence            887432211  1111100                0    001234566666655666667777777777665432111 1


Q ss_pred             HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc----cCCHHH
Q 009647          391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR----SADIEA  466 (530)
Q Consensus       391 ~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~----~~d~~i  466 (530)
                      ...+.  -+.|.|-+.|.+.|+.-+.-|..+|.+++-++... |.       ...++      +|+++|-    .+.|.+
T Consensus       836 ~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~-------eda~I------HLlNllwpNIle~sPhv  899 (975)
T COG5181         836 LDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GD-------EDAAI------HLLNLLWPNILEPSPHV  899 (975)
T ss_pred             HHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-cc-------HHHHH------HHHHHhhhhccCCCcHH
Confidence            22222  26788889999999999999999999999876322 21       11221      2333332    355677


Q ss_pred             HHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHH
Q 009647          467 ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL  517 (530)
Q Consensus       467 ~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~i  517 (530)
                      +....++++.+-.....+    .+     ...+.+=.+|+...|++.-...
T Consensus       900 i~~~~Eg~e~~~~~lg~g----~~-----m~Yv~qGLFHPs~~VRk~ywtv  941 (975)
T COG5181         900 IQSFDEGMESFATVLGSG----AM-----MKYVQQGLFHPSSTVRKRYWTV  941 (975)
T ss_pred             HHHHHHHHHHHHHHhccH----HH-----HHHHHHhccCchHHHHHHHHHH
Confidence            776677776664332211    11     1234444689988887765433

>TIGR02270 conserved hypothetical protein

Probab=98.25  E-value=0.00019  Score=73.42  Aligned_cols=243  Identities=16%  Similarity=0.025  Sum_probs=164.0

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      +++.++..|...++.+++..+++++...  +.+.         ++..|+..|.+++..++..++.+|..+-         
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~---------  114 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG---------  114 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Confidence            6788888886546788888888887632  2211         3788899999888889999998886442         


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                          .....+.|..++.++++.++..++.++....            ....+.+..+| ++.++.++..|+++||.+-..
T Consensus       115 ----~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       115 ----GRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ----chHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                2356678889999999999888887666522            12346777788 588899999999999987532


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  418 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA  418 (530)
                                       ..++.|...+.+.++.||..|+++++-+  +.+.         .++.+..............+
T Consensus       178 -----------------~a~~~L~~al~d~~~~VR~aA~~al~~l--G~~~---------A~~~l~~~~~~~g~~~~~~l  229 (410)
T TIGR02270       178 -----------------LSESTLRLYLRDSDPEVRFAALEAGLLA--GSRL---------AWGVCRRFQVLEGGPHRQRL  229 (410)
T ss_pred             -----------------cchHHHHHHHcCCCHHHHHHHHHHHHHc--CCHh---------HHHHHHHHHhccCccHHHHH
Confidence                             3777888889999999999999999777  3333         34556664444444444444


Q ss_pred             HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH
Q 009647          419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA  498 (530)
Q Consensus       419 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~  498 (530)
                      ..++...        +.+             ..++.|..+++.++  +...++.++..+-             ....++.
T Consensus       230 ~~~lal~--------~~~-------------~a~~~L~~ll~d~~--vr~~a~~AlG~lg-------------~p~av~~  273 (410)
T TIGR02270       230 LVLLAVA--------GGP-------------DAQAWLRELLQAAA--TRREALRAVGLVG-------------DVEAAPW  273 (410)
T ss_pred             HHHHHhC--------Cch-------------hHHHHHHHHhcChh--hHHHHHHHHHHcC-------------CcchHHH
Confidence            4444433        111             24566777776544  6667777776551             1223444


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647          499 MERFQFHENEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       499 L~~L~~~~~~~i~~~A~~il~~~f~~  524 (530)
                      |..+...  +.+...|-..+++..+-
T Consensus       274 L~~~l~d--~~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       274 CLEAMRE--PPWARLAGEAFSLITGM  297 (410)
T ss_pred             HHHHhcC--cHHHHHHHHHHHHhhCC
Confidence            5444433  33778887777777663

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=3.2e-05  Score=83.60  Aligned_cols=239  Identities=16%  Similarity=0.167  Sum_probs=178.4

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      -+|..++.|-+   .--|-.|+..|+..-.-++-.-+..+.-|+.|.+++||+++..+++-..++.-..+..-+ +....
T Consensus       473 QLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQA  548 (1387)
T ss_pred             hcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHH
Confidence            35666666544   234677888999988777888888899999999999999998888877777766665332 45566


Q ss_pred             hHHHhhchHHHHHHHhcc-C--CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647          259 ELIKVDGLLDAILRHLKR-A--DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL  335 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~-~--d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl  335 (530)
                      +++. .++..++++.|.+ .  +++-+.-++.+|+-++++..-......+.+++...++.|.+.+.+-++.-++-|||.+
T Consensus       549 dLvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  549 DLVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            7764 4555666666665 2  3588999999999999987767777788888888888884323455667899999999


Q ss_pred             hcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC----CHHHHHHH------------HhCCc
Q 009647          336 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG----SVEHKQLI------------HSSEA  399 (530)
Q Consensus       336 ~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~----~~~~~~~l------------i~~~~  399 (530)
                      -...+.....-.      ..++...|..+|.++-++||..|.++|+.+..+    .+++...+            ++..+
T Consensus       628 W~d~~~Arw~G~------r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i  701 (1387)
T KOG1517|consen  628 WEDYDEARWSGR------RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLI  701 (1387)
T ss_pred             hhhcchhhhccc------cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHH
Confidence            977665433322      357899999999999999999999999999875    33333222            22222


Q ss_pred             H---HHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          400 L---ALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       400 l---~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      .   -.++.+++++++-+++|.+-+|+.++.+
T Consensus       702 ~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  702 IKGLMSLLALVSDGSPLVRTEVVVALSHFVVG  733 (1387)
T ss_pred             HhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence            2   3677788999999999999999998764

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.24  E-value=0.00099  Score=70.09  Aligned_cols=385  Identities=14%  Similarity=0.165  Sum_probs=219.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-------CChHHHHHHHHHHHHHhcCC
Q 009647           97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-------SPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-------~~~~~~~eA~~~L~nia~~~  169 (530)
                      .-+++.-+|+|.+...-.++.+.+..+...-.  ...+...++|-++......       +.. +..+.+-.|.+=....
T Consensus       639 lil~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~yk-qlv~ttv~ia~KvG~~  715 (1172)
T KOG0213|consen  639 LILIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYK-QLVDTTVEIAAKVGSD  715 (1172)
T ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchh-hHHHHHHHHHHHhCch
Confidence            33444456888887777777777765543332  2466677777777655321       111 1111111111111111


Q ss_pred             hhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHH
Q 009647          170 QEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALS  246 (530)
Q Consensus       170 ~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~  246 (530)
                              ..|...+.-|.+ .++..+...+.++.++.+.-. .--+.-++.-.+..++..++..  ...+.-+...+++
T Consensus       716 --------~~v~R~v~~lkd-e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~  786 (1172)
T KOG0213|consen  716 --------PIVSRVVLDLKD-EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV  786 (1172)
T ss_pred             --------HHHHHHhhhhcc-ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence                    134455555555 455555555544444432110 0011122233455555555543  3345555555555


Q ss_pred             HhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC--CchhHHHHHhcCchHHHHHHHhcCCCccc
Q 009647          247 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL--SNVATSLLVKSGVLQLLVERLATSNSLQL  324 (530)
Q Consensus       247 nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v  324 (530)
                      |-.-+. -++   .  ...++..++..|++..+.++..++-.++.|+.-  .-...+.+-..|+  .|.+.| ....+++
T Consensus       787 ~~lg~r-~kp---y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEv  857 (1172)
T KOG0213|consen  787 NALGGR-VKP---Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEV  857 (1172)
T ss_pred             HHHhhc-ccc---c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHH
Confidence            533221 112   1  246677888999999999999999988888741  0011122222333  366777 4778888


Q ss_pred             hhhhHHHHhhhhcCCc--cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647          325 LIPVLRSLGNLVAGDS--STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  402 (530)
Q Consensus       325 ~~~al~~L~nl~~~~~--~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~  402 (530)
                      +-..+.+|..|+..-.  ..+..+        .+++|.|..+|.+.+..|+.+++-.++.|+..+++.+..=-=..+---
T Consensus       858 LgsILgAikaI~nvigm~km~pPi--------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe  929 (1172)
T KOG0213|consen  858 LGSILGAIKAIVNVIGMTKMTPPI--------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE  929 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccCCCh--------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence            8888887777764321  111122        379999999999999999999999999999876664322100013335


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc--------------------------CChHHHH
Q 009647          403 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--------------------------GCLSGFI  456 (530)
Q Consensus       403 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~--------------------------g~i~~L~  456 (530)
                      |+++|...+..+|+.|.-+++.++..-    | |   ++.+..|++.                          .++|.|.
T Consensus       930 LlelLkahkK~iRRaa~nTfG~IakaI----G-P---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalm 1001 (1172)
T KOG0213|consen  930 LLELLKAHKKEIRRAAVNTFGYIAKAI----G-P---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALM 1001 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhc----C-H---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHH
Confidence            778888888899999999999887531    1 2   3444444332                          3567777


Q ss_pred             hhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          457 DLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       457 ~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      +-...++..++.-+|.++.-+++...+ -..+.|  .-..+.|+.-..+.+.--++.|..++.+.
T Consensus      1002 neYrtPe~nVQnGVLkalsf~Feyige-mskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             hhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence            766667777888888888877764321 011111  12234555555666666666677666654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.00038  Score=73.65  Aligned_cols=278  Identities=17%  Similarity=0.169  Sum_probs=175.6

Q ss_pred             CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHh
Q 009647          149 GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR  228 (530)
Q Consensus       149 ~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~  228 (530)
                      +-.+-++..||.++..+-+-++++...++..|.   .+|.+ .++-|.-.|+.++-.+|.+.-+.     -++-...|++
T Consensus       154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~---~LLaD-~splVvgsAv~AF~evCPerldL-----IHknyrklC~  224 (968)
T KOG1060|consen  154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK---KLLAD-RSPLVVGSAVMAFEEVCPERLDL-----IHKNYRKLCR  224 (968)
T ss_pred             CCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH---HHhcC-CCCcchhHHHHHHHHhchhHHHH-----hhHHHHHHHh
Confidence            344667778999999999988888776544443   45556 67889999999999999754221     1233455666


Q ss_pred             hcCCCChhHHHHHHHHHHHhhcCCCCCchh-----------------------hHHH---hhchHHHHHHHhccCCHHHH
Q 009647          229 MMLPNKGSTVRTAAWALSNLIKGPDPKPAT-----------------------ELIK---VDGLLDAILRHLKRADEELT  282 (530)
Q Consensus       229 lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~-----------------------~~v~---~~~~l~~L~~lL~~~d~~v~  282 (530)
                      +|.+-+.=-+..++.+|..-|+..-++|..                       .++.   ..-.+...-.+|.+.++.+.
T Consensus       225 ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV  304 (968)
T KOG1060|consen  225 LLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV  304 (968)
T ss_pred             hccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence            665432211222222333223322111100                       0000   11233444456778899999


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHH
Q 009647          283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV  362 (530)
Q Consensus       283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~  362 (530)
                      ..++.++++++-  ...     ...++..|+++|.  .+..++.-.|..+.-++...+.    +          +-|++-
T Consensus       305 mA~aql~y~lAP--~~~-----~~~i~kaLvrLLr--s~~~vqyvvL~nIa~~s~~~~~----l----------F~P~lK  361 (968)
T KOG1060|consen  305 MAVAQLFYHLAP--KNQ-----VTKIAKALVRLLR--SNREVQYVVLQNIATISIKRPT----L----------FEPHLK  361 (968)
T ss_pred             HHHHhHHHhhCC--HHH-----HHHHHHHHHHHHh--cCCcchhhhHHHHHHHHhcchh----h----------hhhhhh
Confidence            999999999995  222     2345788999885  4456778888888877744321    1          566666


Q ss_pred             HHh-ccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647          363 KCL-KSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  440 (530)
Q Consensus       363 ~lL-~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  440 (530)
                      .++ .+.|+ .++.--+.+|+||+..+  ++..     +++-+.....+.+..+...|+.+|+.++....          
T Consensus       362 sFfv~ssDp~~vk~lKleiLs~La~es--ni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----------  424 (968)
T KOG1060|consen  362 SFFVRSSDPTQVKILKLEILSNLANES--NISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----------  424 (968)
T ss_pred             ceEeecCCHHHHHHHHHHHHHHHhhhc--cHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----------
Confidence            665 34444 67777788999997543  2332     46677788888888888888889988875321          


Q ss_pred             HHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          441 EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       441 ~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                           =+..-|+..|+.+|.+.|..++..+.-.|..+++.
T Consensus       425 -----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  425 -----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             -----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence                 12334677788888888877777777777776654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.19  E-value=0.00026  Score=71.35  Aligned_cols=186  Identities=24%  Similarity=0.296  Sum_probs=142.6

Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      ..++.+++++.+ ++..++..+++.++.+...           -+++++..++.+.++.++..++.+|+.+-        
T Consensus        43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------  102 (335)
T COG1413          43 EAADELLKLLED-EDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--------  102 (335)
T ss_pred             hhHHHHHHHHcC-CCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence            367888899988 5899999999998877642           36889999999999999999999877663        


Q ss_pred             hhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc------------cc
Q 009647          258 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL------------QL  324 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~------------~v  324 (530)
                           ....+|.++.++. +++..++..+.++|..+-+.           ..+..++..+. ....            .+
T Consensus       103 -----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~-~~~~~~a~~~~~~~~~~~  165 (335)
T COG1413         103 -----DPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQ-DEDSGSAAAALDAALLDV  165 (335)
T ss_pred             -----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhc-cchhhhhhhhccchHHHH
Confidence                 1256778888888 58889999999999988752           12555666663 3221            23


Q ss_pred             hhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647          325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  404 (530)
Q Consensus       325 ~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li  404 (530)
                      +..+..+++.+-                 ....++.+...+.+....+|..|..+|+.+....         ..+.+.+.
T Consensus       166 r~~a~~~l~~~~-----------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~  219 (335)
T COG1413         166 RAAAAEALGELG-----------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLV  219 (335)
T ss_pred             HHHHHHHHHHcC-----------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHH
Confidence            445555555542                 2347888999999999999999999999997654         23567888


Q ss_pred             HHhcCCChhHHHHHHHHHHHhc
Q 009647          405 HLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       405 ~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      ..+.+.+..++..++.+|+.+-
T Consensus       220 ~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         220 KALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             HHhcCCCHHHHHHHHHHhcccC
Confidence            8899999999999999998874

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00058  Score=69.75  Aligned_cols=306  Identities=17%  Similarity=0.182  Sum_probs=182.6

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC---Cchh
Q 009647          137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE---GEEF  213 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d---~~~~  213 (530)
                      +.||.|-+-+...++..-++-.-|.=.--+.-+-+-...+-...+.|+..|++ ++.+|+..+=.+|+++-.+   +|..
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            34455554444445444445556654433332222222222478888999988 7889998887777665431   2221


Q ss_pred             HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHH-HHHHHHH---HH
Q 009647          214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE-LTTEVAW---VV  289 (530)
Q Consensus       214 r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~-v~~~a~~---~L  289 (530)
                         +--...++.++..+.++++.++..|..-+..+..-..+..   +...++++..++.++.+.++. +...+..   .+
T Consensus       246 ---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~---l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l  319 (675)
T KOG0212|consen  246 ---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL---LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL  319 (675)
T ss_pred             ---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch---hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence               1223468888999999999998766555555553321111   223467788888888766653 3322221   23


Q ss_pred             HHhhcCCchhHHHHHhc-CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC
Q 009647          290 VYLSALSNVATSLLVKS-GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE  368 (530)
Q Consensus       290 ~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~  368 (530)
                      ..+.. .....+. ++- .++..+..++ .++..+.+..++.-+.-+-...+.+.-...       ..+.+.|..-|++.
T Consensus       320 ~~l~s-~~~~~~~-id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-------~~if~tLL~tLsd~  389 (675)
T KOG0212|consen  320 LKLVS-SERLKEE-IDYGSIIEVLTKYL-SDDREETRIAVLNWIILLYHKAPGQLLVHN-------DSIFLTLLKTLSDR  389 (675)
T ss_pred             HHHHh-hhhhccc-cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhCcchhhhhc-------cHHHHHHHHhhcCc
Confidence            33332 1111111 332 3556677777 477788888888888888776666654443       46899999999999


Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                      +..|...+...+++||......  ..  -.++..|++++.....-+...+...+..+|.-                 +--
T Consensus       390 sd~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l-----------------L~a  448 (675)
T KOG0212|consen  390 SDEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL-----------------LNA  448 (675)
T ss_pred             hhHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH-----------------hCH
Confidence            9999999999999998764321  01  11344555555555555666777777766642                 112


Q ss_pred             cCChHHHHhhhcc-CCHHHHHHHHHHHHHHHcc
Q 009647          449 RGCLSGFIDLVRS-ADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       449 ~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~  480 (530)
                      ..+...+..+|.. +|.+....-.++|..++-.
T Consensus       449 E~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlT  481 (675)
T KOG0212|consen  449 ERIYRSIADILEREENLKFASTMVQALNTILLT  481 (675)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHhhhcc
Confidence            2345667777765 4556666666777777643

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=0.0019  Score=67.12  Aligned_cols=298  Identities=18%  Similarity=0.161  Sum_probs=183.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHH-HHHHHHHHhc-CChhhHHhhcCC
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAA-GKQEETKALLPA  179 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~e-A~~~L~nia~-~~~~~~~~i~~~  179 (530)
                      .+.+++...+..|...+..+..   +..+....+.+.+..|...+....+. ..+| ++.+...... -.+...-.++..
T Consensus       142 ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~~-~~re~~~~a~~~~~~~Lg~~~EPyiv~~  217 (569)
T KOG1242|consen  142 LLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKSA-LNREAALLAFEAAQGNLGPPFEPYIVPI  217 (569)
T ss_pred             HhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccchh-hcHHHHHHHHHHHHHhcCCCCCchHHhh
Confidence            3457788888888888887742   34556666788888888888754432 3344 2222222221 112233344467


Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      +|.++.-..+ ....||+.|..+...+..--+...    -.-.+|+++.-+.........+++..++.+.... |.. .+
T Consensus       218 lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~q-Ls  290 (569)
T KOG1242|consen  218 LPSILTNFGD-KINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQ-LS  290 (569)
T ss_pred             HHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHH-HH
Confidence            7777777766 567888888877766553211111    1113444444443335566778888888887653 332 22


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      . ....++|.+...|.+..++++..+..++..++.- ++..++     -.+|.|++.+. +++- -...++..|+.-..-
T Consensus       291 ~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~-dp~~-~~~e~~~~L~~ttFV  362 (569)
T KOG1242|consen  291 L-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALA-DPSC-YTPECLDSLGATTFV  362 (569)
T ss_pred             H-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhc-Cccc-chHHHHHhhcceeee
Confidence            2 2478999999999999999999999999988862 111222     24677888773 3321 234556666543221


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--HHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~--~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      ....... +       .-.+|.|.+-+...+..+++.++.++.|++.--  +..+...+.. ++|-|-..+.+..+++|.
T Consensus       363 ~~V~~ps-L-------almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~  433 (569)
T KOG1242|consen  363 AEVDAPS-L-------ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRA  433 (569)
T ss_pred             eeecchh-H-------HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHH
Confidence            1111100 1       114455555555567789999999999998753  4444444432 677777777788999999


Q ss_pred             HHHHHHHHhcC
Q 009647          417 EVAYVLGNLCV  427 (530)
Q Consensus       417 eA~~aL~nl~~  427 (530)
                      .|+.+|+-+..
T Consensus       434 vaarAL~~l~e  444 (569)
T KOG1242|consen  434 VAARALGALLE  444 (569)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.00014  Score=74.03  Aligned_cols=381  Identities=15%  Similarity=0.137  Sum_probs=213.0

Q ss_pred             CCCCHHHHHHHHHHHHHH---HcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC-C
Q 009647          104 GKGAMQKRVNALRELRRL---LSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-A  179 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~l---ls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~-~  179 (530)
                      .+++...+..++..+...   |..+..     -.-.+++|+.+.++...+ ..+++.|+..|.|++..-.......++ +
T Consensus        53 ~s~~~n~rkGgLiGlAA~~iaLg~~~~-----~Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v~~~Fn~i  126 (675)
T KOG0212|consen   53 YSPHANMRKGGLIGLAAVAIALGIKDA-----GYLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEVLVYFNEI  126 (675)
T ss_pred             cCcccccccchHHHHHHHHHHhccccH-----HHHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCcccchHHH
Confidence            455554444555555444   332221     134788999999998655 346677999999988432211111122 3


Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH-HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN-VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ...+.++..+ ++..|+. ++..+-.+..|-..-++ .+--.+.||.|-.-+...++..+...+.-+.-|-.-    |..
T Consensus       127 FdvL~klsaD-sd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~----P~~  200 (675)
T KOG0212|consen  127 FDVLCKLSAD-SDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV----PDL  200 (675)
T ss_pred             HHHHHHHhcC-Ccccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC----CcH
Confidence            3444454444 4444433 33333333222111111 111122344444444455777777666556655432    234


Q ss_pred             hHHH-hhchHHHHHHHhccCCHHHHHHHHHHHHHhhc---CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhh
Q 009647          259 ELIK-VDGLLDAILRHLKRADEELTTEVAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN  334 (530)
Q Consensus       259 ~~v~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~---~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~n  334 (530)
                      +++. ...+++.|..+|.++.++|+.-+-.+++....   ++++..   --...++.++..+ .++++.++..|+.-|..
T Consensus       201 ~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~e  276 (675)
T KOG0212|consen  201 EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHL-QSSEPEIQLKALTWIQE  276 (675)
T ss_pred             HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---Ccccchhhccccc-cCCcHHHHHHHHHHHHH
Confidence            4432 34677778888999999998777666655542   122221   1134667777777 47888888888888888


Q ss_pred             hhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh-HHHHHHHH---HHHHhcCCHHHHHHHHhC-CcHHHHHHHhcC
Q 009647          335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWV---LSNIAAGSVEHKQLIHSS-EALALLLHLLST  409 (530)
Q Consensus       335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~-i~~~A~~~---Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~  409 (530)
                      ++.-.....-..       -.|++..+.+++.+..+. ++..|.-+   +..+.. ++...+. ++. .++..|...+.+
T Consensus       277 fV~i~g~~~l~~-------~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~  347 (675)
T KOG0212|consen  277 FVKIPGRDLLLY-------LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSD  347 (675)
T ss_pred             HhcCCCcchhhh-------hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhc
Confidence            876554433222       246778888888776653 44433322   222222 1111111 343 357778888899


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchh-
Q 009647          410 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK-  488 (530)
Q Consensus       410 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~-  488 (530)
                      +..+.|-.+..-+..+-...      |+++     ......+.+.|..-|...+.+++..+|..+.+|+.......+++ 
T Consensus       348 ~~~~tri~~L~Wi~~l~~~~------p~ql-----~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~f  416 (675)
T KOG0212|consen  348 DREETRIAVLNWIILLYHKA------PGQL-----LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKF  416 (675)
T ss_pred             chHHHHHHHHHHHHHHHhhC------cchh-----hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence            99999988887777775432      2221     22245677888888999999999999999999986543311111 


Q ss_pred             ------------HHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHh
Q 009647          489 ------------LVEREDGIDAMERFQF-HENEDLRNMANGLVDK  520 (530)
Q Consensus       489 ------------~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~  520 (530)
                                  .+-+.-|-=.|.+|.. -+.+.||+--..||++
T Consensus       417 l~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~  461 (675)
T KOG0212|consen  417 LLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER  461 (675)
T ss_pred             HHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence                        1112222223333322 2445677777777775

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.10  E-value=0.00091  Score=67.73  Aligned_cols=239  Identities=17%  Similarity=0.156  Sum_probs=171.5

Q ss_pred             hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcCCccc
Q 009647          264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      ....+.+..++-+++.+++..+..++.|+.. +.+..+.+.+.++--.++.-|.... +..=++.|++.+..+.......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            4455666655656669999999999999997 5567788888887777777775332 2233568999998888653221


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                       +. +      ..+++..++.+..+.+...+..|..+|.-++-.+|+   .+..+|++..|++.+.++..++....+.++
T Consensus       103 -~~-~------~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l  171 (371)
T PF14664_consen  103 -KE-I------PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTL  171 (371)
T ss_pred             -cc-C------CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence             11 1      357999999999999999999999999999887765   466899999999999888778888899999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHHHhc----CChHHHHhhh---ccCCH--HHHHHHHHHHHHHHccCCCCcchhHHHHh
Q 009647          423 GNLCVSPTEGEGKPKLIQEHLVSLVGR----GCLSGFIDLV---RSADI--EAARLGLQFMELVLRGMPNHEGTKLVERE  493 (530)
Q Consensus       423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~----g~i~~L~~lL---~~~d~--~i~~~~L~~L~~il~~~~~~~~~~~i~~~  493 (530)
                      ..+...+.           ..+++...    -++.++.+.-   ..++.  +-...+-.++..+|+.++. -........
T Consensus       172 L~lLd~p~-----------tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~~~~  239 (371)
T PF14664_consen  172 LYLLDSPR-----------TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSMNDF  239 (371)
T ss_pred             HHHhCCcc-----------hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeecCCc
Confidence            99987542           23444432    2345555541   11233  3566777888888887653 112222344


Q ss_pred             chHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCC
Q 009647          494 DGIDAMERFQFHENEDLRNMANGLVDKYFGEDY  526 (530)
Q Consensus       494 ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~  526 (530)
                      .|+..|......+++++++....++-..|.-..
T Consensus       240 ~~lksLv~~L~~p~~~ir~~Ildll~dllrik~  272 (371)
T PF14664_consen  240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP  272 (371)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence            688888888889999999999988888776543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.08  E-value=7.9e-06  Score=58.51  Aligned_cols=55  Identities=33%  Similarity=0.496  Sum_probs=48.1

Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647          370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  425 (530)
Q Consensus       370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl  425 (530)
                      +.+|..|+|+|++++.+.++..+.... .++|.|+.+|.+++..||..|+|+|+||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998888777776544 4899999999999999999999999985

...

>PF05536 Neurochondrin: Neurochondrin

Probab=98.07  E-value=0.0003  Score=74.89  Aligned_cols=233  Identities=15%  Similarity=0.101  Sum_probs=161.6

Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch---hHHHHHhcCChhhhHhhcCC-------CChhHHHHHHHHHHHhh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE---FRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLI  249 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~---~r~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~  249 (530)
                      +...+.+|++ .+.+=+-.++-.+.+++..++.   .+..+.+.=+.+.|-++|.+       +....+.-++-.|+.+|
T Consensus         7 l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    7 LEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4556677777 4456677777888888875553   23457777677888899986       23577888888999999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhccCCH-HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          250 KGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       250 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      +.++-....++   -+-+|.|+..+...+. ++..+++.+|..++ .+++..+.+++.|+++.|++.+. + .+.....|
T Consensus        86 ~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~-~-~~~~~E~A  159 (543)
T PF05536_consen   86 RDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP-N-QSFQMEIA  159 (543)
T ss_pred             CChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH-h-CcchHHHH
Confidence            85332222332   3789999999987777 99999999999999 58888999999999999999985 3 55667899


Q ss_pred             HHHHhhhhcCCccc-----cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHH-HHHHH----hCC
Q 009647          329 LRSLGNLVAGDSST-----ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIH----SSE  398 (530)
Q Consensus       329 l~~L~nl~~~~~~~-----~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~-~~~li----~~~  398 (530)
                      +.++.+++......     .+.+        ..+++.+...+...+...+-++|..|+++-...+.. ....-    -..
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l--------~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~  231 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLL--------HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD  231 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHH--------HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence            99999998765421     1111        246677777777666677889999999987765211 11111    112


Q ss_pred             cHHHHHHHhcCC-ChhHHHHHHHHHHHhcC
Q 009647          399 ALALLLHLLSTS-PFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       399 ~l~~Li~lL~~~-~~~v~~eA~~aL~nl~~  427 (530)
                      +..-+..+|++. .+.-|..|..+.+.+..
T Consensus       232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  232 LRKGLRDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            455566677654 34555556555555543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0041  Score=66.09  Aligned_cols=287  Identities=13%  Similarity=0.114  Sum_probs=184.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  173 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~  173 (530)
                      .+|++++.   |+.....++|++.+..++.++.+.       +...|..|.-..+.+ .++++-..-.|...|..+++..
T Consensus        38 ~dL~~lLd---Snkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA  106 (968)
T KOG1060|consen   38 DDLKQLLD---SNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA  106 (968)
T ss_pred             HHHHHHHh---ccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce
Confidence            57777775   888889999999999998888763       346788888887665 5676666667777776554322


Q ss_pred             HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                         +=-|..|-+-|.+ +++.+|-.|+.+|+.|=.       -++.-=++-.+-++..++.+.+++.|+.++-.|.+-+ 
T Consensus       107 ---LLSIntfQk~L~D-pN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-  174 (968)
T KOG1060|consen  107 ---LLSINTFQKALKD-PNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-  174 (968)
T ss_pred             ---eeeHHHHHhhhcC-CcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-
Confidence               1256777788888 899999988888886543       1221111222334455678999999999999998754 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                      +..      ....+..+-.||.+.++-|.-.|..++-.+|-   ++.+.+  ++-..++.++|. .-+..-+.-++..|-
T Consensus       175 ~e~------k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~-dvdeWgQvvlI~mL~  242 (968)
T KOG1060|consen  175 PEQ------KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLP-DVDEWGQVVLINMLT  242 (968)
T ss_pred             hhh------HHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhcc-chhhhhHHHHHHHHH
Confidence            221      23556677788888899999999999888874   444444  234556666553 333333444444444


Q ss_pred             hhhcCC---c----------------------cccchhcccCCCcch-hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647          334 NLVAGD---S----------------------STISDVLVPGHGITD-QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       334 nl~~~~---~----------------------~~~~~~i~~g~~~~~-~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~  387 (530)
                      ..+...   +                      .++-.+.+.    +. -++...-.+|.+.++.|...+|.+...++-..
T Consensus       243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~----D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~  318 (968)
T KOG1060|consen  243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP----DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN  318 (968)
T ss_pred             HHHHhcCCCccccccccccCcccccccccccccCCCcccCc----cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence            433211   0                      000011110    11 14566677888889999999999998886433


Q ss_pred             HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                        +..     .++.+|+++|.+.. .+|.-.+..|..++.
T Consensus       319 --~~~-----~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  319 --QVT-----KIAKALVRLLRSNR-EVQYVVLQNIATISI  350 (968)
T ss_pred             --HHH-----HHHHHHHHHHhcCC-cchhhhHHHHHHHHh
Confidence              222     35678999886654 455555555555543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.012  Score=61.92  Aligned_cols=301  Identities=14%  Similarity=0.169  Sum_probs=179.5

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      .+-+=|.+ .++....-|+.+++|+-+  -+++..+..  -|+   ++|-++  ..-++..++.||..|.+.. |    +
T Consensus       115 ~iknDL~s-rn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-p----D  181 (938)
T KOG1077|consen  115 SIKNDLSS-RNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-P----D  181 (938)
T ss_pred             HHHhhhhc-CCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-c----c
Confidence            33344444 567788889999999875  344443332  133   555554  3567888999999998752 3    3


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh------------cCCCccchhh
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA------------TSNSLQLLIP  327 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~------------~~~~~~v~~~  327 (530)
                      .+...+....++.+|.+.+-.+...+...+-.|+...++....-+- -.+..|.+...            .-+.|.+...
T Consensus       182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence            4445688999999999888888888888888888755543321110 11222222211            1255777888


Q ss_pred             hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc----Cc---HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcH
Q 009647          328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----EH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL  400 (530)
Q Consensus       328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~~---~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l  400 (530)
                      ++|.|.+.-...|.-+..-+       ..++..++...+.    .+   ...+...++-.-+++.+-+..-+.+..  .+
T Consensus       261 l~rlLq~~p~~~D~~~r~~l-------~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~  331 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTRARL-------NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AV  331 (938)
T ss_pred             HHHHHHhCCCCCCchHHHHH-------HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HH
Confidence            99999988555444333221       1244444443331    11   122333334444554443222233333  46


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHc
Q 009647          401 ALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLR  479 (530)
Q Consensus       401 ~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~  479 (530)
                      ..|-++|.+.+..+|.-|...++.++...            .....+... ...++..|+ ..|..+++.+++.|+.++.
T Consensus       332 ~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------------~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD  398 (938)
T KOG1077|consen  332 NQLGQFLSHRETNIRYLALESMCKLASSE------------FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCD  398 (938)
T ss_pred             HHHHHHhhcccccchhhhHHHHHHHHhcc------------chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            67888999999999999999999998642            111222222 567788888 6899999999999999985


Q ss_pred             cCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          480 GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       480 ~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      .    .+.+.|. .+-++.|+..-..--+++.-++.-+=|+|-.
T Consensus       399 ~----~Nak~IV-~elLqYL~tAd~sireeivlKvAILaEKyAt  437 (938)
T KOG1077|consen  399 V----SNAKQIV-AELLQYLETADYSIREEIVLKVAILAEKYAT  437 (938)
T ss_pred             h----hhHHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence            3    2333332 2334444433333345666666666666643

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.0016  Score=61.98  Aligned_cols=294  Identities=17%  Similarity=0.188  Sum_probs=173.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH-hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL-SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      ..++.+|.+ .++.|+..|+..+.++.+.  ..+...- +.-.++.+.+++...++  .+.|+.+|.|++...   ..++
T Consensus         6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~---~l~~   77 (353)
T KOG2973|consen    6 VELVELLHS-LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE---ELRK   77 (353)
T ss_pred             HHHHHHhcc-CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH---HHHH
Confidence            356788877 7899999999999998874  2222211 23457778888887666  788999999999753   2233


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-----CchHHHHHHHhcCCCc--cchhhhHHHH
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS-----GVLQLLVERLATSNSL--QLLIPVLRSL  332 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-----g~l~~Lv~lL~~~~~~--~v~~~al~~L  332 (530)
                      .+.. .++..++..+.++.......+|..|+|++..++.....+...     ..+..++..+.+++..  .-.......+
T Consensus        78 ~ll~-~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   78 KLLQ-DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHH-HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            3332 377777777777767788889999999998554433333211     2333444433322211  1122344455


Q ss_pred             hhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH-HHHHHHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCC
Q 009647          333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK-KEAAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTS  410 (530)
Q Consensus       333 ~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~-~~A~~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~  410 (530)
                      +||+...... ..+++.    +.-....+..+-+ .+..+| ...+.+|-|++.....+-..+-. .+++|.++-=+-.+
T Consensus       157 ~nls~~~~gR-~l~~~~----k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp  230 (353)
T KOG2973|consen  157 ANLSQFEAGR-KLLLEP----KRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP  230 (353)
T ss_pred             HHHhhhhhhh-hHhcch----hhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc
Confidence            5555443221 112211    0012333444444 455555 45678999998876544433322 24556554444332


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-----cCCHHHHHHHHHHHHHHHccCCCCc
Q 009647          411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-----SADIEAARLGLQFMELVLRGMPNHE  485 (530)
Q Consensus       411 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-----~~d~~i~~~~L~~L~~il~~~~~~~  485 (530)
                      + +.-.+                        ...      -+|.=+++|.     .+|+.++...+++|..++..   ..
T Consensus       231 e-e~sEE------------------------dm~------~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT---~~  276 (353)
T KOG2973|consen  231 E-ELSEE------------------------DMA------KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT---RA  276 (353)
T ss_pred             c-ccCHH------------------------HHh------cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---hH
Confidence            2 11100                        000      1122223443     46889999999999888743   24


Q ss_pred             chhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcC
Q 009647          486 GTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       486 ~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~f~  523 (530)
                      ++..+..-|+-..+..|-. .+++++.+.+..+.+-.-.
T Consensus       277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            6788888999999988754 4688898888777666555

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.04  E-value=0.0021  Score=64.84  Aligned_cols=249  Identities=26%  Similarity=0.282  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .++.+.+.+.   +.+...+..|...+..+   +         ..-.+|.+..+|...+ +.++..|+.+|.++-...  
T Consensus        44 ~~~~~~~~l~---~~~~~vr~~aa~~l~~~---~---------~~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~~--  105 (335)
T COG1413          44 AADELLKLLE---DEDLLVRLSAAVALGEL---G---------SEEAVPLLRELLSDED-PRVRDAAADALGELGDPE--  105 (335)
T ss_pred             hHHHHHHHHc---CCCHHHHHHHHHHHhhh---c---------hHHHHHHHHHHhcCCC-HHHHHHHHHHHHccCChh--
Confidence            3455555554   66788888888875443   1         1237899999998766 456667888776665321  


Q ss_pred             hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCCh------------hHHH
Q 009647          172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG------------STVR  239 (530)
Q Consensus       172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~------------~~~~  239 (530)
                             ++|.|+.+|...++..++..|+|+|+.+-..           ..+.+++..+++...            .++.
T Consensus       106 -------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         106 -------AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             -------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                   6889999998557899999999999997642           237788888876542            2334


Q ss_pred             HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC
Q 009647          240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS  319 (530)
Q Consensus       240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~  319 (530)
                      .+.-.|+.+-             ....++.+...+...+..++..+..+|..+....         ..+.+.+...+ ..
T Consensus       168 ~a~~~l~~~~-------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~-~~  224 (335)
T COG1413         168 AAAEALGELG-------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKAL-SD  224 (335)
T ss_pred             HHHHHHHHcC-------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHh-cC
Confidence            4444443332             2345677788888888889999999988888633         23445566666 57


Q ss_pred             CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 009647          320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA  399 (530)
Q Consensus       320 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~  399 (530)
                      .+..++..++.++|.+-..                 ..++.+...+...+..++..+...+...  ..         ...
T Consensus       225 ~~~~vr~~~~~~l~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~---------~~~  276 (335)
T COG1413         225 ESLEVRKAALLALGEIGDE-----------------EAVDALAKALEDEDVILALLAAAALGAL--DL---------AEA  276 (335)
T ss_pred             CCHHHHHHHHHHhcccCcc-----------------hhHHHHHHHHhccchHHHHHHHHHhccc--Cc---------hhh
Confidence            7788888888888876422                 3667778888877776666655555411  11         113


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          400 LALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      ...+...+.+....++.++++++.-+..
T Consensus       277 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         277 ALPLLLLLIDEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence            4566677777777888888888766643

>PF05536 Neurochondrin: Neurochondrin

Probab=98.04  E-value=0.00033  Score=74.58  Aligned_cols=241  Identities=20%  Similarity=0.183  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcH--HHHHHcCCHHHHHHHhcCCC-----ChHHHH-HHHHHHH
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFGS-----PDEQLL-EAAWCLT  163 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~--~~ii~~g~v~~Lv~lL~~~~-----~~~~~~-eA~~~L~  163 (530)
                      .+++..++++   +.+.+.++.++-.+.+++...+....  ..+.++=+.+-+-++|.+..     ++..-. -|..+|+
T Consensus         6 ~l~~c~~lL~---~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    6 SLEKCLSLLK---SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            4566666665   77788999999999999875543222  24667666777888887632     222223 3888888


Q ss_pred             HHhcCChhh-HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHH
Q 009647          164 NIAAGKQEE-TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAA  242 (530)
Q Consensus       164 nia~~~~~~-~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~  242 (530)
                      .++....-. -..+++.||.|++.+.++++..+...|..+|..|+. +++.+..+++.|+++.|+..+.+ .+...+.+.
T Consensus        83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            888743221 234558999999999885555899999999999995 88999999999999999999877 556677888


Q ss_pred             HHHHHhhcCCCCCchhh-HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh-HHHHHh----cCchHHHHHHH
Q 009647          243 WALSNLIKGPDPKPATE-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVK----SGVLQLLVERL  316 (530)
Q Consensus       243 ~~L~nL~~~~~~~~~~~-~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~i~~----~g~l~~Lv~lL  316 (530)
                      ..+.+++.....+...+ .-....+++.+...+...........|..|..+-...+.. ......    ..+...+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            88888775432211111 0012355666777776666677778888888887644211 111111    12334455555


Q ss_pred             hcCCCccchhhhHHHHhhhhc
Q 009647          317 ATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       317 ~~~~~~~v~~~al~~L~nl~~  337 (530)
                      .+...+.-+.+++...+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            444456667777777777763

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.0081  Score=57.71  Aligned_cols=315  Identities=15%  Similarity=0.137  Sum_probs=195.3

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCCCC---cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFEFP---PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL  177 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~---~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~  177 (530)
                      .++..+|..++.-+++.+-.++...+..   .+..++++|+.|.++.++...+ +++-..|...+..|+... .....++
T Consensus        89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfp-aaleaiF  166 (524)
T KOG4413|consen   89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFP-AALEAIF  166 (524)
T ss_pred             hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcH-HHHHHhc
Confidence            3566788888999999988888755433   3345668999999999998665 556566788888888543 3444444


Q ss_pred             C--CcH--HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCC
Q 009647          178 P--ALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       178 ~--~v~--~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~  252 (530)
                      .  ...  .+..+-.. -+.-+|......+-.|.+-+++....+-.+|.+..|..-++. .|.-++.++.-....|+.-.
T Consensus       167 eSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete  245 (524)
T KOG4413|consen  167 ESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE  245 (524)
T ss_pred             ccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh
Confidence            1  211  12222222 234566667777778887788888999999999999988886 57778888888888888643


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHH-------HHHHHhcCCCcc
Q 009647          253 DPKPATELIKVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQL-------LVERLATSNSLQ  323 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~-------Lv~lL~~~~~~~  323 (530)
                      .   .++++...|.+..+..++.-.|  |--...++.....+..  .+.+-.+.....+..       ..+.+ ..+++.
T Consensus       246 H---greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmi-EmnDpd  319 (524)
T KOG4413|consen  246 H---GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPD  319 (524)
T ss_pred             h---hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCch
Confidence            2   2456667899999999987443  3222223333333321  111211112222222       23333 467888


Q ss_pred             chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHH-HHHhccCcHhHHHHHHHHHHHHhcC---CHHHH--------
Q 009647          324 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL-VKCLKSEHRVLKKEAAWVLSNIAAG---SVEHK--------  391 (530)
Q Consensus       324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L-~~lL~~~~~~i~~~A~~~Lsnl~~~---~~~~~--------  391 (530)
                      .+..|+.++|-+-+.. +-.+.++..|    ......+ .+....+...-+..++.+|.||+..   .++++        
T Consensus       320 aieaAiDalGilGSnt-eGadlllkTg----ppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeer  394 (524)
T KOG4413|consen  320 AIEAAIDALGILGSNT-EGADLLLKTG----PPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER  394 (524)
T ss_pred             HHHHHHHHHHhccCCc-chhHHHhccC----ChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence            8899999999876543 3444555433    1123333 3333333334567778888888753   22221        


Q ss_pred             -H-HHHhC-------CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647          392 -Q-LIHSS-------EALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       392 -~-~li~~-------~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                       . .+.++       .-+.....+++-+.++++..|..++..++..+
T Consensus       395 lrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  395 LRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             HHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc
Confidence             1 12221       12344556677788999999999999998754

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.00  E-value=2.6e-05  Score=64.84  Aligned_cols=131  Identities=17%  Similarity=0.090  Sum_probs=106.8

Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      +..|+.-.....+.+-+++..--|.|.|-| |.+-..+.+..++..++..|..++..+++.++..|+|+|-.+   ...+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~---~n~~   93 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK---TNAK   93 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh---HHHH
Confidence            334444444457889999999999999985 677788999999999999999999999999999999999653   3455


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE  314 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~  314 (530)
                      .|.+.+++|.++..+.++.+.+...++.++.+|+.+.......+....++..+.+
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            7778999999999999999999999999999999876666666665555544443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0023  Score=69.67  Aligned_cols=328  Identities=15%  Similarity=0.164  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcHHHHH-----HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHH
Q 009647          109 QKRVNALRELRRLLSRFEFPPIETAL-----KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL  182 (530)
Q Consensus       109 ~~~~~a~~~lr~lls~~~~~~~~~ii-----~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~  182 (530)
                      +...-++.+|+++++..++  ...++     =-|..|.+..+|.....+.+|.-|..++..+.+..+-.....- +.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~nPd--lasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPD--LASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcc--hhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence            3456688999999876542  22222     2478888888888655566777777777766665543333333 57788


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCC--CCCchhh
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGP--DPKPATE  259 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~--~~~~~~~  259 (530)
                      |+.+|.+  .+..++.++..|..+++ +++.-...+++|++..+..++. +.++..+.+++-.|..|...+  .|+....
T Consensus      1818 LL~lLHS--~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1818 LLTLLHS--QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred             HHHHHhc--ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence            8888865  57899999999999998 6788888999999999988776 456778888888999987543  2332211


Q ss_pred             HHHhhchHH------------HHHHHhc--cCCHHH------HHHHHHHHHHhhc--------CC------chh------
Q 009647          260 LIKVDGLLD------------AILRHLK--RADEEL------TTEVAWVVVYLSA--------LS------NVA------  299 (530)
Q Consensus       260 ~v~~~~~l~------------~L~~lL~--~~d~~v------~~~a~~~L~~L~~--------~~------~~~------  299 (530)
                      .   -.++|            ..++.+.  +++|++      +......+..+..        ++      ++.      
T Consensus      1895 L---~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1895 L---IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred             h---HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence            1   12333            2333333  223321      1111122222210        00      000      


Q ss_pred             ------------HHHHH------------hcCchHHHHHHHhcCCCcc--chhhhHHHHhhhhcCCccccchhcccCCCc
Q 009647          300 ------------TSLLV------------KSGVLQLLVERLATSNSLQ--LLIPVLRSLGNLVAGDSSTISDVLVPGHGI  353 (530)
Q Consensus       300 ------------~~~i~------------~~g~l~~Lv~lL~~~~~~~--v~~~al~~L~nl~~~~~~~~~~~i~~g~~~  353 (530)
                                  ...+.            -.|++.++.+++. .++++  ...-.-.++-.+....+...+.+=      
T Consensus      1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~-~~~peqh~l~lLt~A~V~L~r~hP~LADqip------ 2044 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMS-RPTPEQHELDLLTKAFVELVRHHPNLADQLP------ 2044 (2235)
T ss_pred             hccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhc-CCCcccchhHHHHHHHHHHHHhCcchhhhCC------
Confidence                        00010            1233444455553 22221  222222333334444444444443      


Q ss_pred             chhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCC
Q 009647          354 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE  433 (530)
Q Consensus       354 ~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~  433 (530)
                      ..|.+|.++..+.+.+..+-+.|+.+|..++... -.+.++.....+..++..+...- +.---|+.+|..+.....   
T Consensus      2045 ~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~--- 2119 (2235)
T KOG1789|consen 2045 SLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNT--- 2119 (2235)
T ss_pred             CccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhH---
Confidence            2479999999999888888899999999997743 55666666666777888776543 233367788877765321   


Q ss_pred             CCchhHHHHHHHHHhcCChHHHHhhhccC
Q 009647          434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSA  462 (530)
Q Consensus       434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~  462 (530)
                            .+-+....+.|.++.|+.+|++.
T Consensus      2120 ------~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2120 ------GELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             ------HHHHHHHhccCcHHHHHHHhccc
Confidence                  24566777899999999999863

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=0.0024  Score=66.39  Aligned_cols=342  Identities=15%  Similarity=0.086  Sum_probs=207.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647           97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL  176 (530)
Q Consensus        97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i  176 (530)
                      ..++..+..+.+..|.....+++.+.......+.     .-+.+.+.++++.+.. .-+..|++.+.-+..|.......-
T Consensus        99 ~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~~-~~~~~aa~~~ag~v~g~~i~~~~~  172 (569)
T KOG1242|consen   99 EILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTKI-AERAGAAYGLAGLVNGLGIESLKE  172 (569)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhccccH-HHHhhhhHHHHHHHcCcHHhhhhh
Confidence            3345555677788888888888888655444433     2345778888886553 345779999999988765443333


Q ss_pred             cCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc---CCCChhHHHHHHHHHHHhhcCCC
Q 009647          177 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM---LPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       177 ~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      .+.+..+.+...+..+..-++.+..+.-..++.-.    ...+.++++.+-.++   .+....+++.+..+...+.+.-+
T Consensus       173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            35666666666653333334323222222221110    112333444444444   45578888888888877775532


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                      +.    .  ...++|.++.-+....-.....++..|+.++...+.... ..-..++|.+.+.|. ...++++..+..++-
T Consensus       249 ~~----a--VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~-DT~~evr~a~~~~l~  320 (569)
T KOG1242|consen  249 AY----A--VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLW-DTKPEVRKAGIETLL  320 (569)
T ss_pred             cc----h--hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHc-cCCHHHHHHHHHHHH
Confidence            22    1  345666666555544445566666677777664444443 344679999999995 678899999888888


Q ss_pred             hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhcCC
Q 009647          334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTS  410 (530)
Q Consensus       334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~~~l~~Li~lL~~~  410 (530)
                      +++.--+.--   |+       ..+|.|+..+.++...+ .++...|+.-+.-   .+.-..     =++|.|.+-+...
T Consensus       321 ~~~svidN~d---I~-------~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eR  384 (569)
T KOG1242|consen  321 KFGSVIDNPD---IQ-------KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAER  384 (569)
T ss_pred             HHHHhhccHH---HH-------HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhc
Confidence            8875433221   21       47889999998876332 3344444432221   111111     1456666777778


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       411 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      +..+++.++.++.|+|.--+    .|   .+-..++-  .++|.|-..+...+|+++..+..+|..+++..
T Consensus       385 st~~kr~t~~IidNm~~Lve----Dp---~~lapfl~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  385 STSIKRKTAIIIDNMCKLVE----DP---KDLAPFLP--SLLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             cchhhhhHHHHHHHHHHhhc----CH---HHHhhhHH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            88899999999999986321    12   11222221  25666666677778999999999998887643

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0018  Score=68.37  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=87.7

Q ss_pred             hhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647          356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  434 (530)
Q Consensus       356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  434 (530)
                      |.+--++++|++++-++|+.+.-..-.|+.+ +-+.+-.++...+...--. =+....+.|..-..+|..++..      
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~------  389 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVK------  389 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhc------
Confidence            4555567788888889999888877777654 3232222222111110000 0111223456666666665542      


Q ss_pred             CchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHH
Q 009647          435 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNM  513 (530)
Q Consensus       435 ~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~  513 (530)
                      .|    +     +...+++.|++.+.+.++..-..+|.++...++..++  .+..     .++ .++.+-.-....+++-
T Consensus       390 Fp----~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~-----ii~~l~~~~~~irS~ki~rg  453 (948)
T KOG1058|consen  390 FP----E-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRAS-----IIEKLLETFPQIRSSKICRG  453 (948)
T ss_pred             Ch----H-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHH-----HHHHHHHhhhhhcccccchh
Confidence            11    1     1345788999999999998888888888888766553  1211     122 1233333456678999


Q ss_pred             HHHHHHhhcCCCC
Q 009647          514 ANGLVDKYFGEDY  526 (530)
Q Consensus       514 A~~il~~~f~~~~  526 (530)
                      |.+|+-.|...+.
T Consensus       454 alwi~GeYce~~~  466 (948)
T KOG1058|consen  454 ALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHHhhhH
Confidence            9999999987655

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.93  E-value=2.9e-05  Score=61.49  Aligned_cols=87  Identities=28%  Similarity=0.407  Sum_probs=70.5

Q ss_pred             hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH
Q 009647          309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  388 (530)
Q Consensus       309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~  388 (530)
                      ++.|++.|..++++.++..++++||++-                 ...+++.|..++.++++.||..|+++|+.+-  + 
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~-   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------------DPEAIPALIELLKDEDPMVRRAAARALGRIG--D-   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C-
Confidence            4678888866889999999999999542                 2358999999999999999999999999882  2 


Q ss_pred             HHHHHHHhCCcHHHHHHHhcCC-ChhHHHHHHHHHH
Q 009647          389 EHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLG  423 (530)
Q Consensus       389 ~~~~~li~~~~l~~Li~lL~~~-~~~v~~eA~~aL~  423 (530)
                              ...++.|.+++.++ +..++..|+++|+
T Consensus        61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 --------PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                    23788999988765 5567999999885

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.0042  Score=67.83  Aligned_cols=327  Identities=13%  Similarity=0.101  Sum_probs=209.0

Q ss_pred             HHHHHHHHhcCChh------hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647          158 AAWCLTNIAAGKQE------ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  231 (530)
Q Consensus       158 A~~~L~nia~~~~~------~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~  231 (530)
                      +..+|.|+.+.+++      ....++|..+.++.+|....+++++..|+..+.-+.. +.++-..+...|.+..|+.+|.
T Consensus      1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred             HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHh
Confidence            88999999987773      2334457889999999887888999999998887776 6788899999998888888886


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCC----chhHHH----
Q 009647          232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALS----NVATSL----  302 (530)
Q Consensus       232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~----~~~~~~----  302 (530)
                      + .++.++-++-+|..|+..  ++...+.. ..|++..+..++- +..+..+..++..|..|....    ...+..    
T Consensus      1824 S-~PS~R~~vL~vLYAL~S~--~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSN--GQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred             c-ChHHHHHHHHHHHHHhcC--cHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence            4 568888899999999865  55656654 5788888887765 455788899999999887532    111111    


Q ss_pred             ------HHhcCchHHHHHHHhc-CCCccchh-hh-----HHHHhhhhcCC--ccccchhc------------------cc
Q 009647          303 ------LVKSGVLQLLVERLAT-SNSLQLLI-PV-----LRSLGNLVAGD--SSTISDVL------------------VP  349 (530)
Q Consensus       303 ------i~~~g~l~~Lv~lL~~-~~~~~v~~-~a-----l~~L~nl~~~~--~~~~~~~i------------------~~  349 (530)
                            .+..| -...|..+.. +.++++.. ++     -..+..++..-  ..|....+                  ..
T Consensus      1900 P~~f~d~~RD~-PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1900 PEIFADSLRDS-PEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred             hHHHHHHHhcC-HHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence                  11111 1444444432 33444332 11     12222222110  00100000                  00


Q ss_pred             CC------------------CcchhhHHHHHHHhccCcH--hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647          350 GH------------------GITDQVIAVLVKCLKSEHR--VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       350 g~------------------~~~~~~l~~L~~lL~~~~~--~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~  409 (530)
                      |.                  .+-.+.+..+..++...++  ..-.--..++-.+....+.....+-..|-+|.++..+..
T Consensus      1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred             chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence            00                  0234667777777765543  222222233344445566666777778999999999977


Q ss_pred             CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhH
Q 009647          410 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKL  489 (530)
Q Consensus       410 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~  489 (530)
                      .+..+-+.|+.+|-.++.+.           -.++.|....++.+++..+. +.+..+..++++|..++....+ .....
T Consensus      2059 ~n~s~P~SaiRVlH~Lsen~-----------~C~~AMA~l~~i~~~m~~mk-K~~~~~GLA~EalkR~~~r~~~-eLVAQ 2125 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQ-----------FCCDAMAQLPCIDGIMKSMK-KQPSLMGLAAEALKRLMKRNTG-ELVAQ 2125 (2235)
T ss_pred             cCCcCcHHHHHHHHHHhhcc-----------HHHHHHhccccchhhHHHHH-hcchHHHHHHHHHHHHHHHhHH-HHHHH
Confidence            76667788999999997642           35788888888888888776 3455666899999999864332 12223


Q ss_pred             HHHhchHHHHHHHh
Q 009647          490 VEREDGIDAMERFQ  503 (530)
Q Consensus       490 i~~~ggl~~L~~L~  503 (530)
                      .-.+|-++.|-.|.
T Consensus      2126 ~LK~gLvpyLL~LL 2139 (2235)
T KOG1789|consen 2126 MLKCGLVPYLLQLL 2139 (2235)
T ss_pred             HhccCcHHHHHHHh
Confidence            33567667665554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.0025  Score=61.09  Aligned_cols=305  Identities=15%  Similarity=0.128  Sum_probs=183.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      ++.++..+...|.++.-.|...+.++ +..+ .....++++.....+- .-|.-..++..+......+..|.+-+++...
T Consensus       130 lklildcIggeddeVAkAAiesikri-alfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan  207 (524)
T KOG4413|consen  130 LKLILDCIGGEDDEVAKAAIESIKRI-ALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN  207 (524)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHH-HhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence            34445555678888888888888887 3332 1224455555554322 1111112233344577888888888888777


Q ss_pred             hhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHH----HHHH
Q 009647          175 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAA----WALS  246 (530)
Q Consensus       175 ~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~----~~L~  246 (530)
                      .+-  |.+..|..-|....+.-|+-.|+.....++. .+..|+.+-+.|.|+.+.+.+...  ++--.--+.    ..++
T Consensus       208 eckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg  286 (524)
T KOG4413|consen  208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG  286 (524)
T ss_pred             HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence            776  6788888888776777888999999999886 567899999999999999998743  221111122    2333


Q ss_pred             HhhcCC-CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc--hHHHHHHHhcCCCcc
Q 009647          247 NLIKGP-DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQLLVERLATSNSLQ  323 (530)
Q Consensus       247 nL~~~~-~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~--l~~Lv~lL~~~~~~~  323 (530)
                      +..-.+ .++...+.  -.-++...+.++...|++.+..|.-+++.+-. +.+..+.+.++|-  ...++....+.+...
T Consensus       287 keaimdvseeaicea--liiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnaha  363 (524)
T KOG4413|consen  287 KEAIMDVSEEAICEA--LIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHA  363 (524)
T ss_pred             chHHhhcCHHHHHHH--HHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhcccccc
Confidence            333222 11111010  01233344566778899999999999999986 4456677777663  334433332223333


Q ss_pred             chhhhHHHHhhhhcCCccccchhcc-------------cC-CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH
Q 009647          324 LLIPVLRSLGNLVAGDSSTISDVLV-------------PG-HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE  389 (530)
Q Consensus       324 v~~~al~~L~nl~~~~~~~~~~~i~-------------~g-~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~  389 (530)
                      -+..++++|.+|+.........+.+             +- ......-+..+..+++.+.+.++-.+..++..|++..=.
T Consensus       364 kqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWa  443 (524)
T KOG4413|consen  364 KQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWA  443 (524)
T ss_pred             hHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHH
Confidence            4568899999988543211111111             00 001123455567788888899999999999999876533


Q ss_pred             HHHHHHhCCcHHHHHHH
Q 009647          390 HKQLIHSSEALALLLHL  406 (530)
Q Consensus       390 ~~~~li~~~~l~~Li~l  406 (530)
                      +...+-..+++..+.+.
T Consensus       444 lkeifakeefieiVtDa  460 (524)
T KOG4413|consen  444 LKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             HHHHhcCccceeeeccc
Confidence            33333344665555443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.0012  Score=61.48  Aligned_cols=245  Identities=22%  Similarity=0.260  Sum_probs=149.3

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI  184 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~  184 (530)
                      +.....++.|+-.||.++....            +..+.+....+ ...+..+.+++|+.....+         ++|.|+
T Consensus        16 s~~l~~r~rALf~Lr~l~~~~~------------i~~i~ka~~d~-s~llkhe~ay~LgQ~~~~~---------Av~~l~   73 (289)
T KOG0567|consen   16 SQPLQNRFRALFNLRNLLGPAA------------IKAITKAFIDD-SALLKHELAYVLGQMQDED---------AVPVLV   73 (289)
T ss_pred             cHHHHHHHHHHHhhhccCChHH------------HHHHHHhcccc-hhhhccchhhhhhhhccch---------hhHHHH
Confidence            4455667888888888754321            34444444433 2344457888887766432         688888


Q ss_pred             HhhcC-CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC-----------
Q 009647          185 AHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP-----------  252 (530)
Q Consensus       185 ~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-----------  252 (530)
                      ..|.. +..+-||..|..+||++. +.          ..++.+-+..+++...+.+.+-.++..+-...           
T Consensus        74 ~vl~desq~pmvRhEAaealga~~-~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~  142 (289)
T KOG0567|consen   74 EVLLDESQEPMVRHEAAEALGAIG-DP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPY  142 (289)
T ss_pred             HHhcccccchHHHHHHHHHHHhhc-ch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcc
Confidence            87765 245778889999999876 22          34566666666677777777777776654321           


Q ss_pred             ---CCCchhhHHHhhchHHHHHHHhccCCHH-H-HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647          253 ---DPKPATELIKVDGLLDAILRHLKRADEE-L-TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP  327 (530)
Q Consensus       253 ---~~~~~~~~v~~~~~l~~L~~lL~~~d~~-v-~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~  327 (530)
                         +|.+.  .  ...-+.-+-..|.+.... . +..+.+.|.|+-  .++.+..++         +-| ..++.-.+..
T Consensus       143 ~SvdPa~p--~--~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~EeaI~al~---------~~l-~~~SalfrhE  206 (289)
T KOG0567|consen  143 ISVDPAPP--A--NLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEAINALI---------DGL-ADDSALFRHE  206 (289)
T ss_pred             ccCCCCCc--c--ccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHHHHHHH---------Hhc-ccchHHHHHH
Confidence               11111  0  112233333333333322 2 223444444442  344444333         334 2345556678


Q ss_pred             hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHH
Q 009647          328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH  405 (530)
Q Consensus       328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~  405 (530)
                      +..++|.+-+.                 -.+|.|...|..  .++.+|.+|+.+|+.|+.  ++         .++.|..
T Consensus       207 vAfVfGQl~s~-----------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e  258 (289)
T KOG0567|consen  207 VAFVFGQLQSP-----------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKE  258 (289)
T ss_pred             HHHHHhhccch-----------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHH
Confidence            88888876422                 378888888854  578999999999999954  22         4667778


Q ss_pred             HhcCCChhHHHHHHHHHHHhc
Q 009647          406 LLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       406 lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .+.+.++-|++.+..+|.-+-
T Consensus       259 ~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  259 YLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHHHH
Confidence            888888888888888886553

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.84  E-value=0.00056  Score=57.08  Aligned_cols=154  Identities=17%  Similarity=0.138  Sum_probs=118.3

Q ss_pred             hhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647          356 QVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  434 (530)
Q Consensus       356 ~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  434 (530)
                      +.+..|+.-+. ..+.+.+.....-|.|++. +|.+-..+.+.+++...+.-|...+..+...++..|||+|...     
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-----   89 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-----   89 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-----
Confidence            45666666554 3466778888888888865 5677788889999999999999999999999999999999752     


Q ss_pred             CchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHH
Q 009647          435 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA  514 (530)
Q Consensus       435 ~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A  514 (530)
                            ....++.+.+.++.++..+.++...++..++.++..+.....  ..+..+-.-..++.++....+...+.+..|
T Consensus        90 ------~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R--t~r~ell~p~Vv~~v~r~~~s~s~~~rnLa  161 (173)
T KOG4646|consen   90 ------TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER--TERDELLSPAVVRTVQRWRESKSHDERNLA  161 (173)
T ss_pred             ------HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc--chhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence                  457889999999999999999888888888888877643221  123344445566777777767777788888


Q ss_pred             HHHHHhhcC
Q 009647          515 NGLVDKYFG  523 (530)
Q Consensus       515 ~~il~~~f~  523 (530)
                      ...++++..
T Consensus       162 ~~fl~~~~~  170 (173)
T KOG4646|consen  162 SAFLDKHVH  170 (173)
T ss_pred             HHHHHhhcc
Confidence            888887753

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.83  E-value=0.0019  Score=65.39  Aligned_cols=309  Identities=16%  Similarity=0.142  Sum_probs=182.6

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHH-HHHHHHHHHhcCChhhHHhh-cCCcHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKAL-LPALPL  182 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~-eA~~~L~nia~~~~~~~~~i-~~~v~~  182 (530)
                      +++.+.+..|.+.+|.++...  ..+..+.+.++=-.++..|..++..+.-+ +|...+..+..-.. ..+.+ .+.+..
T Consensus        36 ~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvra  112 (371)
T PF14664_consen   36 SDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRA  112 (371)
T ss_pred             CCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHH
Confidence            555889999999999998654  34566778887777888888665443333 47777766663311 11111 256778


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  262 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~  262 (530)
                      ++.+..+ ++...+..|+.+|.-++.-+|   +.+..+|++..|++.+.++..++.+.+++++..+...+  . .+..+.
T Consensus       113 lvaiae~-~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p--~-tR~yl~  185 (371)
T PF14664_consen  113 LVAIAEH-EDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP--R-TRKYLR  185 (371)
T ss_pred             HHHHHhC-CchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc--c-hhhhhc
Confidence            8888877 678899999999999998554   56889999999999888766668999999999998653  2 233333


Q ss_pred             hhchHHHHHHHhccC-------CH--HHHHHHHHHHHHhhcCCchhHHHHH-h-cCchHHHHHHHhcCCCccchhhhHHH
Q 009647          263 VDGLLDAILRHLKRA-------DE--ELTTEVAWVVVYLSALSNVATSLLV-K-SGVLQLLVERLATSNSLQLLIPVLRS  331 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~-------d~--~v~~~a~~~L~~L~~~~~~~~~~i~-~-~g~l~~Lv~lL~~~~~~~v~~~al~~  331 (530)
                      ..--+..++.-+.+.       +.  +-...+..++..+-..=+ ..-.+. + ...+..|+..| ..++++++...+..
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl~l~~~~~~~lksLv~~L-~~p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLLYLSMNDFRGLKSLVDSL-RLPNPEIRKAILDL  263 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-ceeeeecCCchHHHHHHHHH-cCCCHHHHHHHHHH
Confidence            222344444333322       22  345566666666654211 111111 1 14677788888 57887888888888


Q ss_pred             HhhhhcCCccc-cchhcccCCC-cchhhHHHHHHHhc--cCcHhHHHHHHHHHHHHhcCCH-HHHHHHHhCCcHHHHHHH
Q 009647          332 LGNLVAGDSST-ISDVLVPGHG-ITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSV-EHKQLIHSSEALALLLHL  406 (530)
Q Consensus       332 L~nl~~~~~~~-~~~~i~~g~~-~~~~~l~~L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~-~~~~~li~~~~l~~Li~l  406 (530)
                      +..+..-.... ..... .|.. ...+-..--.++-.  .+.......-..--.|+..+.. -....++++|+++.|+++
T Consensus       264 l~dllrik~p~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l  342 (371)
T PF14664_consen  264 LFDLLRIKPPSWTESFL-AGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL  342 (371)
T ss_pred             HHHHHCCCCCCcccchh-hcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            87776443221 11111 0000 00111100000000  0000000000000112222111 123456799999999999


Q ss_pred             hcCC-ChhHHHHHHHHHHHhc
Q 009647          407 LSTS-PFDIKKEVAYVLGNLC  426 (530)
Q Consensus       407 L~~~-~~~v~~eA~~aL~nl~  426 (530)
                      ..+. +..+...|...|+.+.
T Consensus       343 i~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  343 IESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HhcCCCchHHHHHHHHHHHHH
Confidence            9776 7889999999988774

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.82  E-value=0.017  Score=62.87  Aligned_cols=344  Identities=16%  Similarity=0.171  Sum_probs=193.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      +.++..++.   ..|...-..|+..+.-++..  .|..-.-+..-+++.++.+++++   -+|-.|..++.++-      
T Consensus       695 L~el~~Lis---esdlhvt~~a~~~L~tl~~~--~ps~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f------  760 (1233)
T KOG1824|consen  695 LVELPPLIS---ESDLHVTQLAVAFLTTLAII--QPSSLLKISNPILDEIIRLLRSP---LLQGGALSALLLFF------  760 (1233)
T ss_pred             HHHhhhhhh---HHHHHHHHHHHHHHHHHHhc--ccHHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHH------
Confidence            455555553   34444445555555555432  23333334566889999999864   34444444443332      


Q ss_pred             HHhhc----C--CcHHHHHhhcCCC----CHHHHHHHHHHHHhhcC----CCchhHHHHHhcCChhhhHhhcCC--CChh
Q 009647          173 TKALL----P--ALPLLIAHLGEKS----SSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP--NKGS  236 (530)
Q Consensus       173 ~~~i~----~--~v~~L~~lL~~~~----~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~lL~~--~~~~  236 (530)
                       ++++    +  ....++.++..+-    ...+-.+|.+.++.++.    -.++-     .......|+.-+.+  .+..
T Consensus       761 -~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~  834 (1233)
T KOG1824|consen  761 -QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDS  834 (1233)
T ss_pred             -HHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchh
Confidence             1111    1  1445666665521    11244555554444332    11100     11123334433333  3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC-chhHHHHHhc---C-----
Q 009647          237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS-NVATSLLVKS---G-----  307 (530)
Q Consensus       237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~i~~~---g-----  307 (530)
                      ++--|+.+|+.+-++....+.      .+.-..++.-++++.+++...|..||+.++.|+ +.+...+.+.   .     
T Consensus       835 ikvfa~LslGElgr~~~~s~~------~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Qy  908 (1233)
T KOG1824|consen  835 IKVFALLSLGELGRRKDLSPQ------NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQY  908 (1233)
T ss_pred             HHHHHHhhhhhhccCCCCCcc------hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHH
Confidence            788888999999988765543      344457788999999999999999999999864 3333332211   0     


Q ss_pred             -chHHHHHHH-------------------hcC---CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHH
Q 009647          308 -VLQLLVERL-------------------ATS---NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC  364 (530)
Q Consensus       308 -~l~~Lv~lL-------------------~~~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~l  364 (530)
                       .+..|.+.+                   ..+   ...-.+.-...|||.++..++              ...+|.|-..
T Consensus       909 LLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------------esLlpkL~~~  974 (1233)
T KOG1824|consen  909 LLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------------ESLLPKLKLL  974 (1233)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------------HHHHHHHHHH
Confidence             112222222                   111   112223444555555554433              3588999999


Q ss_pred             hccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647          365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV  444 (530)
Q Consensus       365 L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~  444 (530)
                      +.++.+..|..+..++--.....++-+..+... .+...+.+++++|.+|++.|.-++...+.+      .|..|.+-..
T Consensus       975 ~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~-~ig~fl~~~~dpDl~VrrvaLvv~nSaahN------KpslIrDllp 1047 (1233)
T KOG1824|consen  975 LRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQ-QIGDFLKLLRDPDLEVRRVALVVLNSAAHN------KPSLIRDLLP 1047 (1233)
T ss_pred             hcCCCcchhhhhhheeeeeecCCCCccCHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHcc------CHhHHHHHHH
Confidence            999998888887777765555555555555443 466788899999999999999999888764      3433322221


Q ss_pred             ----HHHhc-CChHHHHhhhcc--------CCHHHHHHHHHHHHHHHccCCC
Q 009647          445 ----SLVGR-GCLSGFIDLVRS--------ADIEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       445 ----~l~~~-g~i~~L~~lL~~--------~d~~i~~~~L~~L~~il~~~~~  483 (530)
                          .+.+. .+=..++.-.+.        +.-++++.+.++++.++..+.+
T Consensus      1048 eLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld 1099 (1233)
T KOG1824|consen 1048 ELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLD 1099 (1233)
T ss_pred             HHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhh
Confidence                11111 122223333222        1235677888888888876643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.81  E-value=0.00059  Score=75.34  Aligned_cols=299  Identities=16%  Similarity=0.083  Sum_probs=184.9

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcC---CCchh
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAG---EGEEF  213 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~---d~~~~  213 (530)
                      +++.+..+++.-.....+.+|+..|..++.-..+  +..+ -.+|.++.++.+ +..+||-.|+.+|..+-.   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4677777777544456678899988888853321  1122 389999999998 789999999998887764   33344


Q ss_pred             HHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647          214 RNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  292 (530)
Q Consensus       214 r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  292 (530)
                      -..++..-++|-|-.++.+ ....++-.-+.+|+.|+..    ..+ +. +...-.....+++.++.+..         -
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~r-Fl-e~~q~~~~~g~~n~~nset~---------~  564 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYR-FL-ELTQELRQAGMLNDPNSETA---------P  564 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHH-HH-HHHHHHHhcccccCcccccc---------c
Confidence            4456666678888888887 4566677777788888742    111 11 11112222233444443300         0


Q ss_pred             hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647          293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  372 (530)
Q Consensus       293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i  372 (530)
                      -...+...+.+.. ++-...+.+| ..+++-|+...+..|+-++..-.....         +.-+++.|+.+|++.++.+
T Consensus       565 ~~~~~~~~~~L~~-~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFGk~ks---------ND~iLshLiTfLNDkDw~L  633 (1431)
T KOG1240|consen  565 EQNYNTELQALHH-TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFGKEKS---------NDVILSHLITFLNDKDWRL  633 (1431)
T ss_pred             ccccchHHHHHHH-HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhhhccc---------ccchHHHHHHHhcCccHHH
Confidence            0011222233322 2333344455 344455666667777777643211110         1237899999999999988


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  451 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~l-i~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  451 (530)
                      |-.=.-.|.-++..    +..- ++..++|.|.+-|.++++-|...|+.+|.-++...            .+++..-..+
T Consensus       634 R~aFfdsI~gvsi~----VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~------------ll~K~~v~~i  697 (1431)
T KOG1240|consen  634 RGAFFDSIVGVSIF----VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG------------LLRKPAVKDI  697 (1431)
T ss_pred             HHHHHhhccceEEE----EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc------------ccchHHHHHH
Confidence            87655566544331    1111 34458899999999999999999999999998631            2333333344


Q ss_pred             hHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          452 LSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      ++-..-+|..++.-+...++.+|..+.+..
T Consensus       698 ~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  698 LQDVLPLLCHPNLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             HHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence            455555677788888888888888876543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.81  E-value=0.002  Score=69.62  Aligned_cols=349  Identities=12%  Similarity=0.112  Sum_probs=200.0

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647           98 SAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL  177 (530)
Q Consensus        98 ~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~  177 (530)
                      .+++.+.+.|-+-++-|+.-|-.-|.... ...+.--+..++..++++|...+ .++|-.|..|++-+++.-.+.  .+.
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~--~le   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKED--QLE   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHH--HHH
Confidence            45666679999999999998877665431 11111123457788888888655 788899999999999654322  222


Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhh----hHhhcCC--CChhHHHHHHHHH----HH
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP----LARMMLP--NKGSTVRTAAWAL----SN  247 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~----L~~lL~~--~~~~~~~~a~~~L----~n  247 (530)
                      ..+..|..-+-+ ...+.+..+.-.|.-....-+..........+.+.    +...+..  +...++..++-.+    ++
T Consensus        85 ~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   85 TIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             HHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence            344555544333 34455554443332222222222222233333333    3333322  2233444444333    33


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647          248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP  327 (530)
Q Consensus       248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~  327 (530)
                      +..-   -+  ++  ..+++..++.-+.++-.-++..++.+|+.++...+..   + -.+++..|++-|.....+.....
T Consensus       164 ~g~l---l~--~f--h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---l-y~~li~~Ll~~L~~~~q~~~~rt  232 (1233)
T KOG1824|consen  164 FGTL---LP--NF--HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---L-YVELIEHLLKGLSNRTQMSATRT  232 (1233)
T ss_pred             hccc---Cc--ch--HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHhccCCCCchHHHHH
Confidence            3321   11  11  3466666666677777889999999999999632211   1 12345556665643334444445


Q ss_pred             hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh---ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647          328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL---KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  404 (530)
Q Consensus       328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL---~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li  404 (530)
                      -+.+|+.++.........-+       ..++|.+.+..   ...+.++|+..+.++.-+....+..+-..+.. ++..++
T Consensus       233 ~Iq~l~~i~r~ag~r~~~h~-------~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l  304 (1233)
T KOG1824|consen  233 YIQCLAAICRQAGHRFGSHL-------DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPE-IINLCL  304 (1233)
T ss_pred             HHHHHHHHHHHhcchhhccc-------chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHH
Confidence            66777777755443333333       35788888888   56677899999999988877665544332221 222333


Q ss_pred             HHhcC----------------------------------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 009647          405 HLLST----------------------------------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG  450 (530)
Q Consensus       405 ~lL~~----------------------------------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g  450 (530)
                      +.+..                                  -+.+||++|+.++..+...-          .+.+..+ -+.
T Consensus       305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR----------~E~L~~~-~q~  373 (1233)
T KOG1824|consen  305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR----------LEMLPDF-YQT  373 (1233)
T ss_pred             HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc----------HHHHHHH-HHH
Confidence            33211                                  01358999999998876521          2333222 234


Q ss_pred             ChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          451 CLSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      +=|.++.-++..+..+...+..+...++...
T Consensus       374 l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt  404 (1233)
T KOG1824|consen  374 LGPALISRFKEREENVKADVFHAYIALLKQT  404 (1233)
T ss_pred             hCHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence            5577888888777778777777777777643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.78  E-value=4.4e-05  Score=54.58  Aligned_cols=53  Identities=38%  Similarity=0.581  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhh
Q 009647          153 EQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNV  206 (530)
Q Consensus       153 ~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nl  206 (530)
                      .++..|+|+|++++....+.....+ .++|.|+.+|.+ +++.||..|+|+||+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            4566799999999988877777766 699999999987 6789999999999986

...

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0025  Score=67.84  Aligned_cols=299  Identities=18%  Similarity=0.157  Sum_probs=200.3

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHH-HHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEA-AWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA-~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      .|.++.+-.-|.+.. +.-+.+| -.++..+..|..     +-...|-+++.+.. .+.+++.-+---+.|.+...|.. 
T Consensus        12 k~ei~elks~l~s~~-~~kr~~a~kkvIa~Mt~G~D-----vSslF~dvvk~~~T-~dlelKKlvyLYl~nYa~~~P~~-   83 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQS-KEKRKDAVKKVIAYMTVGKD-----VSSLFPDVVKCMQT-RDLELKKLVYLYLMNYAKGKPDL-   83 (734)
T ss_pred             hhhchHHHHHhhhhh-hhhHHHHHHHHHhcCccCcc-----hHhhhHHHHhhccc-CCchHHHHHHHHHHHhhccCchH-
Confidence            344555555553322 2334443 346666665521     12356778888876 67889999999999999865542 


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                          ..++++.+++=..++++.++.-|..+++.+--.   +    +  ...+...|.+.+++.++.++..+.-+...+-.
T Consensus        84 ----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~---~----i--~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~  150 (734)
T KOG1061|consen   84 ----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD---K----I--TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD  150 (734)
T ss_pred             ----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh---H----H--HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence                335667777777788888888887776655321   1    2  24667889999999999999999998888876


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                      .+   .+...+.|.+..|..++. +.++.|..+|+.+|..|...+....-..+      ....+..++..+......-+.
T Consensus       151 ~~---~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l------~~~~~~~lL~al~ec~EW~qi  220 (734)
T KOG1061|consen  151 ID---PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLEL------NPQLINKLLEALNECTEWGQI  220 (734)
T ss_pred             CC---hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccc------cHHHHHHHHHHHHHhhhhhHH
Confidence            43   345678899999999994 78889999999999999977654221112      233455555555544444455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647          375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  454 (530)
Q Consensus       375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  454 (530)
                      ...-++.+-...++...+.     ++..+...|++.+..+.-.|..++.++...           ..++....-..+-++
T Consensus       221 ~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~-----------~~~~~~~~~~K~~~p  284 (734)
T KOG1061|consen  221 FILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKY-----------LKQVNELLFKKVAPP  284 (734)
T ss_pred             HHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHH-----------HHHHHHHHHHHhccc
Confidence            5555555444433322332     455677778888888888888888887642           133445566678889


Q ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          455 FIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       455 L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      |+.++.+.. ++..++|.=+.-|+...+
T Consensus       285 l~tlls~~~-e~qyvaLrNi~lil~~~p  311 (734)
T KOG1061|consen  285 LVTLLSSES-EIQYVALRNINLILQKRP  311 (734)
T ss_pred             ceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence            999888766 888888887777776554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.76  E-value=7.4e-05  Score=59.14  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             hhhhHhhc-CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647          223 LPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS  301 (530)
Q Consensus       223 i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~  301 (530)
                      ||.|++.| +++++.++..++++|+++.             ...++|.|..++.++++.++..++++|+.+..       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence            57899988 7889999999999998432             23668999999999999999999999998842       


Q ss_pred             HHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       302 ~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                          ..+++.|.+++.++++..++..|..+||
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                3467888888864445556788888876

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.71  E-value=0.00078  Score=63.85  Aligned_cols=189  Identities=17%  Similarity=0.129  Sum_probs=116.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CC
Q 009647          104 GKGAMQKRVNALRELRRLLSRF-EFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PA  179 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~-~~~~~~~ii~--~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~  179 (530)
                      .+.|=+.+.+|+..|++++..+ .......+++  ..+++.++..+.+.. ..+...|+.++..++..-.......+ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4678899999999999998766 1122223322  255566666666433 34567899999999865444444444 48


Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC-CCchh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD-PKPAT  258 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~~~~  258 (530)
                      +|.|++.+.+ +..-+++.|..+|..++...+.....+     ++.+...+++.++.++..++-.+..+..... +....
T Consensus        96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            9999999988 678899999999999998543111111     4556667778899999999988888876532 11111


Q ss_pred             h-HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647          259 E-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA  299 (530)
Q Consensus       259 ~-~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~  299 (530)
                      . ......+++.+.+++.+.+++++..+-.++..+....++.
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            1 1112467888999999999999999888888776543333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0019  Score=67.37  Aligned_cols=191  Identities=15%  Similarity=0.164  Sum_probs=126.6

Q ss_pred             hhhhHhhcCCCChhHHHHH---HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647          223 LPPLARMMLPNKGSTVRTA---AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA  299 (530)
Q Consensus       223 i~~L~~lL~~~~~~~~~~a---~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~  299 (530)
                      ....++++.+.+..++..|   +|.++|.+-...+....+.-....++..++..+.+-.-.|+..|+.+|+.+..-+++.
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~  315 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI  315 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence            3446677777778888766   5777777733222222222123467788888888888889999999999888767776


Q ss_pred             HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC-----------CccccchhcccCCCcchhhHHHHHHHhccC
Q 009647          300 TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-----------DSSTISDVLVPGHGITDQVIAVLVKCLKSE  368 (530)
Q Consensus       300 ~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-----------~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~  368 (530)
                      +...++..++..+-+.=..+.    +-.++..=|.-++|           .+.+...++.      +|+-..++.-|.++
T Consensus       316 i~QTLdKKlms~lRRkr~ahk----rpk~l~s~GewSsGk~~~advpsee~d~~~~siI~------sGACGA~VhGlEDE  385 (823)
T KOG2259|consen  316 IQQTLDKKLMSRLRRKRTAHK----RPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP------SGACGALVHGLEDE  385 (823)
T ss_pred             HHHHHHHHHhhhhhhhhhccc----chHHHHhcCCcccCccccccCchhhcccccccccc------ccccceeeeechHH
Confidence            666666555543332111111    11122222222222           2233344554      46888888888888


Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      -.+||+.|...+..++..++.....     .+..|++++.+...+||..|..+|..++.+
T Consensus       386 f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  386 FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999877665443     467899999999999999999999998764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.69  E-value=0.0001  Score=48.93  Aligned_cols=38  Identities=34%  Similarity=0.495  Sum_probs=35.2

Q ss_pred             HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      ++...+++.|++++|+.++.+++.++++.|+|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46778889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.69  E-value=0.00096  Score=73.78  Aligned_cols=269  Identities=19%  Similarity=0.168  Sum_probs=165.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh--
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ--  170 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~--  170 (530)
                      +.-+.+.++.+.  ..+.++.|+..|+.+ +..-.   ++..=.-++|.+|.++.... ..++..|..+|+.+...-.  
T Consensus       424 vs~lts~IR~lk--~~~tK~~ALeLl~~l-S~~i~---de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~  496 (1431)
T KOG1240|consen  424 VSVLTSCIRALK--TIQTKLAALELLQEL-STYID---DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDI  496 (1431)
T ss_pred             HHHHHHHHHhhh--cchhHHHHHHHHHHH-hhhcc---hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCC
Confidence            344455555443  356788899888887 43322   22333568999999998644 5677788888888764211  


Q ss_pred             hhHH-hhc-C-CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh---HHHHHhcCCh---------------------
Q 009647          171 EETK-ALL-P-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF---RNVLLSQGAL---------------------  223 (530)
Q Consensus       171 ~~~~-~i~-~-~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~---r~~~~~~g~i---------------------  223 (530)
                      ...+ .++ + .+|.|-.++.++....++-.-+.+|+.+|.---.+   -..+...|..                     
T Consensus       497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~  576 (1431)
T KOG1240|consen  497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH  576 (1431)
T ss_pred             CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence            1112 222 3 78888888877444455555555666655311111   1111111111                     


Q ss_pred             ----hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647          224 ----PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA  299 (530)
Q Consensus       224 ----~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~  299 (530)
                          .....++.++++-+++..+-.+.-||..-.-...     ..-+++.|...|++.|..++..-.-.+.+++-.    
T Consensus       577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~----  647 (1431)
T KOG1240|consen  577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF----  647 (1431)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEE----
Confidence                1222344444455555555555555542110100     234577788888888887777777766666531    


Q ss_pred             HHHH-HhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHH
Q 009647          300 TSLL-VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  378 (530)
Q Consensus       300 ~~~i-~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~  378 (530)
                      +... ++..++|.|.+-| ....+.|...||++|.-++...--....++        .+++....+|-|++.-||..+|.
T Consensus       648 VG~rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--------~i~~~v~PlL~hPN~WIR~~~~~  718 (1431)
T KOG1240|consen  648 VGWRSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAVK--------DILQDVLPLLCHPNLWIRRAVLG  718 (1431)
T ss_pred             EeeeeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHHH--------HHHHhhhhheeCchHHHHHHHHH
Confidence            1111 3456778888878 467788999999999999977655666666        48888889999999999999999


Q ss_pred             HHHHHhcC
Q 009647          379 VLSNIAAG  386 (530)
Q Consensus       379 ~Lsnl~~~  386 (530)
                      .|..++..
T Consensus       719 iI~~~~~~  726 (1431)
T KOG1240|consen  719 IIAAIARQ  726 (1431)
T ss_pred             HHHHHHhh
Confidence            99887653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.67  E-value=0.00033  Score=66.46  Aligned_cols=183  Identities=15%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             cCCCccchhhhHHHHhhhhcCC--ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009647          318 TSNSLQLLIPVLRSLGNLVAGD--SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH  395 (530)
Q Consensus       318 ~~~~~~v~~~al~~L~nl~~~~--~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li  395 (530)
                      .+.+.+.+..++..|..++.+.  ......+.+.    -..++..+...+.+.+..+.+.||.++..++..........+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~----l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~   92 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVEC----LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA   92 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHH----HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHH----HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence            4567777888999999988776  2222222210    012345666677777778999999999999876444455444


Q ss_pred             hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647          396 SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  475 (530)
Q Consensus       396 ~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~  475 (530)
                      + .++|.|+..+.++..-++..|..+|..++....   ..        ..+    .++.+...+.++++.+...++..+.
T Consensus        93 ~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~--------~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~  156 (228)
T PF12348_consen   93 D-ILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YS--------PKI----LLEILSQGLKSKNPQVREECAEWLA  156 (228)
T ss_dssp             H-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H----------HH----HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cH--------HHH----HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4 378999999999988999999999999987531   00        011    1455677788899999999999999


Q ss_pred             HHHccCCCCcchhHHHH----hchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          476 LVLRGMPNHEGTKLVER----EDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       476 ~il~~~~~~~~~~~i~~----~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      .++...+..  ...+..    ....+.|..+..+.+++|++.|...+..|+
T Consensus       157 ~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  157 IILEKWGSD--SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             HHHTT-------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHccch--HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            999766511  111122    224456777889999999999987777664

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.65  E-value=0.003  Score=60.34  Aligned_cols=231  Identities=15%  Similarity=0.080  Sum_probs=148.6

Q ss_pred             CHHHHHHHHHHHHhhcCCCchhHHHHHhcC-ChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchH
Q 009647          192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQG-ALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLL  267 (530)
Q Consensus       192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g-~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~~~l  267 (530)
                      ++-.+.-|+.++.++..+ ++.|+.+-..+ .-..++.++++.  ...++-+...+++.|+..+  ... +.|. ....+
T Consensus       162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~--~~a-qdi~K~~dli  237 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK--ECA-QDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH--HHH-HHHHHHHHHH
Confidence            344677899999999984 67887766554 334466666653  5788889998888888652  222 2221 22445


Q ss_pred             HHHHHHhccC-CHHHHHHHHHHHHHhhc-CCchhHHHHHhcCchHHHHHHHhc--CCCccchhhhHHHHhhhhcCCcccc
Q 009647          268 DAILRHLKRA-DEELTTEVAWVVVYLSA-LSNVATSLLVKSGVLQLLVERLAT--SNSLQLLIPVLRSLGNLVAGDSSTI  343 (530)
Q Consensus       268 ~~L~~lL~~~-d~~v~~~a~~~L~~L~~-~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~v~~~al~~L~nl~~~~~~~~  343 (530)
                      .-++++.... .+.|..-+|..+.++++ .+...+..+.-.|-+.+.++.|..  ..++++....-+.=..+........
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~  317 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence            5566666543 45688889999999998 334555555555655556666642  2344433322111111111110000


Q ss_pred             -----chhcccCCC---------------------cchhhHHHHHHHhccCcHh-HHHHHHHHHHHHhcCCHHHHHHHHh
Q 009647          344 -----SDVLVPGHG---------------------ITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQLIHS  396 (530)
Q Consensus       344 -----~~~i~~g~~---------------------~~~~~l~~L~~lL~~~~~~-i~~~A~~~Lsnl~~~~~~~~~~li~  396 (530)
                           -.-+++|..                     =+..++..|..++++..+. ...-||.-|..+....|+....+..
T Consensus       318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K  397 (432)
T COG5231         318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK  397 (432)
T ss_pred             HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence                 000111100                     0345788899999887765 5667888899998889999988999


Q ss_pred             CCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          397 SEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       397 ~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .|+=..+++++.+++++|+.+|..|+-.+.
T Consensus       398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         398 YGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999999999986654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.084  Score=55.90  Aligned_cols=268  Identities=13%  Similarity=0.081  Sum_probs=154.4

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcC------------CCCHHHHHHHHHH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE------------KSSSPVAEQCAWA  202 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~------------~~~~~v~~~a~~~  202 (530)
                      .+...+++.+|..++ -.+...|...+.-++...++.-...+ .++..|......            -+.|-++..++.+
T Consensus       186 ~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl  264 (938)
T KOG1077|consen  186 GEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL  264 (938)
T ss_pred             hhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence            345677778877544 22334455666666665554433333 244444333221            1456777777888


Q ss_pred             HHhhcC-CCchhHHHHHhcCChhhhHhhcCCC-------ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh
Q 009647          203 LGNVAG-EGEEFRNVLLSQGALPPLARMMLPN-------KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL  274 (530)
Q Consensus       203 L~nla~-d~~~~r~~~~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL  274 (530)
                      |.+.-. +++..|..+.+  ++..++...+.+       .....-+.++-.-+|+.+-++.  .+.+  ..++..|.++|
T Consensus       265 Lq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e--~~ll--~~~~~~Lg~fl  338 (938)
T KOG1077|consen  265 LQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE--PELL--SRAVNQLGQFL  338 (938)
T ss_pred             HHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc--HHHH--HHHHHHHHHHh
Confidence            877643 22233433332  234444444321       1222333444455666554433  3343  47788888889


Q ss_pred             ccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc
Q 009647          275 KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT  354 (530)
Q Consensus       275 ~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~  354 (530)
                      .+....++.-++..+++|+.. ...++.+-.+  ...++..|....|.+++..|+..|-.+|.....             
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na-------------  402 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA-------------  402 (938)
T ss_pred             hcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH-------------
Confidence            888888998899999999873 4445555443  566777785578999999999999998855432             


Q ss_pred             hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH-------HHHHHH-------HhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647          355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV-------EHKQLI-------HSSEALALLLHLLSTSPFDIKKEVAY  420 (530)
Q Consensus       355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~-------~~~~~l-------i~~~~l~~Li~lL~~~~~~v~~eA~~  420 (530)
                      ..++.-|++.|.+-++.+|++..-=+.=|+....       ..+-.+       ++.++.-.++++..+. ++++..|+.
T Consensus       403 k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn-edlq~yaak  481 (938)
T KOG1077|consen  403 KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN-EDLQGYAAK  481 (938)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc-hhhhHHHHH
Confidence            1366677888888888888887665555543210       111111       1223445555554433 467777777


Q ss_pred             HHHHhcC
Q 009647          421 VLGNLCV  427 (530)
Q Consensus       421 aL~nl~~  427 (530)
                      .+.....
T Consensus       482 ~~fe~Lq  488 (938)
T KOG1077|consen  482 RLFEYLQ  488 (938)
T ss_pred             HHHHHHh
Confidence            6655543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.61  E-value=0.00011  Score=48.69  Aligned_cols=39  Identities=36%  Similarity=0.653  Sum_probs=36.1

Q ss_pred             hhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647          212 EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  250 (530)
Q Consensus       212 ~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~  250 (530)
                      +.+..+.+.|++++|+.++.+++.++++.++|+|+||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            478889999999999999999899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.61  E-value=0.001  Score=68.62  Aligned_cols=221  Identities=14%  Similarity=0.150  Sum_probs=126.8

Q ss_pred             hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009647          224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSL  302 (530)
Q Consensus       224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~  302 (530)
                      ..++.+|+++.+.++..|+-..+.|+.--  +.+-+.-.....=..|..-|...+++++-..+.+++.+..... ...+-
T Consensus       607 StiL~~L~~k~p~vR~~aadl~~sl~~vl--k~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp  684 (975)
T COG5181         607 STILKLLRSKPPDVRIRAADLMGSLAKVL--KACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP  684 (975)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHH--HhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence            33445556666666666666666554210  0010100001111224455566788888887777777764211 00111


Q ss_pred             HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647          303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  382 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn  382 (530)
                      - -.|++|.|...| ++...++..+.+..+|.|+...++.+..- +     +..+---|+.+|.+.+.++|+.|..+++.
T Consensus       685 P-i~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~r-E-----WMRIcfeLvd~Lks~nKeiRR~A~~tfG~  756 (975)
T COG5181         685 P-ISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVR-E-----WMRICFELVDSLKSWNKEIRRNATETFGC  756 (975)
T ss_pred             c-hhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHH-H-----HHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence            1 258999999999 57888899999999999998776643221 1     23455567888888899999999999999


Q ss_pred             HhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc
Q 009647          383 IAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS  461 (530)
Q Consensus       383 l~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~  461 (530)
                      |+.. .++        .++..|++-|+..+...+.-..-+|+-.+..+    | |            -.++|.|.+=...
T Consensus       757 Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~c----g-p------------fsVlP~lm~dY~T  811 (975)
T COG5181         757 ISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAEYC----G-P------------FSVLPTLMSDYET  811 (975)
T ss_pred             HHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc----C-c------------hhhHHHHHhcccC
Confidence            8753 222        24556666666665544444444443333211    1 0            1244555554445


Q ss_pred             CCHHHHHHHHHHHHHHHc
Q 009647          462 ADIEAARLGLQFMELVLR  479 (530)
Q Consensus       462 ~d~~i~~~~L~~L~~il~  479 (530)
                      ++..++.-+|.++.-+++
T Consensus       812 Pe~nVQnGvLkam~fmFe  829 (975)
T COG5181         812 PEANVQNGVLKAMCFMFE  829 (975)
T ss_pred             chhHHHHhHHHHHHHHHH
Confidence            555555555555555554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.063  Score=58.98  Aligned_cols=281  Identities=16%  Similarity=0.142  Sum_probs=163.7

Q ss_pred             cCCHHHHHHHhc------CCCChHHHHH-HHHHHHHHhcC---ChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHH
Q 009647          136 AGAIPVLVQCLA------FGSPDEQLLE-AAWCLTNIAAG---KQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALG  204 (530)
Q Consensus       136 ~g~v~~Lv~lL~------~~~~~~~~~e-A~~~L~nia~~---~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~  204 (530)
                      .|.++.++..|+      .++.+..|.+ |...++++++-   ++.....+- -.++.++-.+++ +.--+|..|+|.++
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~  487 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLS  487 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHH
Confidence            467778888887      3333445566 88899988831   111111111 145555555666 66789999999999


Q ss_pred             hhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHH
Q 009647          205 NVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEEL  281 (530)
Q Consensus       205 nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v  281 (530)
                      .++.  .++++...-..++....+.|. +.+..++..|+.+|..+.++..  ...+.+.  ..+.++.|+++.+.-+.+.
T Consensus       488 ~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~--~~~e~~~~hvp~~mq~lL~L~ne~End~  563 (1010)
T KOG1991|consen  488 QFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE--QADEKVSAHVPPIMQELLKLSNEVENDD  563 (1010)
T ss_pred             HHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch--hhhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence            9994  345555555566777777777 6788999999999999887642  1112111  2355556666766655555


Q ss_pred             HHHHHHHHH-HhhcCCchhHHHHHhcCchHHHHHHHhcC--CCc---cchhhhHHHHhhhh---cCCccccchhcccCCC
Q 009647          282 TTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATS--NSL---QLLIPVLRSLGNLV---AGDSSTISDVLVPGHG  352 (530)
Q Consensus       282 ~~~a~~~L~-~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~---~v~~~al~~L~nl~---~~~~~~~~~~i~~g~~  352 (530)
                      +..+.-.+. +.+..-......+ -..+.....+++..+  .++   .-...|..+|..|.   ..-+.....+.+.   
T Consensus       564 Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l---  639 (1010)
T KOG1991|consen  564 LTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL---  639 (1010)
T ss_pred             HHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---
Confidence            555544432 2221100111111 112334444455421  111   22233433333332   2211111111110   


Q ss_pred             cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                       ...++|++-.+|.+.-.++-.+++-.+.+++...++..-.+.  |+++.+.+.+.....+--.+..-+|.|+...
T Consensus       640 -e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~  712 (1010)
T KOG1991|consen  640 -EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTY  712 (1010)
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence             235777777788887778889999999998876544333333  3788888888888888888899999998764

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.0094  Score=55.77  Aligned_cols=254  Identities=17%  Similarity=0.224  Sum_probs=150.6

Q ss_pred             HHHHHHhcCCCChH-HHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647          140 PVLVQCLAFGSPDE-QLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL  218 (530)
Q Consensus       140 ~~Lv~lL~~~~~~~-~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~  218 (530)
                      ..+.+.|...+.+. -.+.|...|.|+.+...         +..+.+...+ .+...+...+++||.....         
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~---------i~~i~ka~~d-~s~llkhe~ay~LgQ~~~~---------   66 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPAA---------IKAITKAFID-DSALLKHELAYVLGQMQDE---------   66 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCChHH---------HHHHHHhccc-chhhhccchhhhhhhhccc---------
Confidence            34445554433222 12457777777765432         4445555554 4567788899999987753         


Q ss_pred             hcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 009647          219 SQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS  296 (530)
Q Consensus       219 ~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  296 (530)
                        .++|.|+..+...  .+-++-.|..+|.++. .            ...++.+-+..+++-.++..-+..++.++-+.+
T Consensus        67 --~Av~~l~~vl~desq~pmvRhEAaealga~~-~------------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~  131 (289)
T KOG0567|consen   67 --DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD  131 (289)
T ss_pred             --hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c------------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence              4789999988754  5677788999998886 2            134455666665666677777777777776532


Q ss_pred             chhH----HHH--H------hcCchHHHHHHHhcCCCccc-hhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHH
Q 009647          297 NVAT----SLL--V------KSGVLQLLVERLATSNSLQL-LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK  363 (530)
Q Consensus       297 ~~~~----~~i--~------~~g~l~~Lv~lL~~~~~~~v-~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~  363 (530)
                      .-..    ...  +      ..+-+..|-..|.+.+.+.. +..|+..|.|+-                 ....+-.|..
T Consensus       132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----------------~EeaI~al~~  194 (289)
T KOG0567|consen  132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----------------TEEAINALID  194 (289)
T ss_pred             ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----------------cHHHHHHHHH
Confidence            1000    000  0      01112222222222221111 124444444432                 2235666777


Q ss_pred             HhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 009647          364 CLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE  441 (530)
Q Consensus       364 lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~  441 (530)
                      =+..++.-.|.+++++++.+-...           .+|.|...|.  ...+-||.+|+.||+.++..             
T Consensus       195 ~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-------------  250 (289)
T KOG0567|consen  195 GLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE-------------  250 (289)
T ss_pred             hcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------------
Confidence            777778889999999999884432           5788888874  45678999999999998641             


Q ss_pred             HHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHH
Q 009647          442 HLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMEL  476 (530)
Q Consensus       442 ~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~  476 (530)
                      .        +++.|...+...++-+..-|--+|..
T Consensus       251 ~--------~~~vL~e~~~D~~~vv~esc~valdm  277 (289)
T KOG0567|consen  251 D--------CVEVLKEYLGDEERVVRESCEVALDM  277 (289)
T ss_pred             H--------HHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            1        33556666665555554444444443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.53  E-value=0.015  Score=60.38  Aligned_cols=318  Identities=18%  Similarity=0.201  Sum_probs=178.1

Q ss_pred             HHHHHHHhcCCCChH-HHH-HHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH-
Q 009647          139 IPVLVQCLAFGSPDE-QLL-EAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR-  214 (530)
Q Consensus       139 v~~Lv~lL~~~~~~~-~~~-eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-  214 (530)
                      +|.|+..|...+... ..+ .+..+|..+|.... ....++ ..+..+-....+..+.+....++.+|.++........ 
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            477888887554321 334 48889999997643 222222 3444444444433456667777777777764332222 


Q ss_pred             ----HHHHhcCChhhhHhhcCC-----C--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------
Q 009647          215 ----NVLLSQGALPPLARMMLP-----N--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------  275 (530)
Q Consensus       215 ----~~~~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--------  275 (530)
                          ....+..++|.+.++...     .  +..+...+...+..+++.-++...      ..++..+..++.        
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q------~~~~~~~~~lf~~~~~~~~~  153 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ------QEILDELYSLFLSPKSFSPF  153 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHccccccCCC
Confidence                233344477777776542     1  256666677777666665322221      223333333332        


Q ss_pred             --c------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC--Cccccch
Q 009647          276 --R------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG--DSSTISD  345 (530)
Q Consensus       276 --~------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~--~~~~~~~  345 (530)
                        .      .......-...+++.+-....  ..  .....+..++.+...+.++..+..++++++-++..  +++....
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~--~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~  229 (415)
T PF12460_consen  154 QPSSSTISEQQSRLVILFSAILCSLRKDVS--LP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE  229 (415)
T ss_pred             CccccccccccccHHHHHHHHHHcCCcccC--cc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH
Confidence              0      111222223333333332111  00  11125556666654455566666777777766644  1111000


Q ss_pred             h-------------------------------cccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHH----
Q 009647          346 V-------------------------------LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH----  390 (530)
Q Consensus       346 ~-------------------------------i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~----  390 (530)
                      +                               +--|+......+..|+.+|.+  +.+...|+..+.-|....+..    
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~  307 (415)
T PF12460_consen  230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE  307 (415)
T ss_pred             HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence            0                               001111223567777888876  567788888888877653322    


Q ss_pred             ---------HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc
Q 009647          391 ---------KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS  461 (530)
Q Consensus       391 ---------~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~  461 (530)
                               .|.++.. ++|.|++-.+..+...+..-..||+++..+      .|.++  ....+  ..++|.|++-|..
T Consensus       308 ~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~------vP~~v--l~~~l--~~LlPLLlqsL~~  376 (415)
T PF12460_consen  308 NHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSHLLKN------VPKSV--LLPEL--PTLLPLLLQSLSL  376 (415)
T ss_pred             ccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHHHHhh------CCHHH--HHHHH--HHHHHHHHHHhCC
Confidence                     2334332 688888888877777888889999999874      24221  11112  3478999999999


Q ss_pred             CCHHHHHHHHHHHHHHHcc
Q 009647          462 ADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       462 ~d~~i~~~~L~~L~~il~~  480 (530)
                      +|+++...+|++|..++..
T Consensus       377 ~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  377 PDADVLLSSLETLKMILEE  395 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.043  Score=54.97  Aligned_cols=246  Identities=15%  Similarity=0.178  Sum_probs=163.6

Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC---------chhHHHHHhcCchHHHHHHHhc---CC--Cccchhhh
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALS---------NVATSLLVKSGVLQLLVERLAT---SN--SLQLLIPV  328 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~---------~~~~~~i~~~g~l~~Lv~lL~~---~~--~~~v~~~a  328 (530)
                      ...+++.|+.+|.+.+.+|...+.-.|..|++.+         ..-+.++++.++++.|++-+.+   +.  ...-...+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            6789999999999999999999999999999632         1346778888999998877642   11  12234567


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  406 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l  406 (530)
                      +..+-|++...+.....+.+      .|.+..|..-+...  -...+..|.-+++-+...+.+....+-..+++..+++-
T Consensus       203 L~vveNlv~~r~~~~~~~~e------~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~  276 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVE------QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ  276 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHH------hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence            88899999887777666653      46777766644322  22456677777777777666666666677888888877


Q ss_pred             h---cCCC------hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHH
Q 009647          407 L---STSP------FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELV  477 (530)
Q Consensus       407 L---~~~~------~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~i  477 (530)
                      +   ...+      .+.-..---+||.+...+           +....+....++....=+++. .......++.+|..+
T Consensus       277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-----------~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~a  344 (536)
T KOG2734|consen  277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-----------ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHA  344 (536)
T ss_pred             cchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-----------hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHH
Confidence            6   2222      233444555666665542           234455555555544444443 344456678888888


Q ss_pred             HccCCCCcchhHHHHhchHHHHHHHhc----------CCcHHHHHHHHHHHHhhcCCCC
Q 009647          478 LRGMPNHEGTKLVEREDGIDAMERFQF----------HENEDLRNMANGLVDKYFGEDY  526 (530)
Q Consensus       478 l~~~~~~~~~~~i~~~ggl~~L~~L~~----------~~~~~i~~~A~~il~~~f~~~~  526 (530)
                      +.+.+..++|..+.+.+|+..+-.+-.          -.-.+.-+..+.||-.+|..-+
T Consensus       345 m~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~  403 (536)
T KOG2734|consen  345 MFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD  403 (536)
T ss_pred             HhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence            766555567888889999998866533          1234555666777777766433

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.30  E-value=0.00078  Score=54.20  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC--CCChhHHHHHHHHHHHhhcCC
Q 009647          195 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       195 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~  252 (530)
                      ++..++..|+|+|..++..++.+.+.|+||.+++...  ..+|-+++.|+||+.|||.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n   61 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN   61 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence            4667899999999999999999999999999999765  457999999999999999874

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.27  E-value=0.025  Score=56.30  Aligned_cols=210  Identities=15%  Similarity=0.197  Sum_probs=147.7

Q ss_pred             hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC---chhhHHH-h-hchHHHHHHHhccCCHHHHHHHHH
Q 009647          213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK---PATELIK-V-DGLLDAILRHLKRADEELTTEVAW  287 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~v~-~-~~~l~~L~~lL~~~d~~v~~~a~~  287 (530)
                      ....+...+.+..|+..|..-+.+.++.++-.++++.+.....   |..+.+. . ..++..|+..-  +++++...+-.
T Consensus        68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~  145 (335)
T PF08569_consen   68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGD  145 (335)
T ss_dssp             HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHH
Confidence            3345667788889999998888999999999999999864332   3333332 1 23444444333  35677777777


Q ss_pred             HHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc
Q 009647          288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS  367 (530)
Q Consensus       288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~  367 (530)
                      .|..++. .+.....++....+..+.+.. ..++-++...|..++.-+.+.........+..-   -..++..+..+|.+
T Consensus       146 mlRec~k-~e~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---~d~ff~~~~~Ll~s  220 (335)
T PF08569_consen  146 MLRECIK-HESLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---YDRFFQKYNKLLES  220 (335)
T ss_dssp             HHHHHTT-SHHHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHCT-
T ss_pred             HHHHHHh-hHHHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHccC
Confidence            7777776 566677888888899999988 588889999999999998887665544444321   13577788999999


Q ss_pred             CcHhHHHHHHHHHHHHhcCCH--HHHHHHH-hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647          368 EHRVLKKEAAWVLSNIAAGSV--EHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       368 ~~~~i~~~A~~~Lsnl~~~~~--~~~~~li-~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      ++.-+|+.+...|+.|.....  ......+ +..-+..++.+|++.+..+|.||--+.--++.++
T Consensus       221 ~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  221 SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            999999999999999976421  2222223 3356888999999999999999999998888765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.26  E-value=0.0024  Score=51.37  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647          372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  451 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  451 (530)
                      .|+.++++|+.++.+-...+...++. ++|+++..+.+++..||..|+.+|.|++....         .+.+.+  =..+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---------~~~l~~--f~~I   69 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVAR---------GEILPY--FNEI   69 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---------HHHHHH--HHHH
Confidence            37788899999877665556655554 89999999999999999999999999985321         011121  2457


Q ss_pred             hHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647          452 LSGFIDLVRSADIEAARLGLQFMELVLR  479 (530)
Q Consensus       452 i~~L~~lL~~~d~~i~~~~L~~L~~il~  479 (530)
                      +..|+.++...|+.++. +.+.|.++++
T Consensus        70 F~~L~kl~~D~d~~Vr~-~a~~Ld~llk   96 (97)
T PF12755_consen   70 FDALCKLSADPDENVRS-AAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHcCCchhHHH-HHHHHHHHhc
Confidence            88899999988888665 4577887764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.26  E-value=0.037  Score=57.87  Aligned_cols=268  Identities=16%  Similarity=0.084  Sum_probs=164.3

Q ss_pred             HHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHh---------cCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHH
Q 009647          115 LRELRRLLSRFEFPPIETALKAGAIPVLVQCL---------AFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL  183 (530)
Q Consensus       115 ~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL---------~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L  183 (530)
                      +.+||-+ ++++. ..+.++....+..|..+-         ....++....||..||.|+...++..++.++  +..+.+
T Consensus         2 L~~LRiL-sRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRIL-SRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHH-ccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3444444 55543 234455556666666665         2333456778999999999999887777766  788999


Q ss_pred             HHhhcCC----CCHHHHHHHHHHHHhhcCCCchhHHHHHhc-CChhhhHhhcCC-----------------CChhHHHHH
Q 009647          184 IAHLGEK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-----------------NKGSTVRTA  241 (530)
Q Consensus       184 ~~lL~~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~lL~~-----------------~~~~~~~~a  241 (530)
                      +..|+..    .+.++.......|-=++...+..+..+++. +++..++..|..                 .+.....-+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999874    257788888888877777777788776655 777777765531                 123456677


Q ss_pred             HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc---------CCHHHHHHHHHHHHHhhcCCchh-------HH----
Q 009647          242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR---------ADEELTTEVAWVVVYLSALSNVA-------TS----  301 (530)
Q Consensus       242 ~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~---------~d~~v~~~a~~~L~~L~~~~~~~-------~~----  301 (530)
                      +..+.|+..........+   ..+.++.++.++..         +.......+..+|.++--.....       ..    
T Consensus       160 LKllFNit~~~~~~~~~~---~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~  236 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEE---FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP  236 (446)
T ss_pred             HHHHHHhhhccCcccchh---hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence            788888875532111101   23444444444321         12356777777777773211111       00    


Q ss_pred             HHHhcCchHHHHHHHhc----CC---CccchhhhHHHHhhhhcCCccccchhccc--------C--CCcchhhHHHHHHH
Q 009647          302 LLVKSGVLQLLVERLAT----SN---SLQLLIPVLRSLGNLVAGDSSTISDVLVP--------G--HGITDQVIAVLVKC  364 (530)
Q Consensus       302 ~i~~~g~l~~Lv~lL~~----~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~--------g--~~~~~~~l~~L~~l  364 (530)
                      ......++..|+.+|..    ..   -.+...|.+.+|.+++..+....+.+-..        .  .+....+-..|+++
T Consensus       237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL  316 (446)
T PF10165_consen  237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL  316 (446)
T ss_pred             CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence            00122345666666641    11   13567899999999998764332211100        0  00124567789999


Q ss_pred             hccCcHhHHHHHHHHHHHHhcCC
Q 009647          365 LKSEHRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       365 L~~~~~~i~~~A~~~Lsnl~~~~  387 (530)
                      +.+..+.++..+...+..+|..+
T Consensus       317 mt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  317 MTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             hCCCCchHHHHHHHHHHHHHhhh
Confidence            99988999999999998887654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.25  E-value=0.0099  Score=64.49  Aligned_cols=167  Identities=16%  Similarity=0.203  Sum_probs=127.4

Q ss_pred             cCCCChh-HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 009647          230 MLPNKGS-TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV  308 (530)
Q Consensus       230 L~~~~~~-~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~  308 (530)
                      +.+.+.. -..++=.+++++..|++         ....+|.+++.+...|.++..-+-.-|...+...++..  +.   +
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d---------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---a   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED---------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---A   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---H
Confidence            4444444 44455566788888853         24677888888888899998888777778887665221  11   3


Q ss_pred             hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH
Q 009647          309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV  388 (530)
Q Consensus       309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~  388 (530)
                      +..+..-+ .++++.++..|+|+++-+=.      ..++       ..+++++.+++.++++.||+.|+.++.++-.-++
T Consensus        94 vNti~kDl-~d~N~~iR~~AlR~ls~l~~------~el~-------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~  159 (757)
T COG5096          94 VNTIQKDL-QDPNEEIRGFALRTLSLLRV------KELL-------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK  159 (757)
T ss_pred             HHHHHhhc-cCCCHHHHHHHHHHHHhcCh------HHHH-------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH
Confidence            55666667 58999999999999997632      2333       3589999999999999999999999999976554


Q ss_pred             HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      +.   +.+.|.+..+..++.+.++.+..+|..+|..+..
T Consensus       160 ~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         160 DL---YHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             hh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            43   3466788889999999999999999999999865

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.22  E-value=0.093  Score=54.88  Aligned_cols=234  Identities=18%  Similarity=0.131  Sum_probs=146.2

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 009647          190 KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVD  264 (530)
Q Consensus       190 ~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~  264 (530)
                      .+++.+...|+.||+|+...++..|+.+.+.|..+.++..|+..     +.++.--....|.-++... +.....++...
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~-~~~~~~L~~e~  121 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALR-PDDRKKLIEEH  121 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-hhHHHHHHHHh
Confidence            36789999999999999999999999999999999999999864     5666666666666555432 33444555555


Q ss_pred             chHHHHHHHhc----------c-------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC--------
Q 009647          265 GLLDAILRHLK----------R-------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS--------  319 (530)
Q Consensus       265 ~~l~~L~~lL~----------~-------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--------  319 (530)
                      +++..+...|.          .       .+.+...+++..+.|++...+.... -...+.++.++..|...        
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~  200 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSP  200 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCC
Confidence            67776666553          1       1446788999999999865433222 11234455555544322        


Q ss_pred             CCccchhhhHHHHhhhhcCCccc-------cchhcccCCCcchhhHHHHHHHhccC-----c---HhHHHHHHHHHHHHh
Q 009647          320 NSLQLLIPVLRSLGNLVAGDSST-------ISDVLVPGHGITDQVIAVLVKCLKSE-----H---RVLKKEAAWVLSNIA  384 (530)
Q Consensus       320 ~~~~v~~~al~~L~nl~~~~~~~-------~~~~i~~g~~~~~~~l~~L~~lL~~~-----~---~~i~~~A~~~Lsnl~  384 (530)
                      +.......++.+|.|+--.....       ...+.-.|  .+...+..|+.+|...     +   ...-.-.+.+|.+++
T Consensus       201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~--~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG--DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC--CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence            12234556777777762111111       00000000  1334666777766431     1   134455666777777


Q ss_pred             cCCHHHHHHHHh----------------CCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          385 AGSVEHKQLIHS----------------SEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       385 ~~~~~~~~~li~----------------~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      ..+...++.+-.                ..+-..|++++.+..+.++..++..|..+|.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            765444443332                1245568999998888899989888888885

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.11  Score=57.65  Aligned_cols=322  Identities=15%  Similarity=0.121  Sum_probs=177.9

Q ss_pred             hHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 009647           89 TSSAVEELKS-AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA  167 (530)
Q Consensus        89 ~~~~~~~l~~-~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~  167 (530)
                      .+..+|.+.. ++.++++.|..++-.|++.+-++.++-+   ...+  ..+|...+.++...+++..=.-|+.+|..+|.
T Consensus       335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~  409 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELAL  409 (1133)
T ss_pred             cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence            3445565555 4457789999999999999999976654   2112  23455556655533323333468899999996


Q ss_pred             CChhhHHhhcCCcHHHHHhhcC-------CCCHHHHHHHHHHHHhhcCCCchh-HHHHHhcCChhh-hHhhcCCCChhHH
Q 009647          168 GKQEETKALLPALPLLIAHLGE-------KSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPP-LARMMLPNKGSTV  238 (530)
Q Consensus       168 ~~~~~~~~i~~~v~~L~~lL~~-------~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~-L~~lL~~~~~~~~  238 (530)
                      ..----..+...+|.+++-|..       +....||+.|++.++.++.-.... -+-++.. ..+. |...+-++....+
T Consensus       410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncR  488 (1133)
T KOG1943|consen  410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCR  488 (1133)
T ss_pred             cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHh
Confidence            5432233333577777776653       124578999887777777533221 1111111 1111 2223335677888


Q ss_pred             HHHHHHHHHhh-cCCCC-CchhhHH-----------------------HhhchHHHHH-HHh----ccCCHHHHHHHHHH
Q 009647          239 RTAAWALSNLI-KGPDP-KPATELI-----------------------KVDGLLDAIL-RHL----KRADEELTTEVAWV  288 (530)
Q Consensus       239 ~~a~~~L~nL~-~~~~~-~~~~~~v-----------------------~~~~~l~~L~-~lL----~~~d~~v~~~a~~~  288 (530)
                      +.|.-+|--.. |..+- .. .+++                       .-.+....++ .++    .+=|..++..++|+
T Consensus       489 RAAsAAlqE~VGR~~n~p~G-i~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a  567 (1133)
T KOG1943|consen  489 RAASAALQENVGRQGNFPHG-ISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA  567 (1133)
T ss_pred             HHHHHHHHHHhccCCCCCCc-hhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            88888876544 32211 10 0111                       0112222222 222    24478999999999


Q ss_pred             HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc-------cchhcccCCCcchhhHHHH
Q 009647          289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST-------ISDVLVPGHGITDQVIAVL  361 (530)
Q Consensus       289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~-------~~~~i~~g~~~~~~~l~~L  361 (530)
                      |..|+...+++    ...+.+++++... .+.+...+.-+.-+.|.++...-..       .+..+..    -...++.+
T Consensus       568 L~~Ls~~~pk~----~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~----l~~ii~~~  638 (1133)
T KOG1943|consen  568 LHKLSLTEPKY----LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG----LLSIIPPI  638 (1133)
T ss_pred             HHHHHHhhHHh----hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh----hhhhccHH
Confidence            99999755543    3456788888776 3666666655555555544221110       0111110    00112222


Q ss_pred             HHH-hccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          362 VKC-LKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       362 ~~l-L~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      ..- +..+ ..-++...+..+-++........+..+-.+.-..+.+.+.+++ .+|..|.|+++.+++
T Consensus       639 ~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  639 CDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence            221 1212 1245666777888887766555555444444455555565555 788899999988875

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.029  Score=58.79  Aligned_cols=220  Identities=15%  Similarity=0.141  Sum_probs=138.5

Q ss_pred             hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHH---HHHHHhhcCC--chhH
Q 009647          226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA---WVVVYLSALS--NVAT  300 (530)
Q Consensus       226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~---~~L~~L~~~~--~~~~  300 (530)
                      |..+..+.+..++.+|+-+|..|..+.  +-      ........++++.+++++|+..|.   |..+|..-.+  .+..
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc--cc------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            666666777888888888887777642  11      234456678889888889988874   5555555211  1111


Q ss_pred             HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHH
Q 009647          301 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL  380 (530)
Q Consensus       301 ~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~L  380 (530)
                      ..-....++..+.+.+ ...+..++..|..+||-+-.-+++.+++-++      ..++..+-+.=     .-.+..-...
T Consensus       275 e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd------KKlms~lRRkr-----~ahkrpk~l~  342 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLD------KKLMSRLRRKR-----TAHKRPKALY  342 (823)
T ss_pred             hhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHH------HHHhhhhhhhh-----hcccchHHHH
Confidence            1112234677777777 4678889999999999987766665554442      22333221111     0011111122


Q ss_pred             HHH--hcC-----------CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 009647          381 SNI--AAG-----------SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  447 (530)
Q Consensus       381 snl--~~~-----------~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  447 (530)
                      ++-  ..|           ..+.-..++.+|+--.++.-|.+.=.+||+.|+..++.++...   ++.+   .       
T Consensus       343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~FA---~-------  409 (823)
T KOG2259|consen  343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS---PGFA---V-------  409 (823)
T ss_pred             hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC---CCcH---H-------
Confidence            221  111           1223445788888888999998888899999999999998743   2322   1       


Q ss_pred             hcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          448 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       448 ~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                        .++..|+++++.....+...++.+|..|...
T Consensus       410 --~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  410 --RALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             --HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence              1346688999888888888888888887654

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.11  E-value=0.036  Score=53.24  Aligned_cols=220  Identities=16%  Similarity=0.163  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHhcCChhhHHhhc--C-CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHh-cCChhhhHhhc
Q 009647          156 LEAAWCLTNIAAGKQEETKALL--P-ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMM  230 (530)
Q Consensus       156 ~eA~~~L~nia~~~~~~~~~i~--~-~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~lL  230 (530)
                      .-|..|+.++.... +.+..+.  + .-..++.+++.+ ...+++...+.++.-+.. ++.+.+.+-. -..+.-|++++
T Consensus       167 lfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iV  244 (432)
T COG5231         167 LFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIV  244 (432)
T ss_pred             HHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888888653 3444443  2 445666777653 236788888777777776 4555533222 13466677777


Q ss_pred             CCC-ChhHHHHHHHHHHHhhcCCCCCch-hhHHHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcC-----------
Q 009647          231 LPN-KGSTVRTAAWALSNLIKGPDPKPA-TELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSAL-----------  295 (530)
Q Consensus       231 ~~~-~~~~~~~a~~~L~nL~~~~~~~~~-~~~v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~-----------  295 (530)
                      +.. ...+.+-++..+.|+|. +.|+.. ........+.|..-.++.  ..|+++..+.-..=+.|...           
T Consensus       245 k~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~  323 (432)
T COG5231         245 KERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL  323 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            654 67889999999999996 334332 222222334444333333  45666655443322222111           


Q ss_pred             ----------C---------chhHHHHHh--cCchHHHHHHHhcCCCcc-chhhhHHHHhhhhcCCccccchhcccCCCc
Q 009647          296 ----------S---------NVATSLLVK--SGVLQLLVERLATSNSLQ-LLIPVLRSLGNLVAGDSSTISDVLVPGHGI  353 (530)
Q Consensus       296 ----------~---------~~~~~~i~~--~g~l~~Lv~lL~~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~g~~~  353 (530)
                                +         ..+...+.+  ..++..|.++|+ ++++. ...-||.-|+.++...++....+.      
T Consensus       324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~------  396 (432)
T COG5231         324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAVLS------  396 (432)
T ss_pred             HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHHHH------
Confidence                      1         112233332  236778888885 66655 556889999999988877666555      


Q ss_pred             chhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          354 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       354 ~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      ..|+=..++.+++|+++.|+-+|..++..+..
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            46799999999999999999999999887654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.15  Score=58.54  Aligned_cols=302  Identities=16%  Similarity=0.132  Sum_probs=162.0

Q ss_pred             HHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChh
Q 009647          158 AAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS  236 (530)
Q Consensus       158 A~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~  236 (530)
                      ||.-+..|+...-+..+..+ ..||.|.++=-+ |+..|+..-..+..-+..|+...-+..+. .++.-|+.-+.+....
T Consensus       977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD-P~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen  977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD-PDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWR 1054 (1702)
T ss_pred             hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC-CcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHH
Confidence            44455555544333333333 378988888766 78889887777777777776655554443 4667777777788899


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHH---HHHHHHHHhhcC--Cc---hhHHHHHhcCc
Q 009647          237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTT---EVAWVVVYLSAL--SN---VATSLLVKSGV  308 (530)
Q Consensus       237 ~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~---~a~~~L~~L~~~--~~---~~~~~i~~~g~  308 (530)
                      +++.+|.+|..|.++.+.....+.+  ......+.+.+++=.+.++.   .++.+|+.|+-.  +.   ..-+.++ ..+
T Consensus      1055 VReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~i 1131 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DII 1131 (1702)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHH
Confidence            9999999999999985322111111  23333444444433344444   456666666531  11   1111111 123


Q ss_pred             hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh-----------HHHHHH
Q 009647          309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-----------LKKEAA  377 (530)
Q Consensus       309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~-----------i~~~A~  377 (530)
                      +|.|++-=.-+.-++++.-++.++-.++..........+       ...+|.|...++.-.+.           +..+|+
T Consensus      1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-------~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-------PKLIPLLLNAYSELEPQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred             HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-------hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHH
Confidence            333332100134567788889999998877766544433       35677777766554332           233333


Q ss_pred             HHHHH-HhcCCH--HHHHHHHh-------CCcHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 009647          378 WVLSN-IAAGSV--EHKQLIHS-------SEALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL  446 (530)
Q Consensus       378 ~~Lsn-l~~~~~--~~~~~li~-------~~~l~~Li~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l  446 (530)
                      -.+.- ++.++|  +-+..+++       ..++|.+.+++..+- -..+--++..++-++... ...-+|+     .   
T Consensus      1205 Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~-----s--- 1275 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPY-----S--- 1275 (1702)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcc-----h---
Confidence            33332 222222  11111111       135666666665432 234444555555554321 0001121     1   


Q ss_pred             HhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          447 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       447 ~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                        -..+..++-.++..++.+.+....+...++....
T Consensus      1276 --gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1276 --GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             --hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence              1245666777777777777766666666665543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.07  E-value=0.11  Score=56.98  Aligned_cols=376  Identities=13%  Similarity=0.081  Sum_probs=203.7

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI  184 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~  184 (530)
                      ..++..+..+...+-.+.+.-.    .....++++|.+.+++..+. +.++..|...+.++..-........-...+.++
T Consensus       248 d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~  322 (759)
T KOG0211|consen  248 DDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDDDVVKSLTESLV  322 (759)
T ss_pred             ccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence            3445566666665555422111    25667889999999887544 444444667777776322211111114677888


Q ss_pred             HhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 009647          185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVD  264 (530)
Q Consensus       185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~  264 (530)
                      +...+ ++..++....-...-++..-.+   ....-..+++...+++....+.+..++.-..-++...+.....+ +...
T Consensus       323 ~~~~d-~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~-i~~~  397 (759)
T KOG0211|consen  323 QAVED-GSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN-IPDS  397 (759)
T ss_pred             HHhcC-hhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc-cchh
Confidence            87776 5666655544333333321111   11122346667777777666666666665666665433212222 2245


Q ss_pred             chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647          265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS  344 (530)
Q Consensus       265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~  344 (530)
                      .++|.+-.+..+.+..+....+.....+..-.+  ....+ ....+.++..+ ....+.++....+.+..+-...+..-.
T Consensus       398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~  473 (759)
T KOG0211|consen  398 SILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGI  473 (759)
T ss_pred             hhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhc-chhhHHHHHhhHHHHHHHHhccCcccc
Confidence            678888888888888888777776666653222  00000 12344555555 355666666666666555433332211


Q ss_pred             hhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHH
Q 009647          345 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGN  424 (530)
Q Consensus       345 ~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~n  424 (530)
                      ...      ....+|.+..+-......++.+..|.+--++....   ..+++...-+.+...+.+....+++.|+..+.-
T Consensus       474 ~~~------s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~  544 (759)
T KOG0211|consen  474 STV------SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPA  544 (759)
T ss_pred             hhh------hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence            111      24578888887777778899999888888765321   233333344455555667777899998888888


Q ss_pred             hcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc
Q 009647          425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF  504 (530)
Q Consensus       425 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~  504 (530)
                      ++..-    |..    -++     ...++.++.+...+........+.++..+......     -+....-++.+..+..
T Consensus       545 l~~~~----G~~----w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-----ei~~~~Llp~~~~l~~  606 (759)
T KOG0211|consen  545 LVETF----GSE----WAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-----EITCEDLLPVFLDLVK  606 (759)
T ss_pred             HHHHh----Ccc----hhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-----HHHHHHHhHHHHHhcc
Confidence            77531    110    111     12344555554444444455555555544433222     1222233455555666


Q ss_pred             CCcHHHHHHHHHHHHhh
Q 009647          505 HENEDLRNMANGLVDKY  521 (530)
Q Consensus       505 ~~~~~i~~~A~~il~~~  521 (530)
                      ++.++|+-.+.+.+.++
T Consensus       607 D~vanVR~nvak~L~~i  623 (759)
T KOG0211|consen  607 DPVANVRINVAKHLPKI  623 (759)
T ss_pred             CCchhhhhhHHHHHHHH
Confidence            66666666555555544

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.98  E-value=0.6  Score=48.64  Aligned_cols=287  Identities=15%  Similarity=0.148  Sum_probs=158.3

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ..|.|-.-|++ .-.-|.-.++.++..++..+  .-...++ ..+..|-.+|+++....+-.|..+|..|+.-. |+   
T Consensus       265 ~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~-P~---  336 (898)
T COG5240         265 LRPFLNSWLSD-KFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY-PQ---  336 (898)
T ss_pred             HHHHHHHHhcC-cchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC-Cc---
Confidence            34445455544 34567777777777766533  1112222 24566777888889999999999999998542 32   


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc-chhhhHHHHhhhhc
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ-LLIPVLRSLGNLVA  337 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~-v~~~al~~L~nl~~  337 (530)
                       .|  .-+=+-+-.++.+.+..+-..|+-+|..  .|.++.+..++..  ++..+.-+  +++.. +...|++.|++...
T Consensus       337 -kv--~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~~--I~sfvhD~--SD~FKiI~ida~rsLsl~Fp  407 (898)
T COG5240         337 -KV--SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVNL--IPSFVHDM--SDGFKIIAIDALRSLSLLFP  407 (898)
T ss_pred             -ee--eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHHH--HHHHHHhh--ccCceEEeHHHHHHHHhhCc
Confidence             11  1233445566677776776666655532  3566666655432  44444433  23333 34577777776542


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      .   ...           ..+..|...|. .+....++.+.-+|+.+....|+....     ++..|+..+.+-++  -+
T Consensus       408 ~---k~~-----------s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~  466 (898)
T COG5240         408 S---KKL-----------SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQ  466 (898)
T ss_pred             H---HHH-----------HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hH
Confidence            2   111           24455555543 345577888888888887766554433     34456666654432  34


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchH
Q 009647          417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI  496 (530)
Q Consensus       417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl  496 (530)
                      .++..|+-+-... +...+|.   .+++++.+         -+--.+.-+...|+.+|...--...+....+.     ..
T Consensus       467 I~vrIL~iLG~Eg-P~a~~P~---~yvrhIyN---------R~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~  528 (898)
T COG5240         467 ITVRILGILGREG-PRAKTPG---KYVRHIYN---------RLILENNIVRSAAVQALSKFALNISDVVSPQS-----VE  528 (898)
T ss_pred             HHHHHHHHhcccC-CCCCCcc---hHHHHHHH---------HHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HH
Confidence            4666666654421 1111232   33443322         12223344555666766554322222111222     23


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          497 DAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       497 ~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      ..|..+.++.+++|+++|.-.++..
T Consensus       529 ~~lkRclnD~DdeVRdrAsf~l~~~  553 (898)
T COG5240         529 NALKRCLNDQDDEVRDRASFLLRNM  553 (898)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhh
Confidence            4577778888999999988777643

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.92  Score=50.27  Aligned_cols=308  Identities=18%  Similarity=0.204  Sum_probs=151.4

Q ss_pred             cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcC
Q 009647          129 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG  208 (530)
Q Consensus       129 ~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~  208 (530)
                      +.....+.=+++-++..++++- --++-.|+|.++.+++-+-..-.-...++....+.|.++++..|+-.|+-+|..+..
T Consensus       454 ~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~  532 (1010)
T KOG1991|consen  454 PYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS  532 (1010)
T ss_pred             chHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence            3333444334455555555432 235556999999999543322222224666677777744677899999999999988


Q ss_pred             CCchhHHHHHhc--CChhhhHhhcCCCC-----------------------hhHHHHHHHHHHHhhcC---CCCCchhhH
Q 009647          209 EGEEFRNVLLSQ--GALPPLARMMLPNK-----------------------GSTVRTAAWALSNLIKG---PDPKPATEL  260 (530)
Q Consensus       209 d~~~~r~~~~~~--g~i~~L~~lL~~~~-----------------------~~~~~~a~~~L~nL~~~---~~~~~~~~~  260 (530)
                      +.+.....+..+  +.++.|+++.+.-+                       .++..+.+.++..+...   .++......
T Consensus       533 ~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~  612 (1010)
T KOG1991|consen  533 NQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA  612 (1010)
T ss_pred             cchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence            655443333322  23334444443211                       23444555555555442   111111123


Q ss_pred             HHhhchHHHHHHHhcc-------------------------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHH
Q 009647          261 IKVDGLLDAILRHLKR-------------------------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVER  315 (530)
Q Consensus       261 v~~~~~l~~L~~lL~~-------------------------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~l  315 (530)
                      +...|++.++-.+|.+                         .-.++...++..+.+++...++..-.+  =|+++.+.+.
T Consensus       613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~  690 (1010)
T KOG1991|consen  613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEV  690 (1010)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHH
Confidence            3345655555544431                         122333334444444433221111111  1344555555


Q ss_pred             HhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc--HhHHHHHHHHHHHHhcCCHHHHHH
Q 009647          316 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH--RVLKKEAAWVLSNIAAGSVEHKQL  393 (530)
Q Consensus       316 L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~--~~i~~~A~~~Lsnl~~~~~~~~~~  393 (530)
                      +. .......+...-+|.|+++........--+.    ..-.+..+..+|.+.+  ..=...||..+.-+.-....++++
T Consensus       691 ~~-~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y----~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq  765 (1010)
T KOG1991|consen  691 FQ-DDGIDYFTDMMPALHNYVTYGTPSLLSNPDY----LQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQ  765 (1010)
T ss_pred             Hh-hhhHHHHHHHHHHHhhheeeCchhhhccchH----HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhh
Confidence            53 3445566677777777775443321110000    0123334444554432  122445666666554322223332


Q ss_pred             HHhCCcHHHHHHH----hcC--CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhh
Q 009647          394 IHSSEALALLLHL----LST--SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL  458 (530)
Q Consensus       394 li~~~~l~~Li~l----L~~--~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l  458 (530)
                           .+|.++.+    +..  .+...+..+..++.|...-      +|   ...++.|-+.|+...+..+
T Consensus       766 -----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyy------nP---~ltL~iLe~~~~~~~ff~~  822 (1010)
T KOG1991|consen  766 -----YIPLFLELALSRLTREVETSELRVMLLEVVINALYY------NP---KLTLGILENQGFLNNFFTL  822 (1010)
T ss_pred             -----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc------Cc---HHHHHHHHHcCCcccHHHH
Confidence                 24444443    333  4456777777776665542      23   4667888888887665544

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.38  Score=53.61  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=91.7

Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCC
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPK  255 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~  255 (530)
                      .++..|+.-|++ .+..|+-.|+..+|.++...| +..+.     +|...+.++... +......++.+|+.|+...--.
T Consensus       341 ~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  341 FVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHhccC-CcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            466667777776 678999999999999998665 22233     445566655543 4677779999999999753222


Q ss_pred             chhhHHHhhchHHHHHHHhccCC--------HHHHHHHHHHHHHhhcCCc-hhHHHHHhcCchHHH-HHHHhcCCCccch
Q 009647          256 PATELIKVDGLLDAILRHLKRAD--------EELTTEVAWVVVYLSALSN-VATSLLVKSGVLQLL-VERLATSNSLQLL  325 (530)
Q Consensus       256 ~~~~~v~~~~~l~~L~~lL~~~d--------~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~L-v~lL~~~~~~~v~  325 (530)
                      +  ..  ...++|.+++-+..++        ..|+..||..++.+++... ....-++. .+.+.| ...+ -.++..++
T Consensus       415 p--s~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~Al-FDrevncR  488 (1133)
T KOG1943|consen  415 P--SL--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVAL-FDREVNCR  488 (1133)
T ss_pred             h--HH--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHh-cCchhhHh
Confidence            2  22  2478888888776433        3578888877777776432 22222211 122222 2222 24666777


Q ss_pred             hhhHHHHhhhh
Q 009647          326 IPVLRSLGNLV  336 (530)
Q Consensus       326 ~~al~~L~nl~  336 (530)
                      ..|..|+-..+
T Consensus       489 RAAsAAlqE~V  499 (1133)
T KOG1943|consen  489 RAASAALQENV  499 (1133)
T ss_pred             HHHHHHHHHHh
Confidence            78877777665

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.87  E-value=0.055  Score=53.59  Aligned_cols=194  Identities=22%  Similarity=0.260  Sum_probs=118.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHh--cCC
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA--AGK  169 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii--~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia--~~~  169 (530)
                      ++|...+..+.......|..|+..+.+++...--+  +.+-  ...+++.+...++.+...+ +.-|+.++.-++  -|.
T Consensus        43 ~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~--d~v~~~~~tL~~~~~k~lkkg~~~E-~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   43 DKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP--DFVEDRRETLLDALLKSLKKGKSEE-QALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHhhhcCC
Confidence            45667776666667889999999999998765332  3332  2557888888898776533 344666555555  333


Q ss_pred             hhhHHhhc-CCcHHHHHhhcCCC-CHHHHHHHHHHHHhhcC---CCchhHHHHHhcCChhhh--HhhcC----------C
Q 009647          170 QEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWALGNVAG---EGEEFRNVLLSQGALPPL--ARMML----------P  232 (530)
Q Consensus       170 ~~~~~~i~-~~v~~L~~lL~~~~-~~~v~~~a~~~L~nla~---d~~~~r~~~~~~g~i~~L--~~lL~----------~  232 (530)
                      ......++ ...|.|.+.+.+.+ .+.+|..|+.+|+-++.   +.++.....++  .+..+  ....+          .
T Consensus       120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            33455555 58888988887643 46777888888877653   22222221111  11211  11111          1


Q ss_pred             CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          233 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       233 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      +++.+..+|+-+.+-|...-++....+.  ....+|.|..+|.++|.+|+..|-.+|.-|..
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~--~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDL--LEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2356777766555555533211111222  35789999999999999999999888776654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.82  E-value=0.8  Score=47.57  Aligned_cols=298  Identities=18%  Similarity=0.179  Sum_probs=170.9

Q ss_pred             CHHHHHHHHHHHHHHHcCCCCC----cHHHHHHcCCHHHHHHHhcCC----CC-hHHHHH-HHHHHHHHhcC-ChhhHHh
Q 009647          107 AMQKRVNALRELRRLLSRFEFP----PIETALKAGAIPVLVQCLAFG----SP-DEQLLE-AAWCLTNIAAG-KQEETKA  175 (530)
Q Consensus       107 d~~~~~~a~~~lr~lls~~~~~----~~~~ii~~g~v~~Lv~lL~~~----~~-~~~~~e-A~~~L~nia~~-~~~~~~~  175 (530)
                      +.+.....+.++.+++......    ......+..++|.+++.....    .. +....+ ++..+..+... +.+.-+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5666777888888887654322    334455666899998877422    11 112233 44455544433 2222333


Q ss_pred             hc-CCcHHHHH-----hhc--CC----CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHH
Q 009647          176 LL-PALPLLIA-----HLG--EK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAA  242 (530)
Q Consensus       176 i~-~~v~~L~~-----lL~--~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~  242 (530)
                      ++ .+...++.     -+.  .+    .......-...+++.+-.+..-.    -....+..++.+..+ .+...+..++
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~  211 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAAL  211 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            33 33443330     000  00    01122222334444443322110    111255566665543 4577788888


Q ss_pred             HHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccC----CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh
Q 009647          243 WALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRA----DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA  317 (530)
Q Consensus       243 ~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~----d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~  317 (530)
                      .+++.|.. +-+..  +.  ...++..+..-+ ...    ......-..|...-|.-..+...     ...+..|+.+|.
T Consensus       212 ~~la~LvN-K~~~~--~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~  281 (415)
T PF12460_consen  212 QLLASLVN-KWPDD--DD--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLS  281 (415)
T ss_pred             HHHHHHHc-CCCCh--hh--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhC
Confidence            88888884 31111  11  234555555444 222    23455566677666654322222     234567888773


Q ss_pred             cCCCccchhhhHHHHhhhhcCCccc-------------cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647          318 TSNSLQLLIPVLRSLGNLVAGDSST-------------ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  384 (530)
Q Consensus       318 ~~~~~~v~~~al~~L~nl~~~~~~~-------------~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~  384 (530)
                       +  +++-..|.++++-+....+..             .|.+.       ..++|.|++-....+...+..-..+|+++.
T Consensus       282 -~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-------~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll  351 (415)
T PF12460_consen  282 -S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-------TQVLPKLLEGFKEADDEIKSNYLTALSHLL  351 (415)
T ss_pred             -C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-------HHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence             3  567788899999888773332             23443       257888888887777678888899999999


Q ss_pred             cCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          385 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       385 ~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      .+-|..+-.---..++|.|++.|..++.+++..+..+|..+...
T Consensus       352 ~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  352 KNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            88765442221235899999999999999999999999999864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.75  E-value=0.07  Score=55.21  Aligned_cols=129  Identities=10%  Similarity=0.114  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647          152 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  231 (530)
Q Consensus       152 ~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~  231 (530)
                      +.++.|++++++.++..+. ..+.+-.+|..|-.+|++ +....|-.|+++|..++...|+.-   ..++  +-+-+++.
T Consensus       278 emV~lE~Ar~v~~~~~~nv-~~~~~~~~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~P~kv---~vcN--~evEsLIs  350 (898)
T COG5240         278 EMVFLEAARAVCALSEENV-GSQFVDQTVSSLRTFLKS-TRVVLRFSAMRILNQLAMKYPQKV---SVCN--KEVESLIS  350 (898)
T ss_pred             hhhhHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhhCCcee---eecC--hhHHHHhh
Confidence            4567899999998885541 112222477888888887 678899999999999997665421   1111  22333444


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647          232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  293 (530)
Q Consensus       232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  293 (530)
                      +.+-.+   +++++..|......+. .+-  .-..+|.+++=+.++-.-+..+|+..|+.+-
T Consensus       351 d~Nr~I---styAITtLLKTGt~e~-idr--Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~F  406 (898)
T COG5240         351 DENRTI---STYAITTLLKTGTEET-IDR--LVNLIPSFVHDMSDGFKIIAIDALRSLSLLF  406 (898)
T ss_pred             cccccc---hHHHHHHHHHcCchhh-HHH--HHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence            444333   4445555543221111 111  1133344443333333456677777766655

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.73  E-value=0.26  Score=54.21  Aligned_cols=364  Identities=17%  Similarity=0.159  Sum_probs=208.9

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh-cCCcHHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL-LPALPLL  183 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i-~~~v~~L  183 (530)
                      .+....+..|...+-.++...+.+-   =...-+.+.++......+. .+.+-.+.....++..-. . ... ...++.+
T Consensus       287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~-~v~~~~~~~~~~L~~~~~-~-~~~~~~~~~~~  360 (759)
T KOG0211|consen  287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSW-RVSYMVADKFSELSSAVG-P-SATRTQLVPPV  360 (759)
T ss_pred             cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhH-HHHHHHhhhhhhHHHHhc-c-ccCcccchhhH
Confidence            3344567777788877766544331   1123466777777764431 121222222222221100 0 000 1257777


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647          184 IAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  262 (530)
Q Consensus       184 ~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~  262 (530)
                      ..+++. ...+++..++.-...++.. +..++..+....++|.+-.++.+.+..++...+.....+.-- .|++  ..  
T Consensus       361 ~~l~~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~-~~k~--~t--  434 (759)
T KOG0211|consen  361 SNLLKD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI-LPKE--RT--  434 (759)
T ss_pred             HHHhcc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCcc-CCcC--cC--
Confidence            777776 4556666665555555532 223344455566678888888787777777766666555421 1111  11  


Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      ....+|.+...++..+++++.+..|.+..+-...+..--..+....++.++.+- ......++...++.+-.++....  
T Consensus       435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~--  511 (759)
T KOG0211|consen  435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG--  511 (759)
T ss_pred             ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh--
Confidence            357788889999999999999999988666543332222233445666666644 23345566666666665553322  


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc--CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY  420 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~--~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~  420 (530)
                       ..+++      ...-+.+...+.+.-..|++.|+..+.-++.  |..-.++     ..+|.++.....++...|...+.
T Consensus       512 -~~~~~------~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~  579 (759)
T KOG0211|consen  512 -VEFFD------EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLF  579 (759)
T ss_pred             -hHHhh------HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHH
Confidence             12221      2344444555555566888888888877764  3222222     25677777776667888888888


Q ss_pred             HHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHH
Q 009647          421 VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAME  500 (530)
Q Consensus       421 aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~  500 (530)
                      ++.-++...    |         +.+....+++.+.++...+.+.+...++..|..+......     -..+.-..+.++
T Consensus       580 si~~la~v~----g---------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~-----~~~~~~v~pll~  641 (759)
T KOG0211|consen  580 SIHELAEVL----G---------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE-----SVRDEEVLPLLE  641 (759)
T ss_pred             HHHHHHHHh----c---------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch-----HHHHHHHHHHHH
Confidence            877665321    2         2344455788999999999999999999999888764322     112223344455


Q ss_pred             HHhcCCcHHHHHH
Q 009647          501 RFQFHENEDLRNM  513 (530)
Q Consensus       501 ~L~~~~~~~i~~~  513 (530)
                      .|-.+++.+++-.
T Consensus       642 ~L~~d~~~dvr~~  654 (759)
T KOG0211|consen  642 TLSSDQELDVRYR  654 (759)
T ss_pred             HhccCcccchhHH
Confidence            5555555444433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.72  E-value=0.034  Score=50.40  Aligned_cols=92  Identities=25%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhc-hHHHH
Q 009647          192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG-LLDAI  270 (530)
Q Consensus       192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~-~l~~L  270 (530)
                      ++.+|..++-++|-+|.-.+..-     ...+|.+...|.++++.++++|+.+|+.|...+-       +...| .+..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-------ik~k~~l~~~~   68 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-------IKVKGQLFSRI   68 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-------eeehhhhhHHH
Confidence            47899999999999997554332     3457889999999999999999999999986531       21234 34888


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhhcC
Q 009647          271 LRHLKRADEELTTEVAWVVVYLSAL  295 (530)
Q Consensus       271 ~~lL~~~d~~v~~~a~~~L~~L~~~  295 (530)
                      +.++.++|++|+..|..++..+...
T Consensus        69 l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   69 LKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999874

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.70  E-value=0.0072  Score=48.59  Aligned_cols=91  Identities=18%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHH
Q 009647          326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH  405 (530)
Q Consensus       326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~  405 (530)
                      .-++.+|+.++.+-.......++       .++|+++..+.+++..||..||.+|.|++......+-.-+ ..+++.|.+
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~-------~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~k   75 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLD-------EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCK   75 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHH-------HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34555666665544444555553       5999999999999999999999999999865433222211 247889999


Q ss_pred             HhcCCChhHHHHHHHHHHHh
Q 009647          406 LLSTSPFDIKKEVAYVLGNL  425 (530)
Q Consensus       406 lL~~~~~~v~~eA~~aL~nl  425 (530)
                      ++.+.++.||..| +.|-++
T Consensus        76 l~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   76 LSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HHcCCchhHHHHH-HHHHHH
Confidence            9999999988766 555444

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.68  E-value=0.0013  Score=65.97  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=90.8

Q ss_pred             hchHHHHHHHhccCCHHHHHHHHHHHHHhhcC----Cch--hHHHHHhcCchHHHHHHHh--cCCCccchhhhHHHHhhh
Q 009647          264 DGLLDAILRHLKRADEELTTEVAWVVVYLSAL----SNV--ATSLLVKSGVLQLLVERLA--TSNSLQLLIPVLRSLGNL  335 (530)
Q Consensus       264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----~~~--~~~~i~~~g~l~~Lv~lL~--~~~~~~v~~~al~~L~nl  335 (530)
                      ..+...++..|.+..-..+..++|+++++++.    .+.  ..+.-+..-.+.+++..-.  ...+..|...+.++|||+
T Consensus       432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl  511 (728)
T KOG4535|consen  432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL  511 (728)
T ss_pred             HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence            35555566666655567899999999999862    111  1111111112222222211  234567889999999998


Q ss_pred             hcCCccccchhcccCCC-cchhhHHHHHHH-hccCcHhHHHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHh-cCCC
Q 009647          336 VAGDSSTISDVLVPGHG-ITDQVIAVLVKC-LKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLL-STSP  411 (530)
Q Consensus       336 ~~~~~~~~~~~i~~g~~-~~~~~l~~L~~l-L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~l-i~~~~l~~Li~lL-~~~~  411 (530)
                      ...    .|.++.+|-. ...+.+..+... .......||-+||++++|+..+..--.+.. ....+++.|..++ ++.+
T Consensus       512 lQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N  587 (728)
T KOG4535|consen  512 LQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN  587 (728)
T ss_pred             HHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence            733    2333333200 011122222211 122355899999999999987542211111 1223577788877 5789


Q ss_pred             hhHHHHHHHHHHHhcC
Q 009647          412 FDIKKEVAYVLGNLCV  427 (530)
Q Consensus       412 ~~v~~eA~~aL~nl~~  427 (530)
                      ++||..|+.+|.--..
T Consensus       588 FKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  588 FKVRIRAAAALSVPGK  603 (728)
T ss_pred             ceEeehhhhhhcCCCC
Confidence            9999999999876543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.53  E-value=0.038  Score=55.89  Aligned_cols=184  Identities=17%  Similarity=0.164  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcC---CCCCchhhHHHh-hchHH
Q 009647          193 SPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG---PDPKPATELIKV-DGLLD  268 (530)
Q Consensus       193 ~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---~~~~~~~~~v~~-~~~l~  268 (530)
                      .-++..|..+++-+.-+..--.+......+...++..|.+.....+..++|+++|+...   +-|.+....-.. .-.+.
T Consensus       405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~  484 (728)
T KOG4535|consen  405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL  484 (728)
T ss_pred             HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence            34667777777777664333334444555666677777777778899999999998752   223221111011 11222


Q ss_pred             HHHHHhc---cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-------CchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          269 AILRHLK---RADEELTTEVAWVVVYLSALSNVATSLLVKS-------GVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       269 ~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-------g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      .+.+.-.   -....|..++..+|.++..    ..+.+.+.       |....+...........|+.+||.++||+..+
T Consensus       485 ~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  485 KMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence            2332222   2235688899999998875    12222221       22222221111234568899999999999977


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhc
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~  385 (530)
                      ..-..+..-     +-..+++.|..++. +.+.+||..|+.+|+--..
T Consensus       561 ~a~~lq~~~-----wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  561 PALPLQTAP-----WASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             ccccccCCC-----chHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            644222211     12357888888885 5677999999999986643

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.43  E-value=0.25  Score=53.95  Aligned_cols=228  Identities=14%  Similarity=0.071  Sum_probs=145.7

Q ss_pred             HhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHh
Q 009647          185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKV  263 (530)
Q Consensus       185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~  263 (530)
                      ..|..+..|.+.-.+.|+++..+........ +. .-.+...+..+. +..+.++-.|+.+++..|.   ++.....  .
T Consensus       456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~---~~vl~~~--~  528 (1005)
T KOG2274|consen  456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQ-LL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK---VKVLLSL--Q  528 (1005)
T ss_pred             hhcccccCHHHHHHHHHHHHHHHhhhccchh-HH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC---ceecccc--c
Confidence            3344445666667999999977652111111 11 112333444444 3456667777777777773   3443333  3


Q ss_pred             hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccc
Q 009647          264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      .+++..|.++......++..-...+|+..+.-+++.. +..+..++|..+.++.. +++|.+...+-.++-.++...+.+
T Consensus       529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~  607 (1005)
T KOG2274|consen  529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY  607 (1005)
T ss_pred             hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence            4677777888877888999999999999998666544 44567788888777653 456766666766666666432222


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCc----HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKE  417 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~----~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~e  417 (530)
                      -. +       ....+|.|++.|..+.    .....-|+-+|..+..+.+.-....+-.-++|++.++. +++|..+-..
T Consensus       608 g~-m-------~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~  679 (1005)
T KOG2274|consen  608 GP-M-------QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQN  679 (1005)
T ss_pred             cc-h-------HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHh
Confidence            11 1       2358999999998765    56677788888888777554444444444789999876 6666677777


Q ss_pred             HHHHHHHhcCC
Q 009647          418 VAYVLGNLCVS  428 (530)
Q Consensus       418 A~~aL~nl~~~  428 (530)
                      |-.+|..+...
T Consensus       680 ~~EcLra~Is~  690 (1005)
T KOG2274|consen  680 ATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHHhc
Confidence            77777766553

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.42  E-value=0.013  Score=47.25  Aligned_cols=58  Identities=17%  Similarity=0.316  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh--cCCChhHHHHHHHHHHHhcCCC
Q 009647          372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL--~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      +|.....+|+|++..++.....+.+.|++|.+++..  ...+|-+++-|.|+|.|++.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n   61 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN   61 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence            467788999999999988888899999999999886  4567889999999999999853

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=1.5  Score=49.70  Aligned_cols=231  Identities=13%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhcCchH
Q 009647          232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSLLVKSGVLQ  310 (530)
Q Consensus       232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l~  310 (530)
                      +.+..++.-+...|..++..+......+. ....+...|..-+++.+...+...+.||..|.+..+ +....+. . .++
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q-~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQ-RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHH
Confidence            34788999999999999876321111100 112344445555556677788899999998887655 3333332 2 234


Q ss_pred             HHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc----hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647          311 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT----DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       311 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~----~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~  386 (530)
                      -++-.+ +..+...+..|..+|-.|..     ++...+.|....    ..+++.+..-+-.....+....+.++..+...
T Consensus       742 EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  742 EVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            333333 45566667777777776662     111122111000    12344444333333333333324455544432


Q ss_pred             CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHH
Q 009647          387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA  466 (530)
Q Consensus       387 ~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i  466 (530)
                      .......-.=.+++..+.-.|.+++.++++.|+..+.-++..-      |.   . +-.-....+++.+..+++.....+
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~------pe---~-~l~~~~~~LL~sll~ls~d~k~~~  885 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF------PE---E-CLSPHLEELLPSLLALSHDHKIKV  885 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC------CH---H-HHhhhHHHHHHHHHHHHHhhhHHH
Confidence            1111111111234556666778999999999999999998742      31   1 111112236788888888777888


Q ss_pred             HHHHHHHHHHHHccC
Q 009647          467 ARLGLQFMELVLRGM  481 (530)
Q Consensus       467 ~~~~L~~L~~il~~~  481 (530)
                      +.++...|+.+++..
T Consensus       886 r~Kvr~LlekLirkf  900 (1176)
T KOG1248|consen  886 RKKVRLLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888888887654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=1.5  Score=47.21  Aligned_cols=291  Identities=12%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             cCCHHHHHHHhc-CC----C-ChHHHHH-HHHHHHHHhc--CChhhHHhhcC--CcHHHHHhhcCCCCHHHHHHHHHHHH
Q 009647          136 AGAIPVLVQCLA-FG----S-PDEQLLE-AAWCLTNIAA--GKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALG  204 (530)
Q Consensus       136 ~g~v~~Lv~lL~-~~----~-~~~~~~e-A~~~L~nia~--~~~~~~~~i~~--~v~~L~~lL~~~~~~~v~~~a~~~L~  204 (530)
                      .|+++.++..|. +.    + +...|.| |.+.+.++.+  .......-+++  .++.++..+++ +.-=++.+|+..+.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHH
Confidence            689999999994 21    1 1234555 7788888876  22222333332  56666666666 55568899999999


Q ss_pred             hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh---ccCCHHH
Q 009647          205 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL---KRADEEL  281 (530)
Q Consensus       205 nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL---~~~d~~v  281 (530)
                      .+.   .++++..+-..+.+....++++.+..+.-.|+-++.-+.++....   +.+ .+.+.+.+-++|   +.-+.++
T Consensus       486 ~~e---eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h---~k~-sahVp~tmekLLsLSn~feiD~  558 (970)
T COG5656         486 TIE---EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSH---EKF-SAHVPETMEKLLSLSNTFEIDP  558 (970)
T ss_pred             HHH---HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhh---HHH-HhhhhHHHHHHHHhcccccchH
Confidence            984   456666676677788888888888889999999998887664221   122 223333333343   3333444


Q ss_pred             HHHHHHHH-HHhhcCCchhHHHHHhcCchHHHHHHHhcC--CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH
Q 009647          282 TTEVAWVV-VYLSALSNVATSLLVKSGVLQLLVERLATS--NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI  358 (530)
Q Consensus       282 ~~~a~~~L-~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l  358 (530)
                      ...+...+ .+.++.-......+. ..++...+++....  ++++.-          ...++.+   +..      .|++
T Consensus       559 LS~vMe~fVe~fseELspfa~eLa-~~Lv~qFlkiaq~l~ens~d~~----------s~vDDKq---maa------sGiL  618 (970)
T COG5656         559 LSMVMESFVEYFSEELSPFAPELA-GSLVRQFLKIAQSLLENSSDTS----------SVVDDKQ---MAA------SGIL  618 (970)
T ss_pred             HHHHHHHHHHHhHHhhchhHHHHH-HHHHHHHHHHHHHHHcCCcccc----------ccccHHH---HHH------HHHH
Confidence            44443332 222211000111110 01112111111100  000000          0001111   111      2566


Q ss_pred             HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 009647          359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL  438 (530)
Q Consensus       359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~  438 (530)
                      ..+..++-+-+.                .+...+.+ .....|.+--+|.+.-.+.-.||+..|-+.+...         
T Consensus       619 ~T~~smiLSlen----------------~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---------  672 (970)
T COG5656         619 RTIESMILSLEN----------------RPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS---------  672 (970)
T ss_pred             HHHHHHHHhccc----------------chHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---------
Confidence            666555433211                11222222 2224555556677777888899998887765421         


Q ss_pred             HHHHHHHHHhcCChHHHHhhhccCCH-HHHHHHHHHHHHHHccCCC
Q 009647          439 IQEHLVSLVGRGCLSGFIDLVRSADI-EAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       439 ~~~~~~~l~~~g~i~~L~~lL~~~d~-~i~~~~L~~L~~il~~~~~  483 (530)
                        ..+ .=+.-|+.+.+.+++...++ .-...+..++.|++..+.+
T Consensus       673 --keI-~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~  715 (970)
T COG5656         673 --KEI-EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT  715 (970)
T ss_pred             --HHh-hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence              001 11233556666666666664 4456677889999887643

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.29  E-value=0.32  Score=53.18  Aligned_cols=274  Identities=15%  Similarity=0.116  Sum_probs=149.6

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC
Q 009647          143 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG  221 (530)
Q Consensus       143 v~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g  221 (530)
                      +..+..+.++-++..|..+++-.++  ........ +.+..|+++... .+.++--..+-+|+..+.-+++... -.+.-
T Consensus       496 v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~a-s~~sk  571 (1005)
T KOG2274|consen  496 VNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAA-SMESK  571 (1005)
T ss_pred             HHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhh-hhhcc
Confidence            3344433434444556666666662  11222222 356666776665 5678888889999999987666543 33445


Q ss_pred             ChhhhHhhcC--CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCC----HHHHHHHHHHHHHhhcC
Q 009647          222 ALPPLARMML--PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD----EELTTEVAWVVVYLSAL  295 (530)
Q Consensus       222 ~i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~L~~~  295 (530)
                      +.|.++.+..  +.++.+...+--++-.|+.......  .+  ....+|.+++.+..++    .....-++-.|..+.++
T Consensus       572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g--~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~  647 (1005)
T KOG2274|consen  572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG--PM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN  647 (1005)
T ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc--ch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence            6666666543  4577776666666666665321111  12  3578999999998665    34455555555555554


Q ss_pred             Cc-hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcc-cCCCcchhhHHHHHHHhccCcH-hH
Q 009647          296 SN-VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV-PGHGITDQVIAVLVKCLKSEHR-VL  372 (530)
Q Consensus       296 ~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~~~~~~~l~~L~~lL~~~~~-~i  372 (530)
                      .+ +-.+.++ .-++|.+.+....+++......+-.||..+...+.+|...--+ .|+. --.++.++.+||+.... ..
T Consensus       648 tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLLdp~~sds~  725 (1005)
T KOG2274|consen  648 TPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLLDPETSDSA  725 (1005)
T ss_pred             CCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHcCCccchhH
Confidence            33 3333333 3467777777766677788888888888888776555433221 1210 01356677777764322 22


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcC
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~  427 (530)
                      -..+-..+..|+.+-......-++. ++..++.-| +-....+-..-+.+++.+..
T Consensus       726 a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsLi~VfahL~~  780 (1005)
T KOG2274|consen  726 AAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSLIMVFAHLVH  780 (1005)
T ss_pred             HHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence            2233333344433322222221111 233333333 33445555666666666654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.17  Score=54.00  Aligned_cols=157  Identities=12%  Similarity=0.107  Sum_probs=104.2

Q ss_pred             hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009647          224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSL  302 (530)
Q Consensus       224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~  302 (530)
                      +.+-+++.+.++-++...++++.--..+..         ..+++..|++. .++.+.+|+..|.-+|+.++..+++    
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg---------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG---------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC---------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh----
Confidence            334456666777777777777654333321         23455556655 5567889999999999999875543    


Q ss_pred             HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647          303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  382 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn  382 (530)
                           .++..|.+|..+-++.|+.-+..+||-.|.|+...             .++..|-.+..+...-||+.|+.+++-
T Consensus       589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------------eAi~lLepl~~D~~~fVRQgAlIa~am  650 (929)
T KOG2062|consen  589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------------EAINLLEPLTSDPVDFVRQGALIALAM  650 (929)
T ss_pred             -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------------HHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence                 36777888877789999999999999888877533             255556666677777899999999998


Q ss_pred             HhcC-CHHHHHHHHhCCcHHHHHHHhcCCChh
Q 009647          383 IAAG-SVEHKQLIHSSEALALLLHLLSTSPFD  413 (530)
Q Consensus       383 l~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~  413 (530)
                      |... ++..+..+  .++...+.+++.+...+
T Consensus       651 Im~Q~t~~~~pkv--~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  651 IMIQQTEQLCPKV--NGFRKQLEKVINDKHED  680 (929)
T ss_pred             HHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence            7643 32222111  13455566666544433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.22  E-value=0.026  Score=61.33  Aligned_cols=149  Identities=13%  Similarity=0.170  Sum_probs=109.0

Q ss_pred             hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh--cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647          264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS  341 (530)
Q Consensus       264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  341 (530)
                      ..++|.|++.+...+......-.-+|+++..+-+.  +.+..  ..++|.|++.| +-++..++..+++++.-+....+.
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence            57889999999877777888888888888875443  22222  34677788877 578999999999999988876655


Q ss_pred             ccchhcccCCCcchhhHHHHHHHhccCc---HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647          342 TISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  418 (530)
Q Consensus       342 ~~~~~i~~g~~~~~~~l~~L~~lL~~~~---~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA  418 (530)
                      ....-++       .++|.+..+=.+.+   ..+|..|..++..|+..-|...-.-..-.++..|+..|.++...||++|
T Consensus       943 L~t~~~~-------Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen  943 LQTEHLS-------TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred             cchHHHh-------HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence            4444443       48888888766655   4789999999999988433222222233477788888999999999999


Q ss_pred             HHHH
Q 009647          419 AYVL  422 (530)
Q Consensus       419 ~~aL  422 (530)
                      +.+=
T Consensus      1016 v~tR 1019 (1030)
T KOG1967|consen 1016 VDTR 1019 (1030)
T ss_pred             HHHh
Confidence            8763

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.21  E-value=0.013  Score=48.47  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHh-ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          355 DQVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       355 ~~~l~~L~~lL-~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      ..++..|+.+| .+.++.+..-||.=|+.++...|..+..+-+.|+=..++.++.+++++|+++|+.|+.-+.
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            35889999999 4557888899999999999988887777777899999999999999999999999987664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.20  E-value=2.1  Score=45.18  Aligned_cols=283  Identities=19%  Similarity=0.185  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhh
Q 009647          108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL  187 (530)
Q Consensus       108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL  187 (530)
                      ...+..|+..+++.+...+-.++..     +....-.++....+++.+..+...|..+..++.....   +.=..+...+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~---~~R~~fF~~I   75 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG---LMRAEFFRDI   75 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH---HHHHHHHHHH
Confidence            4567778888888766544332221     3334445666555666655667777777755443111   0001233333


Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC---------------------------hhHHHH
Q 009647          188 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK---------------------------GSTVRT  240 (530)
Q Consensus       188 ~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~---------------------------~~~~~~  240 (530)
                      ..+..++....-+-+|..+..++.+.  ..++.++.|.|...+....                           ......
T Consensus        76 ~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (464)
T PF11864_consen   76 SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD  153 (464)
T ss_pred             hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence            44334443444455555555566554  2367778888877764210                           111122


Q ss_pred             HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchH-----HHHH
Q 009647          241 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ-----LLVE  314 (530)
Q Consensus       241 a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~-----~Lv~  314 (530)
                      ..-.+.|+.+........+.  ..+.+..++.+-. ..+++....++..+           ..++..|.+|     .++.
T Consensus       154 ll~~l~nviKfn~~~l~e~~--i~~lv~~i~~iC~~Ts~~~di~~~L~vl-----------daii~y~~iP~~sl~~~i~  220 (464)
T PF11864_consen  154 LLQFLVNVIKFNFNYLDEDE--ISSLVDQICTICKSTSSEDDIEACLSVL-----------DAIITYGDIPSESLSPCIE  220 (464)
T ss_pred             HHHHHHHHHhcCCCCCCHHH--HHHHHHHHHHHHhccCcHHHHHHHHHHH-----------HHHHHcCcCChHHHHHHHH
Confidence            22222233322111111111  1223333333221 11122222222222           2233333332     3444


Q ss_pred             HHhc-CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc------CcHhHHHHHHHHHHHHhcCC
Q 009647          315 RLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       315 lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~------~~~~i~~~A~~~Lsnl~~~~  387 (530)
                      .|.. ++..+...++-+++.|++...-.             ...+..|..+|..      .+..+.+.|...+..+..+.
T Consensus       221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~  287 (464)
T PF11864_consen  221 VLCSIVNSVSLCKPSWRTMRNLLKSHLG-------------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS  287 (464)
T ss_pred             HHhhHhcccccchhHHHHHHHHHcCccH-------------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence            4431 23335667888888888854321             2366778888832      23467789999999988776


Q ss_pred             HHHHHHHHhC---CcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          388 VEHKQLIHSS---EALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       388 ~~~~~~li~~---~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .++...-+..   -++|.+...++.++..+-.+....+.++.
T Consensus       288 ~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  288 GEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             ccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            3322222222   27888999999888888888888888887

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.31  Score=52.48  Aligned_cols=65  Identities=22%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             hHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .+..+...+-=.+..+|.+|.-++.++.++++....     .+.-.|.+.+.+.+.++|..|..+|.++-
T Consensus       467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            344444444445678899999999999866543222     23445667778899999999999999986

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.10  E-value=0.83  Score=50.79  Aligned_cols=249  Identities=17%  Similarity=0.195  Sum_probs=151.2

Q ss_pred             hhchHHHHHHHhcc-----CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh---cCCC----ccchhhhHH
Q 009647          263 VDGLLDAILRHLKR-----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---TSNS----LQLLIPVLR  330 (530)
Q Consensus       263 ~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~---~~~~----~~v~~~al~  330 (530)
                      +.|++..++.++.+     .+.+.....+..|.+++. -..+.+.+++.|+++.|+..|.   ..+.    ..+....+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            45777777777763     345677777888888886 5778888999999999988774   2323    456666777


Q ss_pred             HHhhhhcCCccccchh----ccc-CC-CcchhhHHHHHHHhccC----cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcH
Q 009647          331 SLGNLVAGDSSTISDV----LVP-GH-GITDQVIAVLVKCLKSE----HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL  400 (530)
Q Consensus       331 ~L~nl~~~~~~~~~~~----i~~-g~-~~~~~~l~~L~~lL~~~----~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l  400 (530)
                      .+.-+...........    ... |. .-...-+..|+..+.+.    ++.+....+.+|.+++.|..+..+.++++  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            7776665433211100    000 00 00123466666666554    57899999999999999999999998874  3


Q ss_pred             HHHHHHhcCC---ChhHHHHHHHHHHHhcCCCCC-CCCCchhHHHHHHHHHhcCChHHHHhhhccCC--------HHHH-
Q 009647          401 ALLLHLLSTS---PFDIKKEVAYVLGNLCVSPTE-GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--------IEAA-  467 (530)
Q Consensus       401 ~~Li~lL~~~---~~~v~~eA~~aL~nl~~~~~~-~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--------~~i~-  467 (530)
                      .+.+++=..+   ..+- ...+.+++.++.+-.. ..|     ..-...+++.|++...++.|...-        ++.. 
T Consensus       272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G-----~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~  345 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNG-----NRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKE  345 (802)
T ss_pred             HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCch-----HHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence            4443422111   1111 1224455555543211 112     244567889999998888876532        2222 


Q ss_pred             -------HHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcC
Q 009647          468 -------RLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       468 -------~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~f~  523 (530)
                             ..+|..|.-+....   ...+.....+++..|..|-. ....+|-..|..+|+.+=+
T Consensus       346 ~l~~psLp~iL~lL~GLa~gh---~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  346 FLSRPSLPYILRLLRGLARGH---EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HhcCCcHHHHHHHHHHHHhcC---HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                   23555555554432   22344455677877777744 3477899999999986544

>PRK14707 hypothetical protein; Provisional

Probab=96.04  E-value=5.2  Score=48.32  Aligned_cols=385  Identities=15%  Similarity=0.100  Sum_probs=216.6

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL  182 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~-~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~  182 (530)
                      ..+.....+|+..+..-+.... .+.++ ...--+..|+..++ ..++...+..+....+.++.++ .....+- .+|..
T Consensus       133 ~~~~~~c~~a~a~i~~~~~~~~-~~~~~-l~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~  209 (2710)
T PRK14707        133 NLDSGRCERAVARLARHLRRED-KARQT-LNAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAMDAQGVAT  209 (2710)
T ss_pred             CCCchHHHHHHHHHHHHhcccc-chhhh-hccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhcccchHHHHH
Confidence            3455556666666655544332 22221 12234555666554 3444445444556666666654 3333333 37777


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHH-HhhcCCCCCchhhHH
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELI  261 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~v  261 (530)
                      ++.-++..++..-..+|+..|.-...+....+..+-..|+-..|-.+-+=++....++++.++. .+...  +.- +..+
T Consensus       210 ~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~--~~l-~~al  286 (2710)
T PRK14707        210 VLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD--PGL-RKAL  286 (2710)
T ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh--HHH-HHhc
Confidence            7887777665555566666665444434566666666665555555555567667777766665 45433  222 2222


Q ss_pred             HhhchHHHHHHHhccCCHHHHHHHHHHHH-HhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647          262 KVDGLLDAILRHLKRADEELTTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  340 (530)
                      ....+-..|-.+-+.+|..+-..++..|. .|.+ +.+..+.+ +.-.+...++.|.+=++..+...|..+|..=...++
T Consensus       287 ~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~  364 (2710)
T PRK14707        287 DPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADP  364 (2710)
T ss_pred             CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH
Confidence            22333444445555777776666655554 4443 44444333 444566667777655666666666666655554554


Q ss_pred             cccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          341 STISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       341 ~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                      ...+.+       +..++...++-|+ =++..+...|+..|.-=..++.+..+.+-..|+-..|-.+-+.++..+...|+
T Consensus       365 ~l~~~l-------~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa  437 (2710)
T PRK14707        365 ELRKDL-------EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAV  437 (2710)
T ss_pred             hhhccc-------chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHH
Confidence            444433       1234444455444 34555566666666555556667666665555444444444778989998888


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHH
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM  499 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L  499 (530)
                      .+|.--..+.          .+-++.|--.++...|-.+-+.+|..+...+.+.|..=+...  ...++.+.-.+....|
T Consensus       438 ~~lA~~la~d----------~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~--~~l~~a~~~q~~~~~L  505 (2710)
T PRK14707        438 SALAGRLAHD----------TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHE--RRLRKALKPQEVVIAL  505 (2710)
T ss_pred             HHHHHHHhcc----------HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccc--HHHHhhcCHHHHHHHH
Confidence            8886655432          133444444566666666777899998887777776544322  1234445555556667


Q ss_pred             HHHhcCCcHHHHHHHHH
Q 009647          500 ERFQFHENEDLRNMANG  516 (530)
Q Consensus       500 ~~L~~~~~~~i~~~A~~  516 (530)
                      .-|...++...+..|..
T Consensus       506 ~aLSK~Pd~~~c~~A~~  522 (2710)
T PRK14707        506 HSLSKWPDTPICAEAAS  522 (2710)
T ss_pred             HHhhcCCCcHHHHHHHH
Confidence            77788888777766543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.02  E-value=0.11  Score=46.96  Aligned_cols=92  Identities=18%  Similarity=0.216  Sum_probs=73.3

Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                      ++.||..++-+++.++...+..+..     .+|.+...|.++++.||+.|+.+|+++....               ++.-
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---------------~ik~   60 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILED---------------MIKV   60 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---------------ceee
Confidence            4689999999999998766554433     5788999999999999999999999997631               1222


Q ss_pred             cCCh-HHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          449 RGCL-SGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       449 ~g~i-~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      .|-+ ..++.+|..+|+++...|..++..+...
T Consensus        61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            2333 7788888999999999999999988765

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=1  Score=52.16  Aligned_cols=292  Identities=17%  Similarity=0.139  Sum_probs=144.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHH-hc-CCCChHHHHH----HHHHHHHHhcC-
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQC-LA-FGSPDEQLLE----AAWCLTNIAAG-  168 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~l-L~-~~~~~~~~~e----A~~~L~nia~~-  168 (530)
                      +..++..+.+..--++..++-+|+.++...+.   +.+++  -+|.+-.. ++ .||-.+-.++    ++.+|+.++-. 
T Consensus      1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~---~~~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPF---DQVKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHcCCCh---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34456666777788999999999999876433   44443  23333322 22 1233344454    45566666521 


Q ss_pred             ----ChhhHHhhc-CCcHHHHH--hhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHH-H
Q 009647          169 ----KQEETKALL-PALPLLIA--HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR-T  240 (530)
Q Consensus       169 ----~~~~~~~i~-~~v~~L~~--lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~-~  240 (530)
                          +....+.++ .++|.|+.  .+ + .-.+++.-++.++..++..++..-.- .-...||.|+.....-.+.+.- .
T Consensus      1116 ~d~~~~~~~~~~l~~iLPfLl~~gim-s-~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIM-S-KVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred             cccCCcccHHHHHHHHHHHHhccCcc-c-chHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHHHHHH
Confidence                111122233 35666663  23 2 56899999999999998754331100 0112455555555433322222 1


Q ss_pred             HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-----hhHHHHH-----h-----
Q 009647          241 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-----VATSLLV-----K-----  305 (530)
Q Consensus       241 a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-----~~~~~i~-----~-----  305 (530)
                      ++.+ .|.-...-...........+...++-.++.+-|..+.++..--+..+.+++-     ..+..++     .     
T Consensus      1193 s~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1193 SLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred             HHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence            1111 1111100000000111223444555555555565655555555555554321     0011110     0     


Q ss_pred             cCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647          306 SGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS  381 (530)
Q Consensus       306 ~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls  381 (530)
                      ......|+..+.   +..++.++.....+.|.++..+.+ +.+.           .+..++..+.-+.+..++-+|.+++
T Consensus      1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----------Lie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-----------LIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred             CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHH-----------HHHHHHHHHhccCCCccchhHHHHH
Confidence            011122222221   345677777777888888755433 5443           4445555554455556688999999


Q ss_pred             HHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647          382 NIAAGSVEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       382 nl~~~~~~~~~~li~~~~l~~Li~lL~~  409 (530)
                      ||+....+...-..+  .+-||+-+-.+
T Consensus      1341 ~Ian~s~e~Lkn~as--aILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1341 NIANYSQEMLKNYAS--AILPLIFLAMH 1366 (1702)
T ss_pred             HHHHhhHHHHHhhHH--HHHHHHHHHHh
Confidence            987666554433322  34444444433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.01  E-value=0.28  Score=42.95  Aligned_cols=122  Identities=18%  Similarity=0.250  Sum_probs=93.2

Q ss_pred             HHHHhcCchHHHHHHHhcCCC-----ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHH
Q 009647          301 SLLVKSGVLQLLVERLATSNS-----LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLK  373 (530)
Q Consensus       301 ~~i~~~g~l~~Lv~lL~~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~  373 (530)
                      ..++..|++..|+.++.+...     .+++..+|.++..+..+....- ..+      ...++..++..+...  +..+.
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l------~~~FI~Kia~~Vn~~~~d~~i~   77 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTL------SDSFIKKIASYVNSSAMDASIL   77 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhc------cHHHHHHHHHHHccccccchHH
Confidence            457788999999998864332     3566778889988887653222 233      346888888888754  57899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647          374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      ..|...|-+++..++...+.+-+.=-++.|+..|+.++.+++..|...+-.+...+
T Consensus        78 q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   78 QRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999988665665555545999999999999999999998887777654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.94  E-value=0.019  Score=47.53  Aligned_cols=71  Identities=23%  Similarity=0.313  Sum_probs=58.5

Q ss_pred             CChHHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          450 GCLSGFIDLV-RSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       450 g~i~~L~~lL-~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      .++..|+++| .+.|+.++.+|+.=|..+.+..|.  .+..+++.|+-+.+-.|..|+|++|+..|...++++.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3578899999 456788888888888888887765  6788899999999999999999999999988887764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.94  E-value=0.051  Score=59.18  Aligned_cols=187  Identities=19%  Similarity=0.200  Sum_probs=125.8

Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHH--------HH----hcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV--------LL----SQGALPPLARMMLPNKGSTVRTAAWALSN  247 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~--------~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~n  247 (530)
                      ...|+.+|+.   +++-..++.++.-+..|++..+..        +.    -..++|.|++.+...+...+.+..-+|++
T Consensus       817 a~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            3345555543   455566777777777776543321        11    23578999998887677788888888998


Q ss_pred             hhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC---c
Q 009647          248 LIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS---L  322 (530)
Q Consensus       248 L~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~---~  322 (530)
                      ...+ -|++   .+.  ....+|.|++.|.-+|..++..+..++.-+....+.-...-+ .-++|.++.+= .+++   .
T Consensus       894 Vl~~-vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls-~~~~n~~~  967 (1030)
T KOG1967|consen  894 VLTN-VPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLS-SDNDNNMM  967 (1030)
T ss_pred             HHhc-CCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcC-CCCCcchh
Confidence            8754 3432   221  246788888889999999999999999888764432222222 23566666543 2333   4


Q ss_pred             cchhhhHHHHhhhhcCCcc-ccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647          323 QLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  382 (530)
Q Consensus       323 ~v~~~al~~L~nl~~~~~~-~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn  382 (530)
                      .++..|+.+|+.+...-+. .....       ...++..|.+.|.+++.-||++|..+=.+
T Consensus       968 ~VR~~ALqcL~aL~~~~P~~~l~~f-------r~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  968 VVREDALQCLNALTRRLPTKSLLSF-------RPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccc-------cHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            5788999999999974433 22222       34689999999999999999999876444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.71  E-value=0.54  Score=46.58  Aligned_cols=188  Identities=19%  Similarity=0.197  Sum_probs=110.9

Q ss_pred             hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHHHHHHHHHHHhhc--CCchhHH
Q 009647          226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSA--LSNVATS  301 (530)
Q Consensus       226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~~  301 (530)
                      .+..+.......+..++-.+.++...+   ...+.+.  ...+++.+.+.++.+..+-+.-|+.++.-++-  +..+...
T Consensus        48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   48 AIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            334444556788899999998887654   2233432  23567778888887765555555555555543  3333344


Q ss_pred             HHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcC---CccccchhcccCCCcchhhHHHHHH--Hhcc--------
Q 009647          302 LLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVK--CLKS--------  367 (530)
Q Consensus       302 ~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~---~~~~~~~~i~~g~~~~~~~l~~L~~--lL~~--------  367 (530)
                      .+++ .+.|.|...+.+.. .+.++..++.+||-++..   +...+...+        ..+..+..  ....        
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--------~~le~if~~~~~~~~~~~~~~~  195 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--------ESLESIFLLSILKSDGNAPVVA  195 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--------HHHHHHHHHHhcCcCCCccccc
Confidence            4544 46777877775332 344556677777766542   222222111        13332211  1211        


Q ss_pred             --CcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          368 --EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       368 --~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                        +++.+...|+.+.+-|... +...+....+ ..+|.|..+|.+.+.+||..|..+|.-+.
T Consensus       196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence              1245777777666666544 3333444433 36899999999999999999999987774

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PRK14707 hypothetical protein; Provisional

Probab=95.70  E-value=7.2  Score=47.24  Aligned_cols=390  Identities=14%  Similarity=0.082  Sum_probs=214.1

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHH
Q 009647          106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-AFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLL  183 (530)
Q Consensus       106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL-~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L  183 (530)
                      ++......++..|...++.++ ...+ -.+...|-.++.-+ +.++++.. ..|+..|.....+.......+- ..|...
T Consensus       176 ~~~~~c~~aa~~la~~~~~~d-~~~~-~~~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~~q~va~~  252 (2710)
T PRK14707        176 SDNPDCQAVAPRFAALVASDD-RLRS-AMDAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELKPQELGNA  252 (2710)
T ss_pred             CCCchHHHHHHHHHHHhcCCh-hhhc-ccchHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCChHHHHHH
Confidence            344456667777777766554 2222 23444455555544 45665554 3455666555555454444443 367777


Q ss_pred             HHhhcCCCCHHHHHHHHHHHH-hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH-hhcCCCCCchhhHH
Q 009647          184 IAHLGEKSSSPVAEQCAWALG-NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELI  261 (530)
Q Consensus       184 ~~lL~~~~~~~v~~~a~~~L~-nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~v  261 (530)
                      +.-|+..++..+..+++-+|. .++ +.+..++.+-..++-..|-.+-+-++..+.+.++-.|.. |..  ++.-.. .+
T Consensus       253 lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~--d~~l~~-~~  328 (2710)
T PRK14707        253 LNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD--DPELCK-AL  328 (2710)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc--cHhhhh-cc
Confidence            888877777767777665554 555 456677666665555555555556788888888777764 443  233222 12


Q ss_pred             HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcc
Q 009647          262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS  341 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~  341 (530)
                      ...++-..|-.+-+.+|..+-..++.+|..=...+++..+.+ +...+..+++.|.+=++..+...|..+|..=..++.+
T Consensus       329 ~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~  407 (2710)
T PRK14707        329 NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLE  407 (2710)
T ss_pred             chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChh
Confidence            122333334444456666555555555543333355444444 3445666666675556666665566666555545444


Q ss_pred             ccchhcccCCCcchhhHHHHHHHh-ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647          342 TISDVLVPGHGITDQVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY  420 (530)
Q Consensus       342 ~~~~~i~~g~~~~~~~l~~L~~lL-~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~  420 (530)
                      .... ++      ...+.-.+.-| +=++..+...++..|.--.+++.+.++.+--.++...|--+-+.++..+..+|+.
T Consensus       408 l~~~-~~------~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~  480 (2710)
T PRK14707        408 LRKG-LD------PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTAS  480 (2710)
T ss_pred             hhhh-cc------hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHH
Confidence            3332 22      23444444444 4456677777777777766777777766654454444444446788888888888


Q ss_pred             HHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHH
Q 009647          421 VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAME  500 (530)
Q Consensus       421 aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~  500 (530)
                      +|.-=....          .+.++.|--.++...|-.+-+.+|......++..|.-=+-.  .......|..-+....+.
T Consensus       481 ~La~~l~~~----------~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~ln  548 (2710)
T PRK14707        481 ALAARLAHE----------RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLK  548 (2710)
T ss_pred             HHHHHhccc----------HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHH
Confidence            775544321          13344454556666677777777776555544443322211  111223333333334455


Q ss_pred             HHhcCCcHHHHHHHHHHHHhhc
Q 009647          501 RFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       501 ~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      -|.++++....+.|..-|...+
T Consensus       549 alSKwp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        549 ALSKWPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             hhhcCCchhHHHHHHHHHHHHh
Confidence            5677777666666654444443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.69  E-value=0.078  Score=59.32  Aligned_cols=159  Identities=24%  Similarity=0.237  Sum_probs=117.9

Q ss_pred             CCHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh
Q 009647          137 GAIPVLVQCLAF---GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF  213 (530)
Q Consensus       137 g~v~~Lv~lL~~---~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~  213 (530)
                      ...|.+++..+.   .++|++|..|.-+|..+..-+.+-..   ...|.|+..|..++++.||.+++-++|-++.-.|..
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce---s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE---SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            355666666642   24478988899999998865543322   478999999997799999999999999988644432


Q ss_pred             HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647          214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  293 (530)
Q Consensus       214 r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  293 (530)
                      -     ...-+.|-+-|.++++.++++|..+|++|.-.       +++...|.++-+..+|.+++++|..-|=..+..|+
T Consensus       996 i-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  996 I-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN-------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             c-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            2     12334466667788999999999999999854       26668899999999999999999888887888887


Q ss_pred             cCCchhHHHHHhcCchHHHHHHH
Q 009647          294 ALSNVATSLLVKSGVLQLLVERL  316 (530)
Q Consensus       294 ~~~~~~~~~i~~~g~l~~Lv~lL  316 (530)
                      ...+    .++  +++|-++..|
T Consensus      1064 ~k~n----~iy--nlLPdil~~L 1080 (1251)
T KOG0414|consen 1064 SKGN----TIY--NLLPDILSRL 1080 (1251)
T ss_pred             hccc----chh--hhchHHHHhh
Confidence            6432    122  3566666655

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=0.71  Score=49.64  Aligned_cols=253  Identities=15%  Similarity=0.126  Sum_probs=151.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET  173 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~  173 (530)
                      .-+-+.+..+.+=+...|+.-+.-+|+.. . .+|.    .++..+.-+..+|.+.+ +.+.+||+..|.+++....   
T Consensus       206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~-~-~~p~----~~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~p~---  275 (948)
T KOG1058|consen  206 NYLLSNIDQIPSFNDSLQLVIVELIRKVC-L-ANPA----EKARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSNDPT---  275 (948)
T ss_pred             HHHHhhHhhccCccHHHHHHHHHHHHHHH-h-cCHH----HhhHHHHHHHHHHhcCC-chhhhhhcceEEEccCCHH---
Confidence            33444444444555666776677777763 2 2332    23445677888998875 6678999999999986533   


Q ss_pred             HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                       ++..+...++.++-..++-.++--..--|.-+....   +  -+-.|.+--++++|.+++.++++.+.-...-|....+
T Consensus       276 -alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~---~--~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  276 -ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH---E--KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN  349 (948)
T ss_pred             -HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh---H--HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence             222355666666654344444444444444433211   1  1223456678889999999999999888877876542


Q ss_pred             CCchhhHHHhhchHHHHHHHh-cc------CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchh
Q 009647          254 PKPATELIKVDGLLDAILRHL-KR------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI  326 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL-~~------~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~  326 (530)
                      -         ..++..|-+=+ ..      ++.+.+.....++++.+-..++..     +.+++.|++.+. +.++....
T Consensus       350 v---------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fis-D~N~~aas  414 (948)
T KOG1058|consen  350 V---------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFIS-DSNEAAAS  414 (948)
T ss_pred             H---------HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhc-cCCHHHHH
Confidence            1         12233332222 11      123567788888999987666553     456889999984 55555555


Q ss_pred             hhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCH
Q 009647          327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSV  388 (530)
Q Consensus       327 ~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~  388 (530)
                      ..+..+.......+...           ..++..|+.-+.. ....+-..|+|.++.-+.+..
T Consensus       415 ~vl~FvrE~iek~p~Lr-----------~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  415 DVLMFVREAIEKFPNLR-----------ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHHHHhCchHH-----------HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            56666665554333222           2344555544432 344678899999999887754

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.65  E-value=0.16  Score=48.23  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHh
Q 009647          415 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVERE  493 (530)
Q Consensus       415 ~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~  493 (530)
                      ...|+.+|--+|--.      |    .....+.+...+..|+++|. ...+.+...+|.+|..++...+  .+.+.||++
T Consensus       108 i~~aL~vLQGl~LLH------p----~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p--~N~r~FE~~  175 (257)
T PF08045_consen  108 IALALRVLQGLCLLH------P----PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSP--ENQRDFEEL  175 (257)
T ss_pred             HHHHHHHHHHHHHcC------c----hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcCh--HHHHHHHHh
Confidence            344556665555422      1    22456668899999999995 4678899999999999886543  367899999


Q ss_pred             chHHHHHHHhcCC--cHHHHHHHHHHHHhhcCCCCC
Q 009647          494 DGIDAMERFQFHE--NEDLRNMANGLVDKYFGEDYG  527 (530)
Q Consensus       494 ggl~~L~~L~~~~--~~~i~~~A~~il~~~f~~~~~  527 (530)
                      +|+..+..+..+.  +++++-++.+.|--|..++..
T Consensus       176 ~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~  211 (257)
T PF08045_consen  176 NGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETP  211 (257)
T ss_pred             CCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCC
Confidence            9999999887655  789999999999999888764

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.64  E-value=0.98  Score=46.10  Aligned_cols=224  Identities=18%  Similarity=0.192  Sum_probs=130.3

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcH--HHHHHcCCHHHHHHHhcCC-----CChHHHHH-HHHHHHHHhcCChhh-HHh
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFG-----SPDEQLLE-AAWCLTNIAAGKQEE-TKA  175 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~--~~ii~~g~v~~Lv~lL~~~-----~~~~~~~e-A~~~L~nia~~~~~~-~~~  175 (530)
                      ..+.+.++.|+-...|+...++-...  ..+.++=+.+.+=++|.+.     .++.+-+. +...|+.+|+...-. ...
T Consensus        22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~  101 (698)
T KOG2611|consen   22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEE  101 (698)
T ss_pred             ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHH
Confidence            55667899999999998765542222  3477777888888888642     23334333 778888888764322 234


Q ss_pred             hcCCcHHHHHhhcCCCCHH------HHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHH-HHHHHHHHh
Q 009647          176 LLPALPLLIAHLGEKSSSP------VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR-TAAWALSNL  248 (530)
Q Consensus       176 i~~~v~~L~~lL~~~~~~~------v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~-~a~~~L~nL  248 (530)
                      +++.||.|+.+++...+++      +.+.|..+|..+++. +.....++..|+++.+.+.-.-++-..-. -+...+--+
T Consensus       102 ~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~  180 (698)
T KOG2611|consen  102 MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL  180 (698)
T ss_pred             HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence            5589999999998755554      888999999999985 77888999999999999766543221111 111111111


Q ss_pred             hcC--CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc------hhH----HHHHhcCchHHHHHHH
Q 009647          249 IKG--PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN------VAT----SLLVKSGVLQLLVERL  316 (530)
Q Consensus       249 ~~~--~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~------~~~----~~i~~~g~l~~Lv~lL  316 (530)
                      ...  .-+.....+   ...+..+..=+...+....-+.|..|..+.....      .-.    ..-...|    ++..|
T Consensus       181 ~~~~~cw~e~~~~f---lali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G----~~~IL  253 (698)
T KOG2611|consen  181 VSKLDCWSETIERF---LALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG----VVAIL  253 (698)
T ss_pred             HHhcccCcCCHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH----HHHHH
Confidence            111  001111111   1223333333344455667777887774432111      000    0111233    33444


Q ss_pred             hcCCCccchhhhHHHHhhhh
Q 009647          317 ATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       317 ~~~~~~~v~~~al~~L~nl~  336 (530)
                      ...-.+.-+.||+....|+.
T Consensus       254 ~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  254 QNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             hcccCchhcChHHHHHHHHH
Confidence            33335566678888777775

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.62  E-value=1.5  Score=46.49  Aligned_cols=120  Identities=13%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647          152 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  231 (530)
Q Consensus       152 ~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~  231 (530)
                      ...+.-|+..+..+...-++....   ++..++.|..+ .+..||.+|+..|-.+|.+.++....+     ...|+++|+
T Consensus        36 ~k~K~Laaq~I~kffk~FP~l~~~---Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~  106 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFKHFPDLQEE---AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQ  106 (556)
T ss_dssp             HHHHHHHHHHHHHHHCC-GGGHHH---HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhChhhHHH---HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHh
Confidence            334444666666666555544333   55666666666 789999999999999999877665544     468999999


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---cCCHHHHHHHHHHHH
Q 009647          232 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---RADEELTTEVAWVVV  290 (530)
Q Consensus       232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~  290 (530)
                      ++++.-+..+-++|..|.+.+ |         .+.+..+...+.   ..|+.+++.++..|.
T Consensus       107 tdd~~E~~~v~~sL~~ll~~d-~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  107 TDDPVELDAVKNSLMSLLKQD-P---------KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             ---HHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcC-c---------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            999888888899998888643 1         244555555554   667788888876653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.62  E-value=0.02  Score=35.27  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             hHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      ++|.+.++++++++.||..|+++|++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.58  E-value=0.018  Score=35.54  Aligned_cols=28  Identities=36%  Similarity=0.561  Sum_probs=25.0

Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcC
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAG  208 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~  208 (530)
                      +|.+++++++ ++++||..|+++|++++.
T Consensus         2 lp~l~~~l~D-~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLND-PSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-CCHHHHHHHHHHHHHHHh
Confidence            6899999998 899999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.19  Score=52.10  Aligned_cols=152  Identities=12%  Similarity=0.183  Sum_probs=106.3

Q ss_pred             hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCCHHHHHHHHHHHHHhhcCCchhHHHHH
Q 009647          226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLV  304 (530)
Q Consensus       226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~  304 (530)
                      +-.++.+.++-++.+.++++..-..+..         ..+++..+++. .++.+.+|+..|..+|+.+|..+.       
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence            3455666677777777777765433421         23566666666 667788999999999999997433       


Q ss_pred             hcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647          305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  384 (530)
Q Consensus       305 ~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~  384 (530)
                        ..++..+++|..+-++.++.-..-+||-.+.+...+             -++..|-.++.+...-||..||.+++-|.
T Consensus       585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl  649 (926)
T COG5116         585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------------VATDILEALMYDTNDFVRQSAMIAVGMIL  649 (926)
T ss_pred             --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------------HHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence              456777888877778899998899999888876543             26667777888888899999999999886


Q ss_pred             cC-CHHHHHHHHhCCcHHHHHHHhcCC
Q 009647          385 AG-SVEHKQLIHSSEALALLLHLLSTS  410 (530)
Q Consensus       385 ~~-~~~~~~~li~~~~l~~Li~lL~~~  410 (530)
                      .. +++....+  .+++..+.+++.+.
T Consensus       650 ~Q~n~~Lnp~v--~~I~k~f~~vI~~K  674 (926)
T COG5116         650 MQCNPELNPNV--KRIIKKFNRVIVDK  674 (926)
T ss_pred             hhcCcccChhH--HHHHHHHHHHHhhh
Confidence            53 33221111  13555666666443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.56  E-value=0.28  Score=42.96  Aligned_cols=123  Identities=10%  Similarity=0.111  Sum_probs=92.8

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCC-----hHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCC-CHHHHHHHHHH
Q 009647          130 IETALKAGAIPVLVQCLAFGSP-----DEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWA  202 (530)
Q Consensus       130 ~~~ii~~g~v~~Lv~lL~~~~~-----~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~-~~~v~~~a~~~  202 (530)
                      ..+++..|+++.|+..+..+..     .+....+..++.++-.+..-.-+.+- ..|...+.+...+. +..+...|+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4678999999999999987653     23434467777777654321222222 25666777776543 68999999999


Q ss_pred             HHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          203 LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       203 L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                      |-++...++.....+.+.=-++.|+.+|+.+++.++.++.-.+-.|....
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            99999988887888888888999999999999999999998888777654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=2.2  Score=48.38  Aligned_cols=240  Identities=13%  Similarity=0.061  Sum_probs=137.0

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc----CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHH
Q 009647          143 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVL  217 (530)
Q Consensus       143 v~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~----~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~  217 (530)
                      +....+.+...+|..+...|..++...+ ....+.    ..-..|..-+++ .....+...+.+|..|-...+ +..+.+
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSSPS-GEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3334444457788999999999997732 211111    234444444444 344566666777776665433 333333


Q ss_pred             HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc--C---CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647          218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIK--G---PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  292 (530)
Q Consensus       218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~---~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  292 (530)
                      . .-+...++.+ +..+...++++.-+|..++.  .   ....+..+.  ...+++.|...+-.+...+....+-++..+
T Consensus       737 ~-k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~--lnefl~~Isagl~gd~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 P-KLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI--LNEFLSIISAGLVGDSTRVVASDIVAITHI  812 (1176)
T ss_pred             H-HHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH--HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence            2 2233334444 77788999999999988882  1   111121222  235555555444333322332224555555


Q ss_pred             hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcccc-chhcccCCCcchhhHHHHHHHhccCcHh
Q 009647          293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQVIAVLVKCLKSEHRV  371 (530)
Q Consensus       293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~-~~~i~~g~~~~~~~l~~L~~lL~~~~~~  371 (530)
                      ............-.+++..+.-+| .++++++...|++.+.-+++.-++.. ....       ..++|.+..+++.....
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-------~~LL~sll~ls~d~k~~  884 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHL-------EELLPSLLALSHDHKIK  884 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-------HHHHHHHHHHHHhhhHH
Confidence            432222222112233445555566 47899999999999999998766532 2222       34888888888777788


Q ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHh
Q 009647          372 LKKEAAWVLSNIAAG-SVEHKQLIHS  396 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~-~~~~~~~li~  396 (530)
                      +|+.+-..+--++.. +.+.++.++.
T Consensus       885 ~r~Kvr~LlekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  885 VRKKVRLLLEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence            888888888877653 3455555544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.50  E-value=0.11  Score=45.99  Aligned_cols=145  Identities=16%  Similarity=0.161  Sum_probs=102.3

Q ss_pred             hHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647          309 LQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       309 l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~  387 (530)
                      +..++..|.. ...++++..++-++..+.   +......-       ..+-+.+..++...+.+-...++.+++.+--+.
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-------~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~   74 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-------EKISDFIESLLDEGEMDSLIIAFSALTALFPGP   74 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-------HHHHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence            4455555643 457788888888888884   11111111       224445555565555567788999999998888


Q ss_pred             HHHHHHHH-hCCcHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhcc-CC
Q 009647          388 VEHKQLIH-SSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-AD  463 (530)
Q Consensus       388 ~~~~~~li-~~~~l~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d  463 (530)
                      ++....++ ..|+++.++.++.  ..+..++..++.+|...|..            +.++..+...+++-|-++++. +|
T Consensus        75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------------~~~r~~I~~~~~~~L~~~~~~~~~  142 (157)
T PF11701_consen   75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------------KSCRTFISKNYVSWLKELYKNSKD  142 (157)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------------HHHHHCCHHHCHHHHHHHTTTCC-
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------------HHHHHHHHHHHHHHHHHHHccccc
Confidence            88888877 5688999999998  78889999999999888763            567888888899999999964 44


Q ss_pred             HH-HHHHHHHHHH
Q 009647          464 IE-AARLGLQFME  475 (530)
Q Consensus       464 ~~-i~~~~L~~L~  475 (530)
                      .. +...++-+|.
T Consensus       143 ~~~ir~~A~v~L~  155 (157)
T PF11701_consen  143 DSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            54 5555555443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.49  E-value=0.19  Score=54.21  Aligned_cols=218  Identities=16%  Similarity=0.128  Sum_probs=146.7

Q ss_pred             HHHHHHHHHh-hcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHH-HhhcCCCCCchhhHHHhhchHHHHHHH
Q 009647          196 AEQCAWALGN-VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELIKVDGLLDAILRH  273 (530)
Q Consensus       196 ~~~a~~~L~n-la~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~v~~~~~l~~L~~l  273 (530)
                      -.+.-|..-- ++....+-|...+..|+...|+++..............+|. .+.. . ...      ....++.+.+.
T Consensus       478 akt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~-~~~------~~~v~~~~~s~  549 (748)
T KOG4151|consen  478 AKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-P-GER------SYEVVKPLDSA  549 (748)
T ss_pred             HHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-C-CCc------hhhhhhhhcch
Confidence            3333354332 33334566777888999999999988777777777777776 2211 1 011      23556666666


Q ss_pred             hccCCH-HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647          274 LKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG  352 (530)
Q Consensus       274 L~~~d~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~  352 (530)
                      ++.... --.-+++-++.||+..++...+.++..-.++.+-+++ ...++..+..++..+.|+.-++.-....+.+.   
T Consensus       550 ~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~---  625 (748)
T KOG4151|consen  550 LHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEY---  625 (748)
T ss_pred             hhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhcc---
Confidence            654322 1245678888999986666666677776777766666 36788889999999999998876655555542   


Q ss_pred             cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHH-HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL-IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~-li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                        ...++.....+.........+++.++.-|+.-...++.. .--......++.++.+++..+|...+..+.|+..
T Consensus       626 --~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~  699 (748)
T KOG4151|consen  626 --KDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE  699 (748)
T ss_pred             --ccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence              345666666666666677777777777777665555553 2223567888899999999999999999999643

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.38  E-value=1.6  Score=44.64  Aligned_cols=154  Identities=14%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHhhc-C-CCCCchhhHHHhhchHHHHHHHhccC---CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchH
Q 009647          236 STVRTAAWALSNLIK-G-PDPKPATELIKVDGLLDAILRHLKRA---DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ  310 (530)
Q Consensus       236 ~~~~~a~~~L~nL~~-~-~~~~~~~~~v~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~  310 (530)
                      .+.+....++..+.. + ......+..+.....+..|..++.+.   .+.+...|+..+..+..+++.....+.+.|+.+
T Consensus        75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            455666667777766 2 22223333332145566666777655   368899999999999998888999999999999


Q ss_pred             HHHHHHh-cC--CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH--hHHH-HHHHHHH---
Q 009647          311 LLVERLA-TS--NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR--VLKK-EAAWVLS---  381 (530)
Q Consensus       311 ~Lv~lL~-~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~--~i~~-~A~~~Ls---  381 (530)
                      .+++.+. ..  ++.+++...-.+|+.||-.+.. .+.+.+      .+.++.++.++.+++.  .++. +.+..++   
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~------~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~  227 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKS------SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSF  227 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHh------cChHHHHHHHhCCHHHHHHhcccchHHHHHHHH
Confidence            9999885 11  3445555555666777655433 334443      4688888888877643  1222 4444444   


Q ss_pred             -HHhcCCHHHHHHHHh
Q 009647          382 -NIAAGSVEHKQLIHS  396 (530)
Q Consensus       382 -nl~~~~~~~~~~li~  396 (530)
                       .|.++.+.....+++
T Consensus       228 DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  228 DELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHccCHHHHHHHHH
Confidence             355666665555544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.13  E-value=0.081  Score=39.84  Aligned_cols=64  Identities=17%  Similarity=0.272  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC
Q 009647          156 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG  221 (530)
Q Consensus       156 ~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g  221 (530)
                      +.|.|++.++++... ....+.  +.++.++++..+++...+|-.|.++|+-|+. ..+..+.+.+.|
T Consensus         5 KaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    5 KAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            569999999998654 333333  6999999999888889999999999999997 667777776665

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=6.3  Score=42.96  Aligned_cols=284  Identities=12%  Similarity=0.102  Sum_probs=155.7

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ..|.+=..|.+ ...-+...|+.++.++..-.+  |..   ..++..|-.++.++...++-.|..+|..++... |.   
T Consensus       246 ~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~--r~l---~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P~---  315 (865)
T KOG1078|consen  246 LFPFLESCLRH-KSEMVIYEAARAIVSLPNTNS--REL---APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-PQ---  315 (865)
T ss_pred             HHHHHHHHHhc-hhHHHHHHHHHHHhhccccCH--hhc---chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-Cc---
Confidence            34444445554 567788899999988876432  211   126667777788889999999999999998643 32   


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                       .+  ...=+-|-.++.+.+..+-.-|..+|.  ..|.+..+..+...  +...+.-+ +..-.-+...|+++|++....
T Consensus       316 -~v--~~cN~elE~lItd~NrsIat~AITtLL--KTG~e~sv~rLm~q--I~~fv~di-sDeFKivvvdai~sLc~~fp~  387 (865)
T KOG1078|consen  316 -AV--TVCNLDLESLITDSNRSIATLAITTLL--KTGTESSVDRLMKQ--ISSFVSDI-SDEFKIVVVDAIRSLCLKFPR  387 (865)
T ss_pred             -cc--cccchhHHhhhcccccchhHHHHHHHH--HhcchhHHHHHHHH--HHHHHHhc-cccceEEeHHHHHHHHhhccH
Confidence             11  122233455566666556555555442  23455555544332  22223222 122223345677777665421


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      .              ..+.+..|..+|.. +-.+.++...-++..++...++....     ++..|...+.+-.  ...-
T Consensus       388 k--------------~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce--~~~i  446 (865)
T KOG1078|consen  388 K--------------HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE--FTQI  446 (865)
T ss_pred             H--------------HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc--chHH
Confidence            1              12466777777754 33467777788888777655544332     3445555554433  2334


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID  497 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~  497 (530)
                      +...|.-+-..+   +.+|.+ ..+++++.         +.+--.+..+...+..+|.++....+.  ...     ...-
T Consensus       447 ~~rILhlLG~Eg---P~a~~P-skyir~iy---------NRviLEn~ivRaaAv~alaKfg~~~~~--l~~-----sI~v  506 (865)
T KOG1078|consen  447 AVRILHLLGKEG---PKAPNP-SKYIRFIY---------NRVILENAIVRAAAVSALAKFGAQDVV--LLP-----SILV  506 (865)
T ss_pred             HHHHHHHHhccC---CCCCCc-chhhHHHh---------hhhhhhhhhhHHHHHHHHHHHhcCCCC--ccc-----cHHH
Confidence            555665554321   122221 13444433         222223455566677777777622111  111     1234


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          498 AMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       498 ~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      .|.+++++.+.++++.|...+...
T Consensus       507 llkRc~~D~DdevRdrAtf~l~~l  530 (865)
T KOG1078|consen  507 LLKRCLNDSDDEVRDRATFYLKNL  530 (865)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHh
Confidence            567778888888888887666544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.10  E-value=0.99  Score=46.00  Aligned_cols=186  Identities=13%  Similarity=0.143  Sum_probs=118.8

Q ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           94 EELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        94 ~~l~~~l~~l~s~-d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      ..+..++..+.+. ..+.+-.|+..|-++++.+.-.-+.+.. ..++-.+++.|....++..+..|.+.|..++..++  
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--  362 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--  362 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--
Confidence            3445555555443 5667888999999998766544343333 33566778888764445566679999999997654  


Q ss_pred             HHhhcC----CcHHHHHhhcCCCCHHHHHHHHHH-HHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647          173 TKALLP----ALPLLIAHLGEKSSSPVAEQCAWA-LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN  247 (530)
Q Consensus       173 ~~~i~~----~v~~L~~lL~~~~~~~v~~~a~~~-L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n  247 (530)
                       ..+++    +|..+++.-.+ ++.++...|.-+ +.-++...|..+        |..+..++...|......++.++..
T Consensus       363 -~~l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tk  432 (516)
T KOG2956|consen  363 -ARLFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTK  432 (516)
T ss_pred             -HhhhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence             34443    66677766665 445554444443 444444443322        2334444555666677777778888


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      ++..-..+....+  ...+.|.+++-..+....|+..+..||.++..
T Consensus       433 l~e~l~~EeL~~l--l~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  433 LFERLSAEELLNL--LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHhhcCHHHHHHh--hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            8865321221222  46888999999899999999999999998874

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=1  Score=49.27  Aligned_cols=181  Identities=14%  Similarity=0.129  Sum_probs=115.2

Q ss_pred             hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 009647          229 MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV  308 (530)
Q Consensus       229 lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~  308 (530)
                      .+.++.+.++..+...++.+.+...+.   ..+...+++...+..+.+.|+-+..+|...+..||+-        ....+
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~---~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~i  803 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKA---TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDI  803 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchh---hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhh
Confidence            344566788899999999999754222   2333568899999999999999999999988888863        33456


Q ss_pred             hHHHHHHHhcCCC---ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          309 LQLLVERLATSNS---LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       309 l~~Lv~lL~~~~~---~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      +|.+.+.-....+   ++.+..+=.++++++..-.+-.....       .-++..++..+..++...|..++..+++++.
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-------~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq  876 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-------AVLINTFLSGVREPDHEFRASSLANLGQLCQ  876 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-------HHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence            7777774432221   12233333445554433222222222       1245556666666677789999999999986


Q ss_pred             CCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCC
Q 009647          386 GSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       386 ~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      -..-+....+ ..++..++.+. .++++-+|+.|+-.|..+..+
T Consensus       877 ~~a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  877 LLAFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHhhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            4332222211 12455566665 456788999999999988764

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.95  E-value=1.9  Score=44.07  Aligned_cols=192  Identities=13%  Similarity=0.163  Sum_probs=116.4

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCc---hhHHHHHhcCChhhhHhhcCCC-------ChhHHHHHHHHHHHhhcC
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGE---EFRNVLLSQGALPPLARMMLPN-------KGSTVRTAAWALSNLIKG  251 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~---~~r~~~~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~  251 (530)
                      .+..++.. .+.+-+-.|+.....++...+   ..|..+++.=+.+.+-+++.+.       +.-.+..++..|.-+|+.
T Consensus        15 ~~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   15 DCLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hHHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            34555555 455667777888888875332   4567788998899999998742       223345566667888876


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccC-CHH------HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccc
Q 009647          252 PDPKPATELIKVDGLLDAILRHLKRA-DEE------LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL  324 (530)
Q Consensus       252 ~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~------v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v  324 (530)
                      ..-....+++   ..||.|+.++... |++      +..++-.||.-++. .+...+.++..|.++.+.+.-..++...-
T Consensus        94 pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   94 PELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             hhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCCCCchh
Confidence            4332333332   6789999988743 222      77888888877776 57778889999999999876532222111


Q ss_pred             hhhhHHHHhhhhcCCcccc---chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647          325 LIPVLRSLGNLVAGDSSTI---SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       325 ~~~al~~L~nl~~~~~~~~---~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~  386 (530)
                      ..-++..+--.+.+.+...   ..++        .++..+..=+...+...+.+.|..|+.+...
T Consensus       170 ~alal~Vlll~~~~~~cw~e~~~~fl--------ali~~va~df~~~~~a~KfElc~lL~~vl~~  226 (698)
T KOG2611|consen  170 MALALKVLLLLVSKLDCWSETIERFL--------ALIAAVARDFAVLHNALKFELCHLLSAVLSS  226 (698)
T ss_pred             HHHHHHHHHHHHHhcccCcCCHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence            2233333333333322111   1111        1333333333444567788999999976543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.94  E-value=0.77  Score=49.13  Aligned_cols=257  Identities=12%  Similarity=0.154  Sum_probs=160.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  175 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~  175 (530)
                      +..++..++-.+.+.+..=...|.+-+...   | ..++..-++|.|+..+...+........+.-++......+    .
T Consensus       256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~~---p-e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e----y  327 (690)
T KOG1243|consen  256 TLLFLEELRLKSVEEKQKFFSGLIDRLDNF---P-EEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE----Y  327 (690)
T ss_pred             HHHHHHhcccCcHHHHHHHHHHHHHHHhhh---h-HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc----c
Confidence            344555566677777766666666643322   2 5678888999999988866522111222222233322211    3


Q ss_pred             hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC
Q 009647          176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK  255 (530)
Q Consensus       176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~  255 (530)
                      ..+.+|.+++++.. ++..+|-..+.-+-+..   +.+.+.+++.-++|.+..-+.+.+..+++..+.++.-|+.--+  
T Consensus       328 q~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             ccchhhhHHHHhcC-cchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            33689999999988 77888877665555544   3556677888899999999999999999999999998884321  


Q ss_pred             chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCch-HHHHHHHhcCCCccchhhhHHHHhh
Q 009647          256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL-QLLVERLATSNSLQLLIPVLRSLGN  334 (530)
Q Consensus       256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l-~~Lv~lL~~~~~~~v~~~al~~L~n  334 (530)
                        .. ......+..+.++-.+++..++.+..-||+.++....    .....+++ .+..+.+ .++-..-+..++.++..
T Consensus       402 --~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~----~~~R~~vL~~aftral-kdpf~paR~a~v~~l~a  473 (690)
T KOG1243|consen  402 --KR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA----ASVRKRVLASAFTRAL-KDPFVPARKAGVLALAA  473 (690)
T ss_pred             --hh-hhcHHHHHHHHhhCccccCcccccceeeecccccccc----hhhhccccchhhhhhh-cCCCCCchhhhhHHHhh
Confidence              11 1234566666666666677899999999988876322    12233333 2333334 23434445555555554


Q ss_pred             hhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHH
Q 009647          335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI  383 (530)
Q Consensus       335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl  383 (530)
                      ....-+..  .+       ...++|.++.+.-+.+..+|..|..++...
T Consensus       474 t~~~~~~~--~v-------a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  474 TQEYFDQS--EV-------ANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             cccccchh--hh-------hhhccccccccccCcccchhhHHHHHHHHH
Confidence            33322221  12       135888888888888888888877777654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.93  E-value=0.33  Score=44.18  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC--------CCChHHHHHHHHHHHHHhcCChhhHHhhc---CCcH
Q 009647          113 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF--------GSPDEQLLEAAWCLTNIAAGKQEETKALL---PALP  181 (530)
Q Consensus       113 ~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~--------~~~~~~~~eA~~~L~nia~~~~~~~~~i~---~~v~  181 (530)
                      ..+..|+..|...+-..++.+++.|++..|+.+|..        ......+.+++.||..|..... ....++   +++.
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHH
Confidence            667777777776655667889999999999998852        1334667889999999986653 456666   5899


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhc
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVA  207 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla  207 (530)
                      .++..|.+ ++..++..++-.|+-+|
T Consensus       162 ~i~~~L~s-~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDS-PNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence            99999987 78999999999999877

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.83  E-value=3.2  Score=41.50  Aligned_cols=204  Identities=13%  Similarity=0.099  Sum_probs=137.3

Q ss_pred             HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh-----HHhhcCC-cHHHHHhhcCCCCHHHHHHHHHHHH
Q 009647          131 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-----TKALLPA-LPLLIAHLGEKSSSPVAEQCAWALG  204 (530)
Q Consensus       131 ~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~-----~~~i~~~-v~~L~~lL~~~~~~~v~~~a~~~L~  204 (530)
                      .++.+.+.++.|+..|..-+ -+.+..++.+..++.......     .+.+..- -..+..++...+++++.-.|--.|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence            45677899999999998654 455667888888887554322     3333333 2233334444455677777777777


Q ss_pred             hhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHH
Q 009647          205 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELT  282 (530)
Q Consensus       205 nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~  282 (530)
                      ..+. .+.+...++....+-.+...++.++-++...|.-++.-+...+ +....+.+.  -..+...+..+|.+++--++
T Consensus       149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            7666 5677888888989999999999999999999999998755432 223233332  12456677889999999999


Q ss_pred             HHHHHHHHHhhcCCchhHH----HHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647          283 TEVAWVVVYLSALSNVATS----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  339 (530)
Q Consensus       283 ~~a~~~L~~L~~~~~~~~~----~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  339 (530)
                      ..++..|+.|..+ ..+..    .+-+..-+..++.+| ++.+..++..|..++--.+..+
T Consensus       227 rqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  227 RQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-S
T ss_pred             hhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCC
Confidence            9999999999863 33333    333455677788888 5788889999999988887664

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.83  E-value=0.59  Score=51.97  Aligned_cols=181  Identities=17%  Similarity=0.146  Sum_probs=125.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH-hhcCCc
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK-ALLPAL  180 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~-~i~~~v  180 (530)
                      .+-+.+-..+.+|+..+...++... ..+ .-...|.+-.++.....+.+..+...|+.+|.-|+.+-..... ...+..
T Consensus       261 ~~~s~~WK~R~Eale~l~~~l~e~~-~~~-~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~  338 (815)
T KOG1820|consen  261 EMLSKKWKDRKEALEELVAILEEAK-KEI-VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVF  338 (815)
T ss_pred             hhhccchHHHHHHHHHHHHHHhccc-ccc-ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhc
Confidence            3348899999999999999887554 111 1122556666666666666666667799999999966544433 334789


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC-chhh
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK-PATE  259 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~  259 (530)
                      |.|+..+.. ....+++.+..++-.++...+       ....++.++..+++.++.+...+.-.+....+...+. ....
T Consensus       339 p~lld~lke-kk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~  410 (815)
T KOG1820|consen  339 PSLLDRLKE-KKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE  410 (815)
T ss_pred             chHHHHhhh-ccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence            999999987 667888887777766654221       1235677788888888888777555555444432222 2222


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      .  ..+.+|.++....+.+.+|+..+..++.-+-.
T Consensus       411 t--~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  411 T--VKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             h--HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            3  45889999999999999999999888877764

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.80  E-value=0.29  Score=52.91  Aligned_cols=201  Identities=13%  Similarity=0.095  Sum_probs=127.8

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHH
Q 009647          106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL  183 (530)
Q Consensus       106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L  183 (530)
                      +.+..++.+..+|...++.....+      ..+++++...+..+..-...+|++.+++|+++.+...++.++  -+++.+
T Consensus       516 q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~i  589 (748)
T KOG4151|consen  516 QFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKI  589 (748)
T ss_pred             hchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhh
Confidence            345556666666652223333222      236667777666543222347899999999998887777776  366665


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh-cCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647          184 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  262 (530)
Q Consensus       184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~  262 (530)
                      -.++.. .++-++..++.++.|+....--+...+.+ ...++.....+...+.....+++.++..+..-......+ ...
T Consensus       590 e~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~-~~~  667 (748)
T KOG4151|consen  590 EELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR-ILE  667 (748)
T ss_pred             HHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh-HHH
Confidence            566655 78999999999999999854445555666 345666655665555666666666666444322111111 222


Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE  314 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~  314 (530)
                      .......+..++.+++++++...+.+..++.....+....++....++.+..
T Consensus       668 ~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  668 LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence            3467778888899999999988888888876655555555555555554443

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=5.6  Score=40.44  Aligned_cols=262  Identities=15%  Similarity=0.121  Sum_probs=162.8

Q ss_pred             HHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC----CCC---chhhHHHhhchHHHHHHHhc
Q 009647          203 LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP----DPK---PATELIKVDGLLDAILRHLK  275 (530)
Q Consensus       203 L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~----~~~---~~~~~v~~~~~l~~L~~lL~  275 (530)
                      +.-+|. -|..-..+++.++++.|+.+|.+.+.++..+.+-.|--|..-+    +..   ...+.+...++++.|++-+.
T Consensus       108 mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve  186 (536)
T KOG2734|consen  108 MHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE  186 (536)
T ss_pred             HHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence            334444 5677778889999999999999999999998888888887532    112   12233446788888888876


Q ss_pred             cCCHH------HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-CCccchhhhHHHHhhhhcCCccccchhcc
Q 009647          276 RADEE------LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSLGNLVAGDSSTISDVLV  348 (530)
Q Consensus       276 ~~d~~------v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~  348 (530)
                      .-|+.      -...++..+-|+..-.++....+++.|.+.-|+..+... .-..-...|...++-+...++.....+- 
T Consensus       187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~-  265 (536)
T KOG2734|consen  187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG-  265 (536)
T ss_pred             HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc-
Confidence            43333      355677788888887888888888888888777655322 2222344566666666555543222111 


Q ss_pred             cCCCcchhhHHHHHHHhc---cCc------HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          349 PGHGITDQVIAVLVKCLK---SEH------RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       349 ~g~~~~~~~l~~L~~lL~---~~~------~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                           ...++..+++-+.   ..+      .....+-.-+|+.+... +.+...+....++....-+++. ....+..|.
T Consensus       266 -----~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal  338 (536)
T KOG2734|consen  266 -----PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSAL  338 (536)
T ss_pred             -----CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence                 2345666555442   122      23445555555555443 4667777766666554444444 445677899


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-cCC---------HHHHHHHHHHHHHHHccC
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SAD---------IEAARLGLQFMELVLRGM  481 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d---------~~i~~~~L~~L~~il~~~  481 (530)
                      .+|-.+..+++   |+     ..|..+++-+++..++.+.- .+.         .+.-.-....|..++..+
T Consensus       339 kvLd~am~g~~---gt-----~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  339 KVLDHAMFGPE---GT-----PNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             HHHHHHHhCCC---ch-----HHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            99999888764   44     45777888777776665443 111         123334555566666544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.66  E-value=0.43  Score=47.16  Aligned_cols=113  Identities=16%  Similarity=0.130  Sum_probs=83.7

Q ss_pred             hhHHHHH-HHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647          356 QVIAVLV-KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  434 (530)
Q Consensus       356 ~~l~~L~-~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  434 (530)
                      +.+..|+ +.+.+.++.+|+.|..+++-.+--+.+....     .++.+.+.++.++..++..|+.+|..+....    |
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~----g   96 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTH----G   96 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----C
Confidence            4555554 7788999999999999999888766543332     4667888887788999999999999987531    1


Q ss_pred             CchhHHHHHHHH-------HhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          435 KPKLIQEHLVSL-------VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       435 ~~~~~~~~~~~l-------~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      .     +.....       -...++..|.+.|.+.+++++..+.+++..++-.+.
T Consensus        97 ~-----~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~  146 (298)
T PF12719_consen   97 I-----DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR  146 (298)
T ss_pred             c-----hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence            0     111111       124677889999999999999999999999986543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.64  E-value=1.3  Score=45.11  Aligned_cols=244  Identities=20%  Similarity=0.140  Sum_probs=132.4

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCch
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      -|..++.=|....+..+|..++--|+.-|. ++++|..+..+|....+++.+.. ++..+..-++-++..+...+.+  .
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~--~   98 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL--N   98 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc--c
Confidence            345555555544567889999999999998 68999999999999999998853 3332444444444443333221  1


Q ss_pred             hhHHHhhchHHHHHHHhc--cC-------C-----------------------------------HHHHHHHHHHHHHhh
Q 009647          258 TELIKVDGLLDAILRHLK--RA-------D-----------------------------------EELTTEVAWVVVYLS  293 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~--~~-------d-----------------------------------~~v~~~a~~~L~~L~  293 (530)
                      ...+.....+..+++++.  ..       +                                   .+.+.-+..|+-.++
T Consensus        99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~  178 (361)
T PF07814_consen   99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLV  178 (361)
T ss_pred             hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHH
Confidence            222223444555555554  00       0                                   011112233333331


Q ss_pred             c--------------CCchhHHHHHhcCchHHHHHHHhc----C------CC-----ccchhhhHHHHhhhhcCCccccc
Q 009647          294 A--------------LSNVATSLLVKSGVLQLLVERLAT----S------NS-----LQLLIPVLRSLGNLVAGDSSTIS  344 (530)
Q Consensus       294 ~--------------~~~~~~~~i~~~g~l~~Lv~lL~~----~------~~-----~~v~~~al~~L~nl~~~~~~~~~  344 (530)
                      .              ..+...+.+...|++..+++.+..    .      .+     ......++++|-|.+..+.....
T Consensus       179 ~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~  258 (361)
T PF07814_consen  179 RSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS  258 (361)
T ss_pred             HHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH
Confidence            0              001112334456778888888751    1      01     11234578888888766655444


Q ss_pred             hhcccCCCcchhhHHHHHH----HhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH-------hc-----
Q 009647          345 DVLVPGHGITDQVIAVLVK----CLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL-------LS-----  408 (530)
Q Consensus       345 ~~i~~g~~~~~~~l~~L~~----lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l-------L~-----  408 (530)
                      ..+..    ..+.++.+..    .+...-..+...++.++-|++-.++..+..+-..++...+..+       +.     
T Consensus       259 ~l~~~----~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~  334 (361)
T PF07814_consen  259 YLLSH----RSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYV  334 (361)
T ss_pred             HHHHh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccc
Confidence            44332    1223332222    2222234556789999999998887766665543322221111       11     


Q ss_pred             --CCChhHHHHHHHHHHHhcCCC
Q 009647          409 --TSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       409 --~~~~~v~~eA~~aL~nl~~~~  429 (530)
                        ...++...-+..++.|++..+
T Consensus       335 ~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  335 PEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             cccccchHHHHHHHhHHHheeeC
Confidence              123566667888888887653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.51  E-value=2.5  Score=39.55  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc----CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647          282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV  357 (530)
Q Consensus       282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~  357 (530)
                      +.+++..|..++. +++....++++.+--.+..+|..    .+.+-.+..++..||.++..++.....++-     +.++
T Consensus        96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-----~TeI  169 (293)
T KOG3036|consen   96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-----TTEI  169 (293)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-----Hhhh
Confidence            3455555555565 66666777777766667777742    223456779999999999877655433332     4689


Q ss_pred             HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHH---h-----CCcHHH-HHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH---S-----SEALAL-LLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       358 l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li---~-----~~~l~~-Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      +|..++.+..++.--+..|.+++..|...+. ....+.   +     ..++.. +.++.+.+++.+-+.++.+..+++.+
T Consensus       170 VPlCLrime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  170 VPLCLRIMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999889999999999876432 222111   0     013333 34455778899999999999999875

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=2.6  Score=45.17  Aligned_cols=223  Identities=16%  Similarity=0.144  Sum_probs=136.1

Q ss_pred             hhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009647          225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL  302 (530)
Q Consensus       225 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~  302 (530)
                      .|-+-|+.++..++.+|+-.+.++.--.+|....+.+.  ...-...+.++|.++-+.++..|..-++.+....-+.+..
T Consensus       178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~  257 (1005)
T KOG1949|consen  178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP  257 (1005)
T ss_pred             HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence            34455667899999999999999875444443222110  1234456888999999999988877776665421111111


Q ss_pred             HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647          303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  382 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn  382 (530)
                      -+-..++..+.+-+......+|+......|-.+....-.  ..+++       .++|.+-..|.+....||..+.-.|.-
T Consensus       258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-------~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-------QLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-------HHHHhcchhhhccchhHHHHHHHHHHH
Confidence            111233444444444445568888888888888755422  22332       477788888888888999999999988


Q ss_pred             HhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH-HHHHHHHHhc--CChHHHHhhh
Q 009647          383 IAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI-QEHLVSLVGR--GCLSGFIDLV  459 (530)
Q Consensus       383 l~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~-~~~~~~l~~~--g~i~~L~~lL  459 (530)
                      |-...--+...++   -...++..|...+..+.+.-+..|.|.+--..    .|+.. -+.+.+|++.  .+...++++|
T Consensus       329 ik~vra~~f~~I~---~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~----k~ee~~c~Rc~tlv~~n~~A~~rf~~~l  401 (1005)
T KOG1949|consen  329 IKAVRAAKFWKIC---PMDHILVRLETDSRPVSRRLVSLIFNSFLPVN----KPEEVWCERCVTLVQMNHAAARRFYQYL  401 (1005)
T ss_pred             HHhhhhhhhhccc---cHHHHHHHHhccccHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHccCHHHHHHHHHHh
Confidence            8443222222222   24456666777777777777777888775321    12111 1455677754  3455677777


Q ss_pred             ccCC
Q 009647          460 RSAD  463 (530)
Q Consensus       460 ~~~d  463 (530)
                      ..-.
T Consensus       402 ~~~~  405 (1005)
T KOG1949|consen  402 HEHT  405 (1005)
T ss_pred             cccc
Confidence            6533

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.47  Score=49.30  Aligned_cols=128  Identities=17%  Similarity=0.179  Sum_probs=88.8

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      .|+|..+++.--++.++++++.|..+|+-+|..++.       .++..+++|+.+.++.||...+.+||-.|.....   
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---  619 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---  619 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---
Confidence            456677777644555577778888888888887663       5677788888777899999999999987764321   


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHH
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE  280 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~  280 (530)
                          .-++..|-.++.+++.=++..|+-+++-+.-..+|+-.+.   ..++...+.+++....++
T Consensus       620 ----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~---v~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         620 ----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN---VKRIIKKFNRVIVDKHES  677 (926)
T ss_pred             ----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh---HHHHHHHHHHHHhhhhHh
Confidence                1134555566677777778888888887665555554333   357778888888755443

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.16  Score=54.15  Aligned_cols=130  Identities=18%  Similarity=0.171  Sum_probs=82.8

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHH
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL  217 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~  217 (530)
                      +|..|+++--++.++++++.|..+|+-+++.+++       .+|..+.+|+.+.++.||.-++.+||--|... -.+.  
T Consensus       555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e--  624 (929)
T KOG2062|consen  555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------QLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE--  624 (929)
T ss_pred             hHHHhhcccccccchHHHHHHHHHheeeEecChh-------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH--
Confidence            4555555544455567777788888888888776       46788888888788999999999999877643 1111  


Q ss_pred             HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHH
Q 009647          218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE  284 (530)
Q Consensus       218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~  284 (530)
                          +|..|-.+.+++..=++..|+-+++-+.-..++..++.   ..++...+.+++.+..++....
T Consensus       625 ----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk---v~~frk~l~kvI~dKhEd~~aK  684 (929)
T KOG2062|consen  625 ----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK---VNGFRKQLEKVINDKHEDGMAK  684 (929)
T ss_pred             ----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch---HHHHHHHHHHHhhhhhhHHHHH
Confidence                23333344445555566667777765443333333333   3577788888887665554433

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.33  E-value=0.31  Score=36.72  Aligned_cols=55  Identities=24%  Similarity=0.411  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~  428 (530)
                      .|.|+|+++++++ ++..++.+.+.++++.++++.. ++...+|--|.++|+-++..
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T   59 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST   59 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence            5789999999976 4566777778899999999986 56678999999999888763

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.95  E-value=7.8  Score=43.34  Aligned_cols=207  Identities=18%  Similarity=0.158  Sum_probs=117.5

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-----ChhHHHHHHHHHHHhhcCCC
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~~~~  253 (530)
                      +...++.-|.+....+.-..-.+.++++          +.+.|++..++.++.+-     .......+...|...|.-  
T Consensus        85 AtE~~v~~l~~~~~~~~d~e~~~~~~~v----------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv--  152 (802)
T PF13764_consen   85 ATEEFVESLEDDSEEEEDPEQEFKIASV----------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV--  152 (802)
T ss_pred             cchhhHhhccCccccccCHHHHHHHHHH----------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--
Confidence            7888888886633222222223333332          33578999999988742     346667777777777754  


Q ss_pred             CCchhhHHHhhchHHHHHHHhc----cCC----HHHHHHHHHHHHHhhcCCc-hhHH---HHHhc--------CchHHHH
Q 009647          254 PKPATELIKVDGLLDAILRHLK----RAD----EELTTEVAWVVVYLSALSN-VATS---LLVKS--------GVLQLLV  313 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~----~~d----~~v~~~a~~~L~~L~~~~~-~~~~---~i~~~--------g~l~~Lv  313 (530)
                       +..+..+...++++.|++.+.    .+.    +++....+..+--|..... ....   .....        .-+..++
T Consensus       153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL  231 (802)
T PF13764_consen  153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL  231 (802)
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence             234555556899999988775    333    4565555555555543211 0010   00011        1144455


Q ss_pred             HHHhc---CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-----CcHhHHHHHHHHHHHHhc
Q 009647          314 ERLAT---SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-----EHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       314 ~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-----~~~~i~~~A~~~Lsnl~~  385 (530)
                      +.+..   ..++.+....++.|.+++.|+++..+.+++.       +-|. +.+=.-     .+..+.   +-++..|+.
T Consensus       232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-------F~p~-l~f~~~D~~~~~~~~~~---Le~F~~i~~  300 (802)
T PF13764_consen  232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-------FKPY-LDFDKFDEEHSPDEQFK---LECFCEIAE  300 (802)
T ss_pred             HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-------HHHh-cChhhcccccCchHHHH---HHHHHHHHh
Confidence            55531   1356778899999999999998877766641       2222 222111     111222   334444443


Q ss_pred             C------CHHHHHHHHhCCcHHHHHHHhcC
Q 009647          386 G------SVEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       386 ~------~~~~~~~li~~~~l~~Li~lL~~  409 (530)
                      +      .....+.+++.|++...++.|..
T Consensus       301 ~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~  330 (802)
T PF13764_consen  301 GIPNNSNGNRLKDKILESGIVQDAIDYLLK  330 (802)
T ss_pred             cCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence            3      23566778899999988888844

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.92  E-value=7.7  Score=38.90  Aligned_cols=159  Identities=16%  Similarity=0.154  Sum_probs=112.8

Q ss_pred             hHHHHHHHhccCcHhHHHHHHHHHHHHhc-CCHHHHHHHHhC-Cc-HHHHHHHhcCC-----C--------hhHHHHHHH
Q 009647          357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA-GSVEHKQLIHSS-EA-LALLLHLLSTS-----P--------FDIKKEVAY  420 (530)
Q Consensus       357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~-~~~~~~~~li~~-~~-l~~Li~lL~~~-----~--------~~v~~eA~~  420 (530)
                      -+..+.+.|.+.++.+...++..+..++. .+......+... +. .+.+..++...     +        +++|...+.
T Consensus        57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            37788888988888888899999999998 666667776654 33 45566666321     1        278888888


Q ss_pred             HHHHhcCCCCCCCCCchhHHHHHHH-HHhcCChHHHHhhhccCCHHHHHHHHHHHHH-HHccCCCCc-chhHHHHhchHH
Q 009647          421 VLGNLCVSPTEGEGKPKLIQEHLVS-LVGRGCLSGFIDLVRSADIEAARLGLQFMEL-VLRGMPNHE-GTKLVEREDGID  497 (530)
Q Consensus       421 aL~nl~~~~~~~~~~~~~~~~~~~~-l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~-il~~~~~~~-~~~~i~~~ggl~  497 (530)
                      .+..+....     .|    ..... |.+.+.+..++.-|..++++++..+|++|.. ++....-.. ....+.....+.
T Consensus       137 F~Lsfl~~~-----~~----~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~  207 (330)
T PF11707_consen  137 FWLSFLSSG-----DP----ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS  207 (330)
T ss_pred             HHHHHHccC-----CH----HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence            776666542     22    33444 4567889999999999889999999999984 654321111 123445566888


Q ss_pred             HHHHHhcCCcH----HHHHHHHHHHHhhcCC
Q 009647          498 AMERFQFHENE----DLRNMANGLVDKYFGE  524 (530)
Q Consensus       498 ~L~~L~~~~~~----~i~~~A~~il~~~f~~  524 (530)
                      +|..|-..+++    .+.+.+.+.+..++.+
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            88888888877    9999999999887644

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.91  E-value=7.8  Score=41.83  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=76.2

Q ss_pred             hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-Cc
Q 009647          219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SN  297 (530)
Q Consensus       219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~  297 (530)
                      -.|.+..+++-..+++..++..++-.|.-+... ... ..+-+ -.+....+..-+.+..+.|+..|..||+++-.. .+
T Consensus        83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~e-idd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAE-IDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccc-cCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            345566677777788999999999999888852 222 22332 356677777777788889999999999999842 22


Q ss_pred             hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhh
Q 009647          298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN  334 (530)
Q Consensus       298 ~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~n  334 (530)
                      +.      ..++..++.++...++++|+..|+..|.+
T Consensus       160 ee------~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  160 EE------CPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             Cc------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            22      24566777778778899999988766553

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=1  Score=49.28  Aligned_cols=221  Identities=12%  Similarity=0.133  Sum_probs=131.9

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHh
Q 009647          184 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKV  263 (530)
Q Consensus       184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~  263 (530)
                      +..+.+ +.+.++..++..|..+.... +-...+...+++...+..+++.++-+.-+|+..+..||.-.          .
T Consensus       733 i~sl~d-~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------~  800 (982)
T KOG4653|consen  733 ISSLHD-DQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------P  800 (982)
T ss_pred             HHHhcC-CcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc----------c
Confidence            333433 55678999999999998743 55566778899999999999999999999999999998531          2


Q ss_pred             hchHHHHHHHhcc-CC---HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647          264 DGLLDAILRHLKR-AD---EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  339 (530)
Q Consensus       264 ~~~l~~L~~lL~~-~d---~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  339 (530)
                      ..++|-+...-.+ .+   ++.+..+-.++.++...-.+....- ..-++...+..+ ++++...+..++..+|+++.-.
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGV-REPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHH
Confidence            3566776663321 11   2222222233333332111111111 112233333333 3556666889999999998655


Q ss_pred             ccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHHHHHHHH---hCCcHHHHHHHh-cCCChhH
Q 009647          340 SSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIH---SSEALALLLHLL-STSPFDI  414 (530)
Q Consensus       340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~~~~~li---~~~~l~~Li~lL-~~~~~~v  414 (530)
                      .-+....+       ..++..++.+... +.+-+|+.|+..+..+-.|.....-.+.   ..+....+.... .+++..+
T Consensus       879 a~~vsd~~-------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~  951 (982)
T KOG4653|consen  879 AFQVSDFF-------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGL  951 (982)
T ss_pred             hhhhhHHH-------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence            43333222       2355556666554 4568999999999999887644333322   112344444444 3445557


Q ss_pred             HHHHHHHHHHh
Q 009647          415 KKEVAYVLGNL  425 (530)
Q Consensus       415 ~~eA~~aL~nl  425 (530)
                      +..|+.++--+
T Consensus       952 klhaql~leei  962 (982)
T KOG4653|consen  952 KLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHHH
Confidence            77777666444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.82  E-value=4.3  Score=44.97  Aligned_cols=197  Identities=15%  Similarity=0.138  Sum_probs=118.7

Q ss_pred             HHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH--HHHHHHh
Q 009647          288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI--AVLVKCL  365 (530)
Q Consensus       288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l--~~L~~lL  365 (530)
                      +|++++...++.+..+++.|+...+...+......++...+++.++|++...+........       ..+  ..+..++
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~-------~~~~~~~f~~~~  566 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIF-------EFIDFSVFKVLL  566 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHH-------HHHHHHHHHHHH
Confidence            7888998889999999999999999999975667788899999999999665433221111       111  1333344


Q ss_pred             ccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647          366 KSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV  444 (530)
Q Consensus       366 ~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~  444 (530)
                      ...+. +.-..|+.+++.+...+++.    .+.               .-+..+...+......-.    +     .. .
T Consensus       567 ~~w~~~ersY~~~siLa~ll~~~~~~----~~~---------------~~r~~~~~~l~e~i~~~~----~-----~~-~  617 (699)
T KOG3665|consen  567 NKWDSIERSYNAASILALLLSDSEKT----TEC---------------VFRNSVNELLVEAISRWL----T-----SE-I  617 (699)
T ss_pred             hhcchhhHHHHHHHHHHHHHhCCCcC----ccc---------------cchHHHHHHHHHHhhccC----c-----cc-e
Confidence            43333 55566666776666554320    011               112222222222221100    0     00 1


Q ss_pred             HHHhcCChHH-HHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-cHHHHHHHHHHHHhh
Q 009647          445 SLVGRGCLSG-FIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKY  521 (530)
Q Consensus       445 ~l~~~g~i~~-L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~~~i~~~A~~il~~~  521 (530)
                      .......+.+ +..++.. ..+..+.-|++++.+++..-++  +++.+.+.||+..++++..+. -.++.+.+..+++..
T Consensus       618 ~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  618 RVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE--YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             eehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh--hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            1122223333 5555554 4566777889999999876544  788999999999998775433 556677777777655


Q ss_pred             c
Q 009647          522 F  522 (530)
Q Consensus       522 f  522 (530)
                      .
T Consensus       696 ~  696 (699)
T KOG3665|consen  696 E  696 (699)
T ss_pred             c
Confidence            4

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.79  E-value=1.3  Score=48.16  Aligned_cols=136  Identities=19%  Similarity=0.201  Sum_probs=81.6

Q ss_pred             chHHHHHHHhccC----CHHHHHHHHHHHHHhhc---CCchhHHHHHhcCchHHHHHHHhc---CCCccchhhhHHHHhh
Q 009647          265 GLLDAILRHLKRA----DEELTTEVAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLAT---SNSLQLLIPVLRSLGN  334 (530)
Q Consensus       265 ~~l~~L~~lL~~~----d~~v~~~a~~~L~~L~~---~~~~~~~~i~~~g~l~~Lv~lL~~---~~~~~v~~~al~~L~n  334 (530)
                      ..+..+..++.++    .+.+...++-+++.+..   ...+.....+-...++.+.+.|..   ..+...+.-++++|||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            4456666777643    34566666666665553   111111111112355666665542   3455556789999999


Q ss_pred             hhcCCccccchhcccCCCcchhhHHHHHHHhc-c--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc--C
Q 009647          335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-S--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--T  409 (530)
Q Consensus       335 l~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~--~  409 (530)
                      +-..                 ..++.|..++. .  ....+|..|+|+|..++...+..+        -+.|+.++.  .
T Consensus       473 ~g~~-----------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~  527 (574)
T smart00638      473 AGHP-----------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRA  527 (574)
T ss_pred             cCCh-----------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCC
Confidence            8532                 35566666665 2  245899999999999976554443        345666664  3


Q ss_pred             CChhHHHHHHHHHHHh
Q 009647          410 SPFDIKKEVAYVLGNL  425 (530)
Q Consensus       410 ~~~~v~~eA~~aL~nl  425 (530)
                      .++++|..|..+|...
T Consensus       528 e~~EvRiaA~~~lm~t  543 (574)
T smart00638      528 EPPEVRMAAVLVLMET  543 (574)
T ss_pred             CChHHHHHHHHHHHhc
Confidence            5678898888887653

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.77  E-value=1.5  Score=46.49  Aligned_cols=126  Identities=18%  Similarity=0.194  Sum_probs=80.5

Q ss_pred             CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 009647          320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA  399 (530)
Q Consensus       320 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~  399 (530)
                      ++.....-|...|......-++..           ..++..++.|..+.+..||+.|+..|..+|..+++.+..+.+   
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~-----------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD---   99 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQ-----------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD---   99 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGH-----------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH---
Confidence            456667777778887776655432           357888999999999999999999999999998888777654   


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc---cCCHHHHHHHHHHHHH
Q 009647          400 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMEL  476 (530)
Q Consensus       400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~i~~~~L~~L~~  476 (530)
                        .|+++|++.++.....+-++|..+....                  ..+.+..|++-+.   ++|..+...++.+|..
T Consensus       100 --vL~QlL~tdd~~E~~~v~~sL~~ll~~d------------------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  100 --VLVQLLQTDDPVELDAVKNSLMSLLKQD------------------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             --HHHHHTT---HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             --HHHHHHhcccHHHHHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence              7999999888766655666665554311                  1233445555554   5777788888888865


Q ss_pred             HHc
Q 009647          477 VLR  479 (530)
Q Consensus       477 il~  479 (530)
                      -+.
T Consensus       160 kl~  162 (556)
T PF05918_consen  160 KLK  162 (556)
T ss_dssp             HGG
T ss_pred             HHh
Confidence            554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.72  E-value=3.3  Score=39.40  Aligned_cols=183  Identities=12%  Similarity=0.119  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHH-hcCchHHHHHHHhc------CCC-----ccchhhhHHHHhhhhcCCccccch
Q 009647          278 DEELTTEVAWVVVYLSALSNVATSLLV-KSGVLQLLVERLAT------SNS-----LQLLIPVLRSLGNLVAGDSSTISD  345 (530)
Q Consensus       278 d~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~l~~Lv~lL~~------~~~-----~~v~~~al~~L~nl~~~~~~~~~~  345 (530)
                      +++.+++|+.-|+.--+..++-.-.+- .-|.+..|++-+..      .+.     ..-...|+..+..++++++... .
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~-~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM-P   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH-H
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH-H
Confidence            456666666655555443333322222 34555555443321      111     0123456777777777665443 3


Q ss_pred             hcccCCCcchhhHHHHHHHhccCc-----HhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          346 VLVPGHGITDQVIAVLVKCLKSEH-----RVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       346 ~i~~g~~~~~~~l~~L~~lL~~~~-----~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                      +++      ..+.-.|..+|+..+     +.+|-.+..+++.+... +++.+..+.+..++|..++.++.++.-.|..|.
T Consensus        87 Fl~------a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAt  160 (262)
T PF04078_consen   87 FLK------AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVAT  160 (262)
T ss_dssp             HHH------TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHH
T ss_pred             HHH------cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence            443      245555666664432     47899999999999874 567788889999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHh--------cCChHHHHh-hhccCCHHHHHHHHHHHHHHH
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVG--------RGCLSGFID-LVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--------~g~i~~L~~-lL~~~d~~i~~~~L~~L~~il  478 (530)
                      +.+..+..+.           .-..++.+        ..++..++. +.+.+++.+.+.++++-..+.
T Consensus       161 fIlqKIL~dd-----------~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs  217 (262)
T PF04078_consen  161 FILQKILLDD-----------VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS  217 (262)
T ss_dssp             HHHHHHHHSH-----------HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcch-----------hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence            9998886542           22233322        233444443 444577888888888777765

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.68  E-value=0.78  Score=51.76  Aligned_cols=142  Identities=18%  Similarity=0.191  Sum_probs=107.9

Q ss_pred             chHHHHHHHhc----cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647          265 GLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       265 ~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  340 (530)
                      .+.|.++.+.+    ..||+++..|.-||+.+..-+.+.+.     .-+|.|...+..++++-++.++.-++|-++-.-+
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            35666777764    46789999999999988874443332     3478888888789999999999999998876544


Q ss_pred             cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647          341 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY  420 (530)
Q Consensus       341 ~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~  420 (530)
                      ..    ++       -.-+.|..-|.+.++.+|+.|..+++++...+.     +--.|-++.+...+.+++..++.-|-.
T Consensus       994 nl----ie-------~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen  994 NL----IE-------PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred             cc----cc-------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence            33    32       356778888999999999999999999976542     223578889999999999988887775


Q ss_pred             HHHHhcC
Q 009647          421 VLGNLCV  427 (530)
Q Consensus       421 aL~nl~~  427 (530)
                      ..-.+..
T Consensus      1058 FF~Els~ 1064 (1251)
T KOG0414|consen 1058 FFKELSS 1064 (1251)
T ss_pred             HHHHhhh
Confidence            5555543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.53  E-value=2.7  Score=39.92  Aligned_cols=139  Identities=17%  Similarity=0.211  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC----ccchhhhHHHHhhhhcCCcccc-chhcccCCCcchh
Q 009647          282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQ  356 (530)
Q Consensus       282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~~~-~~~i~~g~~~~~~  356 (530)
                      +.+|+..|..++. +++....++++.+.-.|..+|.....    +.++..++..+|.++..++... ..++      +..
T Consensus        67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl------~tE  139 (262)
T PF04078_consen   67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL------QTE  139 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH------hhc
Confidence            3345555556666 67777888899988888888853221    3456789999999998665543 4444      457


Q ss_pred             hHHHHHHHhccCcHhHHHHHHHHHHHHhcC---------CHHHHHHHHhCCcHHHHHH-HhcCCChhHHHHHHHHHHHhc
Q 009647          357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---------SVEHKQLIHSSEALALLLH-LLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~---------~~~~~~~li~~~~l~~Li~-lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      ++|...+.+..++.--|..|.+++..|...         +.+...++..  ++..++. +...+++.+-|..+++-..++
T Consensus       140 iiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLs  217 (262)
T PF04078_consen  140 IIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLS  217 (262)
T ss_dssp             HHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence            999999999999888889999999987653         3334444433  4445444 346778899999999999998


Q ss_pred             CCC
Q 009647          427 VSP  429 (530)
Q Consensus       427 ~~~  429 (530)
                      .++
T Consensus       218 dnp  220 (262)
T PF04078_consen  218 DNP  220 (262)
T ss_dssp             TST
T ss_pred             cCH
Confidence            764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.44  E-value=0.38  Score=52.88  Aligned_cols=169  Identities=18%  Similarity=0.177  Sum_probs=92.9

Q ss_pred             hhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHHHHHHHhhcC---
Q 009647          223 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSAL---  295 (530)
Q Consensus       223 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~---  295 (530)
                      +..+..++.+....-.+ +.+.|..|.... ..|..      ..+..+..++..    .++.+...|+-+++.|...   
T Consensus       397 v~~i~~~I~~~~~~~~e-a~~~l~~l~~~~-~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  397 VKFIKDLIKSKKLTDDE-AAQLLASLPFHV-RRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHTT-S-HHH-HHHHHHHHHHT------H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHHHhhc-CCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            44555666655433333 333344444332 12323      344555555542    3455666666666666531   


Q ss_pred             Cc------hhHHHHHhcCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc
Q 009647          296 SN------VATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK  366 (530)
Q Consensus       296 ~~------~~~~~i~~~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~  366 (530)
                      ..      ......+...+++.+...|.   ...+..-+..++++|||+-..                 ..++.|..++.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------------~~i~~l~~~i~  531 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------------ESIPVLLPYIE  531 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------------GGHHHHHTTST
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------------hhhHHHHhHhh
Confidence            11      00011122345566666664   345556778899999998421                 37788888886


Q ss_pred             cC---cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHH
Q 009647          367 SE---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGN  424 (530)
Q Consensus       367 ~~---~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~n  424 (530)
                      ..   ...+|..|+|++..++...+..+        .+.|..++.+  .++++|..|..+|..
T Consensus       532 ~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  532 GKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             TSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            65   56899999999999977666543        4566777744  457788888877765

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.38  E-value=3.7  Score=39.19  Aligned_cols=94  Identities=12%  Similarity=0.081  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC
Q 009647          156 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN  233 (530)
Q Consensus       156 ~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~  233 (530)
                      ..|+..|.-++--++..+...-  .++..|+.+|.....+.++..++.+|-.+..|++.+...+-+.+++..+++++++.
T Consensus       109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~  188 (257)
T PF08045_consen  109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK  188 (257)
T ss_pred             HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence            3467788777766665544444  58999999996556789999999999999999999999999999999999999964


Q ss_pred             --ChhHHHHHHHHHHHhh
Q 009647          234 --KGSTVRTAAWALSNLI  249 (530)
Q Consensus       234 --~~~~~~~a~~~L~nL~  249 (530)
                        +.+++-.++-.|.-..
T Consensus       189 ~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  189 STDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccHHHhHHHHHHHHHHH
Confidence              5677666666665444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.37  E-value=2.2  Score=39.94  Aligned_cols=113  Identities=15%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh-------
Q 009647          104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL-------  176 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i-------  176 (530)
                      +++.+..++.++..+..++..++..-+......++||..++.+..++ ...+.-|+.++..|-.++.. ...+       
T Consensus       135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~G-L~YiCqt~eRF  212 (293)
T KOG3036|consen  135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVG-LYYICQTAERF  212 (293)
T ss_pred             CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhcccc-HHHHHHhHHHH
Confidence            45678889999999999988776655566678999999999999876 45567799999999876642 1111       


Q ss_pred             --c-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647          177 --L-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  219 (530)
Q Consensus       177 --~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  219 (530)
                        + ..+..++..|.+.+++.+...++.+.-+++. ++..|..+..
T Consensus       213 ~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~  257 (293)
T KOG3036|consen  213 SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRS  257 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence              1 2344555555555889999999999999985 6777766554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.04  E-value=0.27  Score=43.54  Aligned_cols=148  Identities=16%  Similarity=0.203  Sum_probs=92.9

Q ss_pred             cHHHHHhhcC-CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          180 LPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       180 v~~L~~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      +..++..|.. ...++++.++.-++..+-   +..++...+ -+-+.+-.++...+.+-...+..++..+..+. |....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHH
Confidence            4456665553 356789999999998884   233333221 12233334445444556777888888887653 44455


Q ss_pred             hHHHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCcc-chhhhHHHHhh
Q 009647          259 ELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ-LLIPVLRSLGN  334 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~-v~~~al~~L~n  334 (530)
                      .++...|+++.+..+..  .++..+...++.+|..=|. +. .+...+...+++-|-+.+..+++.. ++..|+-.|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            56667899999999999  7788888888888876653 33 4444444556777887774344444 66666655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.88  E-value=1.6  Score=39.47  Aligned_cols=145  Identities=19%  Similarity=0.158  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCchhh----HHH-----hhchHHHHH-HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 009647          237 TVRTAAWALSNLIKGPDPKPATE----LIK-----VDGLLDAIL-RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS  306 (530)
Q Consensus       237 ~~~~a~~~L~nL~~~~~~~~~~~----~v~-----~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~  306 (530)
                      ++.+|+.+|..+++..+++...-    ++.     ..+.-+.|+ -++.++++.++..|+.+|..|-++...+....-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            56677778877777633332111    111     112223333 44567788999999999999998765554433321


Q ss_pred             C-------------------chHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc
Q 009647          307 G-------------------VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS  367 (530)
Q Consensus       307 g-------------------~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~  367 (530)
                      .                   +-..|+..|....+..+....+++++.++...+...-.   .|  .-..++..+..++.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~--ll~~~v~~v~~~l~~  156 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PG--LLTEVVTQVRPLLRH  156 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---Hh--HHHHHHHHHHHHHhc
Confidence            1                   11245555655567888899999999999887754311   00  012455666677888


Q ss_pred             CcHhHHHHHHHHHHHHhcC
Q 009647          368 EHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       368 ~~~~i~~~A~~~Lsnl~~~  386 (530)
                      .|++++..+.-+++.+.+-
T Consensus       157 ~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  157 RDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             CCCcHHHHHHHHHHHHHcC
Confidence            9999999999999988654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.68  E-value=9.2  Score=36.89  Aligned_cols=218  Identities=14%  Similarity=0.092  Sum_probs=131.7

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC--CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                      |=.+|.+ +++.+|..|+.+|+.+...-+.   ..+...-+..|+.++.+  .|......++.++..|.+.+..  ..+.
T Consensus         4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp~---~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~--~~~~   77 (262)
T PF14500_consen    4 LGEYLTS-EDPIIRAKALELLSEVLERLPP---DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF--SPES   77 (262)
T ss_pred             hhhhhCC-CCHHHHHHHHHHHHHHHHhCCH---hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC--Chhh
Confidence            3356666 7899999999999998864432   22334446666666553  3566666667778777755421  1111


Q ss_pred             HHhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          261 IKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       261 v~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                        ...++..+.+-.+  .-....+..+...|..+.....+....+ ..+.+..+++.+....||..+.-+...+..+...
T Consensus        78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~  154 (262)
T PF14500_consen   78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE  154 (262)
T ss_pred             --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence              1233333333222  1123567888888888887544333222 2456777888787777888888888888877655


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhc--------c--CcH-h-HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLK--------S--EHR-V-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  406 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~--------~--~~~-~-i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l  406 (530)
                      -+.  .           ...+.+...+.        .  +++ . .+..-..+|.+....++....     -.+|.|++-
T Consensus       155 ~~~--~-----------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleK  216 (262)
T PF14500_consen  155 FDI--S-----------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEK  216 (262)
T ss_pred             ccc--c-----------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHH
Confidence            442  1           12223333221        1  122 2 233444455555455544322     268999999


Q ss_pred             hcCCChhHHHHHHHHHHHhcC
Q 009647          407 LSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       407 L~~~~~~v~~eA~~aL~nl~~  427 (530)
                      |.++...++..++.+|..++.
T Consensus       217 L~s~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  217 LDSTSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             HcCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999988765

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.67  E-value=14  Score=38.28  Aligned_cols=262  Identities=15%  Similarity=0.083  Sum_probs=136.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--hhhHHhh
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--QEETKAL  176 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~--~~~~~~i  176 (530)
                      +.+...+++...+-.|+..|.+..+.-  |..-.-...-.+..++.-|-.+.+.+++.||..+|+.+...-  .+.....
T Consensus       263 la~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~  340 (533)
T KOG2032|consen  263 LANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL  340 (533)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence            334556777788889999999987752  322112224466667777766666888999999999887321  1122233


Q ss_pred             cCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHH--hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          177 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLL--SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       177 ~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      +++.-.+..++.+ .+++++..|...+|.++.- +...++.+.  -.+...+++-.|+++++.+.+++ .+....|.   
T Consensus       341 l~ialrlR~l~~s-e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC-r~~~~~c~---  415 (533)
T KOG2032|consen  341 LNIALRLRTLFDS-EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC-RSELRTCY---  415 (533)
T ss_pred             hhHHHHHHHHHHh-cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH-HHHHHhcC---
Confidence            3555566667766 7889999998877776631 123344333  22344556666777777665543 33334442   


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHH-HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHH
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEEL-TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL  332 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L  332 (530)
                      |...++.  ..++++..+....   +.. .-..-||+ .+....++.......+     ..-++ ++.-+.++..+...-
T Consensus       416 p~l~rke--~~~~~q~~ld~~~---~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f-~sswe~vr~aavl~t  483 (533)
T KOG2032|consen  416 PNLVRKE--LYHLFQESLDTDM---ARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIF-SSSWEQVREAAVLKT  483 (533)
T ss_pred             chhHHHH--HHHHHhhhhHHhH---HHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhhe-ecchHHHHHHHHHHH
Confidence            2222222  2344443221110   000 11122322 1222122222222111     11122 234445555555555


Q ss_pred             hhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647          333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  384 (530)
Q Consensus       333 ~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~  384 (530)
                      ++....-..+.....+     -..+...+-.+...+-+++++.|..++.-+.
T Consensus       484 ~~~vd~l~~~~c~~~d-----~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  484 TRSVDSLVRAACSSAD-----GLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHhHHHHHHHhh-----HHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            5555443333222221     1234555666667777888888888876553

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.63  E-value=3.8  Score=41.93  Aligned_cols=168  Identities=15%  Similarity=0.064  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhc-CChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc--CChhhhHhhc
Q 009647          155 LLEAAWCLTNIAA-GKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMM  230 (530)
Q Consensus       155 ~~eA~~~L~nia~-~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~lL  230 (530)
                      +.+|..-|..+.. +....-...+ ..+-.+++.|+.+.+..++..|+..|+.++...+   ..+.+.  -+|..++..-
T Consensus       304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~---~~l~DstE~ai~K~Leaa  380 (516)
T KOG2956|consen  304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP---ARLFDSTEIAICKVLEAA  380 (516)
T ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---HhhhchHHHHHHHHHHHH
Confidence            3456664555543 4333333333 3677888889886788899999999999997432   122222  2344444444


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc-hhHHHHHhcCch
Q 009647          231 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSLLVKSGVL  309 (530)
Q Consensus       231 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~l  309 (530)
                      .+.+.++.+.|.-++..+.....|.  ..       +..+..++...|......++..+..++..-. +....+ -..+.
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~--~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~l-l~dia  450 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPL--QC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNL-LPDIA  450 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCch--hH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHh-hhhhh
Confidence            5666666666665544433333332  22       2234444455777777777778878876322 222112 24678


Q ss_pred             HHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          310 QLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       310 ~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                      |.+++.. ++.+..++..|..||-.+.
T Consensus       451 P~~iqay-~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  451 PCVIQAY-DSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence            8888877 5778889999999998876

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.61  E-value=11  Score=36.80  Aligned_cols=211  Identities=15%  Similarity=0.227  Sum_probs=139.6

Q ss_pred             HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC--CchhhHH-HhhchHHHHHHHhccCCHHHHHHHHHHHH
Q 009647          214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELI-KVDGLLDAILRHLKRADEELTTEVAWVVV  290 (530)
Q Consensus       214 r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~v-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  290 (530)
                      ...+..+|.+..|+..+..-+.+.+..++....|+-+....  .+..+++ .....++.|++--.. .+++...+-..|.
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            34566788999999999888888889999999998864321  1222222 122344444444111 2556555555555


Q ss_pred             HhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH
Q 009647          291 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR  370 (530)
Q Consensus       291 ~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~  370 (530)
                      ...+ .+.-...+....-+...-.++ ..+.-++...|..+...+.+........++...  .+.-+.++--.++.+++.
T Consensus       151 Ecir-he~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n--~d~ff~e~~~~Ll~s~Ny  226 (342)
T KOG1566|consen  151 ECIR-HEFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN--YDNFFAEVYEKLLRSENY  226 (342)
T ss_pred             HHHh-hHHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC--hhhhHHHHHHHHhcccce
Confidence            5554 444556666676777777666 467778888888888888876654443333210  001123446678889999


Q ss_pred             hHHHHHHHHHHHHhcCCH--H-HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647          371 VLKKEAAWVLSNIAAGSV--E-HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       371 ~i~~~A~~~Lsnl~~~~~--~-~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      -++..+...++.+..+.+  . ..+.+-+..-+..+..+|++++..+|-+|--+..-+..++
T Consensus       227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            999999999999876532  2 2233434456888999999999999999999988888765

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.51  E-value=0.6  Score=49.67  Aligned_cols=132  Identities=19%  Similarity=0.158  Sum_probs=98.8

Q ss_pred             CChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhh
Q 009647          150 SPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM  229 (530)
Q Consensus       150 ~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l  229 (530)
                      +++++|..|..+|..+-+-+.+   .+..-+|.|+..+..+++|.+|.+|+-.||.++.-.....+.     .-..|.+-
T Consensus       908 sd~~lq~aA~l~L~klMClS~~---fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrr  979 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFE---FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRR  979 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHH
Confidence            4578888888888877654433   233478999999997799999999999999877533222222     23456666


Q ss_pred             cCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 009647          230 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS  296 (530)
Q Consensus       230 L~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  296 (530)
                      |.+.+..++++|..++.+|.-..       .+...|-++.++.+|.++|.++..-|-..+..++..+
T Consensus       980 L~De~~~V~rtclmti~fLilag-------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         980 LGDEDADVRRTCLMTIHFLILAG-------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             hcchhhHHHHHHHHHHHHHHHcc-------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence            77788999999999999987432       2235799999999999999988888777777777633

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.51  E-value=1.9  Score=50.09  Aligned_cols=130  Identities=17%  Similarity=0.247  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647          281 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV  360 (530)
Q Consensus       281 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~  360 (530)
                      ...++.|+..+|+...+ ..+ -+ .+.+..++..| ..+...+++.|++||+.|+.-++....         ...+-..
T Consensus       793 d~~~a~li~~~la~~r~-f~~-sf-D~yLk~Il~~l-~e~~ialRtkAlKclS~ive~Dp~vL~---------~~dvq~~  859 (1692)
T KOG1020|consen  793 DDDDAKLIVFYLAHARS-FSQ-SF-DPYLKLILSVL-GENAIALRTKALKCLSMIVEADPSVLS---------RPDVQEA  859 (1692)
T ss_pred             cchhHHHHHHHHHhhhH-HHH-hh-HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhcChHhhc---------CHHHHHH
Confidence            35678888888886433 111 11 25677778777 578889999999999999987754221         1234445


Q ss_pred             HHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          361 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       361 L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      +..-+.+....||..|.-.++......++.+.+.     ...+..-..+....|||.|+..++-+|..
T Consensus       860 Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e  922 (1692)
T KOG1020|consen  860 VHGRLNDSSASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEE  922 (1692)
T ss_pred             HHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence            5556667778999999999999888777765544     34566666777789999999999999974

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.46  E-value=12  Score=37.39  Aligned_cols=160  Identities=21%  Similarity=0.214  Sum_probs=109.8

Q ss_pred             hHHHHHHHhcCCCccchhhhHHHHhhhhc-CCccccchhcccCCCcchhhHHHHHHHhccCc-------------HhHHH
Q 009647          309 LQLLVERLATSNSLQLLIPVLRSLGNLVA-GDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-------------RVLKK  374 (530)
Q Consensus       309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~-~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~-------------~~i~~  374 (530)
                      ++.+.+.| .+....+..++++.|..|+. ........++..=    .--.+.|..++....             +++|.
T Consensus        58 ~k~lyr~L-~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f----d~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~  132 (330)
T PF11707_consen   58 LKLLYRSL-SSSKPSLTNPALRLLTAIVSFDGGALAREVLRSF----DFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRT  132 (330)
T ss_pred             HHHHHHHh-CcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhc----CCchhhHHHHhccccccccccccccccCcCHHH
Confidence            66677777 45667778899999999998 4434444444310    112455566664321             27888


Q ss_pred             HHHH-HHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          375 EAAW-VLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       375 ~A~~-~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                      ..+. +++.+..+++.....+++ .+.+..+..-|..+++++....+.+|..-.....   +-|   ......+.+..++
T Consensus       133 ~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~---~v~---r~~K~~~fn~~~L  206 (330)
T PF11707_consen  133 NFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS---SVS---RSTKCKLFNEWTL  206 (330)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC---CCC---hhhhhhhcCHHHH
Confidence            7774 666666777777777765 4678888898988888999999988885443221   111   2334566788899


Q ss_pred             HHHHhhhccCCH----HHHHHHHHHHHHHHc
Q 009647          453 SGFIDLVRSADI----EAARLGLQFMELVLR  479 (530)
Q Consensus       453 ~~L~~lL~~~d~----~i~~~~L~~L~~il~  479 (530)
                      ..|..+....++    .+...+-++|..++.
T Consensus       207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  207 SQLASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            999998888777    788888888888875

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.37  E-value=3  Score=41.13  Aligned_cols=170  Identities=18%  Similarity=0.111  Sum_probs=114.5

Q ss_pred             ChhhhH-hhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCC-chh
Q 009647          222 ALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS-NVA  299 (530)
Q Consensus       222 ~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~  299 (530)
                      .+..|+ ..++++++.+++.++.||+-.|--+.     +.  ....++.+...+..++++++..|+.++..+.... ...
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~--a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----EL--AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            344444 56778899999999999998885431     22  3466788888887788999999999998887522 122


Q ss_pred             HHHHH-------hcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc----C
Q 009647          300 TSLLV-------KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E  368 (530)
Q Consensus       300 ~~~i~-------~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~----~  368 (530)
                      .....       ...++..+...| .+.+++++..|+..++.+.-..--..          ...++..|+-+.-+    +
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~----------~~~vL~~Lll~yF~p~t~~  168 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD----------PPKVLSRLLLLYFNPSTED  168 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHcCcccCC
Confidence            21111       234566777777 46688899999999999875542221          03466666555533    2


Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS  410 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~  410 (530)
                      +..+|..-.+.+-..+..++.+ |..+...++|.+-.+....
T Consensus       169 ~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  169 NQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             cHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            4578888888888888877655 4555555778877777543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.37  E-value=1.5  Score=47.13  Aligned_cols=200  Identities=19%  Similarity=0.222  Sum_probs=123.9

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC------------------ChhHHHHHHHHHHHhhcCCCCCch
Q 009647          196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN------------------KGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       196 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~------------------~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      +.+-...|.++..+   +-..+..+.++|.|+..+.+.                  ..+......|+|.-+.+...++..
T Consensus       290 Ks~Flk~Ls~~ip~---fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~  366 (700)
T KOG2137|consen  290 KSSFLKGLSKLIPT---FPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQA  366 (700)
T ss_pred             HHHHHHHHHHhhcc---CCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccc
Confidence            34444455555533   233455555666666655431                  234455667777766653323221


Q ss_pred             hhHH---------------HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc
Q 009647          258 TELI---------------KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL  322 (530)
Q Consensus       258 ~~~v---------------~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~  322 (530)
                      .-++               ....++|.|..-++..+..++..++..+...++.-+   -..+..-++|++.++...+.+.
T Consensus       367 ~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~  443 (700)
T KOG2137|consen  367 LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNL  443 (700)
T ss_pred             hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccch
Confidence            1111               135677777777788888899999988888886433   2234566788888876567788


Q ss_pred             cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647          323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  402 (530)
Q Consensus       323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~  402 (530)
                      .++..++-|++.++..-|  ...++        ..+.++.......++.+......+..++....... +.++..+++|.
T Consensus       444 ~vkvn~L~c~~~l~q~lD--~~~v~--------d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPl  512 (700)
T KOG2137|consen  444 YVKVNVLPCLAGLIQRLD--KAAVL--------DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPL  512 (700)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHhH--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhh
Confidence            899999999999982211  11222        24555556666778888877777777776543332 44556678888


Q ss_pred             HHHHhcCCCh
Q 009647          403 LLHLLSTSPF  412 (530)
Q Consensus       403 Li~lL~~~~~  412 (530)
                      ++.+...+..
T Consensus       513 li~ls~~~~L  522 (700)
T KOG2137|consen  513 LIPLSVAPSL  522 (700)
T ss_pred             hhhhhhcccc
Confidence            8888766553

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.36  E-value=4.4  Score=41.37  Aligned_cols=122  Identities=12%  Similarity=0.247  Sum_probs=87.9

Q ss_pred             hhhHHHHhhhhc---CCccccchhcccCCCcchhhHHHHHHHhccCc---HhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 009647          326 IPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEA  399 (530)
Q Consensus       326 ~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~---~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~  399 (530)
                      ...++++..+..   +.+...+.+++.     ..++..|..++.+..   +.+-..|+-+++.+....|.....+.++|+
T Consensus        78 K~lLk~l~~~~~~~~~~~~~lrnl~D~-----s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   78 KSLLKFLSHAMQHSGGFGDRLRNLIDS-----SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHhccCCCcccccccccch-----hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            345566666666   233344445541     357777888888764   588899999999999998888899999999


Q ss_pred             HHHHHHHhc-CC---ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC
Q 009647          400 LALLLHLLS-TS---PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD  463 (530)
Q Consensus       400 l~~Li~lL~-~~---~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d  463 (530)
                      ++.+++.+. .+   +.++-...--+|+-+|-+.           .-++.+.+.+.++.+++++.+++
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~-----------~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN-----------RGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH-----------HHHHHHHhcChHHHHHHHhCCHH
Confidence            999999887 42   3455555556777777653           33577778899999988887644

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=13  Score=38.48  Aligned_cols=138  Identities=16%  Similarity=0.107  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 009647          191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA  269 (530)
Q Consensus       191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~  269 (530)
                      ++..++..|+.+|+|.+...|.-...... -.+..++. +....+.++.-.+..+|.-+......   ++.  ....++.
T Consensus       270 p~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l--~~~~l~i  343 (533)
T KOG2032|consen  270 PSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDL--ESYLLNI  343 (533)
T ss_pred             chhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cch--hhhchhH
Confidence            66789999999999999864422211111 13444554 44455788888888888777643211   111  2344443


Q ss_pred             ---HHHHhccCCHHHHHHHHHHHHHhhcC---Cchh-HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          270 ---ILRHLKRADEELTTEVAWVVVYLSAL---SNVA-TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       270 ---L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~-~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                         +-.+..+.+++++..+...+..|+.-   ..+. ....+..+..+.+.. | ..+++. ...||+.....+.
T Consensus       344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l-~d~~p~-va~ACr~~~~~c~  415 (533)
T KOG2032|consen  344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-L-QDPNPY-VARACRSELRTCY  415 (533)
T ss_pred             HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-e-CCCChH-HHHHHHHHHHhcC
Confidence               44556788999999998888777742   1111 111122233333332 3 233332 3567777776653

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=92.03  E-value=16  Score=38.54  Aligned_cols=172  Identities=15%  Similarity=0.158  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647          281 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV  360 (530)
Q Consensus       281 v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~  360 (530)
                      ...+.+..+.++..-+......-.-.+++..++.+...+.+......++..+..+++...--...+        ..++..
T Consensus       150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl--------~~~i~v  221 (464)
T PF11864_consen  150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL--------SPCIEV  221 (464)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH--------HHHHHH
Confidence            344444555555543222222111234555555554344455555677777777766543222211        123444


Q ss_pred             HHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC------CChhHHHHHHHHHHHhcCCCCCCCC
Q 009647          361 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCVSPTEGEG  434 (530)
Q Consensus       361 L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~------~~~~v~~eA~~aL~nl~~~~~~~~~  434 (530)
                      |......  .+..+.+-.++.||+.....+       ..+..|..+|..      .+..+-+-|+..+..+..+.. ..+
T Consensus       222 LCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~-~~~  291 (464)
T PF11864_consen  222 LCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG-EQG  291 (464)
T ss_pred             HhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc-cCC
Confidence            4444322  266777778999998643221       145677777732      234566778888888887641 112


Q ss_pred             CchhHHHHHHHHHhc--CChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647          435 KPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       435 ~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~i~~~~L~~L~~il  478 (530)
                      .|        .+--.  -+++.|...++.+++.+-..++..+.+++
T Consensus       292 ~~--------~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  292 YP--------SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             cc--------eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            22        11111  26777788888777766666666666666

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.01  E-value=1.2  Score=40.78  Aligned_cols=125  Identities=16%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHHh----------------cCchHHHHHHHhc-----CCCccchhhhHHHHhhh
Q 009647          277 ADEELTTEVAWVVVYLSALSNVATSLLVK----------------SGVLQLLVERLAT-----SNSLQLLIPVLRSLGNL  335 (530)
Q Consensus       277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~----------------~g~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl  335 (530)
                      ++......+|..|+||+.. ++....+++                ...+..|++++..     .+...-.......+.|+
T Consensus         7 ~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            3444566777888888873 333332322                2355677777754     12233345667778888


Q ss_pred             hcCCccccchhcccCCCcchhh--HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHh---CCcHHHHHHHhc
Q 009647          336 VAGDSSTISDVLVPGHGITDQV--IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS---SEALALLLHLLS  408 (530)
Q Consensus       336 ~~~~~~~~~~~i~~g~~~~~~~--l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~---~~~l~~Li~lL~  408 (530)
                      +.... ..+.+++.    +.+.  +..|+.++.+.+.--|..++.+|.|+|.....+ ..++.   .+++|.|+--|.
T Consensus        86 S~~~~-gR~~~l~~----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   86 SQLPE-GRQFFLDP----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             cCCHH-HHHHHhCc----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            75543 33344432    2334  788888889887777788899999999987555 44443   367777766554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.00  E-value=12  Score=39.26  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=108.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC---CccchhhhHHHHhhhhcCCccccc
Q 009647          268 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTIS  344 (530)
Q Consensus       268 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~  344 (530)
                      ..+..++.+++...+..+...|..++. +......++....+..|..++.+..   ...++...++++..+....- .+.
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW  163 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW  163 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence            446677777777777778888888886 5667778888888888888775221   23556677888777765443 111


Q ss_pred             hhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          345 DVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       345 ~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                      ..+      ...++.....+..-  .+..+-..|+..+-+++.+++...+.+.+.--+..|+..++.++..++..|...+
T Consensus       164 ~~~------~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~  237 (713)
T KOG2999|consen  164 ESV------SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL  237 (713)
T ss_pred             eec------ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence            111      12355555555532  2457788899999999999877778788887899999999999999988877766


Q ss_pred             HHhcCC
Q 009647          423 GNLCVS  428 (530)
Q Consensus       423 ~nl~~~  428 (530)
                      ..+...
T Consensus       238 nal~~~  243 (713)
T KOG2999|consen  238 NALFRK  243 (713)
T ss_pred             HHHHhh
Confidence            666554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=90.97  E-value=1.4  Score=47.17  Aligned_cols=187  Identities=10%  Similarity=0.109  Sum_probs=121.5

Q ss_pred             HhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc
Q 009647          218 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN  297 (530)
Q Consensus       218 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~  297 (530)
                      ++.+++|.|++++..++-.++-..+--+-+....-    ..++ ....++|.+...+.+.++-++..++.++..|+..=.
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L----t~~~-~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL----TKQI-LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc----CHHh-hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence            56679999999999998777765555554444332    1223 367999999999999999999999999988885211


Q ss_pred             hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647          298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA  377 (530)
Q Consensus       298 ~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~  377 (530)
                      .+   .+....+..+.. ++......+++...-|||.|........+.-+         ..-.+.+-+.++-..-|+.+.
T Consensus       402 ~~---~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~R~~v---------L~~aftralkdpf~paR~a~v  468 (690)
T KOG1243|consen  402 KR---NLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASVRKRV---------LASAFTRALKDPFVPARKAGV  468 (690)
T ss_pred             hh---hhcHHHHHHHHh-hCccccCcccccceeeecccccccchhhhccc---------cchhhhhhhcCCCCCchhhhh
Confidence            11   222333444443 32345677899999999999877544332211         333455556666566788888


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647          378 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  425 (530)
Q Consensus       378 ~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl  425 (530)
                      |++.......   .+.=+...++|.++-+.-+.+..++..|-.++.-.
T Consensus       469 ~~l~at~~~~---~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  469 LALAATQEYF---DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             HHHhhccccc---chhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence            8876543321   22223445788888877777777777776666544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.32  E-value=1.5  Score=46.77  Aligned_cols=141  Identities=15%  Similarity=0.148  Sum_probs=104.9

Q ss_pred             HHHHHHHhcc----CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647          267 LDAILRHLKR----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       267 l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      -|.......+    .|++++..|.-+|..+-+-+.+.+.     .-+|.++..+.++++|.++.+|.-.+|-++-.-...
T Consensus       894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~  968 (1128)
T COG5098         894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT  968 (1128)
T ss_pred             hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence            3444444443    6889999998888887765544432     347888888878999999999999999876543332


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                      .+           ..-..|.+-|.+.+..||+.+..++.++.-.+.     +--.|-++.+..+|.+++..+...|-..+
T Consensus       969 ~d-----------e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~ff 1032 (1128)
T COG5098         969 AD-----------EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFF 1032 (1128)
T ss_pred             hH-----------HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHH
Confidence            22           244567778888899999999999999865442     22246788899999999999999998888


Q ss_pred             HHhcCC
Q 009647          423 GNLCVS  428 (530)
Q Consensus       423 ~nl~~~  428 (530)
                      ..++..
T Consensus      1033 t~~a~K 1038 (1128)
T COG5098        1033 TQIAKK 1038 (1128)
T ss_pred             HHHHhc
Confidence            888764

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=90.26  E-value=4.1  Score=36.10  Aligned_cols=146  Identities=15%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHH
Q 009647          137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV  216 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~  216 (530)
                      .+++.|+++|+.+.+..+++||..+|+.|-.-++-.-+.+.+..+.-..  .. .+...........+ +...+++    
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~--~~-~~~~~~~~~l~~~~-~~~~~ee----   81 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSS--EN-SNDESTDISLPMMG-ISPSSEE----   81 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcccc--cc-ccccchhhHHhhcc-CCCchHH----
Confidence            4678889999887778888999999999987776444433322220000  01 11222222222222 2111222    


Q ss_pred             HHhcCChhhhHhhcCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009647          217 LLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS  293 (530)
Q Consensus       217 ~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~  293 (530)
                      ..-..++..|++.|+++. ..-...++-++.++......+ +...  ...++|.+++.++..++..++...+-|+.|.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~--L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPY--LPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhH--HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            333345778888888653 222334455555555332222 2333  3588999999999777788877777776664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.69  E-value=51  Score=39.16  Aligned_cols=108  Identities=16%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHH-HHHHHHHHhcCChhhHHh
Q 009647           97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAGKQEETKA  175 (530)
Q Consensus        97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~e-A~~~L~nia~~~~~~~~~  175 (530)
                      ..++..+..+-...+..|+++|..+....+..-...-++.|+..+++.     + ...++| |...++...-..++....
T Consensus       819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D-----s-sasVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND-----S-SASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc-----c-hhHHHHHHHHHHhhhhhccHHHHHH
Confidence            334456678889999999999999876543222233344444444332     2 334566 566666555444443333


Q ss_pred             hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      ..+   -+..-..+ +...||..++.++..||...|.+-
T Consensus       893 yY~---~i~erIlD-tgvsVRKRvIKIlrdic~e~pdf~  927 (1692)
T KOG1020|consen  893 YYD---QIIERILD-TGVSVRKRVIKILRDICEETPDFS  927 (1692)
T ss_pred             HHH---HHHhhcCC-CchhHHHHHHHHHHHHHHhCCChh
Confidence            222   22222333 568899999999999998776543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.32  E-value=0.87  Score=50.04  Aligned_cols=171  Identities=15%  Similarity=0.065  Sum_probs=92.7

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcC---CCCHHHHHHHHHHHHhhcCCCch--
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEE--  212 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~---~~~~~v~~~a~~~L~nla~d~~~--  212 (530)
                      .+..+.+++....-.  ..+|++.|..+.......+..++   ..+..++..   ..++.++..|+-+++.+......  
T Consensus       396 av~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l---~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~  470 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELL---KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS  470 (618)
T ss_dssp             HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHH---HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence            344555666653322  24577777776654433334433   333344432   24567888888888877642111  


Q ss_pred             -------hHHHHHhcCChhhhHhhcC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC---C
Q 009647          213 -------FRNVLLSQGALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA---D  278 (530)
Q Consensus       213 -------~r~~~~~~g~i~~L~~lL~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~---d  278 (530)
                             .....+...+++.|...+.    ..+..-+..++.+|+|+-.             ...++.+...+...   +
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------~~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------PESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------GGGHHHHHTTSTTSS-S-
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------chhhHHHHhHhhhccccc
Confidence                   1112223345666666655    3456778888999999952             24567777777655   5


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhh
Q 009647          279 EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGN  334 (530)
Q Consensus       279 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~n  334 (530)
                      ..++..|+|+|..++...++.+        .+.+..++.+ ..+.+++..|+..|-.
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            6899999999998876544333        2334444432 3466777777655543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=89.23  E-value=4.2  Score=37.16  Aligned_cols=103  Identities=20%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             chhhhHHHHhhhhcCCccccchhcccCCC----------cchhhHHHHHHHhcc------CcHhHHHHHHHHHHHHhcCC
Q 009647          324 LLIPVLRSLGNLVAGDSSTISDVLVPGHG----------ITDQVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~----------~~~~~l~~L~~lL~~------~~~~i~~~A~~~Lsnl~~~~  387 (530)
                      ....++..|+|++..+.. ...+++.+..          .....+..|+.++..      ....--...+.+++|++.. 
T Consensus        11 ~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~-   88 (192)
T PF04063_consen   11 LADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL-   88 (192)
T ss_pred             hHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-
Confidence            344566667777654322 2222222111          123577888887755      2234456788999999774 


Q ss_pred             HHHHHHHHhC--Cc--HHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          388 VEHKQLIHSS--EA--LALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       388 ~~~~~~li~~--~~--l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      ++.++.+++.  +.  +..|+..+++.+..-|.-++.+|.|+|..
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd  133 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD  133 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence            5777777754  33  66777777888766677899999999975

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.91  E-value=7.1  Score=43.27  Aligned_cols=195  Identities=20%  Similarity=0.234  Sum_probs=120.4

Q ss_pred             HHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH--HHHHHHhccCC
Q 009647          202 ALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL--DAILRHLKRAD  278 (530)
Q Consensus       202 ~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l--~~L~~lL~~~d  278 (530)
                      +|.++..+.++....+++.|++..+..+++. ...++...+...+.|++..........   ....+  ..+-.++..-+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~---~~~~~~~~~f~~~~~~w~  570 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLM---IFEFIDFSVFKVLLNKWD  570 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHhhcc
Confidence            6678888889999999999999999999985 467899999999999986532222111   11122  23333444444


Q ss_pred             H-HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647          279 E-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV  357 (530)
Q Consensus       279 ~-~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~  357 (530)
                      . +.-..++..|+.+...+++........-+-..+++..                .....   .....+.+       ..
T Consensus       571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i----------------~~~~~---~~~~~~~~-------~~  624 (699)
T KOG3665|consen  571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAI----------------SRWLT---SEIRVIND-------RS  624 (699)
T ss_pred             hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHh----------------hccCc---cceeehhh-------hh
Confidence            3 7778888888888764443221111111222222222                11111   11111111       12


Q ss_pred             HHH-HHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-CChhHHHHHHHHHHHh
Q 009647          358 IAV-LVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNL  425 (530)
Q Consensus       358 l~~-L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-~~~~v~~eA~~aL~nl  425 (530)
                      +.+ +..++. +..+..+..|.|++.|++...++..+.+.+.|+++.+.++-.. ...+++.++...+.+.
T Consensus       625 f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  625 FFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             cchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            222 444554 3456788999999999999888888888899999988877532 2456777776666544

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=88.77  E-value=2.3  Score=33.75  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647          224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL  303 (530)
Q Consensus       224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i  303 (530)
                      ...+..+.++.+.++..++..|+.|...++    ........++..+...|.++|+-|-.+|..+|..|++..++     
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----
Confidence            445666788889999999999999998764    11223467888889999999999999999999999975442     


Q ss_pred             HhcCchHHHHHHH
Q 009647          304 VKSGVLQLLVERL  316 (530)
Q Consensus       304 ~~~g~l~~Lv~lL  316 (530)
                         .+++.|++..
T Consensus        77 ---~vl~~L~~~y   86 (92)
T PF10363_consen   77 ---EVLPILLDEY   86 (92)
T ss_pred             ---HHHHHHHHHH
Confidence               2456666554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.64  E-value=5.4  Score=43.98  Aligned_cols=61  Identities=18%  Similarity=0.178  Sum_probs=44.6

Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHhCCcHHHHHHHhcCCC--
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHK-----------------------------------QLIHSSEALALLLHLLSTSP--  411 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~-----------------------------------~~li~~~~l~~Li~lL~~~~--  411 (530)
                      +++|++.|+.+|-|+..+.++..                                   ..+-..++|..|+++|+...  
T Consensus       675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~  754 (1516)
T KOG1832|consen  675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP  754 (1516)
T ss_pred             CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence            67899999999988876542110                                   12334578999999997643  


Q ss_pred             ---hhHHHHHHHHHHHhcCCC
Q 009647          412 ---FDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       412 ---~~v~~eA~~aL~nl~~~~  429 (530)
                         ..+|+-||.+|.-++..+
T Consensus       755 t~aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  755 TTADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             CcHHHHHHHHHHHHhccccCc
Confidence               258999999999999864

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=88.33  E-value=10  Score=39.28  Aligned_cols=258  Identities=11%  Similarity=0.064  Sum_probs=139.1

Q ss_pred             HHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHH
Q 009647          116 RELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSP  194 (530)
Q Consensus       116 ~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~  194 (530)
                      ..|.+++......+....++...+..|+.++.++|+.+ +-..-.+|+++-+.....+..+. .....|.+++.......
T Consensus       112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rE-R~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~  190 (409)
T PF01603_consen  112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRE-RDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHN  190 (409)
T ss_dssp             HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHH-HHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--S
T ss_pred             HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccccc
Confidence            34445544433222333556677888999999887543 33467788887765555666665 35566777776545555


Q ss_pred             HHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 009647          195 VAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR  272 (530)
Q Consensus       195 v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~  272 (530)
                      -...++..+|.+..+.. ..+..... =....|+.|.+.+. .........|+..++..+ |..      ...++..|++
T Consensus       191 gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l------~~~~i~~llk  262 (409)
T PF01603_consen  191 GIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSL------AEPVIKGLLK  262 (409)
T ss_dssp             THHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGG------HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chh------HHHHHHHHHH
Confidence            66788889998886532 22221111 11234555656553 344677777777777432 321      1233344444


Q ss_pred             HhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCC
Q 009647          273 HLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH  351 (530)
Q Consensus       273 lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~  351 (530)
                      .=-..++.=..-.+.-+..+... +++....+ ...++..+...+ .+.+..|...|+....|=     .....+.+.  
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci-~S~h~qVAErAl~~w~n~-----~~~~li~~~--  333 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCI-SSPHFQVAERALYFWNNE-----YFLSLISQN--  333 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHH-TSSSHHHHHHHHGGGGSH-----HHHHHHHCT--
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHCCH-----HHHHHHHhC--
Confidence            33334443333344444444442 22222222 233556666666 577878878887776652     111112111  


Q ss_pred             CcchhhHHHHHHHhc-----cCcHhHHHHHHHHHHHHhcCCHHHHHH
Q 009647          352 GITDQVIAVLVKCLK-----SEHRVLKKEAAWVLSNIAAGSVEHKQL  393 (530)
Q Consensus       352 ~~~~~~l~~L~~lL~-----~~~~~i~~~A~~~Lsnl~~~~~~~~~~  393 (530)
                        ...++|.+..-|.     |-+..|+..|+.++.-+..-++.....
T Consensus       334 --~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  334 --SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             --HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence              2346777777663     336789999999999888777654443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.32  E-value=3.1  Score=45.26  Aligned_cols=133  Identities=11%  Similarity=0.079  Sum_probs=75.4

Q ss_pred             CcHHHHHhhcC---CCCHHHHHHHHHHHHhhcC----CCchhHHHHHhcCChhhhHhhcCC----CChhHHHHHHHHHHH
Q 009647          179 ALPLLIAHLGE---KSSSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALSN  247 (530)
Q Consensus       179 ~v~~L~~lL~~---~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~n  247 (530)
                      .+..+..++.+   .+++.++..|+-+++++..    +.+.+-. .+....++.+...|..    .+..-+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            34555566554   2356788888888877653    2221111 1223356666665542    355556777888888


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhc---cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh-cCCCcc
Q 009647          248 LIKGPDPKPATELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQ  323 (530)
Q Consensus       248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~  323 (530)
                      +...             ..++.+...+.   ..+..++..|+|+|..++...+...+        +.+..++. ...+++
T Consensus       473 ~g~~-------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~E  531 (574)
T smart00638      473 AGHP-------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPE  531 (574)
T ss_pred             cCCh-------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChH
Confidence            8521             22334444443   22457999999999999864443332        33444443 244667


Q ss_pred             chhhhHHHHh
Q 009647          324 LLIPVLRSLG  333 (530)
Q Consensus       324 v~~~al~~L~  333 (530)
                      ++..|+..|-
T Consensus       532 vRiaA~~~lm  541 (574)
T smart00638      532 VRMAAVLVLM  541 (574)
T ss_pred             HHHHHHHHHH
Confidence            7777665554

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.10  E-value=2.3  Score=41.18  Aligned_cols=143  Identities=16%  Similarity=0.203  Sum_probs=98.3

Q ss_pred             chHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccc
Q 009647          265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS  344 (530)
Q Consensus       265 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~  344 (530)
                      -++...+..|.++|-+...+.+..+..|+.-+.+.....+. .++..+++-+ +.....|-..|+.+++-|.+.-+..++
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667788888888999999999888765554444432 3455566656 355667778999999999876554443


Q ss_pred             hhcccCCCcchhhHHHHHHHh----ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHH
Q 009647          345 DVLVPGHGITDQVIAVLVKCL----KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY  420 (530)
Q Consensus       345 ~~i~~g~~~~~~~l~~L~~lL----~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~  420 (530)
                      ..           +..++..|    ...+..|+..|-.+|..++.+-..+       .+++.|+..+++..+.++..++.
T Consensus       166 ~~-----------ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~  227 (334)
T KOG2933|consen  166 QE-----------LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAAL  227 (334)
T ss_pred             HH-----------HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhc
Confidence            32           33333333    2335689999999999887653222       25778888899999999988888


Q ss_pred             HHHHhcC
Q 009647          421 VLGNLCV  427 (530)
Q Consensus       421 aL~nl~~  427 (530)
                      +..+...
T Consensus       228 ~~~~~v~  234 (334)
T KOG2933|consen  228 CFSRCVI  234 (334)
T ss_pred             cccccce
Confidence            7777654

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=87.86  E-value=79  Score=39.09  Aligned_cols=207  Identities=10%  Similarity=0.046  Sum_probs=111.5

Q ss_pred             CCHHHHHHHHHHHHhhcCCC---chhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 009647          191 SSSPVAEQCAWALGNVAGEG---EEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL  266 (530)
Q Consensus       191 ~~~~v~~~a~~~L~nla~d~---~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~  266 (530)
                      ++..+...|+-.|..+|...   ++.-..-++...+.|+..++. +.+.++++.++.|+.++.....     +.+  ..+
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-----~nI--kSG 1221 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-----NNV--KSG 1221 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-----hhh--hcC
Confidence            45677777777777776422   233333445567888888777 4578999999999999876431     122  235


Q ss_pred             HHHHHHHhc----cCCHHHHHHHHHHHHHhhcCCchhHHHHHh--cCc----hHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          267 LDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVK--SGV----LQLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       267 l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~--~g~----l~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                      -+.+..++.    ...+.+...+..++..+...   ....+..  .+.    +..|.++-....+.++-..|+..|.+++
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence            555555554    44567777777777766642   1121111  223    3333333322224555556666666542


Q ss_pred             c----CCc-----------------------cccchhcccCC--CcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-
Q 009647          337 A----GDS-----------------------STISDVLVPGH--GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-  386 (530)
Q Consensus       337 ~----~~~-----------------------~~~~~~i~~g~--~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-  386 (530)
                      .    +.-                       .....+.+...  ..+--++..|..+..+.++.||..|+.+|-.+... 
T Consensus      1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076       1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred             HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence            1    000                       00000000000  01222333444456677889999999999887642 


Q ss_pred             ----CHHHHHHHHhCCcHHHHHHHhc
Q 009647          387 ----SVEHKQLIHSSEALALLLHLLS  408 (530)
Q Consensus       387 ----~~~~~~~li~~~~l~~Li~lL~  408 (530)
                          +++.-..++. +++.++++.++
T Consensus      1379 G~~Fs~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076       1379 GHLFSLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred             hccCCHHHHHHHHH-HHHHHHHHHHH
Confidence                2233333444 46777766654

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.89  E-value=33  Score=37.93  Aligned_cols=293  Identities=10%  Similarity=0.110  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCC--CHHHHHHHHHHHHhhcCCCchhHHHHHhcC----Chhh-
Q 009647          154 QLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKS--SSPVAEQCAWALGNVAGEGEEFRNVLLSQG----ALPP-  225 (530)
Q Consensus       154 ~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~--~~~v~~~a~~~L~nla~d~~~~r~~~~~~g----~i~~-  225 (530)
                      -++-|+-.+..++.....+...++ .-+..++.-.+..+  +..-++.|++....++......+.-+....    .+.. 
T Consensus       378 RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff  457 (960)
T KOG1992|consen  378 RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFF  457 (960)
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHH
Confidence            345577777777766544444555 34555554333322  445567788888887765433332222111    1111 


Q ss_pred             ---hHhhcCCC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647          226 ---LARMMLPN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA  299 (530)
Q Consensus       226 ---L~~lL~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~  299 (530)
                         ++.-|.++   ...+.+...-=.....|..   ...+.  ....+|.+++.|..+..-+...|+.++-.+-.-.+..
T Consensus       458 ~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q---l~~~~--lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~  532 (960)
T KOG1992|consen  458 ANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ---LGKEH--LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS  532 (960)
T ss_pred             HHHhhHHhccCccccccchhhcccceeeeeccc---CChHH--HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence               11112221   1222332222222222322   11223  2478999999999999999999999987776533322


Q ss_pred             HHHHHhcCchH-----HHHHHHh--cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc----cC
Q 009647          300 TSLLVKSGVLQ-----LLVERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----SE  368 (530)
Q Consensus       300 ~~~i~~~g~l~-----~Lv~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~----~~  368 (530)
                      ...+...+-+.     .+..+..  +.+...--....+++-.+..-.++.+....       ...++.|.+++.    ++
T Consensus       533 ~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~-------~~~l~~Lteiv~~v~KNP  605 (960)
T KOG1992|consen  533 NAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHA-------PELLRQLTEIVEEVSKNP  605 (960)
T ss_pred             cccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhh-------hHHHHHHHHHHHHHhcCC
Confidence            22232222222     1222221  111111112334444444433333332222       134555555552    22


Q ss_pred             -cH---hHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH
Q 009647          369 -HR---VLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL  443 (530)
Q Consensus       369 -~~---~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~  443 (530)
                       +|   ..--++..++-+.+.. ++..+..+ +..++|.+..+|..+-.+.--.+...++-+...+..  .-|.++..-.
T Consensus       606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~--~ip~~~~~l~  682 (960)
T KOG1992|consen  606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG--TIPDSYSPLF  682 (960)
T ss_pred             CCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchhHHHHH
Confidence             22   3445566666555544 33333333 445788887888765555555555666666544321  2233322222


Q ss_pred             HHHH------hcCChHHHHhhhcc
Q 009647          444 VSLV------GRGCLSGFIDLVRS  461 (530)
Q Consensus       444 ~~l~------~~g~i~~L~~lL~~  461 (530)
                      ..+.      ..|-+|+++.+|..
T Consensus       683 ~~lLsp~lW~r~gNipalvrLl~a  706 (960)
T KOG1992|consen  683 PPLLSPNLWKRSGNIPALVRLLQA  706 (960)
T ss_pred             HHhcCHHHHhhcCCcHHHHHHHHH
Confidence            3332      25889999988874

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=86.36  E-value=2.2  Score=33.88  Aligned_cols=82  Identities=16%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  261 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v  261 (530)
                      ..+..|.+ +.+.+|-+++..|.++.....  ....-..+++..+...|+++++-+.-+|+.+|+.|+... |       
T Consensus         7 ~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p-------   75 (92)
T PF10363_consen    7 EALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-P-------   75 (92)
T ss_pred             HHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-h-------
Confidence            44566666 677899999999999997554  222333467778888999999999999999999999643 1       


Q ss_pred             HhhchHHHHHHHhcc
Q 009647          262 KVDGLLDAILRHLKR  276 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~  276 (530)
                        ..++|.|+....+
T Consensus        76 --~~vl~~L~~~y~~   88 (92)
T PF10363_consen   76 --DEVLPILLDEYAD   88 (92)
T ss_pred             --HHHHHHHHHHHhC
Confidence              2456666665443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=85.96  E-value=11  Score=34.07  Aligned_cols=82  Identities=20%  Similarity=0.224  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHhCCcHHHHHHHhcC---------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCChHHH
Q 009647          386 GSVEHKQLIHSSEALALLLHLLST---------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGF  455 (530)
Q Consensus       386 ~~~~~~~~li~~~~l~~Li~lL~~---------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L  455 (530)
                      .+..-++.+++.|++..|+++|..         .+.+...+++.+|..++...           .-+..++ ..+++..+
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-----------~G~~~v~~~~~~v~~i  163 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-----------YGLEAVLSHPDSVNLI  163 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-----------HHHHHHHCSSSHHHHH
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-----------HHHHHHHcCcHHHHHH
Confidence            344667788888888888888732         34578889999999887642           1134444 67999999


Q ss_pred             HhhhccCCHHHHHHHHHHHHHHH
Q 009647          456 IDLVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       456 ~~lL~~~d~~i~~~~L~~L~~il  478 (530)
                      +..|.+++..+...+++.|..++
T Consensus       164 ~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  164 ALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=60  Score=35.69  Aligned_cols=114  Identities=13%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             hchHHHHHHHhcc-----CC---HHHHHHHHHHHHHhhc--CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          264 DGLLDAILRHLKR-----AD---EELTTEVAWVVVYLSA--LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       264 ~~~l~~L~~lL~~-----~d---~~v~~~a~~~L~~L~~--~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                      .|+++.++..+..     ++   +--.+.|++.++++..  ..+.-..-+.+.=+++.++..+ +++.--++..||..++
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            5999999999841     12   2334556666666654  2222233334444556666666 4666667789999999


Q ss_pred             hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC
Q 009647          334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~  387 (530)
                      .+..   +..+..+      ...+......++.+++-.|+.+|+-++..+..+.
T Consensus       486 ~~ee---Dfkd~~i------ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~  530 (970)
T COG5656         486 TIEE---DFKDNGI------LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE  530 (970)
T ss_pred             HHHH---hcccchH------HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence            8832   2222222      1357777788888888899999999999998765

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=85.26  E-value=9.7  Score=42.67  Aligned_cols=193  Identities=12%  Similarity=0.096  Sum_probs=120.9

Q ss_pred             hHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccch
Q 009647          266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD  345 (530)
Q Consensus       266 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~  345 (530)
                      +-+.+..-+.+++-.-+..++..+.-...... ..-.....|.+-.++.......+..+...|+.+|.-|+..-......
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            33444455556666677777777766665322 11111123444445554444557777888999999998765444333


Q ss_pred             hcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHh
Q 009647          346 VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL  425 (530)
Q Consensus       346 ~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl  425 (530)
                      +.       .+++|.|+.-+......++..+..++-.+...+.       -..+.+.+...+.++++.++.+....+...
T Consensus       333 ~~-------~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~  398 (815)
T KOG1820|consen  333 YA-------KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRK  398 (815)
T ss_pred             HH-------HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            32       3578888888887777777666555555444221       112577888899999999998866666555


Q ss_pred             cCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          426 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      ......  .+       ...---.++++.++....+.+.++...+++++..+++...
T Consensus       399 ~~~~~~--~~-------~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  399 LRKLGP--KT-------VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             HhhcCC--cC-------cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence            543210  11       0111124577888888888999999999999988876543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.22  E-value=18  Score=39.12  Aligned_cols=192  Identities=10%  Similarity=0.039  Sum_probs=110.9

Q ss_pred             HHHHHHhcCCCccchhhhHHHHhhhhcCCcccc-----chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          311 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI-----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       311 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~-----~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      .|.+-| +..+..|+.+|+..+-++..-.+..+     +.+++       .-...|..+|.++-+.||..|..-++.++.
T Consensus       178 ~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-------kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s  249 (1005)
T KOG1949|consen  178 ILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-------KQFEELYSLLEDPYPMVRSTAILGVCKITS  249 (1005)
T ss_pred             HHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-------HHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            344445 46788999999999888875433322     33332       456678899999999999999888877754


Q ss_pred             CCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCH
Q 009647          386 GSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI  464 (530)
Q Consensus       386 ~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~  464 (530)
                      ..=+.+-.-+-..++..+++-+ .+...+||......|..+..++.            ...+.+ -++|++-..|..+..
T Consensus       250 ~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------------sh~~le-~~Lpal~~~l~D~se  316 (1005)
T KOG1949|consen  250 KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------------SHPLLE-QLLPALRYSLHDNSE  316 (1005)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------------chhHHH-HHHHhcchhhhccch
Confidence            2211111100011333444433 33445788877777877776531            111111 134566666767777


Q ss_pred             HHHHHHHHHHHHHHccCCCCcchhHHHHhchHH-HHHHHhcCCcHHHHHHHHHHHHhhcCCCCCC
Q 009647          465 EAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGLVDKYFGEDYGL  528 (530)
Q Consensus       465 ~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~-~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~  528 (530)
                      .+.....+.|..|=    +..+.+ +...=-.+ .|..|-...-+--+..+.-|+..||+..-++
T Consensus       317 ~VRvA~vd~ll~ik----~vra~~-f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e  376 (1005)
T KOG1949|consen  317 KVRVAFVDMLLKIK----AVRAAK-FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE  376 (1005)
T ss_pred             hHHHHHHHHHHHHH----hhhhhh-hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence            77777767666552    111111 12222223 3444555555556677888999999887644

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.14  E-value=2.7  Score=40.78  Aligned_cols=139  Identities=12%  Similarity=0.137  Sum_probs=89.5

Q ss_pred             hHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 009647          226 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK  305 (530)
Q Consensus       226 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~  305 (530)
                      .+..|.+.+......++-.+..|+..+ ++.....  ...++..+++-+.+....|-..||.++..+...-+..+...  
T Consensus        93 ~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~--L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~--  167 (334)
T KOG2933|consen   93 ALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPM--LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE--  167 (334)
T ss_pred             HHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHH--HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            344455555566666666666666553 2221112  23566667777777778899999999999887544444442  


Q ss_pred             cCchHHHHHHHh-cC--CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647          306 SGVLQLLVERLA-TS--NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  382 (530)
Q Consensus       306 ~g~l~~Lv~lL~-~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn  382 (530)
                         +..++..|. +.  ++.-++..|.++|-.++.....+             .+++.|...+.+.++.++..++.+.++
T Consensus       168 ---ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------------~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  168 ---LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------------KLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             ---HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence               233333332 21  23346788999999888654322             478888889999999999999988877


Q ss_pred             Hhc
Q 009647          383 IAA  385 (530)
Q Consensus       383 l~~  385 (530)
                      ..-
T Consensus       232 ~v~  234 (334)
T KOG2933|consen  232 CVI  234 (334)
T ss_pred             cce
Confidence            643

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=84.89  E-value=32  Score=37.44  Aligned_cols=183  Identities=16%  Similarity=0.141  Sum_probs=108.4

Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh---hcCC
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL---VAGD  339 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl---~~~~  339 (530)
                      ...++|.|+..+.+.  ..+-..+-.+.+++.+.+.   .-....+++.|...+......++   .+..+-|+   ....
T Consensus       310 ~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~~~~~~~~~---~l~i~e~mdlL~~Kt  381 (700)
T KOG2137|consen  310 FQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIYSASDPKQA---LLFILENMDLLKEKT  381 (700)
T ss_pred             HHhhhhHHHHHhccc--cccccccchhhhhhhccch---hhhhhhhhHHHHHHhccCCcccc---hhhHHhhHHHHHhhC
Confidence            467888888777432  3333333444445443221   12234567777777642222222   22223332   1111


Q ss_pred             ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHH
Q 009647          340 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEV  418 (530)
Q Consensus       340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA  418 (530)
                      +  ...+       ...++|.|..-+++.+..++..++..+...+..-+   -..+..-++|.|-++. .+.+..++..+
T Consensus       382 ~--~e~~-------~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~  449 (700)
T KOG2137|consen  382 P--PEEV-------KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNV  449 (700)
T ss_pred             C--hHHH-------HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHH
Confidence            1  1112       24689999999999999999999999988865432   2234445788888874 56778899999


Q ss_pred             HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHc
Q 009647          419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR  479 (530)
Q Consensus       419 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~  479 (530)
                      +-++.-+...              +....-...+.++....+..|+.++...+.+.+++..
T Consensus       450 L~c~~~l~q~--------------lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~  496 (700)
T KOG2137|consen  450 LPCLAGLIQR--------------LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL  496 (700)
T ss_pred             HHHHHHHHHH--------------HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            9888877532              1111112234455555667899999888888877654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.54  E-value=18  Score=32.92  Aligned_cols=74  Identities=8%  Similarity=0.033  Sum_probs=58.2

Q ss_pred             ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH
Q 009647          222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS  301 (530)
Q Consensus       222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~  301 (530)
                      .++.++++..+++..++..|+..+..+.+..--.       -...+|.++.|..++++.++..|...+..+.+..+..+.
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-------P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVN-------PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-------hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence            4667777777889999999999998887642111       136789999999999999999999999999875554444


Q ss_pred             H
Q 009647          302 L  302 (530)
Q Consensus       302 ~  302 (530)
                      .
T Consensus        82 ~   82 (187)
T PF12830_consen   82 S   82 (187)
T ss_pred             H
Confidence            3

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.22  E-value=2  Score=40.19  Aligned_cols=79  Identities=18%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHhhc--C-------CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCCh
Q 009647          154 QLLEAAWCLTNIAAGKQEETKALL--P-------ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGAL  223 (530)
Q Consensus       154 ~~~eA~~~L~nia~~~~~~~~~i~--~-------~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i  223 (530)
                      -|+-|..+|..++-.+. +.+.++  +       .+..|+++|....++-.||-|+-.|.|+|..+. -+|....+.+.|
T Consensus       140 PqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  140 PQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             HHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            46789999999996543 344444  1       567788888887889999999999999997555 455677788999


Q ss_pred             hhhHhhcCCC
Q 009647          224 PPLARMMLPN  233 (530)
Q Consensus       224 ~~L~~lL~~~  233 (530)
                      ..|+.++...
T Consensus       219 ~~Li~FiE~a  228 (257)
T PF12031_consen  219 SHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=84.09  E-value=16  Score=38.39  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=107.2

Q ss_pred             hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCCh----hHHHHHHHHHHHhcCCCCC
Q 009647          356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF----DIKKEVAYVLGNLCVSPTE  431 (530)
Q Consensus       356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~----~v~~eA~~aL~nl~~~~~~  431 (530)
                      .....+..++.+++..-+.+|...+..+.+ ....+..++...++..|..++.+++.    ++..-.+.+++.+..++..
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            355677888888888888889999988866 45788899999999999999987654    4555566666665433210


Q ss_pred             CCCCchhHHHHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHH
Q 009647          432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENED  509 (530)
Q Consensus       432 ~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~  509 (530)
                      +           ...+...++.....+...  -+..+...+|..|+++.....  .....+.+.--++.|.......|..
T Consensus       162 s-----------W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~--~~~~~v~eev~i~~li~hlq~~n~~  228 (713)
T KOG2999|consen  162 S-----------WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD--TLRQLVAEEVPIETLIRHLQVSNQR  228 (713)
T ss_pred             e-----------eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh--HHHHHHHhcCcHHHHHHHHHhcchH
Confidence            0           011122233333333322  345667788888888764432  2356666777777777667778899


Q ss_pred             HHHHHHHHHHhhcCCCCC
Q 009647          510 LRNMANGLVDKYFGEDYG  527 (530)
Q Consensus       510 i~~~A~~il~~~f~~~~~  527 (530)
                      ++..|..++..+|-.-++
T Consensus       229 i~~~aial~nal~~~a~~  246 (713)
T KOG2999|consen  229 IQTCAIALLNALFRKAPD  246 (713)
T ss_pred             HHHHHHHHHHHHHhhCCh
Confidence            999999999999876544

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=83.65  E-value=47  Score=33.82  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=83.1

Q ss_pred             HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc------cCcHhHHHHH
Q 009647          303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK------SEHRVLKKEA  376 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~------~~~~~i~~~A  376 (530)
                      +.+..-.+.+-+-+..++...-+..|+..|..++..-..+...+          +...+..+|.      +.++.-+..|
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----------~~~~i~~~l~~y~~~~~~~w~~KD~A  275 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----------LMQYIQQLLQQYASNPSNNWRSKDGA  275 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-TTT-HHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHhhCCcccHHHHHHH
Confidence            34445555555555333344556788888888875543332222          2223333343      3455777888


Q ss_pred             HHHHHHHhcCCHH------------HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647          377 AWVLSNIAAGSVE------------HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV  444 (530)
Q Consensus       377 ~~~Lsnl~~~~~~------------~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~  444 (530)
                      +..++.|+.....            .+..+....++|.|. --.+..+-++..|++.+..+-..-      |   .++. 
T Consensus       276 l~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l------~---~~~l-  344 (370)
T PF08506_consen  276 LYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL------P---KEQL-  344 (370)
T ss_dssp             HHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----------HHHH-
T ss_pred             HHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC------C---HHHH-
Confidence            9999999865421            334455555677665 222455778999999999886531      1   1222 


Q ss_pred             HHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647          445 SLVGRGCLSGFIDLVRSADIEAARLGLQF  473 (530)
Q Consensus       445 ~l~~~g~i~~L~~lL~~~d~~i~~~~L~~  473 (530)
                          .++++.+++.|.+++.-+...|..+
T Consensus       345 ----~~~~~~l~~~L~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  345 ----LQIFPLLVNHLQSSSYVVHTYAAIA  369 (370)
T ss_dssp             ----HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCcchhhhhhhh
Confidence                2478999999998887776665544

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.55  E-value=1e+02  Score=36.66  Aligned_cols=148  Identities=11%  Similarity=0.121  Sum_probs=95.1

Q ss_pred             cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          306 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       306 ~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      .|++|.|..-|. +.+..++..|...+|.+......+..   +.    .......++.-+...+..||.++.....++..
T Consensus       258 ~~vip~l~~eL~-se~~~~Rl~a~~lvg~~~~~~~~~l~---~~----~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~  329 (1266)
T KOG1525|consen  258 LAVIPQLEFELL-SEQEEVRLKAVKLVGRMFSDKDSQLS---ET----YDDLWSAFLGRFNDISVEVRMECVESIKQCLL  329 (1266)
T ss_pred             HHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhcchhhhc---cc----chHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence            478899988884 78889999999999999977665443   11    23466677777778889999999999999877


Q ss_pred             CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647          386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE  465 (530)
Q Consensus       386 ~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~  465 (530)
                      .++........   .-.+-  ..+.|++++.....++ +.|..           ....-.++.. .+..+-+.+..+-..
T Consensus       330 ~~~~~~~~~~~---~~~l~--~~~~D~~~rir~~v~i-~~~~v-----------~~~~l~~~~~-ll~~~~eR~rDKk~~  391 (1266)
T KOG1525|consen  330 NNPSIAKASTI---LLALR--ERDLDEDVRVRTQVVI-VACDV-----------MKFKLVYIPL-LLKLVAERLRDKKIK  391 (1266)
T ss_pred             cCchhhhHHHH---HHHHH--hhcCChhhhheeeEEE-EEeeh-----------hHhhhhhhHH-HHHHHHHHHhhhhHH
Confidence            76654443221   11222  2334444443332222 22211           0111222333 666667777778889


Q ss_pred             HHHHHHHHHHHHHc
Q 009647          466 AARLGLQFMELVLR  479 (530)
Q Consensus       466 i~~~~L~~L~~il~  479 (530)
                      +...|+..|..+.+
T Consensus       392 VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  392 VRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998888776

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=83.32  E-value=11  Score=33.51  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             hhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC--CcHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCC
Q 009647          356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEG  432 (530)
Q Consensus       356 ~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~--~~l~~Li~lL~~~~-~~v~~eA~~aL~nl~~~~~~~  432 (530)
                      .....+..+|+++++.-|-.++..+.-++..++  -..+.++  ..+..|+.+|+.++ +.+.+.|+.+|..+....   
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~---   99 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI---   99 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence            577788999999888888888877777765442  1223333  24778888887654 567888999999987642   


Q ss_pred             CCCchhHHHHHHHHHh---cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647          433 EGKPKLIQEHLVSLVG---RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       433 ~~~~~~~~~~~~~l~~---~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~  483 (530)
                      .+.|    +-.+.+..   .++++.++.+++.  ......++++|..++...+.
T Consensus       100 ~~~p----~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  100 RGKP----TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             cCCC----chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            2343    22333332   2456666776654  56677889999999876543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.17  E-value=1.2  Score=41.53  Aligned_cols=85  Identities=15%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHhcCc-------hHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647          280 ELTTEVAWVVVYLSALSNVATSLLVKSGV-------LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG  352 (530)
Q Consensus       280 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~-------l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~  352 (530)
                      .-+.-++.+|+.|+- .+.+.+.++.++-       +..|+++|....+...++-|+-.|.|++.++......+..    
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~----  213 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM----  213 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH----
Confidence            357788999999986 4455666665553       4456666655567778899999999999988766544432    


Q ss_pred             cchhhHHHHHHHhccCcH
Q 009647          353 ITDQVIAVLVKCLKSEHR  370 (530)
Q Consensus       353 ~~~~~l~~L~~lL~~~~~  370 (530)
                       +.+.+..|+.++.....
T Consensus       214 -q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  214 -QKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             -hhchHHHHHHHHHHHHH
Confidence             46789999999876544

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=83.12  E-value=2.9  Score=35.00  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcch-hHHHHhchHHHHHHHhcC--------CcHHHHHHHHHHHHhh
Q 009647          451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT-KLVEREDGIDAMERFQFH--------ENEDLRNMANGLVDKY  521 (530)
Q Consensus       451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~-~~i~~~ggl~~L~~L~~~--------~~~~i~~~A~~il~~~  521 (530)
                      ++..|.+=|+.+++.+..++|.+|..++..+.. .+. .+-..+..+..+.+....        .++.|+..|.++++-.
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i  117 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI  117 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence            456677778888888889999999999987753 222 233344455555555542        2568999999999999


Q ss_pred             cCCC
Q 009647          522 FGED  525 (530)
Q Consensus       522 f~~~  525 (530)
                      |+++
T Consensus       118 f~~~  121 (122)
T cd03572         118 FSYS  121 (122)
T ss_pred             hccC
Confidence            9875

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.52  E-value=12  Score=40.48  Aligned_cols=129  Identities=18%  Similarity=0.167  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH
Q 009647          235 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE  314 (530)
Q Consensus       235 ~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~  314 (530)
                      ..+.+-++..+..|-..+   ...++  ..+.+..+++...++|..|+..+|..|.-+.+. ...+...+-.++...+..
T Consensus        60 dRIl~fla~fv~sl~q~d---~e~Dl--V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~  133 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLD---KEEDL--VAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLI  133 (892)
T ss_pred             HHHHHHHHHHHHhhhccC---chhhH--HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHH
Confidence            345555555555554322   22344  458888888888899999999999999999873 233333344456666666


Q ss_pred             HHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHH
Q 009647          315 RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLS  381 (530)
Q Consensus       315 lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Ls  381 (530)
                      .+ ....+.|+..|+.+|+.+-..+.+..           ..+...+..++++ +++.||+.|+-.|+
T Consensus       134 Rl-~Drep~VRiqAv~aLsrlQ~d~~dee-----------~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  134 RL-KDREPNVRIQAVLALSRLQGDPKDEE-----------CPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             HH-hccCchHHHHHHHHHHHHhcCCCCCc-----------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            66 46788999999999999863322211           1355666777754 56789988765544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=81.62  E-value=48  Score=31.33  Aligned_cols=139  Identities=17%  Similarity=0.106  Sum_probs=86.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647          139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL  218 (530)
Q Consensus       139 v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~  218 (530)
                      +|.|+.-+....++..+.....+|..++..+......   .+..+..+... ++.+.+.-+...+..+-..++..  .  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~---v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~--f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP---VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRH--F--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH---HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchH--H--
Confidence            5666665666666788888999999999776212222   33444444444 55555556666666665433211  1  


Q ss_pred             hcCChhhhHhhc--------C--CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHH
Q 009647          219 SQGALPPLARMM--------L--PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAW  287 (530)
Q Consensus       219 ~~g~i~~L~~lL--------~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~  287 (530)
                        +.+..++..+        .  +...+.....++++..+|... |.      .-...++.+..++ .+.++.+...++.
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~------~g~~ll~~ls~~L~~~~~~~~~alale  144 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PD------HGVDLLPLLSGCLNQSCDEVAQALALE  144 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hh------hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence              3344444431        1  113455566678888999754 32      1346788888888 7788889999999


Q ss_pred             HHHHhhc
Q 009647          288 VVVYLSA  294 (530)
Q Consensus       288 ~L~~L~~  294 (530)
                      +|..|+.
T Consensus       145 ~l~~Lc~  151 (234)
T PF12530_consen  145 ALAPLCE  151 (234)
T ss_pred             HHHHHHH
Confidence            9999994

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=81.10  E-value=6.6  Score=34.06  Aligned_cols=70  Identities=10%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC-CcHHHHHHHHHHHHhh
Q 009647          451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY  521 (530)
Q Consensus       451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~-~~~~i~~~A~~il~~~  521 (530)
                      ++..|..-|.++++.++..+|..|+.+.+.|+. .+...|-.-..++.|..+... .+++|+++...+|+.+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W  108 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW  108 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence            455667778889999999999999999987754 234445555677777777666 7899999999999887

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=80.47  E-value=17  Score=32.94  Aligned_cols=112  Identities=19%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             HHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCC-------------------cHHHHHHHhcC-CChhHHHHHH
Q 009647          360 VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-------------------ALALLLHLLST-SPFDIKKEVA  419 (530)
Q Consensus       360 ~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~-------------------~l~~Li~lL~~-~~~~v~~eA~  419 (530)
                      .+.-++.++++.+|..|+.+++.+-.|+.......-+.+                   +-..|+..|+. .+..+....+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l  123 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL  123 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344456778899999999999999988766554443221                   23445555644 4566777888


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      .++..++.+      +|+   +.++.=.=..++..+..++...|+.+...++-++..++..
T Consensus       124 K~la~Lv~~------tPY---~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  124 KCLAVLVQA------TPY---HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHcc------CCh---hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            888888864      342   2221101112344555667778999988888888887643

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.33  E-value=1.2e+02  Score=37.25  Aligned_cols=281  Identities=15%  Similarity=0.103  Sum_probs=131.6

Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ...++..|.. +++..+-.+..+++.++...++..   +-.+..+....-+.+. ++-.+-.-..+++.+-+....-...
T Consensus       878 ~~l~~~sl~~-~~p~~rc~~~ea~arLaq~v~~~~---f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLIN-PNPKLRCAAAEALARLAQVVGSAP---FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhcc-CChHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            3344444444 566666677777777775322111   1111223333333333 3333333344444444432111111


Q ss_pred             hHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          259 ELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      +.  ....+..++.+-.++ +|.|+..++.+++++++.........++ ..+..+..+|..  .+........+++....
T Consensus       954 qh--l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls--~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen  954 QH--LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLS--VPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred             hh--cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCC--CCcchhhhhhhhccccc
Confidence            12  235566667666644 5699999999999999854444332222 223334444432  22222333333333333


Q ss_pred             CCccccchhccc-CCC------------cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647          338 GDSSTISDVLVP-GHG------------ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  404 (530)
Q Consensus       338 ~~~~~~~~~i~~-g~~------------~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li  404 (530)
                      +++.. ..++.+ |.+            ...-.+-...-++.++++.++.+|..++.++-.-.+.+...   .-+++.|.
T Consensus      1029 ~~~~~-~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~ 1104 (2067)
T KOG1822|consen 1029 GDDDE-DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLC 1104 (2067)
T ss_pred             cchhH-HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHH
Confidence            22211 111111 110            01223444455567788899999999999886544332211   12455666


Q ss_pred             HHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH--------------H-hcCChHHHHhhhcc-CCHHHHH
Q 009647          405 HLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL--------------V-GRGCLSGFIDLVRS-ADIEAAR  468 (530)
Q Consensus       405 ~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l--------------~-~~g~i~~L~~lL~~-~d~~i~~  468 (530)
                      .++.+.-.-.++.+..++.-+.....      ..+-++.+.+              . +.|.=-.+..+|.. .|.+++.
T Consensus      1105 ~~l~s~~~i~r~~~~~clrql~~Re~------sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~ 1178 (2067)
T KOG1822|consen 1105 SLLSSSYLILRRASFSCLRQLVQREA------SEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLK 1178 (2067)
T ss_pred             HHhcchhhhhhhhHHhhhhHHhHHHH------HHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHH
Confidence            65555443333333333333322100      0000111111              1 33444455556653 5667888


Q ss_pred             HHHHHHHHHHc
Q 009647          469 LGLQFMELVLR  479 (530)
Q Consensus       469 ~~L~~L~~il~  479 (530)
                      ..++.+.+++.
T Consensus      1179 ~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1179 NILETLSRMLN 1189 (2067)
T ss_pred             HHHHHHHHHHH
Confidence            88888887654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=80.05  E-value=7.7  Score=33.58  Aligned_cols=70  Identities=13%  Similarity=0.187  Sum_probs=54.1

Q ss_pred             ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhh
Q 009647          451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKY  521 (530)
Q Consensus       451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~  521 (530)
                      ++..|..-|.++++.++..+|..|+.+...|+. .+...+-.-+.++.|..+.. ..++.|++++..+++.+
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W  112 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW  112 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence            445667778889999999999999999987753 34455556667777777664 67889999999999876

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		6e-48
4b8j_A	528	Rimp_alpha1a Length = 528		6e-48
2yns_A	490	Rimp_alpha_b54nls Length = 490		2e-45
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-45
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		3e-45
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-45
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		4e-45
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-44
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-44
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-41
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-41
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-41
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-41
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-41
1ial_A	453	Importin Alpha, Mouse Length = 453		3e-41
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		4e-41
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-41
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		4e-41
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		5e-41
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		5e-41
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		5e-41
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		5e-41
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		5e-41
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		8e-41
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-40
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		7e-37
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		9e-37
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-15
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-13
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-08
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-12
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-08
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-04
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		3e-12
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-08
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		6e-06
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		7e-12
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		7e-09
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-10

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  188 bits (478), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 232/502 (46%), Gaps = 35/502 (6%)
Query: 36  QRRRQNAVTVGKERR-ESLVRAKRLCRVGTSADGEVSSDSDMMVDEE-QSILEMQTSSAV 93
           +RR    V + K +R E+L + +        AD +   +S +  D++  S L+ +     
Sbjct: 34  RRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT 93
Query: 94  EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
           ++L S         MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct: 94  QQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
             LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206
Query: 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
           +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 264
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 323
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
           GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct: 324 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
                              +  KKE  + + N   + + G  +P +I+     LV +GC+
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 430
Query: 453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
               DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct: 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490
Query: 504 FHENEDLRNMANGLVDKYFGED 525
            +EN+ +   A  +++ YFGE+
Sbjct: 491 QNENDKIYEKAYKIIETYFGEE 512

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 46/500 (9%)
Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR  N V + K RRE  +  KR  R G  A   V + +   VD++           +E 
Sbjct: 29  RRREDNMVEIRKSRREESLLKKR--REGLQAQAPVPASAATGVDKK-----------LES 75
Query: 96  LKSAVA--YHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
           L + +   Y     +Q  + A             PPIE  +++G +P  VQ L      +
Sbjct: 76  LPAMIGGVYSDDNNLQ--LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQ 133
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
              EAAW LTNIA+G  E TK         I   L   SS  V EQ  WALGNVAG+  +
Sbjct: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 213 FRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 271
            R+++L+ GA LP LA++    K S +R A W LSN  +G  P+P+ E  +    L A+ 
Sbjct: 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-KPQPSFEQTR--PALPALA 250
Query: 272 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS 331
           R +   DEE+ T+  W + YLS  +N     ++++GV   LVE L    S  +LIP LR+
Sbjct: 251 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLHPSPSVLIPALRT 309
Query: 332 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK 391
           +GN+V GD +    ++   H     ++++L + LK   + +KKEA W +SNI AG+ +  
Sbjct: 310 VGNIVTGDDAQTQCII--DHQALPCLLSLLTQNLK---KSIKKEACWTISNITAGNKDQI 364
Query: 392 QXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 451
           Q                   FDIKKE A+ + N     T G        + +  LV  GC
Sbjct: 365 QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN----ATSGGS-----HDQIKYLVSEGC 415
Query: 452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG---------TKLVEREDGIDAMERF 502
           +    DL+   DI    + L+ +E +L+     +          +++++  +G++ +E  
Sbjct: 416 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475
Query: 503 QFHENEDLRNMANGLVDKYF 522
           Q H+N ++   A  +++ Y+
Sbjct: 476 QSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 203/406 (50%), Gaps = 29/406 (7%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AH 186
           PPIE  +++G +P  VQ L      +   EAAW LTNIA+G  E TK         I   
Sbjct: 70  PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 129
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA-LPPLARMMLPNKGSTVRTAAWAL 245
           L   SS  V EQ  WALGNVAG+  + R+++L+ GA LP LA++    K S +R A W L
Sbjct: 130 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 189
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 305
           SN  +G  P+P+ E  +    L A+ R +   DEE+ T+  W + YLS  +N     +++
Sbjct: 190 SNFCRG-KPQPSFEQTR--PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 246
Query: 306 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 365
           +GV   LVE L    S  +LIP LR++GN+V GD +    ++   H     ++++L + L
Sbjct: 247 AGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCII--DHQALPCLLSLLTQNL 303
Query: 366 KSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNL 425
           K   + +KKEA W +SNI AG+ +  Q                   FDIKKE A+ + N 
Sbjct: 304 K---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN- 359
Query: 426 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE 485
               T G        + +  LV  GC+    DL+   DI    + L+ +E +L+     +
Sbjct: 360 ---ATSGGS-----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDK 411
Query: 486 G---------TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                     +++++  +G++ +E  Q H+N ++   A  +++ Y+
Sbjct: 412 TLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 200/426 (46%), Gaps = 26/426 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 13  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 72
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 73  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 132
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 133 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 190
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 249
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 250 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 303
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
                +  KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 304 LEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 356
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
             + L  +E +L         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 357 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 518 VDKYFG 523
           ++ YFG
Sbjct: 417 IETYFG 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 26/428 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 14  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 73
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 74  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 133
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 134 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 191
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 250
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 251 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 304
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
                   KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 305 LEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 357
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
             + L  +E +L         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 358 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 518 VDKYFGED 525
           ++ YFGE+
Sbjct: 418 IETYFGEE 425

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 26/428 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 14  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 73
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 74  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 133
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 134 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 191
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 250
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 251 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 304
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
                   KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 305 LEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 357
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
             + L  +E +L         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 358 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 518 VDKYFGED 525
           ++ YFGE+
Sbjct: 418 IETYFGEE 425

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 200/426 (46%), Gaps = 26/426 (6%)
Query: 108 MQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
           MQ++++A             PPI+  ++AG +P LV+ +    P+   LEAAW LTNIA+
Sbjct: 13  MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 72
Query: 168 GKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPL 226
           G   +TK         +   L    S  V EQ  WALGNVAG+  ++R+ +L   A+ P+
Sbjct: 73  GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 132
Query: 227 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 286
             +   NK S +RTA W LSNL +G  P+P   +  V   L  + + +   D E   +  
Sbjct: 133 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDAC 190
Query: 287 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 346
           W + YLS     A   ++   + + LVE L+  ++L +  P LR++GN+V G+      V
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAVGNIVTGNDLQTQVV 249
Query: 347 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXX 406
           +  G      V+  L   L S    +KKEA W +SNI AG+ E  Q              
Sbjct: 250 INAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 303
Query: 407 XXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
                +  KKE  + + N   + + G  +P +I+     LV +GC+    DL+  AD   
Sbjct: 304 LEVAEYKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCIKPLCDLLEIADNRI 356
Query: 467 ARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGL 517
             + L  +E ++         RG+  +E    +E+  G++ +   Q +EN+ +   A  +
Sbjct: 357 IEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 518 VDKYFG 523
           ++ YFG
Sbjct: 417 IETYFG 422

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 202/440 (45%), Gaps = 26/440 (5%)
Query: 94  EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
           +EL           MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
             LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
           +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct: 121 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 178
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 237
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
           GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct: 238 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
                                 KKE  + + N   + + G  +P +I+     LV +GC+
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 344
Query: 453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
               DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct: 345 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 404
Query: 504 FHENEDLRNMANGLVDKYFG 523
            +EN+ +   A  +++ YFG
Sbjct: 405 QNENDKIYEKAYKIIETYFG 424

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  175 bits (443), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 201/439 (45%), Gaps = 26/439 (5%)
Query: 94  EELKSAVAYHGKGAMQKRVNAXXXXXXXXXXXXXPPIETALKAGAIPVLVQCLAFGSPDE 153
           +EL           MQ++++A             PPI+  ++AG +P LV+ +    P+ 
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 154 QLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEE 212
             LEAAW LTNIA+G   +TK         +   L    S  V EQ  WALGNVAG+  +
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
           +R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P   +  V   L  + +
Sbjct: 121 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAK 178
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            +   D E   +  W + YLS     A   ++   + + LVE L+  ++L +  P LR++
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL-VQTPALRAV 237
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 392
           GN+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q
Sbjct: 238 GNIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 393 XXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 452
                                 KKE  + + N   + + G  +P +I+     LV +GC+
Sbjct: 292 AVIDANLIPPLVKLLEVAEDKTKKEACWAISN---ASSGGLQRPDIIR----YLVSQGCI 344
Query: 453 SGFIDLVRSADIEAARLGLQFMELVL---------RGMPNHEGTKLVEREDGIDAMERFQ 503
               DL+  AD     + L  +E +L         RG+  +E    +E+  G++ +   Q
Sbjct: 345 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 404
Query: 504 FHENEDLRNMANGLVDKYF 522
            +EN+ +   A  +++ YF
Sbjct: 405 QNENDKIYEKAYKIIETYF 423

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 77  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 136
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 137 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 196
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 197 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 254
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 255 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 307
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 308 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 367
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 368 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 418
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 419 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 463

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 75  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 134
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 135 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 194
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 195 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 252
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 253 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 305
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 306 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 365
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 366 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 416
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 417 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 211 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 269 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 321
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 382 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 67  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 126
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 127 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 186
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 187 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 244
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 245 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 297
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 298 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 357
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 358 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 408
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 409 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 41  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 47  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 106
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 107 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 167 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 224
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 225 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 277
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 278 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 337
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 338 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 389 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 40  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 99
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 100 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 159
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 160 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 217
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 218 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 270
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 331 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 41  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 40  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 99
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 100 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 159
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 160 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 217
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 218 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 270
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 271 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 330
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 331 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 41  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 100
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 101 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 160
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 161 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 219 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 271
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 272 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 331
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 332 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 36  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 95
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 96  LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 155
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 156 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 214 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 266
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 327 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 36  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 95
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 96  LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 155
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 156 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 214 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 266
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE A+ 
Sbjct: 267 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 326
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 327 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 188/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 42  PPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 101
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG+G  FR++++  GA+ P LA + +P+  S     +R  
Sbjct: 102 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 161
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P  +   V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 162 TWTLSNLCRNKNPAPPID--AVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIG 219
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK+GV+  LV+ L  S  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 220 MVVKTGVVPQLVKLLGAS-ELPIVTPALRAIGNIVTGTDEQTQVVIDAG------ALAVF 272
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +KE  + 
Sbjct: 273 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWA 332
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +   + L  +  + +  
Sbjct: 333 VTNYTSGGT---------VEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAA 383
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 384 EKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYF 428

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 187/405 (46%), Gaps = 28/405 (6%)
Query: 128 PPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXX-XXXXIAH 186
           PPI+  ++AG IP  V  L          E+AW LTNIA+G  E+TK             
Sbjct: 110 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 169
Query: 187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP-LARMMLPNKGS----TVRTA 241
           L     + ++EQ  WALGN+AG G  FR++++  GA+ P LA + +P+  +     +R  
Sbjct: 170 LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229
Query: 242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 301
            W LSNL +  +P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    
Sbjct: 230 TWTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 287
Query: 302 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 361
           ++VK GV+  LV+ L  +  L ++ P LR++GN+V G       V+  G       +AV 
Sbjct: 288 MVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAG------ALAVF 340
Query: 362 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYV 421
              L +    ++KEA W +SNI AG  +  Q                   F  +K  A+ 
Sbjct: 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400
Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           + N     T          E +V LV  G +   ++L+ + D +  ++ L  +  + +  
Sbjct: 401 ITNYTSGGT---------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451
Query: 482 PNHEGTK----LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
                T+    ++E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 30/410 (7%)
Query: 128 PPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-A 185
           PPI+  +   G +   V+ L          E+AW LTNIA+G   +T+         I  
Sbjct: 51  PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 110
Query: 186 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWA 244
            L       V EQ  WALGN+AG+    R+ +L    LPPL ++    N+ +  R A WA
Sbjct: 111 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 170
Query: 245 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV 304
           LSNL +G  P P  E  KV   L+ +   L  +D ++  +  W + YLS   N     ++
Sbjct: 171 LSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 228
Query: 305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 364
            +GV + LVE L   N  +++ P LR++GN+V GD      +L      +   +    K 
Sbjct: 229 DAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK- 286
Query: 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGN 424
                  +KKEA W +SNI AG+    Q                   F  +KE A+ + N
Sbjct: 287 -----ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 341
Query: 425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----- 479
                T G        E +  LV  GC+    DL+   D +  ++ L  +E +LR     
Sbjct: 342 ----ATSGGSA-----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 392
Query: 480 ----GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 525
               G   +    L+E   G+D +E  Q HEN+++   A  L++ YFG +
Sbjct: 393 AKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 442

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  151 bits (382), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 180/410 (43%), Gaps = 30/410 (7%)
Query: 128 PPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKXXXXXXXXXI-A 185
           PPI+  +   G +   V+ L          E+AW LTNIA+G   +T+         I  
Sbjct: 54  PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113
Query: 186 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWA 244
            L       V EQ  WALGN+AG+    R+ +L    LPPL ++    N+ +  R A WA
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173
Query: 245 LSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV 304
           LSNL +G  P P  E  KV   L+ +   L  +D ++  +  W + YLS   N     ++
Sbjct: 174 LSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 305 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 364
            +GV + LVE L   N  +++ P LR++GN+V GD      +L      +   +    K 
Sbjct: 232 DAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK- 289
Query: 365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGN 424
                  +KKEA W +SNI AG+    Q                   F  +KE A+ + N
Sbjct: 290 -----ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344
Query: 425 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR----- 479
                T G        E +  LV  GC+    DL+   D +  ++ L  +E +LR     
Sbjct: 345 ----ATSGGSA-----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395
Query: 480 ----GMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 525
               G   +    L+E   G+D +E  Q HEN+++   A  L++ YFG +
Sbjct: 396 AKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 16/175 (9%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 300
           SN+  G + +   + +   G L A+++ L   +E++  E  W      ALSN+A+
Sbjct: 163 SNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALW------ALSNIAS 209

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 206 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 265
           +  +G E    ++  GALP L +++       ++ A WALSN+  G + +   + +   G
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--IQAVIDAG 96
Query: 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 325
            L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+L
Sbjct: 97  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QIL 155
Query: 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
              L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA+
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 386 GSVEHKQ 392
           G  E KQ
Sbjct: 210 GGNEQKQ 216

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362
           ++ +G L  LV+ L++ N  Q+L   L +L N+ +G +  I  V+  G       +  LV
Sbjct: 50  VIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAG------ALPALV 102
Query: 363 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVL 422
           + L S +  + +EA W LSNIA+G  E  Q                     I +E  + L
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482
            N+     E           + +++  G L   + L+ S + +  +  L  +  +  G  
Sbjct: 163 SNIASGGNE----------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-- 210
Query: 483 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 521
            +E  + V+    ++ +E+ Q HENE ++  A   ++K 
Sbjct: 211 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXX-XXXXIAHL 187
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +          +  L
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 188 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 247
               +  + ++  WAL N+A  G E    ++  GALP L +++       ++ A WALSN
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV 285
           +  G + +   + +K  G L+ + +     +E++  E 
Sbjct: 165 IASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKEA 200

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
           G L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 385 AGSVEHKQ 392
           +G  E KQ
Sbjct: 167 SGGNEQKQ 174

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 318 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 377
            S+ +Q  +   R    +++  +  I  V+  G       +  LV+ L S +  + +EA 
Sbjct: 22  NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEAL 75
Query: 378 WVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTEGEGKPK 437
           W LSNIA+G  E  Q                     I +E  + L N+     E      
Sbjct: 76  WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------ 129
Query: 438 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 497
                + +++  G L   + L+ S + +  +  L  +  +  G   +E  + V+    ++
Sbjct: 130 ----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALE 183
Query: 498 AMERFQFHENEDLRNMANGLVDK 520
            +E+ Q HENE ++  A   ++K
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEK 206

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ--AVIDAGALPALV 102
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 246 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV 285
           SN+  G + +   + +K  G L+ + +     +E++  E 
Sbjct: 163 SNIASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKEA 200

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
           G L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 385 AGSVEHKQ 392
           +G  E KQ
Sbjct: 167 SGGNEQKQ 174

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371
           +V++L + +  Q L   LR L  + +G +  I  V+  G       +  LV+ L S +  
Sbjct: 17  MVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQ 69
Query: 372 LKKEAAWVLSNIAAGSVEHKQXXXXXXXXXXXXXXXXXXPFDIKKEVAYVLGNLCVSPTE 431
           + +EA W LSNIA+G  E  Q                     I +E  + L N+     E
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVE 491
                      + +++  G L   + L+ S + +  +  L  +  +  G   +E  + V+
Sbjct: 130 ----------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVK 177
Query: 492 REDGIDAMERFQFHENEDLRNMANGLVDKY 521
               ++ +E+ Q HENE ++  A   ++K 
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKXXXXXXXXXIAHLG 188
           I+  + AGA+P LVQ L+  SP+EQ+L EA W L+NIA+G  E+ +         +  L 
Sbjct: 47  IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGA--LPALV 102
Query: 189 EKSSSP---VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL 245
           +  SSP   + ++  WAL N+A  G E    ++  GALP L +++       ++ A WAL
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 246 SNLIKG 251
           SN+  G
Sbjct: 163 SNIASG 168

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
           G L A+++ L   +E++  E  W +  +++  N     ++ +G L  LV+ L++ N  Q+
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 112
Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 385 AGSVEHKQ 392
           +G  E KQ
Sbjct: 167 SGGNEQKQ 174

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 16/234 (6%)
Query: 157 EAAWCLTNIAAGKQEETKXXXXXXXXXI-AHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 215
           EAA  L  IA+G     K         +   L   + S V ++ A AL N+A   +E   
Sbjct: 21  EAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80
Query: 216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VD-GLLDAILR 272
            ++  G +  L +++        + AA AL+N+  GPD     E IK  VD G ++ +++
Sbjct: 81  AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-----EAIKAIVDAGGVEVLVK 135
Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            L   D E+  E A  +  +++  + A   +V +G +++LV +L TS   ++     R+L
Sbjct: 136 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV-KLLTSTDSEVQKEAARAL 194
Query: 333 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386
            N+ +G +S I  ++  G       + VL K L S    ++KEA   L NI +G
Sbjct: 195 ANIASGPTSAIKAIVDAGG------VEVLQKLLTSTDSEVQKEAQRALENIKSG 242

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-101
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-24
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-45
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-36
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-32
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-28
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-41
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-40
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-35
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-29
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-29
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-29
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-29
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-31
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-26
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  315 bits (807), Expect = e-101
 Identities = 144/501 (28%), Positives = 238/501 (47%), Gaps = 33/501 (6%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR    V + K +R+  +  +R        DG  S + D            Q    + +
Sbjct: 34  RRRDTQQVELRKAKRDEALAKRR--NFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 91

Query: 96  LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL 155
           +   +       MQ++++A  + R++LSR   PPI+  ++AG +P LV+ +    P+   
Sbjct: 92  MTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 148

Query: 156 LEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 213
           LEAAW LTNIA+G   +TK ++   A+PL I  L    S  V EQ  WALGNVAG+  ++
Sbjct: 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 207

Query: 214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 273
           R+ +L   A+ P+  +   NK S +RTA W LSNL +G  P+P  +   V   L  + + 
Sbjct: 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP--DWSVVSQALPTLAKL 265

Query: 274 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333
           +   D E   +  W + YLS     A   ++   + + LVE L +  S  +  P LR++G
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHESTLVQTPALRAVG 324

Query: 334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 393
           N+V G+      V+  G      V+  L   L S    +KKEA W +SNI AG+ E  Q 
Sbjct: 325 NIVTGNDLQTQVVINAG------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 378

Query: 394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453
           +  +  +  L+ LL  + +  KKE  + + N      +         + +  LV +GC+ 
Sbjct: 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-------RPDIIRYLVSQGCIK 431

Query: 454 GFIDLVRSADIEAARLGLQFMELVLR---------GMPNHEGTKLVEREDGIDAMERFQF 504
              DL+  AD     + L  +E +L+         G+  +E    +E+  G++ +   Q 
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ 491

Query: 505 HENEDLRNMANGLVDKYFGED 525
           +EN+ +   A  +++ YFGE+
Sbjct: 492 NENDKIYEKAYKIIETYFGEE 512

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  301 bits (772), Expect = 1e-96
 Identities = 139/506 (27%), Positives = 240/506 (47%), Gaps = 35/506 (6%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
                + +       +    AK   +   S D  + +D D     +    +   + +VE+
Sbjct: 4   HHHHSSGLVPRGSGMKETAAAKFERQHMDSPD--LGTDDDDKAMADIGSNQGTVNWSVED 61

Query: 96  LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL 155
           +   +       ++ ++ A +  R+LLSR + PPI+  ++AG IP  V  L         
Sbjct: 62  IVKGIN---SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118

Query: 156 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 213
            E+AW LTNIA+G  E+TKA++   A+P  I+ L     + ++EQ  WALGN+AG+G  F
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAF 177

Query: 214 RNVLLSQGALPPLARMMLPNKGST-----VRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
           R++++  GA+ PL  ++     ST     +R   W LSNL +  +P P   L  V+ +L 
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP--PLDAVEQILP 235

Query: 269 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 328
            ++R L   D E+  +  W + YL+   N    ++VK GV+  LV+ L  +  L ++ P 
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK-LLGATELPIVTPA 294

Query: 329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 388
           LR++GN+V G       V+  G       +AV    L +    ++KEA W +SNI AG  
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAG------ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

Query: 389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 448
           +  Q + +   +  L+ +LS + F  +KE A+ + N     T          E +V LV 
Sbjct: 349 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---------VEQIVYLVH 399

Query: 449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT----KLVEREDGIDAMERFQF 504
            G +   ++L+ + D +  ++ L  +  + +       T     ++E   G+D +E  Q 
Sbjct: 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459

Query: 505 HENEDLRNMANGLVDKYFGEDYGLDE 530
           HENE +   +  L++KYF  +   D+
Sbjct: 460 HENESVYKASLNLIEKYFSVEEEEDQ 485

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  293 bits (752), Expect = 2e-94
 Identities = 128/426 (30%), Positives = 203/426 (47%), Gaps = 32/426 (7%)

Query: 113 NALRELRRLLSRFEFPPIETAL-KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 171
           +A ++ R+LLS+   PPI+  +   G +   V+ L          E+AW LTNIA+G   
Sbjct: 39  SATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98

Query: 172 ETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229
           +T+ ++   A+P+ I  L       V EQ  WALGN+AG+    R+ +L    LPPL ++
Sbjct: 99  QTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157

Query: 230 ML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 288
               N+ +  R A WALSNL +G  P P  E  KV   L+ +   L  +D ++  +  W 
Sbjct: 158 FSKQNRLTMTRNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWA 215

Query: 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 348
           + YLS   N     ++ +GV + LVE L   N  +++ P LR++GN+V GD      +L 
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVE-LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274

Query: 349 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408
                    +  L+  L S    +KKEA W +SNI AG+    Q +  +     L+ +L 
Sbjct: 275 CS------ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328

Query: 409 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468
           T+ F  +KE A+ + N     +          E +  LV  GC+    DL+   D +  +
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSA---------EQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 469 LGLQFMELVLRGMPNHEGT---------KLVEREDGIDAMERFQFHENEDLRNMANGLVD 519
           + L  +E +LR                  L+E   G+D +E  Q HEN+++   A  L++
Sbjct: 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439

Query: 520 KYFGED 525
            YFG +
Sbjct: 440 HYFGTE 445

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  106 bits (265), Expect = 1e-24
 Identities = 58/315 (18%), Positives = 130/315 (41%), Gaps = 23/315 (7%)

Query: 204 GNVAGEGEEFRNVLLSQ--GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 261
           G +     +  N+ ++        +  M+         +A      L+      P  E+I
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 262 KVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN 320
              G++   +  LKR +   L  E AWV+  +++ +++ T +++++G + + +E L +S 
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSSE 119

Query: 321 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWV 379
              +    + +LGN+ AGDS+   D ++    I    +  L++    ++R+ + + A W 
Sbjct: 120 FEDVQEQAVWALGNI-AGDSTMCRDYVL-DCNI----LPPLLQLFSKQNRLTMTRNAVWA 173

Query: 380 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 439
           LSN+  G     +    S  L +L  LL  S  D+  +  + L  L   P +   K + +
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND---KIQAV 230

Query: 440 QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 499
            +        G     ++L+   D +     L+ +  ++ G  +   T+++     + ++
Sbjct: 231 IDA-------GVCRRLVELLMHNDYKVVSPALRAVGNIVTG--DDIQTQVILNCSALQSL 281

Query: 500 ERFQFHENEDLRNMA 514
                   E ++  A
Sbjct: 282 LHLLSSPKESIKKEA 296

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  157 bits (399), Expect = 8e-45
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 10/233 (4%)

Query: 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIA 166
           MQ++++A R+  ++LS      I+  + AGA+P LVQ L   SP+EQ+L EA W L+NIA
Sbjct: 26  MQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIA 82

Query: 167 AGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALP 224
           +G  E+ +A++   ALP L+  L    +  + ++  WAL N+A  G E    ++  GALP
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141

Query: 225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 284
            L +++       ++ A WALSN+  G + +   + +   G L A+++ L   +E++  E
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQE 199

Query: 285 VAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337
             W +  +++  N     + ++G L+ L + L +  + ++      +L  L +
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  131 bits (332), Expect = 2e-35
 Identities = 61/258 (23%), Positives = 113/258 (43%), Gaps = 19/258 (7%)

Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
             L  + + L   D +           + +  N     ++ +G L  LV+ L +S + Q+
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ-LLSSPNEQI 70

Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
           L   L +L N+ +G +  I  V+  G       +  LV+ L S +  + +EA W LSNIA
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAG------ALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 385 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 444
           +G  E  Q +  + AL  L+ LLS+    I +E  + L N+               E + 
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----------EQIQ 174

Query: 445 SLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF 504
           +++  G L   + L+ S + +  +  L  +  +  G   +E  + V+    ++ +E+ Q 
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQS 232

Query: 505 HENEDLRNMANGLVDKYF 522
           HENE ++  A   ++K  
Sbjct: 233 HENEKIQKEAQEALEKLQ 250

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  161 bits (410), Expect = 9e-44
 Identities = 76/435 (17%), Positives = 145/435 (33%), Gaps = 56/435 (12%)

Query: 108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 167
           ++        L  L    E   +    K+G IP LV+ L           A   L N+  
Sbjct: 74  VETARCTAGTLHNLSHHRE--GLLAIFKSGGIPALVKMLGSPVDSVLF-YAITTLHNLLL 130

Query: 168 GKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP 225
            ++    A+     L  ++A L + +           L  +A   +E + ++L+ G    
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVK-FLAITTDCLQILAYGNQESKLIILASGGPQA 189

Query: 226 LARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 284
           L  +M        + T +  L  L      KPA   I   G + A+  HL    + L   
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRLVQN 246

Query: 285 VAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 344
             W    L  LS+ AT      G+L  LV+ L  S+ + ++      L NL   +     
Sbjct: 247 CLWT---LRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYKNKM 302

Query: 345 DVLVPGHGITDQVIAVLVKCL--KSEHRVLKKEAAWVLSNIAAGSVEH---KQLIHSSEA 399
            V   G       I  LV+ +    +   + + A   L ++ +   E    +  +     
Sbjct: 303 MVCQVG------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356

Query: 400 LALLLHLLSTSPFDIKKEVAY-VLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL 458
           L +++ LL         +    ++ NL + P            +   L  +G +   + L
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQL 405

Query: 459 VRSADIEAAR-----------LGLQFMELVLRGM--------PNHEGTKLVEREDGIDAM 499
           +  A  +  R           +    ME ++ G          +     ++   + I   
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465

Query: 500 ERFQFHENEDLRNMA 514
            +  +   E+++ +A
Sbjct: 466 VQLLYSPIENIQRVA 480

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  148 bits (375), Expect = 6e-39
 Identities = 66/421 (15%), Positives = 136/421 (32%), Gaps = 34/421 (8%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
              A+  L  LL   E   +     AG +  +V  L   +  + L     CL  +A G Q
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQ 175

Query: 171 EETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 228
           E    +L       L+  +   +   +    +  L  ++      +  ++  G +  L  
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGL 234

Query: 229 MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 288
            +       V+   W L NL         T+   ++GLL  +++ L   D  + T  A +
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289

Query: 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVL 347
           +  L+  +     ++ + G ++ LV  +  +     +  P + +L +L +         +
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE---AEM 346

Query: 348 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 407
                     + V+VK L         +A   L    A    +   +    A+  L+ LL
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 408 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS--------------LVGRGCLS 453
             +  D ++  +               + + I E                  + G   + 
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFV---EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 454 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM 513
            F+ L+ S      R+      ++     + E  + +E E     +       NE +   
Sbjct: 464 LFVQLLYSPIENIQRVAA---GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520

Query: 514 A 514
           A
Sbjct: 521 A 521

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  146 bits (371), Expect = 2e-38
 Identities = 60/358 (16%), Positives = 121/358 (33%), Gaps = 28/358 (7%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
              A   + +L S+ E            +  +V+ +   +  E     A  L N++    
Sbjct: 34  VNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HH 90

Query: 171 EETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 227
            E    +     +P L+  LG    S V       L N+    E  +  +   G L  + 
Sbjct: 91  REGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149

Query: 228 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW 287
            ++       +      L  L  G        +I   G   A++  ++    E       
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTS 207

Query: 288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVL 347
            V+ + ++ +     +V++G +Q L     T  S +L+   L +L NL    +       
Sbjct: 208 RVLKVLSVCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATKQE---- 262

Query: 348 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 407
                  + ++  LV+ L S+   +   AA +LSN+   + ++K ++     +  L+  +
Sbjct: 263 -----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317

Query: 408 --STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 463
             +    DI +     L +L     E E     ++ H         L   + L+    
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-------YGLPVVVKLLHPPS 368

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  139 bits (351), Expect = 9e-36
 Identities = 55/300 (18%), Positives = 112/300 (37%), Gaps = 16/300 (5%)

Query: 134 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 191
           L   AIP L + L          +AA  +  ++  +      +     +  ++  +   +
Sbjct: 14  LATRAIPELTKLLNDEDQVVV-NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 251
               A   A  L N++    E    +   G +P L +M+     S +  A   L NL+  
Sbjct: 73  DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 311
            +   A   +++ G L  ++  L + + +        +  L+  +  +  +++ SG  Q 
Sbjct: 132 QE--GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189

Query: 312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371
           LV  + T    +LL    R L  L +  SS    ++  G       +  L   L    + 
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAG------GMQALGLHLTDPSQR 242

Query: 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 431
           L +   W L N++  + + + +      L  L+ LL +   ++    A +L NL  +  +
Sbjct: 243 LVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  128 bits (323), Expect = 6e-32
 Identities = 57/335 (17%), Positives = 110/335 (32%), Gaps = 25/335 (7%)

Query: 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 168
           +      R L+ +LS          ++AG +  L   L   S    +    W L N++  
Sbjct: 201 KLLWTTSRVLK-VLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDA 257

Query: 169 KQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 228
             ++   +   L  L+  L       V    A  L N+     + + ++   G +  L R
Sbjct: 258 ATKQE-GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315

Query: 229 MMLPN--KGSTVRTAAWALSNLIKG-PDPKPATELIKVDGLLDAILRHLKRADEELTTEV 285
            +L    +      A  AL +L     + + A   +++   L  +++ L         + 
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375

Query: 286 AWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD 345
              ++   AL     + L + G +  LV+ L                      +   + +
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434

Query: 346 VLVPGHGI---------------TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 390
           ++    G                    I + V+ L S    +++ AA VL  +A    E 
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEA 493

Query: 391 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 425
            + I +  A A L  LL +    +    A VL  +
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  117 bits (294), Expect = 3e-28
 Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 15/274 (5%)

Query: 179 ALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGS 236
           A+P L   L        V  + A  +  ++ +      ++ S   +  + R M   N   
Sbjct: 18  AIPELTKLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 296
           T R  A  L NL    +       I   G + A+++ L    + +       +  L    
Sbjct: 76  TARCTAGTLHNLSHHREGL---LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 297 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 356
             A   +  +G LQ +V  L    +++ L      L  L  G+  +   +L  G      
Sbjct: 133 EGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASG------ 185

Query: 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416
               LV  +++            +  + +    +K  I  +  +  L   L+     + +
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
              + L NL  + T+ EG   L+   LV L+G  
Sbjct: 246 NCLWTLRNLSDAATKQEGMEGLLG-TLVQLLGSD 278

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  103 bits (259), Expect = 8e-24
 Identities = 45/268 (16%), Positives = 98/268 (36%), Gaps = 24/268 (8%)

Query: 202 ALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 261
           A+ N+    +   +  L+  A+P L +++       V  AA  +  L K    +    ++
Sbjct: 1   AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR--HAIM 55

Query: 262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS 321
           +   ++ AI+R ++  ++  T       ++  +        + KSG +  LV+ L +   
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115

Query: 322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 381
             +L   + +L NL+         V + G       +  +V  L   +          L 
Sbjct: 116 -SVLFYAITTLHNLLLHQEGAKMAVRLAG------GLQKMVALLNKTNVKFLAITTDCLQ 168

Query: 382 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE-VAYVLGNLCVSPTEGEGKPKLIQ 440
            +A G+ E K +I +S     L++++ T  ++      + VL  L V       KP +++
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE 225

Query: 441 EHLVSLVGRGCLSGFIDLVRSADIEAAR 468
                    G +      +        +
Sbjct: 226 A--------GGMQALGLHLTDPSQRLVQ 245

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 99.5 bits (248), Expect = 2e-22
 Identities = 46/276 (16%), Positives = 86/276 (31%), Gaps = 38/276 (13%)

Query: 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 193
            G +  LVQ L     +     AA  L+N+     +    +     +  L+  +      
Sbjct: 265 EGLLGTLVQLLGSDDINVVT-CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 194 P-VAEQCAWALGNVA---GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 249
             + E    AL ++     E E  +N +     LP + +++ P     +  A   L   +
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 250 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY----------------LS 293
               P     L +   +   +++ L RA ++     +                       
Sbjct: 384 AL-CPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 441

Query: 294 ALSNVATS-----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 348
           AL  +A       ++     + L V+ L  S    +       L  L A D      +  
Sbjct: 442 ALHILARDVHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEA 499

Query: 349 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
            G        A L + L S +  +   AA VL  ++
Sbjct: 500 EG------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  157 bits (398), Expect = 3e-41
 Identities = 57/356 (16%), Positives = 121/356 (33%), Gaps = 24/356 (6%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
              A   + +L S+ E            +  +V+ +   +  E     +  L N++  ++
Sbjct: 167 VNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225

Query: 171 -EETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229
                     +P L+  LG    S V       L N+    E  +  +   G L  +  +
Sbjct: 226 GLLAIFKSGGIPALVNMLGSPVDS-VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284

Query: 230 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 289
           +       +      L  L  G        +I   G   A++  ++    E        V
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQES--KLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342

Query: 290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 349
           + + ++ +     +V++G +Q L     T  S +L+   L +L NL    +         
Sbjct: 343 LKVLSVCSSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAAT--------- 392

Query: 350 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-- 407
                + ++  LV+ L S+   +   AA +LSN+   + ++K ++     +  L+  +  
Sbjct: 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452

Query: 408 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 463
           +    DI +     L +L     + E     ++ H         L   + L+    
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH-------YGLPVVVKLLHPPS 501

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  153 bits (387), Expect = 9e-40
 Identities = 70/422 (16%), Positives = 143/422 (33%), Gaps = 40/422 (9%)

Query: 113 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172
           +A+  L  LL   E   +     AG +  +V  L   +  + L     CL  +A G QE 
Sbjct: 253 HAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQES 310

Query: 173 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 230
              +L       L+  +   +   +    +  L  ++      +  ++  G +  L   +
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL 369

Query: 231 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 290
                  V+   W L NL         T+   ++GLL  +++ L   D  + T  A ++ 
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424

Query: 291 YLSALSNVATSLLVKSGVLQLLVERL-ATSNSLQLLIPVLRSLGNLVAG--DSSTISDVL 347
            L+  +     ++ + G ++ LV  +    +   +  P + +L +L +   D+    + +
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484

Query: 348 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 407
              +G+      V+VK L         +A   L    A    +   +    A+  L+ LL
Sbjct: 485 RLHYGL-----PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539

Query: 408 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS--------------LVGRGCLS 453
             +  D ++  +               + + I E                  + G   + 
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFV---EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 454 GFIDLVRSADIEAARLGLQFMELVLRGM-PNHEGTKLVEREDGIDAMERFQFHENEDLRN 512
            F+ L+ S      R+       VL  +  + E  + +E E     +       NE +  
Sbjct: 597 LFVQLLYSPIENIQRVAAG----VLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 652

Query: 513 MA 514
            A
Sbjct: 653 YA 654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  139 bits (352), Expect = 3e-35
 Identities = 68/388 (17%), Positives = 128/388 (32%), Gaps = 23/388 (5%)

Query: 65  SADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSR 124
           S  G+ + + D + ++     E   + +  + + A         + +          L  
Sbjct: 45  SLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104

Query: 125 FEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLI 184
               P      A   P  VQ LA   P + L  A   L N     Q++ +    A+P L 
Sbjct: 105 GMQIPSTQFDSA--HPTNVQRLA--EPSQMLKHAVVNLIN----YQDDAELATRAIPELT 156

Query: 185 AHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAA 242
             L        V  + A  +  ++ +      ++ S   +  + R M   N   T R  +
Sbjct: 157 KLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214

Query: 243 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL 302
             L NL    +       I   G + A++  L    + +       +  L      A   
Sbjct: 215 GTLHNLSHHREGL---LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271

Query: 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362
           +  +G LQ +V  L    +++ L      L  L  G+  +   +L  G          LV
Sbjct: 272 VRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASG------GPQALV 324

Query: 363 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422
             +++            +  + +    +K  I  +  +  L   L+     + +   + L
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

Query: 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
            NL  + T+ EG   L+   LV L+G  
Sbjct: 385 RNLSDAATKQEGMEGLLG-TLVQLLGSD 411

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  108 bits (271), Expect = 5e-25
 Identities = 48/300 (16%), Positives = 92/300 (30%), Gaps = 38/300 (12%)

Query: 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 193
            G +  LVQ L     +     AA  L+N+     +    +     +  L+  +      
Sbjct: 398 EGLLGTLVQLLGSDDINVVT-CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456

Query: 194 P-VAEQCAWALGNVA---GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 249
             + E    AL ++     + E  +N +     LP + +++ P     +  A   L   +
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

Query: 250 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS---------------- 293
               P     L +   +   +++ L RA ++     +                       
Sbjct: 517 AL-CPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTG 574

Query: 294 ALSNVATS-----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 348
           AL  +A       ++     + L V+ L  S    +       L  L A D      +  
Sbjct: 575 ALHILARDIHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEA 632

Query: 349 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408
            G        A L + L S +  +   AA VL  ++    +  +   S E  + L     
Sbjct: 633 EG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 88.9 bits (220), Expect = 9e-19
 Identities = 41/279 (14%), Positives = 86/279 (30%), Gaps = 24/279 (8%)

Query: 236 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 295
              +    A+ NLI   D     +       +  + + L   D+ +  + A +V  LS  
Sbjct: 126 EPSQMLKHAVVNLINYQD-----DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK 180

Query: 296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 355
                +++    ++  +V  +  +N ++       +L NL       ++     G     
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG----- 235

Query: 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 415
             I  LV  L S    +   A   L N+       K  +  +  L  ++ LL+ +     
Sbjct: 236 --IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293

Query: 416 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 475
                 L  L              QE  + ++  G     ++++R+   E        + 
Sbjct: 294 AITTDCLQILAYGN----------QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 476 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 514
            VL           +    G+ A+       ++ L    
Sbjct: 344 KVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  152 bits (385), Expect = 6e-40
 Identities = 65/419 (15%), Positives = 133/419 (31%), Gaps = 34/419 (8%)

Query: 113 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 172
            A+  L  LL   E   +     AG +  +V  L   +          CL  +A G QE 
Sbjct: 117 YAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNVKFLA-ITTDCLQILAYGNQES 174

Query: 173 TKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 230
              +L       L+  +   +   +    +  L  ++      +  ++  G +  L   +
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL 233

Query: 231 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 290
                  V+   W L NL         T+   ++GLL  +++ L   D  + T  A ++ 
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 291 YLSALSNVATSLLVKSGVLQLLVERL-ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 349
            L+  +     ++ + G ++ LV  +    +   +  P + +L +L +            
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA- 347

Query: 350 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 409
                   + V+VK L         +A   L    A    +   +    A+  L+ LL  
Sbjct: 348 --VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405

Query: 410 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS--------------LVGRGCLSGF 455
           +  D ++  +               + + I E                  + G   +  F
Sbjct: 406 AHQDTQRRTSMGGTQQQFV---EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462

Query: 456 IDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 514
           + L+ S      R+      ++     + E  + +E E     +       NE +   A
Sbjct: 463 VQLLYSPIENIQRVAA---GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  146 bits (369), Expect = 1e-37
 Identities = 55/300 (18%), Positives = 108/300 (36%), Gaps = 16/300 (5%)

Query: 134 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 191
           L   AIP L + L          +AA  +  ++  +      +     +  ++  +   +
Sbjct: 11  LATRAIPELTKLLNDEDQVVV-NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69

Query: 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 251
               A   A  L N++    E    +   G +P L +M+     S +  A   L NL+  
Sbjct: 70  DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128

Query: 252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 311
            +   A   +++ G L  ++  L + + +        +  L+  +  +  +++ SG  Q 
Sbjct: 129 QE--GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186

Query: 312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 371
           LV  + T    +LL    R L  L    S+  + V   G       +  L   L    + 
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-------MQALGLHLTDPSQR 239

Query: 372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTE 431
           L +   W L N++       +       L  L+ LL +   ++    A +L NL  +  +
Sbjct: 240 LVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  145 bits (366), Expect = 2e-37
 Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 24/359 (6%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
              A   + +L S+ E            +  +V+ +   +  E     A  L N++  ++
Sbjct: 31  VNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89

Query: 171 EETK-ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229
                     +P L+  LG    S V       L N+    E  +  +   G L  +  +
Sbjct: 90  GLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148

Query: 230 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 289
           +       +      L  L  G        +I   G   A++  ++    E        V
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTSRV 206

Query: 290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 349
           + + ++ +     +V++G +Q L     T  S +L+   L +L NL    +         
Sbjct: 207 LKVLSVCSSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQEGM---- 261

Query: 350 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-- 407
                + ++  LV+ L S+   +   AA +LSN+   + ++K ++     +  L+  +  
Sbjct: 262 -----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316

Query: 408 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA 466
           +    DI +     L +L     E E     ++ H         L   + L+       
Sbjct: 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-------YGLPVVVKLLHPPSHWP 368

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  117 bits (295), Expect = 3e-28
 Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 17/275 (6%)

Query: 179 ALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGS 236
           A+P L   L        V  + A  +  ++ +      ++ S   +  + R M   N   
Sbjct: 15  AIPELTKLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 72

Query: 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 296
           T R  A  L NL    +       I   G + A+++ L    + +       +  L    
Sbjct: 73  TARCTAGTLHNLSHHREGL---LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 297 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 356
             A   +  +G LQ +V  L    +++ L      L  L  G+  +   +L  G      
Sbjct: 130 EGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASG------ 182

Query: 357 VIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 415
               LV  +++  +  L    + VL  ++  S  +K  I  +  +  L   L+     + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLV 241

Query: 416 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 450
           +   + L NL  + T+ EG   L+   LV L+G  
Sbjct: 242 QNCLWTLRNLSDAATKQEGMEGLLG-TLVQLLGSD 275

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  111 bits (278), Expect = 5e-26
 Identities = 53/328 (16%), Positives = 98/328 (29%), Gaps = 41/328 (12%)

Query: 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 193
            G +  LVQ L     +     AA  L+N+     +    +     +  L+  +      
Sbjct: 262 EGLLGTLVQLLGSDDINVVT-CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 194 P-VAEQCAWALGNVA---GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLI 249
             + E    AL ++     E E  +N +     LP + +++ P     +  A   L   +
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 250 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS---------------- 293
                      ++  G +  +++ L RA ++     +                       
Sbjct: 381 ALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 438

Query: 294 ALSNVATS-----LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 348
           AL  +A       ++     + L V+ L  S    +       L  L A D      +  
Sbjct: 439 ALHILARDVHNRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEA 496

Query: 349 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408
            G        A L + L S +  +   AA VL  ++    +  +   S E   L   L  
Sbjct: 497 EG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE---LTSSLFR 547

Query: 409 TSPFDIKKEVAYVLGNLCVSPTEGEGKP 436
           T P    +     L         G  + 
Sbjct: 548 TEPMAWNETADLGLDIGAQGEPLGYRQD 575

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  103 bits (257), Expect = 2e-23
 Identities = 49/301 (16%), Positives = 109/301 (36%), Gaps = 26/301 (8%)

Query: 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 274
           +  L+  A+P L +++       V  AA  +  L K    +    +++   ++ AI+R +
Sbjct: 8   DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTM 65

Query: 275 KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 334
           +  ++  T       ++  +        + KSG +  LV+ L +     +L   + +L N
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHN 124

Query: 335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI 394
           L+         V + G       +  +V  L   +          L  +A G+ E K +I
Sbjct: 125 LLLHQEGAKMAVRLAG------GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 395 HSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 453
            +S     L++++ + +   +    + VL  L V       KP +++         G + 
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVEA--------GGMQ 227

Query: 454 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM 513
                +        +  L      LR + +   TK    E  +  + +    ++ ++   
Sbjct: 228 ALGLHLTDPSQRLVQNCLW----TLRNL-SDAATKQEGMEGLLGTLVQLLGSDDINVVTC 282

Query: 514 A 514
           A
Sbjct: 283 A 283

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 24/175 (13%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT 354
           L N      + +  +  L + L       ++      +  L   ++S  + +  P     
Sbjct: 2   LINYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ---- 56

Query: 355 DQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD 413
             +++ +V+ +++       +  A  L N++    E    I  S  +  L+ +L +    
Sbjct: 57  --MVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDS 113

Query: 414 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468
           +       L NL +     EG    ++         G L   + L+   +++   
Sbjct: 114 VLFYAITTLHNLLLH---QEGAKMAVRLA-------GGLQKMVALLNKTNVKFLA 158

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  133 bits (335), Expect = 1e-34
 Identities = 56/340 (16%), Positives = 108/340 (31%), Gaps = 32/340 (9%)

Query: 109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 168
               + L  L ++ +  E            +      +      +    A   L  ++  
Sbjct: 4   HHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQIC-PAVCVLMKLS-- 60

Query: 169 KQEETKAL---LPALPLLIAHL----------GEKSSSPVAEQCAWALGNVAGEGEEFRN 215
             EE +     L  L  +   L           +  S  +      AL N+       + 
Sbjct: 61  FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120

Query: 216 VLLSQ-GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 274
            L S  G +  L   +        +  A  L NL    D      L +V  +  A++   
Sbjct: 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV-KALMECA 179

Query: 275 KRA-DEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATSNS------LQLLI 326
                E     V   +  LSA        +    G L  LV  L   +       ++   
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386
            +LR++ +L+A +      +        +  +  L++ LKS    +   A   L N++A 
Sbjct: 240 GILRNVSSLIATNEDHRQIL------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293

Query: 387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426
           + + ++ +    A+++L +L+ +    I    A  L NL 
Sbjct: 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  117 bits (294), Expect = 4e-29
 Identities = 61/314 (19%), Positives = 112/314 (35%), Gaps = 29/314 (9%)

Query: 170 QEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229
            E  +A  P +     +                L  ++ + EE R+ +   G L  +A +
Sbjct: 24  WEWQEAHEPGMDQDK-NPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAEL 81

Query: 230 M-----------LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD 278
           +                +  R A  AL+NL  G D      L  + G + A++  LK   
Sbjct: 82  LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSES 140

Query: 279 EELTTEVAWVVVYLSALSNVAT-SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 337
           E+L   +A V+  LS  ++V +   L + G ++ L+E          L  VL +L NL +
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL-S 199

Query: 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI---AAGSVEHKQLI 394
              +     +    G    ++  L    ++    + +    +L N+    A + +H+Q++
Sbjct: 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259

Query: 395 HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 454
             +  L  LL  L +    I       L NL       + +  L           G +S 
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--NPKDQEALWDM--------GAVSM 309

Query: 455 FIDLVRSADIEAAR 468
             +L+ S     A 
Sbjct: 310 LKNLIHSKHKMIAM 323

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  116 bits (291), Expect = 8e-29
 Identities = 58/293 (19%), Positives = 109/293 (37%), Gaps = 35/293 (11%)

Query: 135 KAGAIPVLVQCLAFGSPDEQLL----------EAAWCLTNIAAGKQEETKALL---PALP 181
           + G +  + + L        L            A   LTN+  G       L      + 
Sbjct: 71  ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130

Query: 182 LLIAHLGEKSSSP-VAEQCAWALGNVA-GEGEEFRNVLLSQGALPPLARMML-PNKGSTV 238
            L+A L  KS S  + +  A  L N++       +  L   G++  L    L   K ST+
Sbjct: 131 ALVAQL--KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 239 RTAAWALSNL-IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV----AWVVVYLS 293
           ++   AL NL     + K    +  VDG L  ++  L    +  T  +      ++  +S
Sbjct: 189 KSVLSALWNLSAHCTENKAD--ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

Query: 294 ---ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 350
              A +     +L ++  LQ L++    S+SL ++     +L NL A +      +   G
Sbjct: 247 SLIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305

Query: 351 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 403
                  +++L   + S+H+++   +A  L N+ A      +  +     + L
Sbjct: 306 ------AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 113 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD---EQLLEAAWCLTNI---A 166
           + L  L  L +       +     GA+  LV  L + S       +      L N+    
Sbjct: 190 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249

Query: 167 AGKQEETKAL--LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALP 224
           A  ++  + L     L  L+ HL +  S  +       L N++    + +  L   GA+ 
Sbjct: 250 ATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308

Query: 225 PLARMMLPNKGSTVRTAAWALSNLIKG 251
            L  ++          +A AL NL+  
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNLMAN 335

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  119 bits (300), Expect = 3e-31
 Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362
                 L  +V++L  S   Q L   LR L  + +G +  I  V+  G       +  LV
Sbjct: 8   HHHGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAG------ALPALV 60

Query: 363 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 422
           + L S +  + +EA W LSNIA+G  E  Q +  + AL  L+ LLS+    I +E  + L
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 482
            N+               E + +++  G L   + L+ S + +  +  L  +  +  G  
Sbjct: 121 SNIASGG----------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-- 168

Query: 483 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
            +E  + V+    ++ +E+ Q HENE ++  A   ++K  
Sbjct: 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  115 bits (289), Expect = 1e-29
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 17/201 (8%)

Query: 265 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
             L  +++ L   D++        +  +++  N     ++ +G L  LV+ L +S + Q+
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQI 70

Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
           L   L +L N+ +G +  I  V      I    +  LV+ L S +  + +EA W LSNIA
Sbjct: 71  LQEALWALSNIASGGNEQIQAV------IDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 385 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV 444
           +G  E  Q +  + AL  L+ LLS+    I +E  + L N+      G  + + ++E   
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQKQAVKEA-- 179

Query: 445 SLVGRGCLSGFIDLVRSADIE 465
                G L     L    + +
Sbjct: 180 -----GALEKLEQLQSHENEK 195

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  112 bits (282), Expect = 9e-29
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 9/187 (4%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAGK 169
             +ALR+L ++ S      I+  + AGA+P LVQ L   SP+EQ+L+ A W L+NIA+G 
Sbjct: 29  LQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIASGG 85

Query: 170 QEETKALLPA--LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 227
            E+ +A++ A  LP L+  L   +   + ++  WAL N+A  G E    ++  GALP L 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALV 144

Query: 228 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW 287
           +++       ++ A WALSN+  G + +   + +K  G L+ + +     +E++  E   
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQSHENEKIQKEAQE 202

Query: 288 VVVYLSA 294
            +  L +
Sbjct: 203 ALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  105 bits (264), Expect = 3e-26
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 134 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKS 191
                +P +VQ L      ++L  A   L+ IA+G  E+ +A++   ALP L+  L   +
Sbjct: 9   HHGSELPQMVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 251
              + ++  WAL N+A  G E    ++  GALP L +++       ++ A WALSN+  G
Sbjct: 68  EQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 311
            + +   + +   G L A+++ L   +E++  E  W +  +++  N     + ++G L+ 
Sbjct: 127 GNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184

Query: 312 LVERLATSNSLQLLIPVLRSLGNLVA 337
           L + L +  + ++      +L  L +
Sbjct: 185 LEQ-LQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  104 bits (262), Expect = 5e-26
 Identities = 58/248 (23%), Positives = 93/248 (37%), Gaps = 52/248 (20%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 238
            LP ++  L         +     L  +A  G E    ++  GALP L +++       +
Sbjct: 13  ELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 239 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 298
           + A WALSN+  G + +   + +   G L A+++ L   +E++  E  W           
Sbjct: 72  QEALWALSNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWA---------- 119

Query: 299 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358
                                            L N+ +G +  I  V+  G       +
Sbjct: 120 ---------------------------------LSNIASGGNEQIQAVIDAG------AL 140

Query: 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418
             LV+ L S +  + +EA W LSNIA+G  E KQ +  + AL  L  L S     I+KE 
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200

Query: 419 AYVLGNLC 426
              L  L 
Sbjct: 201 QEALEKLQ 208

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  124 bits (312), Expect = 6e-31
 Identities = 61/379 (16%), Positives = 123/379 (32%), Gaps = 33/379 (8%)

Query: 71  SSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKR-VNALRELRRLLSRFEFPP 129
            +D D ++       +   + A   L + +         +R +  L  L ++ +  E   
Sbjct: 81  GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140

Query: 130 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL---LPALPLLIAH 186
                    +      +     + Q+  A   L  ++    EE +     L  L  +   
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPV-EHQICPAVCVLMKLS--FDEEHRHAMNELGGLQAIAEL 197

Query: 187 L----------GEKSSSPVAEQCAWALGNVA-GEGEEFRNVLLSQGALPPLARMMLPNKG 235
           L           +  S  +      AL N+  G+      +   +G +  L   +     
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257

Query: 236 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSA 294
              +  A  L NL    D      L +V  +  A++        E     V   +  LSA
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSV-KALMECALEVKKESTLKSVLSALWNLSA 316

Query: 295 LS-NVATSLLVKSGVLQLLVERLATSNS------LQLLIPVLRSLGNLVAGDSSTISDVL 347
                   +    G L  LV  L   +       ++    +LR++ +L+A +      + 
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376

Query: 348 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 407
                     +  L++ LKS    +   A   L N++A + + ++ +    A+++L +L+
Sbjct: 377 ENN------CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430

Query: 408 STSPFDIKKEVAYVLGNLC 426
            +    I    A  L NL 
Sbjct: 431 HSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  118 bits (298), Expect = 4e-29
 Identities = 75/414 (18%), Positives = 145/414 (35%), Gaps = 68/414 (16%)

Query: 107 AMQKRVNALRELRRLLSRFEFPPIETAL-KAGAIPVLVQCLAFGSPDEQLLE-------- 157
               + +  R L  + S  +      ++ ++G +P+L+Q L     D  LL         
Sbjct: 42  GTHDKDDMSRTLLAMSSSQD---SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98

Query: 158 ---AAWCLTNIAAGKQEETKA-----LLPALPLLIAHLGEK------------------- 190
              A+  L NI   + ++ +      +L  L  + A+                       
Sbjct: 99  RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMP 158

Query: 191 -SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-----------LPNKGSTV 238
                        L  ++ + EE R+ +   G L  +A ++                +  
Sbjct: 159 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217

Query: 239 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 298
           R A  AL+NL  G     A  L  + G + A++  LK   E+L   +A V+  LS  ++V
Sbjct: 218 RYAGMALTNLTFGDVANKA-TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 299 AT-SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357
            +   L + G ++ L+E          L  VL +L NL +   +     +    G    +
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL-SAHCTENKADICAVDGALAFL 335

Query: 358 IAVLVKCLKSEHRVLKKEAAWVLSNI---AAGSVEHKQLIHSSEALALLLHLLSTSPFDI 414
           +  L    ++    + +    +L N+    A + +H+Q++  +  L  LL  L +    I
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395

Query: 415 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468
                  L NL     + +   + + +        G +S   +L+ S     A 
Sbjct: 396 VSNACGTLWNLSARNPKDQ---EALWDM-------GAVSMLKNLIHSKHKMIAM 439

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  111 bits (279), Expect = 1e-26
 Identities = 58/276 (21%), Positives = 103/276 (37%), Gaps = 33/276 (11%)

Query: 135 KAGAIPVLVQCLAFGSPDEQLL----------EAAWCLTNIAAGKQEETKALLP---ALP 181
           + G +  + + L        L            A   LTN+  G       L      + 
Sbjct: 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246

Query: 182 LLIAHLGEKSSSP-VAEQCAWALGNVA-GEGEEFRNVLLSQGALPPLARMML-PNKGSTV 238
            L+A L  KS S  + +  A  L N++       +  L   G++  L    L   K ST+
Sbjct: 247 ALVAQL--KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 239 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA-------WVVVY 291
           ++   AL NL        A ++  VDG L  ++  L    +  T  +          V  
Sbjct: 305 KSVLSALWNLSAHCTENKA-DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363

Query: 292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 351
           L A +     +L ++  LQ L++    S+SL ++     +L NL A +      +   G 
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG- 421

Query: 352 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 387
                 +++L   + S+H+++   +A  L N+ A  
Sbjct: 422 -----AVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  104 bits (259), Expect = 1e-23
 Identities = 63/420 (15%), Positives = 138/420 (32%), Gaps = 60/420 (14%)

Query: 120 RLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET------ 173
             L+       +      +I  L+     G+             N+    +++       
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLY-GVVTTFVNLCNAYEKQEMLPEMI 462

Query: 174 ------KALLP----------------------ALPLLIAHLGEKSSSPVAEQCAWALGN 205
                 K  +P                          L A    +S +   E  A  L  
Sbjct: 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN-SQELIARVLNA 521

Query: 206 VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 265
           V G  +E R  ++ +G +  L RM L       R A  AL+ +    +P+ +    +   
Sbjct: 522 VCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580

Query: 266 LLDAILRHLKRADEEL-TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL 324
           ++  +L  L++    L   E    +  L++++      ++K   +  +       + L L
Sbjct: 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY-YLMEDHLYL 639

Query: 325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
                + L NLV  +       ++      +  +  L    + E        A  L+ I 
Sbjct: 640 TRAAAQCLCNLVMSED------VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693

Query: 385 AGSVEHKQ-LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL 443
           + SV+  + ++  +  L +L  L++     ++     ++ N+  +    E   KL +  +
Sbjct: 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA--GEEIAKKLFETDI 751

Query: 444 VSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ 503
           + L+          L +  D   A+      E+  + +   E  +++ER D  +  + F 
Sbjct: 752 MELL--------SGLGQLPDDTRAKA----REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 89.9 bits (222), Expect = 4e-19
 Identities = 51/444 (11%), Positives = 132/444 (29%), Gaps = 57/444 (12%)

Query: 107 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA 166
                +        L++         AL    + +L +     +   ++  A   L  + 
Sbjct: 300 TTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVR-ALVGLCKLG 358

Query: 167 AGKQEETK-------ALLPALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLL 218
           +   ++         A L         L +      +    A  L  +  + E    ++ 
Sbjct: 359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE 418

Query: 219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA--------------------- 257
            + ++  L  +      S +        NL    + +                       
Sbjct: 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHEL 478

Query: 258 ---------TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 308
                      ++  +G+  A+    K         +A V+  +  L  +    +V+ G 
Sbjct: 479 DDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELR-GKVVQEGG 537

Query: 309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 368
           ++ L+  +A   + +      ++L  +      TI+  +      +  VI  L+  L+ +
Sbjct: 538 VKALLR-MALEGTEKGKRHATQALARI----GITINPEVSFSGQRSLDVIRPLLNLLQQD 592

Query: 369 -HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 427
              +   E+   L+N+A+ +   +Q I   + ++ + + L      + +  A  L NL +
Sbjct: 593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652

Query: 428 SPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT 487
           S    +        +         +     L    D E A      + ++          
Sbjct: 653 SE---DVIKMFEGNN-------DRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-E 701

Query: 488 KLVEREDGIDAMERFQFHENEDLR 511
           K++     +D +     + +  ++
Sbjct: 702 KILAIASWLDILHTLIANPSPAVQ 725

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 82.6 bits (203), Expect = 1e-16
 Identities = 56/443 (12%), Positives = 121/443 (27%), Gaps = 51/443 (11%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
              A   L R+     +   +          +   L     + ++      +T +  G  
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKV-RVTVAITALLNGPL 279

Query: 171 EETKALLP---ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 227
           +    ++     L +++A +               L   A   ++    L  QG +  L 
Sbjct: 280 DVGNQVVAREGILQMILA-MATTDDELQQRVACECLIA-ASSKKDKAKALCEQG-VDILK 336

Query: 228 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA------DEEL 281
           R+           A   L  L        A      DG    +    +R       D+++
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIR-PFGDGAALKLAEACRRFLIKPGKDKDI 395

Query: 282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 341
               A  + YL+  +     L+     +  L++ LA   +   L  V+ +  NL      
Sbjct: 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMD-LARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 342 -----------TISDVLVPGHG---------------ITDQVIAVLVKCLKSEHRVLKKE 375
                        +   +P                    + +   L    K+E    ++ 
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK 435
            A VL+ +  G  E +  +     +  LL +        K+     L  + ++       
Sbjct: 515 IARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573

Query: 436 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDG 495
                  ++  +          L     + A         L      N    + + +E G
Sbjct: 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMA---------LTNLASMNESVRQRIIKEQG 624

Query: 496 IDAMERFQFHENEDLRNMANGLV 518
           +  +E +   ++  L   A   +
Sbjct: 625 VSKIEYYLMEDHLYLTRAAAQCL 647

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 96.9 bits (240), Expect = 2e-21
 Identities = 64/400 (16%), Positives = 128/400 (32%), Gaps = 23/400 (5%)

Query: 93  VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD 152
           + E   +  Y+     Q    +L  L  L       P     +   +P ++  L F    
Sbjct: 7   IGEEVPSDQYYWAPLAQHERGSLASLDSLRKG---GPPPPNWRQPELPEVIAMLGFRLDA 63

Query: 153 EQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVA-GE 209
            +   AA  L ++     +    +     +P+L+  L +     V      AL N++ G 
Sbjct: 64  VK-SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGR 121

Query: 210 GEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 268
            ++ +  + +   +P L R++               L NL      K       +  L D
Sbjct: 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTD 181

Query: 269 AILRHLKRADEELTTEV-AWVVVYLSALSNVATSLLVKSGVLQ-LLVERLATSNSLQLLI 326
            ++      + E   +     + + S L+N A  L   S        +       +  LI
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241

Query: 327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 386
            ++++       DS  + + +     ++ Q     V     +    ++ A  V +N    
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQ-----VHREIPQAERYQEAAPNVANNTGTS 296

Query: 387 SVEHKQLIHSSEALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 445
                +L+   E + + + LL  S    I +  A  + NLC          + I+  L  
Sbjct: 297 PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQ 353

Query: 446 LVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE 485
                 LS   DL+ +      +     +  +     N E
Sbjct: 354 ---EKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE 390

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 69.6 bits (169), Expect = 9e-13
 Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 41/346 (11%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
            + A   L+ +    +            +P LV+ L      +        L N+++   
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166

Query: 171 EETKALLPALPLLIAHLGEKSSSP-----------------VAEQCAWALGNVAGEGEEF 213
            + + +  AL  L   +    S                   V    A  L NV+ E  E 
Sbjct: 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226

Query: 214 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH 273
           R  L     L      ++  +                  D K     + +   L   +  
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKD------------SDSKLVENCVCLLRNLSYQVHR 274

Query: 274 LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 333
                E        V             LL +  V+++ +  L  S +  +L     ++ 
Sbjct: 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334

Query: 334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 393
           NL AG  +      +      ++ ++ +   L +EH  + K A+  L N+A  +  +K+L
Sbjct: 335 NLCAGRWTY--GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKEL 391

Query: 394 IHSSEALALLLHLLSTSP--------FDIKKEVAYVLGNLCVSPTE 431
           I    A+  L+  L             D    +   +  +     E
Sbjct: 392 I-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 11/183 (6%)

Query: 150 SPDEQLLEAAWCLTNIAAGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNV 206
              E+  EAA  + N           LL     + + I+ L E  +  + E  A A+ N+
Sbjct: 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL 336

Query: 207 A----GEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 262
                  G   R+ L  + AL  +A ++       V+ A+ AL NL      K       
Sbjct: 337 CAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHA 396

Query: 263 VDGLLDAIL----RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 318
           +  L+  +            E+    +   +  + A +  A   L ++  ++ LV    +
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 319 SNS 321
            N 
Sbjct: 457 GNR 459

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 89.5 bits (221), Expect = 3e-19
 Identities = 59/420 (14%), Positives = 127/420 (30%), Gaps = 45/420 (10%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 170
           +      ++    + E    +   + G I  LV  L   + + Q   AA  L N+     
Sbjct: 19  QAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQ-QAAAGALRNLVFRST 76

Query: 171 EETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 228
                      +   ++ L    ++ + +Q    L N++   E      L   ALP LA 
Sbjct: 77  TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPVLAD 134

Query: 229 MML----------------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 272
            ++                         A   L NL      +    +    GL+D+++ 
Sbjct: 135 RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT--MRNYSGLIDSLMA 192

Query: 273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI---PVL 329
           +++        +   V   +  L N++  L  +       +E  A +   +         
Sbjct: 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252

Query: 330 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-----KSEHRVLKKEAAWVLSNIA 384
           +S   +       + +      G      +  ++       KS+     +  A  L N+ 
Sbjct: 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312

Query: 385 AG-----SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 439
           A      S   + +    + L  +  LL +   D+ +  A +L N+   P       +++
Sbjct: 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP----LLHRVM 368

Query: 440 QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 499
              +   V R   S   +   S DI ++        +        +  K       ++ +
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYT----VRNLMASQPQLAKQYFSSSMLNNI 424

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.9 bits (209), Expect = 1e-17
 Identities = 53/354 (14%), Positives = 108/354 (30%), Gaps = 32/354 (9%)

Query: 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL--LPALPLLIAHLGEKSSSPVA 196
           IP  VQ L+      Q    A+ + +     +   + +  L  +  L+  L    +  V 
Sbjct: 4   IPKAVQYLSSQDEKYQA-IGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQ 61

Query: 197 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV-RTAAWALSNLIKGPDPK 255
           +  A AL N+       +     Q  +     ++     + + +     L NL    + K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 256 PATE-----------LIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLL 303
                          +I   G  D      +   D E+       +  LS+      ++ 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 304 VKSGVLQLLVERLATSN--------SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 355
             SG++  L+  +            S++  + VL +L   +  +  T    L        
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 415
              +          +++       L      + +    ++ S+A+   L+L+  S  D  
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEE-ETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 416 KE-VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 468
            E  A  L NL  S               +  +    L     L++S + +  R
Sbjct: 301 LEACAGALQNLTAS-----KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVR 349

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 69.9 bits (170), Expect = 5e-13
 Identities = 50/363 (13%), Positives = 115/363 (31%), Gaps = 33/363 (9%)

Query: 178 PALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 236
             +P  + +L   S         A+ + +   + E  +  +   G +  L  ++     +
Sbjct: 2   LTIPKAVQYL--SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQN 59

Query: 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS--- 293
             + AA AL NL+         E  + +G+ +A+    +  + E+  ++  ++  LS   
Sbjct: 60  VQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 294 ---------ALSNVATSLLV-KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343
                    AL  +A  +++  SG               ++       L NL + D+   
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 344 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 403
           +     G      +I  L+  +++     + +   V + +        +L          
Sbjct: 179 TMRNYSG------LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 404 LHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ-----EHLVSLVGRGCLSGFIDL 458
           L   + +    +K       N             L +     +    L     +  +++L
Sbjct: 233 LEYNARNA-YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291

Query: 459 VRSAD----IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 514
           +  +     +EA    LQ +      M +     +  +E G+  + R     N D+    
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351

Query: 515 NGL 517
             L
Sbjct: 352 ASL 354

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.8 bits (162), Expect = 5e-12
 Identities = 56/390 (14%), Positives = 116/390 (29%), Gaps = 55/390 (14%)

Query: 78  VDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAG 137
                + LE +  + + E  S +   G   +QK       L  L S  E       L A 
Sbjct: 73  FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK--QLTGLLWNLSSTDELKE---ELIAD 127

Query: 138 AIPVLVQCL--------------AFGSPDEQLLE-AAWCLTNIAAGKQE-----ETKALL 177
           A+PVL   +              +    D ++   A  CL N+++             L+
Sbjct: 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLI 187

Query: 178 PALPLLIAH--LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG 235
            +L   + +     +      E C   L N++   +        Q            +  
Sbjct: 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247

Query: 236 STVRTAAWALSN------LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 289
                 +  + N      L +       +  +     +   L  + ++ ++ T E     
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA 307

Query: 290 VYLSALSN------VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 343
           +     S       ++  + +K   L  +   L  S +  ++      L N+        
Sbjct: 308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHR 366

Query: 344 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKK------EAAWVLSNIAAGSVEHKQLIHSS 397
                    + +QV   + + L S              A + + N+ A   +  +   SS
Sbjct: 367 V--------MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418

Query: 398 EALALLLHLLSTSPFDIKKEVA-YVLGNLC 426
             L  +++L  +S      E A  +L ++ 
Sbjct: 419 SMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 39/282 (13%), Positives = 82/282 (29%), Gaps = 36/282 (12%)

Query: 136 AGAIPVLVQCLAFGSPDEQ-----LLEAAWCLTNIAAGKQEETKALLPALPLL------- 183
           +G I  L+  +       +     +      L N++     E       L          
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 184 ---IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRT 240
                    KS   +       L       +    +  S      L  M    K +T+  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 241 AAWALSNLIKGPDPKPATE---LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297
            A AL NL        +     +   +  L  I R L+  + ++    A ++  +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 298 VATSLLVKSGVLQLLVERLATSN-----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 352
                ++ + V   +   L +       S  +L     ++ NL+A               
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS-- 419

Query: 353 ITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQL 393
               ++  ++   +S       + A  +LS++ +     K+L
Sbjct: 420 ----MLNNIINLCRSSASPKAAEAARLLLSDMWS----SKEL 453

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 83.9 bits (207), Expect = 5e-18
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 202 ALGNVAGEGEEFRNVL--LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 259
            +    GE E+ ++ L  LSQ   P                A   L++L +  D   A +
Sbjct: 19  HMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN--AAD 76

Query: 260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS 319
             ++ G+   + R+L+     L    A ++   S         ++  G L+ L+  L   
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136

Query: 320 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 379
               + +  L ++  LV    + +   L           +VL++ ++ + + LK ++A++
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLD------GFSVLMRAMQQQVQKLKVKSAFL 190

Query: 380 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426
           L N+  G  EHK  + S   +  L+ L+ T      + V   L +L 
Sbjct: 191 LQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 78.9 bits (194), Expect = 2e-16
 Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 14/251 (5%)

Query: 79  DEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETA---LK 135
            E + +       +     +A         Q+R  AL  L  L        ++ A    +
Sbjct: 25  GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-----NMDNAADFCQ 79

Query: 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSS 193
              + +LV              AA  +   +       + +L   AL  L+  L   +  
Sbjct: 80  LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD 139

Query: 194 PVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 253
            V  +  +A+  +  E E      L       L R M          +A+ L NL+ G  
Sbjct: 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 199

Query: 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQL 311
               T  +   G++  ++  ++         V   +  L            +  +   +L
Sbjct: 200 EHKGT--LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 257

Query: 312 LVERLATSNSL 322
           L  R       
Sbjct: 258 LRHRCQLLQQH 268

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 362
             +   + LLV R   + +  L     + +G      ++    VL  G       +  L+
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG------ALRKLL 130

Query: 363 KCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 421
           + L  +    ++ +A + +S +              +  ++L+  +      +K + A++
Sbjct: 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190

Query: 422 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 481
           L NL V             EH  +L   G +   + LVR+         L  +  ++   
Sbjct: 191 LQNLLVGHP----------EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240

Query: 482 PN------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 524
           P            L E       + +    E ++       L+   F  
Sbjct: 241 PQGVRECREPELGLEELLRHRCQLLQQH-EEYQEELEFCEKLLQTCFSS 288

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 20/202 (9%)

Query: 136 AGAIPVLVQCLAFGSPDEQLL-EAAWCLTNIAAGKQEETKAL--LPALPLLIAHLGEKSS 192
              +   V  L         +  AA  + +    K E  K +  L  +  L+  L  K  
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL--KVQ 64

Query: 193 SP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV-RTAAWALSNLIK 250
           +  V      AL N+  E  + +  +     +P L +++   +     +     L NL  
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 251 GPDPKPATELIKVDGLLDAIL------------RHLKRADEELTTEVAWVVVYLSALSNV 298
               K       +  L + I+            +     D ++   V   +  +S+    
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 299 ATSLLVK-SGVLQLLVERLATS 319
               + +  G++  LV  +  +
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGT 206

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.0 bits (171), Expect = 8e-14
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 28/231 (12%)

Query: 85  LEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ 144
           +EM    AV  L++           +   A   ++      +    +   +   I  L+Q
Sbjct: 6   MEMTLERAVSMLEA-----DHMLPSRISAAATFIQ-HECFQKSEARKRVNQLRGILKLLQ 59

Query: 145 CLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWA 202
            L   + D Q       L N+     +    +     +P L+  L +       +Q    
Sbjct: 60  LLKVQNEDVQ-RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGL 118

Query: 203 LGNVAGEGEEFRNVLLSQGALPPLARMMLP----------------NKGSTVRTAAWALS 246
           L N++   +     L+   AL  L   ++                             L 
Sbjct: 119 LWNLSSNDK--LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLR 176

Query: 247 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297
           N+           + + DGL+D+++ +++    +   +       +  L N
Sbjct: 177 NMSSAGADGR-KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 309 LQLLVERL-ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 367
           L+  V  L A       +      + +     S     V         + I  L++ LK 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRV------NQLRGILKLLQLLKV 63

Query: 368 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP-FDIKKEVAYVLGNLC 426
           ++  +++     L N+     ++K  +     +  LL +L  +   + KK++  +L NL 
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 427 VSPTEGEGKPKLIQEHLVSLV 447
            +    + K  +I E L++L 
Sbjct: 124 SND---KLKNLMITEALLTLT 141

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 28/252 (11%), Positives = 79/252 (31%), Gaps = 38/252 (15%)

Query: 178 PALPLLIAHLGEKSSSP-VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 236
             L   ++ L      P      A  + +   +  E R  +     +  L +++      
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 237 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 296
             R    AL NL+   +       +     +  +L+ LK+  +  T +    +++  + +
Sbjct: 68  VQRAVCGALRNLVFEDNDN--KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 297 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 356
           +   +L++   +L L                                 ++++P  G  + 
Sbjct: 126 DKLKNLMITEALLTL-------------------------------TENIIIPFSGWPE- 153

Query: 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-ALALLLHLLSTSPFDIK 415
                 K        +       L N+++   + ++ +   +  +  L+H +  +  D +
Sbjct: 154 --GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211

Query: 416 KEVAYVLGNLCV 427
            +       +C+
Sbjct: 212 PDDKATENCVCI 223

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 22/137 (16%)

Query: 134 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL------ 187
            +   +P L+Q L      E   +    L N+++  + +   +  AL  L  ++      
Sbjct: 91  AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSG 150

Query: 188 ---------GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGS- 236
                           +       L N++  G + R  +    G +  L   +       
Sbjct: 151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY 210

Query: 237 -----TVRTAAWALSNL 248
                        L NL
Sbjct: 211 QPDDKATENCVCILHNL 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 79/496 (15%), Positives = 143/496 (28%), Gaps = 174/496 (35%)

Query: 117 ELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET--- 173
             + +LS+ E   I               +         L   W L +    KQEE    
Sbjct: 41  MPKSILSKEEIDHI---------------IMSKDAVSGTLRLFWTLLS----KQEEMVQK 81

Query: 174 ---KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 230
              + L      L++ +  +   P      +          E R+ L +       A+  
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY---------IEQRDRLYNDN--QVFAKYN 130

Query: 231 LP--NKGSTVRTAAWALSNLIKGPDPKPATELIKVDG--------LLDAILRHLKRADEE 280
           +        +R A   L  L      +PA  ++ +DG        +   +    K    +
Sbjct: 131 VSRLQPYLKLRQA---LLEL------RPAKNVL-IDGVLGSGKTWVALDVCLSYKV-QCK 179

Query: 281 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS---------------NSLQLL 325
           +  ++ W+ +      N   ++L     LQ L+ ++  +               +S+Q  
Sbjct: 180 MDFKIFWLNL---KNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 326 IPVL-------RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL----KK 374
           +  L         L  LV      + +V            A  + C     ++L     K
Sbjct: 234 LRRLLKSKPYENCL--LV------LLNVQNAKA-----WNAFNLSC-----KILLTTRFK 275

Query: 375 EAAWVLSNIAAGSVEHKQLIHSS------EALALLLHLLSTSPFDIKKEVAYVLGNLCVS 428
           +   V   ++A +  H  L H S      E  +LLL  L   P D+ +EV      L  +
Sbjct: 276 Q---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV------LTTN 326

Query: 429 P----------------------TEGEGKPKLIQ---EHLVSLVGRGCLSGFIDLV---R 460
           P                         +    +I+     L     R     F  L     
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSVFPP 383

Query: 461 SADIEAARLGL-------QFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-------- 505
           SA I    L L         + +V+  +  +    LVE++                    
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQ---PKESTISIPSIYLELKV 437

Query: 506 ENEDLRNMANGLVDKY 521
           + E+   +   +VD Y
Sbjct: 438 KLENEYALHRSIVDHY 453

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 78/537 (14%), Positives = 165/537 (30%), Gaps = 154/537 (28%)

Query: 28  FLVGNVAAQRRRQNAVTVG-KERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILE 86
           FL+  +  ++R+ + +T    E+R+      RL       D +V +     V   Q  L+
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRD------RLYN-----DNQVFAK--YNVSRLQPYLK 139

Query: 87  MQTSSAVEELKSA--VAYHGKGAMQKRVNALRELR--RLLSRFEFPPIETALKAGAIPVL 142
           ++   A+ EL+ A  V   G     K   AL      ++  + +F               
Sbjct: 140 LRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-------------- 183

Query: 143 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWA 202
                F           W    +        + +L  L  L+  +    +S         
Sbjct: 184 ----IF-----------W----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--- 221

Query: 203 LGNVAGEGEEFRNVLLSQGALPPLARMML-------P------NKGST--VRTAAWALSN 247
             N+       +  L       P    +L              N      + T    +++
Sbjct: 222 --NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 248 LIKGPDPKPATELIKVDGL-----LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL 302
            +        +       L        +L++L    ++L  EV  +      LS +A S+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAESI 337

Query: 303 LVKSGV------LQLLVERLAT--SNSLQLLIPV-LRSLGNLVAGDSSTI--SDVLVP-- 349
             + G+        +  ++L T   +SL +L P   R + + ++     +      +P  
Sbjct: 338 --RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTI 390

Query: 350 ------GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 403
                    I   V+ V+ K  K    +++K+             E    I S       
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPK-----------ESTISIPS------- 430

Query: 404 LHLLSTSPFDIKKEV------AYVLGNLCVSPTEGEGKPKL-------IQEHLVSLVGRG 450
           ++L      + +  +       Y +       ++    P L       I  HL ++    
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN 507
            ++ F  +          L  +F+E  +R    H+ T        ++ +++ +F++ 
Sbjct: 489 RMTLFRMVF---------LDFRFLEQKIR----HDSTAWNASGSILNTLQQLKFYKP 532

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 38/271 (14%), Positives = 90/271 (33%), Gaps = 26/271 (9%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML---PNKG 235
            +  L   +   S +   +Q    + N+    + F   L  QGA+  +   +        
Sbjct: 458 LISFLKREMHNLSPN-CKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGE 515

Query: 236 STVRTAAWALSNLIKGPDPKPATE----------LIKVDGLLDAILRHLKRADEELTT-- 283
                   AL+ ++   +P    +          L ++      +  +    DE++    
Sbjct: 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575

Query: 284 --EVAWVVVYLSALSNVATSLLVKSGVLQL----LVERLATSNSLQLLIPVLRSLGNLVA 337
             E    +  L++        + K  V        +E L    ++ L    L  + N+++
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIHS 396
              +  +      +  + +   +LVK L+      ++  A + +NIA       K+L+  
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 397 SEALALLLHLLSTSPFDIKKE--VAYVLGNL 425
            E +   + + +    DI+    +  +   L
Sbjct: 696 KELIENAIQVFADQIDDIELRQRLLMLFFGL 726

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 49/350 (14%), Positives = 106/350 (30%), Gaps = 41/350 (11%)

Query: 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQ 198
           IP  +Q     SP  +   A  C+          T+AL+  +   I +L   +     E 
Sbjct: 176 IPKFLQFFKHSSPKIRSH-AVACVNQFI---ISRTQALMLHIDSFIENLFALAGDEEPEV 231

Query: 199 CAWALGNVAGEGEEFRNVLLSQGALPPLARMML---PNKGSTVRTAAWALSNLIKGPDPK 255
                  +    E   + LL    +  +   ML    ++   V   A      +      
Sbjct: 232 RKNVCRALVMLLEVRMDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289

Query: 256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVV--------VYLSALSNVATSLL---- 303
               +  +  L+  ++  +K +D ++      V         +    L   + + L    
Sbjct: 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349

Query: 304 --VKSGVLQLL---VERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358
              +  +L  +   ++ L   +   +    +  LG +  G    +   L        ++I
Sbjct: 350 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-------PELI 402

Query: 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418
             L++CL  +  +++    W LS  A   V      +    +  LL  +  S   +++  
Sbjct: 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462

Query: 419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEA 466
                 L       E     +  +L  ++       S +         +A
Sbjct: 463 CSAFATLE------EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 506

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 67/248 (27%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 238
            + + I +L +  S  V    A+ALG +  E            A+ PL +  L ++ + V
Sbjct: 20  KVEMYIKNLQD-DSYYVRRAAAYALGKIGDER-----------AVEPLIKA-LKDEDAWV 66

Query: 239 R-TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297
           R  AA AL               I  +  ++ +++ LK  D  +    A       AL  
Sbjct: 67  RRAAADALGQ-------------IGDERAVEPLIKALKDEDGWVRQSAAV------ALGQ 107

Query: 298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357
           +          ++ L++ L   +   + I    +LG +  GD               ++ 
Sbjct: 108 IGDE-----RAVEPLIKALKDEDW-FVRIAAAFALGEI--GD---------------ERA 144

Query: 358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417
           +  L+K LK E   +++ AA  L  I                 A +  L  T     +K 
Sbjct: 145 VEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKV 193

Query: 418 VAYVLGNL 425
               L   
Sbjct: 194 AVNYLETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 65/247 (26%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 238
            + + I +L +  S  V    A+ALG +  E            A+ PL + +        
Sbjct: 15  KVEMYIKNLQD-DSYYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVR 62

Query: 239 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 298
           R AA AL               I  +  ++ +++ LK  D  +    A       AL  +
Sbjct: 63  RAAADALGQ-------------IGDERAVEPLIKALKDEDGWVRQSAAV------ALGQI 103

Query: 299 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358
                     ++ L++ L   +   + I    +LG +  GD               ++ +
Sbjct: 104 GDE-----RAVEPLIKALKDEDW-FVRIAAAFALGEI--GD---------------ERAV 140

Query: 359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 418
             L+K LK E   +++ AA  L             I      A +  L  T     +K  
Sbjct: 141 EPLIKALKDEDGWVRQSAADALGE-----------IGGERVRAAMEKLAETGTGFARKVA 189

Query: 419 AYVLGNL 425
              L   
Sbjct: 190 VNYLETH 196

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 29/270 (10%), Positives = 67/270 (24%), Gaps = 60/270 (22%)

Query: 157 EAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 216
           +A+         K+     L   L        +  +S      A  L    G+       
Sbjct: 9   KASKEYGLYNQCKKLNDDELFRLL--------DDHNSLKRISSARVLQLRGGQ------- 53

Query: 217 LLSQGALPPLARMMLPNKGSTVR-TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 275
                A+         +K    R   A+ L  +      +        + L +  L    
Sbjct: 54  ----DAVRLAIE-FCSDKNYIRRDIGAFILGQIKICKKCEDNV----FNILNNMALND-- 102

Query: 276 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335
                +            + +       + S  +    +  A   S  +      ++  +
Sbjct: 103 -KSACVRATAIE------STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155

Query: 336 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH 395
              D                  I +L+  LK  +  ++  AA+ ++              
Sbjct: 156 --ND---------------KATIPLLINLLKDPNGDVRNWAAFAININKYD--------- 189

Query: 396 SSEALALLLHLLSTSPFDIKKEVAYVLGNL 425
           +S+     + +L     +++ E    L   
Sbjct: 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 36/316 (11%), Positives = 85/316 (26%), Gaps = 80/316 (25%)

Query: 111 RVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL-LEAAWCLTNIAAGK 169
           R+++ R L+                  A+ + ++       +       A+ L  I   K
Sbjct: 40  RISSARVLQLRGG------------QDAVRLAIEFC--SDKNYIRRDIGAFILGQIKICK 85

Query: 170 QEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM 229
           + E         +L        S+ V      +      +        +    +   +++
Sbjct: 86  KCEDNVF----NILNNMALNDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQI 135

Query: 230 MLPNKGSTVR-TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 288
              +K + VR   A+A+S              I     +  ++  LK  + ++    A+ 
Sbjct: 136 TAFDKSTNVRRATAFAISV-------------INDKATIPLLINLLKDPNGDVRNWAAFA 182

Query: 289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 348
           +      ++      V+          +    + ++ I  +  L      D         
Sbjct: 183 ININKYDNSDIRDCFVE----------MLQDKNEEVRIEAIIGLSYR--KD--------- 221

Query: 349 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 408
                  +V++VL   LK     +  +       +                L +L  +L 
Sbjct: 222 ------KRVLSVLCDELKKNT--VYDDIIEAAGELG-----------DKTLLPVLDTMLY 262

Query: 409 TSP-FDIKKEVAYVLG 423
                +I       L 
Sbjct: 263 KFDDNEIITSAIDKLK 278

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 38/271 (14%), Positives = 85/271 (31%), Gaps = 36/271 (13%)

Query: 115 LRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAW-CLTNIAAGKQEET 173
           +RE        E   I        +  L++ L        +++ A   +  IA   +   
Sbjct: 10  IREALANGEHLEKILIMAKYDESVLKKLIELL--DDDLWTVVKNAISIIMVIA---KTRE 64

Query: 174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN 233
               P L  L + L +  + P+ ++ A A G +A E  E     L +  +P L       
Sbjct: 65  DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIG 119

Query: 234 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293
              T    ++AL  + K            +  ++   +  L   + E           + 
Sbjct: 120 DEKTKINVSYALEEIAKANPM-------LMASIVRDFMSMLSSKNREDKLTALNF---IE 169

Query: 294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI 353
           A+   +   +  +  L  ++  L   +   +    + +L +L   +              
Sbjct: 170 AMGENSFKYV--NPFLPRIINLLHDGDE-IVRASAVEALVHLATLNDKLR---------- 216

Query: 354 TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 384
             +V+   ++ L     ++ K     +S + 
Sbjct: 217 --KVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 33/248 (13%), Positives = 88/248 (35%), Gaps = 37/248 (14%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 238
            L  LI  L +   + V +     +  +A   E+     L +  L  L  ++  ++   +
Sbjct: 33  VLKKLIELLDDDLWT-VVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPL 86

Query: 239 R-TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 297
               A A   + K   P+       V  ++  +  + +  DE+    V++ +  ++  + 
Sbjct: 87  TQEIAKAFGQMAKE-KPE------LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP 139

Query: 298 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 357
           +  + +V+          + +S + +  +  L  +  +       ++  L          
Sbjct: 140 MLMASIVRD------FMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL---------- 183

Query: 358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 417
              ++  L     +++  A   L ++A  + + ++++     +  L  L  TS   + K 
Sbjct: 184 -PRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV-----IKRLEELNDTSSL-VNKT 236

Query: 418 VAYVLGNL 425
           V   +  L
Sbjct: 237 VKEGISRL 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.72
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.72
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.71
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
3grl_A	651	General vesicular transport factor P115; vesicle t	99.59
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.59
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.57
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.57
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.55
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.55
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.52
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.5
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.49
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.48
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.46
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.46
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.42
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.3
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.27
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.23
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.99
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.97
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.92
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.76
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.65
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.63
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.6
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.58
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.55
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.55
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.51
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.45
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.38
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.37
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.35
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.17
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.17
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.16
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.07
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.96
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.87
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.87
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.83
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.77
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.65
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.64
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.64
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.6
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.53
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.26
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.99
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.95
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.92
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.85
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.71
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.68
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.48
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.22
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.99
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.98
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.73
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.53
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.47
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.16
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.99
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.96
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.56
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.44
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.38
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.21
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.97
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.22
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.96
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.72
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.36
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.14
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.79
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.47
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	89.03
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	89.03
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	88.82
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	88.42
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	88.42
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	85.92
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	83.54
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	82.53
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	80.46

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.4e-74  Score=618.03  Aligned_cols=475  Identities=28%  Similarity=0.493  Sum_probs=385.8

Q ss_pred             HHh-hhcCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHh
Q 009647           25 VIW-FLVGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAY  102 (530)
Q Consensus        25 ~~~-~~~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  102 (530)
                      .|| |+.|+++.|||| |++++|||+||||+|.|||+.  ....++..++..     +... ........++++++   +
T Consensus        16 ~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~--~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~lv~---~   84 (529)
T 3tpo_A           16 RFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNV--SSFPDDATSPLQ-----ENRN-NQGTVNWSVEDIVK---G   84 (529)
T ss_dssp             ----------------------------CCSCSCCCCC--C---------------------CGGGSSCCHHHHHH---H
T ss_pred             HhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCC--CCCcccccChhh-----hccc-hhhhHHHHHHHHHH---H
Confidence            799 899987766666 799999999999999888853  212222111110     1000 01112223455555   4


Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PAL  180 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v  180 (530)
                      ++|+|++.++.|+..+|++||.+.+||++.++++|+||.||++|..++++.+|++|+|+|+|+++++++++..++  |+|
T Consensus        85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai  164 (529)
T 3tpo_A           85 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI  164 (529)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            569999999999999999999999999999999999999999998777788999999999999999999998888  899


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-----hhHHHHHHHHHHHhhcCCCCC
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAAWALSNLIKGPDPK  255 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nL~~~~~~~  255 (530)
                      |.|+.+|.+ ++++++++|+|+|+||+.+++++|+.+++.|++++|+.+|..++     ..+.++++|+|+++|+++.+.
T Consensus       165 p~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~  243 (529)
T 3tpo_A          165 PAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA  243 (529)
T ss_dssp             HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence            999999988 78999999999999999999999999999999999999998653     467899999999999987555


Q ss_pred             chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhh
Q 009647          256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL  335 (530)
Q Consensus       256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl  335 (530)
                      ....  ...+++|.|++++.+++++++.++||+|+|++.++++..+.+++.|+++.|+.+| .+++..++.+++++|+|+
T Consensus       244 ~~~~--~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          244 PPLD--AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNI  320 (529)
T ss_dssp             CCHH--HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHH
T ss_pred             hhHH--HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHH
Confidence            4333  3569999999999999999999999999999998888899999999999999999 588999999999999999


Q ss_pred             hcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHH
Q 009647          336 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK  415 (530)
Q Consensus       336 ~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~  415 (530)
                      +++++.+++.+++.      |+++.|+.+|.++++.++++|||+|+||+++++.+++.+++.|++|.|+.+|.+++++++
T Consensus       321 ~~~~~~~~~~i~~~------g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          321 VTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             TTSCHHHHHHHHHT------TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HccchHHHHHHhhc------ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99999998888864      699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC----CcchhHHH
Q 009647          416 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN----HEGTKLVE  491 (530)
Q Consensus       416 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~----~~~~~~i~  491 (530)
                      ++|+|+|+|++.++     +    .+++.+|++.|+|++|+++|.++|++++..+|++|.+|++.++.    +.++.+|+
T Consensus       395 ~~A~~aL~nl~~~~-----~----~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie  465 (529)
T 3tpo_A          395 KAAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE  465 (529)
T ss_dssp             HHHHHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-----C----HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH
Confidence            99999999998753     2    47889999999999999999999999999999999999976532    24567899


Q ss_pred             HhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCC
Q 009647          492 REDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD  529 (530)
Q Consensus       492 ~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~  529 (530)
                      ++||+++|+.||+|+|++||++|..||++||++||+++
T Consensus       466 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~  503 (529)
T 3tpo_A          466 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEED  503 (529)
T ss_dssp             HTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-------
T ss_pred             HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            99999999999999999999999999999999877665

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.2e-67  Score=558.18  Aligned_cols=459  Identities=29%  Similarity=0.497  Sum_probs=380.5

Q ss_pred             HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009647           40 QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELR  119 (530)
Q Consensus        40 ~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr  119 (530)
                      .-.+++|+++++++....+..  ...+++.       ...+..+ ......++++++++.+   +|+|++.|++|+..+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~-~~~~~~~~i~~~v~~l---~s~d~~~q~~a~~~~r   82 (510)
T 3ul1_B           16 SGMLETAAALFERNHMDSPDL--GTDDDDL-------AMADIGS-NQGTVNWSVEDIVKGI---NSNNLESQLQATQAAR   82 (510)
T ss_dssp             -----------------------------------------------CCSSCCHHHHHHHH---TSSCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhhccCCccc--cCCcccc-------chhhhcc-ccchhhhhHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence            456677888877777655531  1111110       0011111 1222445678877766   5999999999999999


Q ss_pred             HHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHH
Q 009647          120 RLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAE  197 (530)
Q Consensus       120 ~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~  197 (530)
                      ++||.+.+||++.++++|+||+||++|+..+.+.+|++|+|+|+|||+++++++..++  |+||.|+.+|.+ +++++++
T Consensus        83 klls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e  161 (510)
T 3ul1_B           83 KLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISE  161 (510)
T ss_dssp             HHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHH
T ss_pred             HHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHH
Confidence            9999999999999999999999999999877788999999999999999999999998  799999999988 8899999


Q ss_pred             HHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-----hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 009647          198 QCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR  272 (530)
Q Consensus       198 ~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~  272 (530)
                      +|+|+|+||+.+++.+|+.+++.|++++|+.++.+++     ..++++++|+++|+++++.+....  ....+++|.|++
T Consensus       162 ~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--~~~~~~lp~L~~  239 (510)
T 3ul1_B          162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--DAVEQILPTLVR  239 (510)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--HHHHhHHHHHHH
Confidence            9999999999999999999999999999999998654     467899999999999987555433  335699999999


Q ss_pred             HhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647          273 HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG  352 (530)
Q Consensus       273 lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~  352 (530)
                      ++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+| .+++..++.+++++|+|++++++.+++.+++.   
T Consensus       240 LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~---  315 (510)
T 3ul1_B          240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDA---  315 (510)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhc---
Confidence            99999999999999999999998888889999999999999999 58889999999999999999999999888864   


Q ss_pred             cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 009647          353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG  432 (530)
Q Consensus       353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~  432 (530)
                         |+++.|+.+|.++++.++++|+|+|+||+++++.+++.+++.|++|.|+.+|.+++++++++|+|+|+|++.+.   
T Consensus       316 ---g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~---  389 (510)
T 3ul1_B          316 ---GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG---  389 (510)
T ss_dssp             ---TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---
T ss_pred             ---cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC---
Confidence               69999999999999999999999999999999999999999999999999999999999999999999998753   


Q ss_pred             CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC----CcchhHHHHhchHHHHHHHhcCCcH
Q 009647          433 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN----HEGTKLVEREDGIDAMERFQFHENE  508 (530)
Q Consensus       433 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~----~~~~~~i~~~ggl~~L~~L~~~~~~  508 (530)
                        +    .+++.+|++.|++++|+++|.++|++++..+|++|.+|++.++.    +.++.+|+++||+++|+.||+|+|+
T Consensus       390 --~----~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~  463 (510)
T 3ul1_B          390 --T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE  463 (510)
T ss_dssp             --C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred             --C----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCH
Confidence              2    47889999999999999999999999999999999999986532    3456789999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCC
Q 009647          509 DLRNMANGLVDKYFGEDYGLDE  530 (530)
Q Consensus       509 ~i~~~A~~il~~~f~~~~~~~~  530 (530)
                      +||++|..||++||++||++|+
T Consensus       464 ~i~~~A~~iie~yf~~~~~~~~  485 (510)
T 3ul1_B          464 SVYKASLNLIEKYFSVEEEEDQ  485 (510)
T ss_dssp             HHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHCCCcccccc
Confidence            9999999999999998877653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.1e-61  Score=518.83  Aligned_cols=473  Identities=32%  Similarity=0.510  Sum_probs=377.7

Q ss_pred             HHHhhhcCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHHh
Q 009647           24 SVIWFLVGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAY  102 (530)
Q Consensus        24 ~~~~~~~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  102 (530)
                      ..||.++|.++.|||| ++.++|||+|||+++.|||+...  ..++ ..+. .    .+ + ...   ...+.+..++..
T Consensus        16 ~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~--~~~~-~~~~-~----~~-~-~~~---~~~~~l~~lv~~   82 (528)
T 4b8j_A           16 NRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGL--QAQA-PVPA-S----AA-T-GVD---KKLESLPAMIGG   82 (528)
T ss_dssp             -----------CCCCC-----------------CCCC-----------------------------------CHHHHHHH
T ss_pred             HhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCC--Cccc-cccc-c----cc-c-chh---hhHHHHHHHHHH
Confidence            3899888887655555 89999999999999999997421  1111 0000 0    00 0 011   122334444555


Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCc
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PAL  180 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v  180 (530)
                      +.++|++.+..|+..|+++++...++++..+++.|++|.|+++|.+++.+.++.+|+|+|+++++++++.+..++  |++
T Consensus        83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  162 (528)
T 4b8j_A           83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (528)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence            569999999999999999999887788999999999999999999876678889999999999999888888887  799


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc-CCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      |.|+.+|.+ +++.++++|+|+|+||+.+++.+++.+...|++++|+.++ .+++..++++++|+|++||.+. +.....
T Consensus       163 ~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~  240 (528)
T 4b8j_A          163 PIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFE  240 (528)
T ss_dssp             HHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHH
T ss_pred             HHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHH
Confidence            999999998 7899999999999999999999999999999999999999 5678999999999999999875 333332


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  339 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  339 (530)
                        ...+++|.|+.++.+++++++..++|+|++|+.+.+...+.+++.|+++.|+.+| .++++.++.+|+++|+|++.++
T Consensus       241 --~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~  317 (528)
T 4b8j_A          241 --QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGD  317 (528)
T ss_dssp             --HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC
T ss_pred             --HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCC
Confidence              2579999999999999999999999999999998888888899999999999999 5778899999999999999998


Q ss_pred             ccccchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647          340 SSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  418 (530)
Q Consensus       340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA  418 (530)
                      +...+.+++      .|++|.|+.+|.++ ++.++++|+|+|+||+.+++.+++.+++.|++|.|+.+|.+++++++++|
T Consensus       318 ~~~~~~~~~------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  391 (528)
T 4b8j_A          318 DAQTQCIID------HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA  391 (528)
T ss_dssp             HHHHHHHHT------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHH------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            888888885      46999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC---------CCCcchhH
Q 009647          419 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM---------PNHEGTKL  489 (530)
Q Consensus       419 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~---------~~~~~~~~  489 (530)
                      +|+|+|++...     +    .+++.++++.|++++|+.+|..+|++++..++++|.+|+...         ..+.++..
T Consensus       392 ~~aL~nl~~~~-----~----~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~  462 (528)
T 4b8j_A          392 AWAISNATSGG-----S----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQM  462 (528)
T ss_dssp             HHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHH
T ss_pred             HHHHHHHHcCC-----C----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHH
Confidence            99999998752     2    367889999999999999999999999999999999999754         23356889


Q ss_pred             HHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCC
Q 009647          490 VEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD  529 (530)
Q Consensus       490 i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~  529 (530)
                      ++++||++.|+.|++|+|++++++|..|+++||+.+++++
T Consensus       463 i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~  502 (528)
T 4b8j_A          463 IDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDT  502 (528)
T ss_dssp             HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred             HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence            9999999999999999999999999999999999877653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.6e-60  Score=508.32  Aligned_cols=497  Identities=29%  Similarity=0.465  Sum_probs=397.1

Q ss_pred             chhhhHHHHHHH--HHH-HHh-hh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHH
Q 009647           10 NNGKRKMKIIMK--MCS-VIW-FL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQS   83 (530)
Q Consensus        10 ~~~~~~~~~~~~--~~~-~~~-~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~   83 (530)
                      ++|--+|+...+  .|. .|| ++ +|+++.|||| +.+++|||+|||++|.|||+... ....++.+++......+. .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~-~   79 (530)
T 1wa5_B            2 DNGTDSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIP-PTDGADSDEEDESSVSAD-Q   79 (530)
T ss_dssp             ----------CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------
T ss_pred             CCccccCCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCc-cccccccCCchhhhhhhh-h
Confidence            678778874432  122 688 47 7887766666 79999999999999998886321 000011000000000000 1


Q ss_pred             HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHH
Q 009647           84 ILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLT  163 (530)
Q Consensus        84 ~~~~~~~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~  163 (530)
                      .+.......++.+++.   ++++++..+..|+..|+++++...++++..+++.|++|.|+++|.+++++.++.+|+|+|+
T Consensus        80 ~~~~~~~~~i~~lv~~---L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~  156 (530)
T 1wa5_B           80 QFYSQLQQELPQMTQQ---LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT  156 (530)
T ss_dssp             -------CCHHHHHHH---HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            1111122234455544   4689999999999999999988777888899999999999999998755788899999999


Q ss_pred             HHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHH
Q 009647          164 NIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTA  241 (530)
Q Consensus       164 nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a  241 (530)
                      ++++++++.+..++  |++|.|+.+|.+ +++.++++|+|+|+||+.+++..++.++..|++++|+.++.+++..+++.+
T Consensus       157 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  235 (530)
T 1wa5_B          157 NIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA  235 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHH
Confidence            99999888888776  899999999997 789999999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC
Q 009647          242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS  321 (530)
Q Consensus       242 ~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~  321 (530)
                      +|+|++|+.+..+....  ....+++|.|+.++.+++++++..++|+|.+|+.+.++..+.+++.|+++.|+.+| .+.+
T Consensus       236 ~~~L~~L~~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~  312 (530)
T 1wa5_B          236 TWTLSNLCRGKKPQPDW--SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHES  312 (530)
T ss_dssp             HHHHHHHHCCSSSCCCH--HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSC
T ss_pred             HHHHHHHhCCCCCCCcH--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCC
Confidence            99999999875344332  33579999999999999999999999999999998788888899999999999999 4788


Q ss_pred             ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHH
Q 009647          322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALA  401 (530)
Q Consensus       322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~  401 (530)
                      +.++.+|+++|+|++.+++...+.+++      .|+++.|+.+|.++++.+++.|+|+|+|++.+++++++.+++.|++|
T Consensus       313 ~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~  386 (530)
T 1wa5_B          313 TLVQTPALRAVGNIVTGNDLQTQVVIN------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP  386 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHH------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            899999999999999998888887775      47999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          402 LLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       402 ~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                      .|+.+|.++++.++++|+|+|+|++...     .+.  .+++.++++.|++++|+.+|..++++++..++++|.+++..+
T Consensus       387 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~-----~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          387 PLVKLLEVAEYKTKKEACWAISNASSGG-----LQR--PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHT-----TTC--THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhcC-----CCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998742     110  156788999999999999999999999999999999999754


Q ss_pred             CC---------CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCC
Q 009647          482 PN---------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL  528 (530)
Q Consensus       482 ~~---------~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~  528 (530)
                      +.         +.++..++++||+++|+.|++|++++|+++|..+|++||++++++
T Consensus       460 ~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          460 EADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             hhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            32         346788999999999999999999999999999999999987764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.8e-49  Score=413.39  Aligned_cols=416  Identities=30%  Similarity=0.502  Sum_probs=368.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHc-CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~-g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      ++.+.+.+   +++|+..+..|+..|+++++...++++..+++. |++|.|+++|.+++++.++.+|+|+|++++.++++
T Consensus        22 l~~l~~~l---~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~   98 (450)
T 2jdq_A           22 TSDMIEMI---FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL   98 (450)
T ss_dssp             CHHHHHHH---HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence            34455555   489999999999999999887667888888888 99999999999875578889999999999999888


Q ss_pred             hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHh
Q 009647          172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNL  248 (530)
Q Consensus       172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL  248 (530)
                      ....++  |++|.|+.+|.+ +++.+++.|+|+|+|++.+++..++.+++.|++++|+.++.+ ++..+++.++|+|++|
T Consensus        99 ~~~~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l  177 (450)
T 2jdq_A           99 QTRIVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL  177 (450)
T ss_dssp             HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            877776  799999999998 789999999999999999988999999999999999999995 6899999999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      +.+..+......  ..+++|.|+.++.++|++++..++|+|.+++...++....+.+.|+++.|+.+| .++++.++..|
T Consensus       178 ~~~~~~~~~~~~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a  254 (450)
T 2jdq_A          178 CRGKSPPPEFAK--VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPA  254 (450)
T ss_dssp             HCCSSSCCCGGG--TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHH
T ss_pred             hCCCCCCCCHHH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHH
Confidence            987534433333  379999999999999999999999999999987777888888999999999999 47888999999


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  408 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~  408 (530)
                      +++|++++.+.+...+.+++      .|+++.|+.+|.++++.+++.|+|+|+|++.+++...+.+++.|++|.|+.+|.
T Consensus       255 ~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~  328 (450)
T 2jdq_A          255 LRAVGNIVTGDDIQTQVILN------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ  328 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHT------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHhhCChHHHHHHHH------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence            99999999998877777775      469999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC-----
Q 009647          409 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN-----  483 (530)
Q Consensus       409 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~-----  483 (530)
                      +++++++++|+|+|+|++.+.     +    .++++.+++.|+++.|+++|..++++++..++++|.+++..++.     
T Consensus       329 ~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  399 (450)
T 2jdq_A          329 TAEFRTRKEAAWAITNATSGG-----S----AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN  399 (450)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHC-----C----HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHHHHcCC-----C----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc
Confidence            999999999999999998642     2    36778889999999999999999999999999999999875431     


Q ss_pred             ----CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCCCC
Q 009647          484 ----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE  530 (530)
Q Consensus       484 ----~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~~~~  530 (530)
                          +++...+.++||+++|+.|++|+++++++.|..+|++||++++++++
T Consensus       400 ~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~  450 (450)
T 2jdq_A          400 GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSS  450 (450)
T ss_dssp             CSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             ccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccCC
Confidence                34678899999999999999999999999999999999998887653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=381.56  Aligned_cols=366  Identities=21%  Similarity=0.225  Sum_probs=296.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHcCCHHHHHHHhcCCCC-----------hHHHHHHH
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSP-----------DEQLLEAA  159 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~-~~ii~~g~v~~Lv~lL~~~~~-----------~~~~~eA~  159 (530)
                      .++.+.+++.++.+.|+..      .+|++++...++++ ..++++|++|.||++|...+.           ++++++|+
T Consensus        30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            3556666666667888763      77888888888888 788999999999999996433           68999999


Q ss_pred             HHHHHHhcCChhhHHhhc--CCc----------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHhhcCCCchhH
Q 009647          160 WCLTNIAAGKQEETKALL--PAL----------PLLIAHLGEKS-SSP-----VAE-------QCAWALGNVAGEGEEFR  214 (530)
Q Consensus       160 ~~L~nia~~~~~~~~~i~--~~v----------~~L~~lL~~~~-~~~-----v~~-------~a~~~L~nla~d~~~~r  214 (530)
                      |+|+||++++++.+....  +++          +.+++++.++. +.+     +++       +|+|+|+|++.+ +++|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R  182 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR  182 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence            999999999998887755  455          67778887631 122     566       999999999875 8999


Q ss_pred             HHHHhcCChhhhHhhcCC-----------CChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhccCCHHHH
Q 009647          215 NVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKRADEELT  282 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~~~l~~L~~lL~~~d~~v~  282 (530)
                      +.+++.|++++|+.+|..           .++.++++|+|+|.|||.+++  ..+..+. ..|++|.|+.+|.+++++++
T Consensus       183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV~LL~s~~~~v~  260 (458)
T 3nmz_A          183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALVAQLKSESEDLQ  260 (458)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence            999999999999999942           246789999999999998752  2343442 45779999999999999999


Q ss_pred             HHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC-ccccchhcccCCCcchhhHHH
Q 009647          283 TEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD-SSTISDVLVPGHGITDQVIAV  360 (530)
Q Consensus       283 ~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~-~~~~~~~i~~g~~~~~~~l~~  360 (530)
                      ..++|+|.||+.+ ++++...+.+.|+++.|+++|..+.+..++.+|+++|+||+.+. +.+.+.+..      .|++|.
T Consensus       261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~------~Gal~~  334 (458)
T 3nmz_A          261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV------DGALAF  334 (458)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS------TTHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh------cCcHHH
Confidence            9999999999985 56778889999999999998755677889999999999999844 444443323      479999


Q ss_pred             HHHHhccCcH----hHHHHHHHHHHHHhc---CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCC
Q 009647          361 LVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE  433 (530)
Q Consensus       361 L~~lL~~~~~----~i~~~A~~~Lsnl~~---~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~  433 (530)
                      |+.+|.+.+.    .+++.|+|+|+||+.   +++++.+.+++.|++|+|+.+|.+++.+++++|+|+|+|++.+.    
T Consensus       335 Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~----  410 (458)
T 3nmz_A          335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN----  410 (458)
T ss_dssp             HHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC----
T ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC----
Confidence            9999987754    499999999999996   78899999999999999999999999999999999999998632    


Q ss_pred             CCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       434 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                            .++...+++.|++++|+++|.+++++++..++++|.+|+..-+
T Consensus       411 ------~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          411 ------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             ------HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             ------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence                  3778999999999999999999999999999999999997543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.3e-42  Score=363.58  Aligned_cols=362  Identities=14%  Similarity=0.113  Sum_probs=306.0

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      .+|.|+.+|.+++ +..|.+|+++|.+++.+++..+..+.  |++|.|+.+|.+ +++++++.|+|+|.||+.++++.|.
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999876 56889999999999988776666666  899999999997 7899999999999999998899999


Q ss_pred             HHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------c--------CC
Q 009647          216 VLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------R--------AD  278 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--------~--------~d  278 (530)
                      .+++.|++|+|+++|. ++++++++.++|+|+||+.++  . .+..+.. |++|.|++++.        +        .+
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~--~-~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS--S-THHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH--H-hHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence            9999999999999999 889999999999999999763  2 3444556 99999999993        2        35


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHHhc-----CCCccchhhhHHHHhhhhcC--------------
Q 009647          279 EELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG--------------  338 (530)
Q Consensus       279 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~--------------  338 (530)
                      ++++.+++|+|+||+.+ ++..+.+.+. |+++.|+.+|..     ..+..++..++.+|.|++..              
T Consensus       157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~  235 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence            67888999999999986 7788889887 999999999952     14567788899889888631              


Q ss_pred             ------------------------------------CccccchhcccCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHH
Q 009647          339 ------------------------------------DSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLS  381 (530)
Q Consensus       339 ------------------------------------~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Ls  381 (530)
                                                          .+..++.++      +.++++.|+.+|.+. ++.+++.|+|+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~l~~L~~lL~~~~~~~~~e~a~~aL~  309 (457)
T 1xm9_A          236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY------HSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGG------SHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh------CcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence                                                112233344      457999999999765 5799999999999


Q ss_pred             HHhcCCHH---HH-HHHH-hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647          382 NIAAGSVE---HK-QLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI  456 (530)
Q Consensus       382 nl~~~~~~---~~-~~li-~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~  456 (530)
                      ||++++..   .+ +.++ +.|++|.|+++|.+++++++++|+|+|+|++.+            .+...++..|++++|+
T Consensus       310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~------------~~~~~~i~~~~i~~Lv  377 (457)
T 1xm9_A          310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH------------PLLHRVMGNQVFPEVT  377 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------------GGGHHHHHHHTHHHHH
T ss_pred             HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC------------HHHHHHHHHhhhHHHH
Confidence            99987543   23 4455 689999999999999999999999999999874            2346677789999999


Q ss_pred             hhhccCCH------HHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCC
Q 009647          457 DLVRSADI------EAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKYFGEDY  526 (530)
Q Consensus       457 ~lL~~~d~------~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~-~~~i~~~A~~il~~~f~~~~  526 (530)
                      ++|..+++      +++..++.+|.+|+...  ..+...+.++||++.|.+|+.|+ ++++|+.|..+|+.||.+.+
T Consensus       378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99998753      68889999999998654  34678899999999999999999 99999999999999998765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.4e-43  Score=383.63  Aligned_cols=366  Identities=17%  Similarity=0.108  Sum_probs=310.4

Q ss_pred             HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 009647           92 AVEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~--d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~  169 (530)
                      .++.+++++.   ++  |.+.+..|+..|..+ +...+.....+.+.|++|.|+++|++++ +.+++.|+|+|.|++.++
T Consensus       378 Lv~~l~~lL~---~~~~d~~v~~~AveaLayL-S~~~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~  452 (810)
T 3now_A          378 LAEACRRFLI---KPGKDKDIRRWAADGLAYL-TLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAY  452 (810)
T ss_dssp             HHHHHHHHHH---CSSCCSSHHHHHHHHHHHH-TTSHHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhc---CCCCCHHHHHHHHHHHHHH-hCCcHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCc
Confidence            3455666665   55  888999999999998 5444333333445899999999999866 568899999999999875


Q ss_pred             hh-----------------------------h---HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          170 QE-----------------------------E---TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       170 ~~-----------------------------~---~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      ++                             .   ++.++  |++|.|+.+|.+ +++.++++|+|+|+|||++ +++|.
T Consensus       453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d-~~~r~  530 (810)
T 3now_A          453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGL-KELRG  530 (810)
T ss_dssp             CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred             hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHH
Confidence            21                             1   24555  899999999988 7899999999999999985 67999


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-HHHHHHHHHHHHhhc
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSA  294 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~  294 (530)
                      .++++|++|+|+.+|.+++...+++|+|+|+||+.+.+|...+......+++|+|+.+|.+++. ....+++|+|.||+.
T Consensus       531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~  610 (810)
T 3now_A          531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS  610 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999865543322111124799999999986533 456799999999999


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                      ++++..+.+++.|+++.|+.+|. ++++.++.+|+++|+||+.+++.+.+.+.      ..|.++.|+.++.+.+..+++
T Consensus       611 ~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~------~~g~l~~Lv~LL~s~d~~vq~  683 (810)
T 3now_A          611 MNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEG------NNDRVKFLALLCEDEDEETAT  683 (810)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHHS------SSSHHHHHHHGGGCSSHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHHh------ccCcHHHHHHHhcCCCHHHHH
Confidence            88888889999999999999994 88899999999999999998876665552      247999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChH
Q 009647          375 EAAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS  453 (530)
Q Consensus       375 ~A~~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~  453 (530)
                      +|+|+|+||+.+++.+++.+++ .|++|+|+++|.+++++++++|+|+|+|++.++          .++..++++.|+++
T Consensus       684 ~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s----------~e~~~~l~e~G~i~  753 (810)
T 3now_A          684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG----------EEIAKKLFETDIME  753 (810)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC----------HHHHHHHHTSTHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC----------HHHHHHHHHCCCHH
Confidence            9999999999988899999999 899999999999999999999999999998742          37789999999999


Q ss_pred             HHHhhhccC---CHHHHHHHHHHHHHHHccC
Q 009647          454 GFIDLVRSA---DIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       454 ~L~~lL~~~---d~~i~~~~L~~L~~il~~~  481 (530)
                      +|+++|+..   +++++..++++|.+++..+
T Consensus       754 ~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          754 LLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            999999765   6899999999999999754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.6e-39  Score=340.11  Aligned_cols=361  Identities=17%  Similarity=0.179  Sum_probs=300.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      ++.++.++.   ++|++.+..|+..|+++. ....+....+++.|+||.|+++|.+++ +.+|++|+|+|+|++.+++++
T Consensus         4 l~~lv~~L~---s~~~~~q~~A~~~L~~l~-~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~   78 (457)
T 1xm9_A            4 IPKAVQYLS---SQDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHH---SSCTHHHHHHHHHHHHHT-SSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHC---CCCHHHHHHHHHHHHHHH-cCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHH
Confidence            456666665   889999999999999984 333333448889999999999999765 678899999999999988888


Q ss_pred             HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC--------C--------CC
Q 009647          173 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--------P--------NK  234 (530)
Q Consensus       173 ~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~--------~--------~~  234 (530)
                      +..++  |++|.|+++|..+++++++++|+|+|+||+.+ ++.|..+++ |++|+|+.+|.        +        .+
T Consensus        79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence            88887  89999999998447899999999999999997 789999999 99999999993        2        25


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhh-chHHHHHHHhcc------CCHHHHHHHHHHHHHhhcC------------
Q 009647          235 GSTVRTAAWALSNLIKGPDPKPATELIKVD-GLLDAILRHLKR------ADEELTTEVAWVVVYLSAL------------  295 (530)
Q Consensus       235 ~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~------------  295 (530)
                      ..++++|+|+|+|||.+  + ..+..+... |++|.|+.+|.+      .+..++.+++++|.+|+..            
T Consensus       157 ~~v~~~a~~aL~nLs~~--~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~  233 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSA--D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             HHHHHHHHHHHHHHTTS--H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHccC--H-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence            67888999999999975  3 345666565 999999999986      4667899999999998731            


Q ss_pred             --------------------------------------CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          296 --------------------------------------SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       296 --------------------------------------~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                                                            .+...+.+++.|+++.|+.+|..+.++.++.+|+++|+|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~  313 (457)
T 1xm9_A          234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence                                                  112334566778899999999767778999999999999999


Q ss_pred             CCcccc----chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCCh-
Q 009647          338 GDSSTI----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF-  412 (530)
Q Consensus       338 ~~~~~~----~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~-  412 (530)
                      ++..+.    +.++.     +.|++|.|+.+|.+++..++++|+|+|+|++.+.  +.+.++..|++|+|+++|.++++ 
T Consensus       314 ~~~~~~~~~~~~~v~-----~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~  386 (457)
T 1xm9_A          314 SKGLMSSGMSQLIGL-----KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGN  386 (457)
T ss_dssp             CSSSHHHHHHHHHHT-----TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred             CcCcchHHHHHHHHH-----HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCC
Confidence            876532    33442     2479999999999999999999999999998853  45666777899999999987653 


Q ss_pred             -----hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHcc
Q 009647          413 -----DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRG  480 (530)
Q Consensus       413 -----~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~  480 (530)
                           ++...|+++|.|++.+.          .++...+.+.|++++|++++.++ ++++.+.|.++|.+++..
T Consensus       387 ~~~~~~v~~~~l~~l~ni~~~~----------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          387 TSNSEDILSSACYTVRNLMASQ----------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             STTHHHHHHHHHHHHHHHHTTC----------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             CCCcHHHHHHHHHHHHHHHhcC----------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence                 68889999999998642          26788999999999999999999 999999999999998743

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=9.3e-39  Score=339.21  Aligned_cols=365  Identities=21%  Similarity=0.315  Sum_probs=320.0

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~-~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      .++.+|..|.+++ ++.|++|+..+..+.+.. ....+.++  |+||.|+++|.++++++++..|+|+|+|||.++++.+
T Consensus        58 ~i~~~v~~l~s~d-~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           58 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            5788999998876 678899999999887543 23456676  8999999999876779999999999999999899999


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-----HHHHHHHHHH
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWVV  289 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-----~v~~~a~~~L  289 (530)
                      ..+++.|+||+|+.+|.+++..+++.|+|+|+||+.+.  ...++.+...|+++.|+.++..++.     .++..++|+|
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999653  3456677788999999999987653     4688999999


Q ss_pred             HHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc
Q 009647          290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH  369 (530)
Q Consensus       290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~  369 (530)
                      ++++.+...........|+++.|+.+| .+++++++..|+++|++++.+++...+.+.+      .|+++.|+.+|.+.+
T Consensus       215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~  287 (510)
T 3ul1_B          215 SNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK------KGVVPQLVKLLGATE  287 (510)
T ss_dssp             HHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT------TTCHHHHHHHHTCSC
T ss_pred             HHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHh------cccchhhhhhhcCCC
Confidence            999987655555555578999999998 5889999999999999999988887777775      479999999999999


Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 009647          370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  449 (530)
Q Consensus       370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  449 (530)
                      ..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|.+++..++++|+|+|+|++.+.          .++...+++.
T Consensus       288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~----------~~~~~~v~~~  357 (510)
T 3ul1_B          288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVNH  357 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC----------HHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc----------HHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999998753          4678899999


Q ss_pred             CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       450 g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      |+++.|+.+|.+++.+++..+.++|.|+...+. ......+.+.|+++.|..|..+.++++...+...|.+++.
T Consensus       358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~-~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987643 2345678899999999999999999999999888877654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.3e-38  Score=337.71  Aligned_cols=405  Identities=17%  Similarity=0.200  Sum_probs=329.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  175 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~  175 (530)
                      +..++..+.++++..+..|+..|+++.+..+ .....+++.|++|.|+.+|.+++ ...+..++.+|.+++.++++....
T Consensus       103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence            3344445568999999999999999966543 34566778999999999999755 556566888999999988888877


Q ss_pred             hc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          176 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       176 i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      +.  |++|.|+.+|.+......++.++.+|.|++. ++..+..+++.|++++|+.++.++++.++++++|+|+||+++..
T Consensus       181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            76  7999999999886677888899999999997 67899999999999999999999999999999999999998642


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-CCccchhhhHHHH
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSL  332 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~~~al~~L  332 (530)
                      +   .+.  ..+++|.|++++.+++++++..++|+|++|+.++++....+.+.|+++.|+++|..+ .++.++.+|+++|
T Consensus       260 ~---~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          260 K---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             T---CSC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             h---hHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            2   122  358999999999999999999999999999997778899999999999999999642 3468899999999


Q ss_pred             hhhhcCCccc---cchhcccCCCcchhhHHHHHHHhccCc-HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647          333 GNLVAGDSST---ISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  408 (530)
Q Consensus       333 ~nl~~~~~~~---~~~~i~~g~~~~~~~l~~L~~lL~~~~-~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~  408 (530)
                      +|++.+++..   ...+++      .|++|.|+.+|.+++ +.+++.|+|+|+|++.+.. ..+.+++.|++|.|+++|.
T Consensus       335 ~nl~~~~~~~~~~~~~i~~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~  407 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHH------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHH
Confidence            9998765431   234553      469999999999876 5999999999999998754 4578889999999999999


Q ss_pred             CCChhHHHHHHHHHHHhcCCCCCCCCCchhH--------------HHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHH
Q 009647          409 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM  474 (530)
Q Consensus       409 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L  474 (530)
                      ++++++|++|+|+++|.+...   ++++.++              .+....+.+.|++++|+.++.+++++++..+..+|
T Consensus       408 ~~~~~v~~~a~~~l~n~~~~~---~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l  484 (529)
T 1jdh_A          408 RAHQDTQRRTSMGGTQQQFVE---GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL  484 (529)
T ss_dssp             HHHHHHC-----------CBT---TBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhcccCchhhhc---cccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence            999999999999999932211   1222211              12335678899999999999999999999999999


Q ss_pred             HHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          475 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       475 ~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      .++..   +..++..+.+.||++.|+.|++|+|++|+++|..+|+++
T Consensus       485 ~~l~~---~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          485 CELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHTT---SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHhc---CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99853   235678899999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-38  Score=345.20  Aligned_cols=407  Identities=17%  Similarity=0.198  Sum_probs=330.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647           97 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL  176 (530)
Q Consensus        97 ~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i  176 (530)
                      ..++..+.++++..+..|+..|+++.+.. ......+++.|++|.|+.+|.+++ +..+..++.+|++++.++++.+..+
T Consensus       101 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i  178 (644)
T 2z6h_A          101 PALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLII  178 (644)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            33444456899999999999999997654 345567778999999999999765 4555557789999999888888777


Q ss_pred             c--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 009647          177 L--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP  254 (530)
Q Consensus       177 ~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~  254 (530)
                      .  |++|.|+.+|.+.....+++.++.+|.|++. ++..|..+++.|+++.|+.++.+++..++++++|+|+|||++...
T Consensus       179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  257 (644)
T 2z6h_A          179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  257 (644)
T ss_dssp             HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred             HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence            7  7999999999986678899999999999997 678999999999999999999999999999999999999986422


Q ss_pred             CchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC-ccchhhhHHHHh
Q 009647          255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS-LQLLIPVLRSLG  333 (530)
Q Consensus       255 ~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-~~v~~~al~~L~  333 (530)
                         .+.  ..+++|.|++++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|...++ +.++.+|+++|+
T Consensus       258 ---~~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~  332 (644)
T 2z6h_A          258 ---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  332 (644)
T ss_dssp             ---CCS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---hhh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence               122  35899999999999999999999999999999878888999999999999999964343 689999999999


Q ss_pred             hhhcCCcc--ccch-hcccCCCcchhhHHHHHHHhccCc-HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647          334 NLVAGDSS--TISD-VLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       334 nl~~~~~~--~~~~-~i~~g~~~~~~~l~~L~~lL~~~~-~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~  409 (530)
                      |++..+..  +.+. +++      .++++.|+.+|.+.+ +.++++|+|+|+||+.+... .+.+++.|++|.|+++|.+
T Consensus       333 nL~~~~~~~~~~q~~v~~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~  405 (644)
T 2z6h_A          333 HLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVR  405 (644)
T ss_dssp             HHTSSSTTHHHHHHHHHH------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHH------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhc
Confidence            99975432  3343 443      479999999999875 69999999999999987644 4888999999999999998


Q ss_pred             CChhHHHHHHHHHHH--hcCCCCCCCCCchhH--------------HHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647          410 SPFDIKKEVAYVLGN--LCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF  473 (530)
Q Consensus       410 ~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~  473 (530)
                      +++++|++|+|+++|  ++.+     +++.++              .+....+.+.|++++|+++|.+.++.++..++.+
T Consensus       406 ~~~~vr~~a~~al~n~~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~a  480 (644)
T 2z6h_A          406 AHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV  480 (644)
T ss_dssp             HHHHHTTC----------CCS-----SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             cchhhhhHhhhccccchhccc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            888888888887777  4321     222111              1122467799999999999999999999999999


Q ss_pred             HHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHH------------------HHH--HHHHHHhhcCCCC
Q 009647          474 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL------------------RNM--ANGLVDKYFGEDY  526 (530)
Q Consensus       474 L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i------------------~~~--A~~il~~~f~~~~  526 (530)
                      |.++..   +.+.+..++++||++.|..|++++|+++                  |++  +..++++||..+.
T Consensus       481 L~~l~~---~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          481 LCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             HHHHHT---SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHc---CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence            999874   2346788999999999999999999999                  444  6677888887653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=4.8e-39  Score=349.92  Aligned_cols=396  Identities=15%  Similarity=0.096  Sum_probs=321.5

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCC-CCcHHHHHHcC----CHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCChhhHH
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFE-FPPIETALKAG----AIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~-~~~~~~ii~~g----~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      ..+.+++...+..|+..|+++-+... +++. ..++.|    ++|.|+.+|.++ .+++.+..|+|+|.+++.+......
T Consensus       337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~-~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~  415 (810)
T 3now_A          337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAI-RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK  415 (810)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSC-CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhccccccCccc-cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            34457888899999999999854322 2221 123333    467788888876 1355667899999999987654444


Q ss_pred             hhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-----------------------------hhH---HHHHhc
Q 009647          175 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-----------------------------EFR---NVLLSQ  220 (530)
Q Consensus       175 ~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-----------------------------~~r---~~~~~~  220 (530)
                      .+.  |++|.|+.+|++ +++.++..|+|+|+||+.+.+                             ..+   +.+++.
T Consensus       416 lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea  494 (810)
T 3now_A          416 LIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE  494 (810)
T ss_dssp             HHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence            443  699999999997 788999999999999998542                             123   688999


Q ss_pred             CChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647          221 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT  300 (530)
Q Consensus       221 g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~  300 (530)
                      |++|+|+.++.++++.+++.|+|+|+||+..   ...+..+...|++|.|+.+|.++++..+..|+|+|.+|+.+.+...
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            9999999999999999999999999999953   2367777789999999999999999999999999999997433322


Q ss_pred             HH--HHhcCchHHHHHHHhcCCCc-cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHH
Q 009647          301 SL--LVKSGVLQLLVERLATSNSL-QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA  377 (530)
Q Consensus       301 ~~--i~~~g~l~~Lv~lL~~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~  377 (530)
                      ..  ....|++++|+.+|. ++.. ..+..|+++|+|++.+++...+.+++.      |++|.|+.+|.++++.+++.|+
T Consensus       572 ~~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a------G~l~~Lv~LL~s~~~~Vq~~A~  644 (810)
T 3now_A          572 SFSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKE------QGVSKIEYYLMEDHLYLTRAAA  644 (810)
T ss_dssp             HTTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHHHSCCTTHHHHHH
T ss_pred             hhcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc------CCHHHHHHHHcCCCHHHHHHHH
Confidence            10  012468999999984 4422 334689999999999988877788854      6999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-cCChHHH
Q 009647          378 WVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-RGCLSGF  455 (530)
Q Consensus       378 ~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~L  455 (530)
                      |+|+||+.+. +....+++ .|.++.|+.++.+.+..+|++|+|+|+|++.++          ..+++.+++ .|++++|
T Consensus       645 ~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s----------~~~~~~ii~~~g~I~~L  713 (810)
T 3now_A          645 QCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS----------VKCCEKILAIASWLDIL  713 (810)
T ss_dssp             HHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC----------HHHHHHHHTSTTHHHHH
T ss_pred             HHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHcCCHHHH
Confidence            9999999865 45555555 789999999999999999999999999998732          367889998 8999999


Q ss_pred             HhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC---CcHHHHHHHHHHHHhh
Q 009647          456 IDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH---ENEDLRNMANGLVDKY  521 (530)
Q Consensus       456 ~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~---~~~~i~~~A~~il~~~  521 (530)
                      +.+|.++|.+++..++++|.|+....  ......+.++||++.|..|...   .+.++++.|...|+..
T Consensus       714 v~LL~s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l  780 (810)
T 3now_A          714 HTLIANPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA  780 (810)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence            99999999999999999999998743  2456888999999999998643   4899999998888776

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=8.8e-38  Score=333.41  Aligned_cols=365  Identities=21%  Similarity=0.317  Sum_probs=319.5

Q ss_pred             CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          138 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~-~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      .++.++..+.+++ ++.|++|+..+.++.+.. ....+.++  |+||.|+++|..++++.++..|+|+|+|||.++++.+
T Consensus        77 ~l~~lv~~l~s~d-~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           77 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            5788888998866 678899999999876543 33455666  8999999999876789999999999999999888999


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-----HHHHHHHHHH
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWVV  289 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-----~v~~~a~~~L  289 (530)
                      ..+++.|++|+|+.++.+++..+++.|+|+|+||+...  ...++.+...|+++.|+.++..++.     .++..++|+|
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  233 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  233 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999642  3456677789999999999986653     4688999999


Q ss_pred             HHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc
Q 009647          290 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH  369 (530)
Q Consensus       290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~  369 (530)
                      ++++.+...........|+++.|+.+| .+++++++..|+++|++++.+++...+.+++      .|++|.|+.+|.+++
T Consensus       234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~------~g~i~~Lv~lL~~~~  306 (529)
T 3tpo_A          234 SNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK------KGVVPQLVKLLGATE  306 (529)
T ss_dssp             HHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT------TTCHHHHHHHHTCSC
T ss_pred             HHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh------ccchHHHHHHhcCCC
Confidence            999987655555555678999999998 5889999999999999999988887777775      479999999999999


Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 009647          370 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR  449 (530)
Q Consensus       370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~  449 (530)
                      ..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|.+++..++++|+|+|+|++.+.          .++...+++.
T Consensus       307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~----------~~~~~~v~~~  376 (529)
T 3tpo_A          307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVNH  376 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC----------HHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc----------HHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999753          4678889999


Q ss_pred             CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       450 g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      |++++|+.+|.+++.+++..+.++|.|+...+. ......+.+.|+++.|..|..++++++...+...|.+++.
T Consensus       377 g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          377 GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987543 2345677899999999999999999999999888877653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=4.7e-38  Score=331.66  Aligned_cols=361  Identities=20%  Similarity=0.231  Sum_probs=293.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-Chh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG-KQE  171 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~-~~~  171 (530)
                      ++.+++++   .+++++.+..|+..|+++.. ........+++.|+||.||++|.+++ +.+|..|+|+|.||+.+ +++
T Consensus        50 i~~LV~~L---~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           50 LPEVIAML---GFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             HHHHHHHT---TCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHH
T ss_pred             HHHHHHHH---CCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHH
Confidence            44555554   58999999999999999854 44456678899999999999999866 77889999999999997 577


Q ss_pred             hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC------------------
Q 009647          172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------------------  231 (530)
Q Consensus       172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~------------------  231 (530)
                      ++..++  |+||.|+.+|.+..+.+++++|+|+|.|++. +++.+..++. +++|+|++++.                  
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            888887  8999999999875678999999999999998 6788888885 57999999871                  


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhcc------CCHHHHHHHHHHHHHhhcCCc-------
Q 009647          232 PNKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKR------ADEELTTEVAWVVVYLSALSN-------  297 (530)
Q Consensus       232 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~~~-------  297 (530)
                      .++..++++|+|+|.||+... + ..+..+. ..|+++.|+.++.+      .+...+.+|+|+|.||+....       
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~-~-~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSER-S-EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSC-H-HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccHHHHHHHHHHHHHHhcCC-H-HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence            235799999999999999753 2 2244443 45778899999974      466899999999999996411       


Q ss_pred             ------------------hhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc---cchhcccCCCcchh
Q 009647          298 ------------------VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST---ISDVLVPGHGITDQ  356 (530)
Q Consensus       298 ------------------~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~---~~~~i~~g~~~~~~  356 (530)
                                        ..++.+...++++.|+.+|..+.++.++.+|+++|.|++.+....   .+.++.     ..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-----~~~  355 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-----QEK  355 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-----SHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-----HcC
Confidence                              112233445667788999976778899999999999999876432   233332     357


Q ss_pred             hHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--------ChhHHHHHHHHHHHhcCC
Q 009647          357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--------PFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       357 ~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--------~~~v~~eA~~aL~nl~~~  428 (530)
                      ++|.|+.+|.+++..+++.|+|+|+||+.+..  .+.++..|++|.|+++|.++        +.++...|+|+|.|++.+
T Consensus       356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~  433 (584)
T 3l6x_A          356 ALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE  433 (584)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998753  34456789999999999876        357899999999999864


Q ss_pred             CCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC--CHHHHHHHHHHHHHHHc
Q 009647          429 PTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARLGLQFMELVLR  479 (530)
Q Consensus       429 ~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~i~~~~L~~L~~il~  479 (530)
                      .          .++.+.+++.|+|+.|+.+|.+.  .+.+++.|..+|.+++.
T Consensus       434 ~----------~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          434 N----------LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             C----------HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             C----------HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            2          37788999999999999999986  78999999999999974

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.6e-37  Score=331.69  Aligned_cols=366  Identities=19%  Similarity=0.298  Sum_probs=319.8

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      ...+|.|+..|.+++ +..+.+|+++|.+++++.. .....++  |++|.|+.+|.+++++.++..|+|+|+|++.++++
T Consensus        73 ~~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           73 LESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             --CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            346999999998765 7788899999999987664 4555555  89999999998844499999999999999998899


Q ss_pred             hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHHHHH
Q 009647          213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVY  291 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~  291 (530)
                      .+..+++.|++|+|+.+|.+++..+++.|+|+|+||+...  ...+..+...+++|.|+.++ .+.++.++..++|+|++
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~  229 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS--PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN  229 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999653  23455666789999999999 67789999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647          292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  371 (530)
Q Consensus       292 L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~  371 (530)
                      |+.+.+. .......|+++.|+.+| .++++.++..|+++|++++.+.+...+.+++      .|+++.|+.+|.++++.
T Consensus       230 L~~~~~~-~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~------~g~v~~Lv~lL~~~~~~  301 (528)
T 4b8j_A          230 FCRGKPQ-PSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIE------AGVCPRLVELLLHPSPS  301 (528)
T ss_dssp             HHCSSSC-CCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH------TTCHHHHHHHTTCSCHH
T ss_pred             HHcCCCC-CcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCHHHHHHHHHcCCChh
Confidence            9986432 23344589999999999 5888999999999999999888777777775      47999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC-ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 009647          372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG  450 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~-~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g  450 (530)
                      ++..|+|+|+||+.+++...+.+++.|++|.|+.+|.++ ++.++++|+|+|+|++.+.          .+++..+++.|
T Consensus       302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~----------~~~~~~~~~~~  371 (528)
T 4b8j_A          302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN----------KDQIQAVINAG  371 (528)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC----------HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC----------HHHHHHHHHCC
Confidence            999999999999999999999999999999999999998 9999999999999998742          36788999999


Q ss_pred             ChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          451 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       451 ~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      +++.|+.+|.+++++++..++++|.++...+. ......+.+.|+++.|..+..++++++...|...|.+++.
T Consensus       372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGS-HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987642 2345667788999999999999999999999988888764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.4e-37  Score=327.97  Aligned_cols=372  Identities=18%  Similarity=0.191  Sum_probs=302.5

Q ss_pred             HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-C
Q 009647          134 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-G  210 (530)
Q Consensus       134 i~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~  210 (530)
                      .+.+.+|.||.+|.+++ +.+|++|+|+|.+++.++.+++..++  |+||.|+.+|.+ ++++++++|+|+|+||+.. +
T Consensus        45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSC
T ss_pred             cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCC
Confidence            35789999999999876 77889999999999999988888887  899999999998 7899999999999999984 6


Q ss_pred             chhHHHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------------
Q 009647          211 EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------------  275 (530)
Q Consensus       211 ~~~r~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--------------  275 (530)
                      +++|..+++.|+||+|+.+|.+ .+.+++++++|+|+||+..+  .. +..+. .+++|.|++++.              
T Consensus       123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~-k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~  198 (584)
T 3l6x_A          123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SI-KMEIV-DHALHALTDEVIIPHSGWEREPNEDC  198 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GG-HHHHH-HHTHHHHHHHTHHHHHCCC-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hh-hHHHH-hccHHHHHHHHhcccccccccccccc
Confidence            8999999999999999999996 57899999999999999753  23 33333 468999999872              


Q ss_pred             ----cCCHHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHHhcC-----CCccchhhhHHHHhhhhcCCcccc--
Q 009647          276 ----RADEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLATS-----NSLQLLIPVLRSLGNLVAGDSSTI--  343 (530)
Q Consensus       276 ----~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~~-----~~~~v~~~al~~L~nl~~~~~~~~--  343 (530)
                          .++++++.+++|+|.||+..+++..+.+.+. |+++.|+.+|..+     .+...+.+|+++|.|++...+...  
T Consensus       199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~  278 (584)
T 3l6x_A          199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ  278 (584)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence                2367999999999999998777767778774 6678999998532     456788999999999997631110  


Q ss_pred             ----ch----------hccc-CCC--cchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCH---HHHHHHH-hCCcHH
Q 009647          344 ----SD----------VLVP-GHG--ITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSV---EHKQLIH-SSEALA  401 (530)
Q Consensus       344 ----~~----------~i~~-g~~--~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~---~~~~~li-~~~~l~  401 (530)
                          ..          +.+. |..  +..++++.|+.+|. +.++.+++.|+|+|+||+++..   ..++.++ +.+++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp  358 (584)
T 3l6x_A          279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS  358 (584)
T ss_dssp             CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred             hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence                00          0011 110  24578899999995 4578999999999999998752   2334444 468899


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC--------CHHHHHHHHHH
Q 009647          402 LLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--------DIEAARLGLQF  473 (530)
Q Consensus       402 ~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--------d~~i~~~~L~~  473 (530)
                      .|+.+|.+++..+++.|+|+|+|++.++.            .+..+..|+++.|+.+|..+        ..+++..++.+
T Consensus       359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~------------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~t  426 (584)
T 3l6x_A          359 AIADLLTNEHERVVKAASGALRNLAVDAR------------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT  426 (584)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHTTCS------------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhCChh------------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHH
Confidence            99999999999999999999999997531            13455789999999999986        36788889999


Q ss_pred             HHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHHHhhcCCC
Q 009647          474 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKYFGED  525 (530)
Q Consensus       474 L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il~~~f~~~  525 (530)
                      |.||+...  ....+.|.+.||++.|..|..+.  .+.+.+.|..+|..+|.+.
T Consensus       427 L~NL~a~~--~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          427 INEVIAEN--LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             HHHHHTTC--HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence            99998542  34678889999999999998875  8999999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2e-36  Score=323.34  Aligned_cols=369  Identities=17%  Similarity=0.249  Sum_probs=321.3

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~-~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      .+.+|.|+..|.+++ +..+..|+++|.++.+.. ......++  |++|.|+.+|.+++++.++..|+|+|++++.++++
T Consensus        86 ~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           86 QQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             -CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            467999999999875 678889999999997653 33344444  79999999998844899999999999999998889


Q ss_pred             hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647          213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  292 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  292 (530)
                      .+..++..|++++|+.+|.++++.+++.|+|+|++|+...  ...++.+...+++|.|+.++.+.+++++..++|+|++|
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L  242 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  242 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999653  23455555789999999999999999999999999999


Q ss_pred             hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647          293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  372 (530)
Q Consensus       293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i  372 (530)
                      +.+...........++++.|+.+| .++++.++..|+++|++++.+.+...+.+++      .|+++.|+.+|.+.++.+
T Consensus       243 ~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~~v~~Lv~lL~~~~~~v  315 (530)
T 1wa5_B          243 CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVID------VRIPKRLVELLSHESTLV  315 (530)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH------TTCHHHHHHGGGCSCHHH
T ss_pred             hCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh------cCcHHHHHHHHCCCChhh
Confidence            986534445566789999999999 5788899999999999999887777777764      479999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                      +..|+|+|+|++.+++...+.+++.|++|.|+.+|.++++.++++|+|+|+|++.+.          .++++.+++.|++
T Consensus       316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~----------~~~~~~~~~~~~l  385 (530)
T 1wa5_B          316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN----------TEQIQAVIDANLI  385 (530)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----------HHHHHHHHHCCCH
Confidence            999999999999999888999999999999999999999999999999999998642          3677888999999


Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCC-CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647          453 SGFIDLVRSADIEAARLGLQFMELVLRGMPN-HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~-~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~  524 (530)
                      +.|+.+|..++++++..++++|.+++..+.. ......+.+.|+++.|..+..+++++++..|...|.+++..
T Consensus       386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999876421 13456677899999999999999999999999999888754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=3.3e-35  Score=326.58  Aligned_cols=404  Identities=17%  Similarity=0.209  Sum_probs=324.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  175 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~  175 (530)
                      +..++..+.++++..+..|+.+|.++.+... .....+.+.|++|.|+.+|.+++ ..++..|+.+|.+++.++.+....
T Consensus       236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~  313 (780)
T 2z6g_A          236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  313 (780)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHH
Confidence            3345555678999999999999999966533 33455668999999999999754 556566899999999888777777


Q ss_pred             hc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          176 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       176 i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      +.  ++++.|+.+|.+.+....++.++.+|.+++. ++..+..+++.|+++.|+.++.+++..++++++|+|.+|+....
T Consensus       314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~  392 (780)
T 2z6g_A          314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  392 (780)
T ss_dssp             HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence            66  6899999999986667788899999999997 57889999999999999999999999999999999999997653


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc-cchhhhHHHH
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-QLLIPVLRSL  332 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~-~v~~~al~~L  332 (530)
                      ..   ..  ..+++|.|+.+|.+++++++..++|+|++|+.++++....+++.|+++.|+.+|..+.+. .++.+|+++|
T Consensus       393 ~~---~~--~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          393 KQ---EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TC---SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hh---hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            21   11  358999999999999999999999999999998888889999999999999999643443 8999999999


Q ss_pred             hhhhcCCccc--c-chhcccCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647          333 GNLVAGDSST--I-SDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  408 (530)
Q Consensus       333 ~nl~~~~~~~--~-~~~i~~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~  408 (530)
                      +||+..+...  . ..+.+      .++++.|+.+|.+.+. .++++|+|+|+||+.+. .....+.+.|++|.|+.+|.
T Consensus       468 ~nL~~~~~~~~~~~~~v~~------~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~  540 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV  540 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHH------cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHH
Confidence            9998755431  1 23443      4689999999998775 99999999999999865 44578889999999999998


Q ss_pred             CCChhHHHHHHHHHHH--hcCCCCCCCCCchhH--------------HHHHHHHHhcCChHHHHhhhccCCHHHHHHHHH
Q 009647          409 TSPFDIKKEVAYVLGN--LCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  472 (530)
Q Consensus       409 ~~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~  472 (530)
                      +++++++++|+|+++|  ++.+     +++.++              .+....+.+.|++++|+.+|.++++.++..++.
T Consensus       541 ~~~~~~~~~aa~al~nq~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~  615 (780)
T 2z6g_A          541 RAHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG  615 (780)
T ss_dssp             HHHHHHHHTTC------CCSTT-----CCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             hcchhHHHHHhhccccchhhcc-----cChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence            8777777766666665  3221     111111              123345778999999999999999999999999


Q ss_pred             HHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          473 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       473 ~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      +|.++..   +...+..|.+.||++.|..|+++++++|++.|...|.++.
T Consensus       616 aL~~L~~---~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~  662 (780)
T 2z6g_A          616 VLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  662 (780)
T ss_dssp             HHHHHHT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            9999863   2356788999999999999999999999766554444443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.2e-35  Score=310.07  Aligned_cols=371  Identities=19%  Similarity=0.255  Sum_probs=312.1

Q ss_pred             HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 009647           92 AVEELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ  170 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~-d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~  170 (530)
                      .++.|.+++.   ++ ++..+..|+..|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+.+
T Consensus        65 ~i~~L~~~L~---~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~  139 (450)
T 2jdq_A           65 VVARFVEFLK---RKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDST  139 (450)
T ss_dssp             HHHHHHHHHT---CTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHC---CCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCH
Confidence            3456666654   66 8999999999999996543 233456778999999999999765 6787889999999999888


Q ss_pred             hhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647          171 EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN  247 (530)
Q Consensus       171 ~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n  247 (530)
                      +.+..++  |++|.|+.+|.+.++..++..|+|+|+|++.+. +..+..+ ..+++|.|+.++.+++..++..++|+|++
T Consensus       140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~  218 (450)
T 2jdq_A          140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSY  218 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            7777776  799999999986568999999999999999765 3333333 37899999999999999999999999999


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhh
Q 009647          248 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP  327 (530)
Q Consensus       248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~  327 (530)
                      |+.+..  .....+...+++|.|+.++.+++++++..++|+|++++.+.+...+.+++.|+++.|+.+| .++++.++..
T Consensus       219 l~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~  295 (450)
T 2jdq_A          219 LSDGPN--DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKE  295 (450)
T ss_dssp             HTSSSH--HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHH
T ss_pred             HHCCCc--HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHH
Confidence            997632  2233444679999999999999999999999999999998887788888999999999999 4778899999


Q ss_pred             hHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHH
Q 009647          328 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHL  406 (530)
Q Consensus       328 al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~l  406 (530)
                      |+++|+|++.+++...+.+++      .+++|.|+.+|.++++.+|..|+|+|+|++.+ ++++++.+++.|++|.|+++
T Consensus       296 a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l  369 (450)
T 2jdq_A          296 ACWTISNITAGNRAQIQTVID------ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL  369 (450)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG
T ss_pred             HHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence            999999999988877777774      47999999999999999999999999999975 67888889999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHhcCCCCCC----CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          407 LSTSPFDIKKEVAYVLGNLCVSPTEG----EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       407 L~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      +.+++++++..|+|+|.|++......    .+.   +..++..+.+.|+++.|..++.++++++...++.+|.+++..
T Consensus       370 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          370 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             GGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhchhhhhccccc---hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            99999999999999999998632100    000   013456788899999999999999999999999999999843

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=299.39  Aligned_cols=326  Identities=18%  Similarity=0.145  Sum_probs=269.1

Q ss_pred             HHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCH----------HHHHHHhcCCC--C
Q 009647           93 VEELKSAVAYHGK---------GAMQKRVNALRELRRLLSRFEFPPIETALKAGAI----------PVLVQCLAFGS--P  151 (530)
Q Consensus        93 ~~~l~~~l~~l~s---------~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v----------~~Lv~lL~~~~--~  151 (530)
                      ++-|+++++.-..         ++++.+++|+.+|.++.+..++. .+...+.|++          +.+++++.+..  .
T Consensus        72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  150 (458)
T 3nmz_A           72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDD-KRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM  150 (458)
T ss_dssp             HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred             HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcch-hHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence            5667777762111         55899999999999998876543 4566778888          77888887542  0


Q ss_pred             h-----------HHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcC----------CCCHHHHHHHHHHHHhhcC
Q 009647          152 D-----------EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAG  208 (530)
Q Consensus       152 ~-----------~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~----------~~~~~v~~~a~~~L~nla~  208 (530)
                      +           ..+..|+|+|.|++.+ ++.++.++  |+++.|+.+|..          +.++.+++.|+|+|.|||.
T Consensus       151 ~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~  229 (458)
T 3nmz_A          151 DQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF  229 (458)
T ss_dssp             CCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence            1           1235799999999765 77888887  899999999941          1346799999999999999


Q ss_pred             CCchhHHHHHh-cCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHH
Q 009647          209 EGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVA  286 (530)
Q Consensus       209 d~~~~r~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~  286 (530)
                      +++..+..+.. .|+||+|+.+|.+++.++++.++|+|+||+.+.++ ..+..+...|++|.|+++| .+.+++++..++
T Consensus       230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH-HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH-HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            87778877765 56699999999999999999999999999975322 3456666789999999975 567889999999


Q ss_pred             HHHHHhhcCCchhHHHHH-hcCchHHHHHHHhcCCCc----cchhhhHHHHhhhhc---CCccccchhcccCCCcchhhH
Q 009647          287 WVVVYLSALSNVATSLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVI  358 (530)
Q Consensus       287 ~~L~~L~~~~~~~~~~i~-~~g~l~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l  358 (530)
                      ++|++|+...+++...+. ..|+++.|+.+|. +.+.    +++..|+++|.|++.   +++...+.++++      |++
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------G~i  381 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCL  381 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THH
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc------ccH
Confidence            999999984545555555 7899999999995 4443    378999999999997   777788888754      699


Q ss_pred             HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      |.|+.+|.+++..++++|+|+|+|++.+++++++.+++.|++|+|+++|.+++.++++.|+|+|.||+.+
T Consensus       382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999988999999999999999999999999999999999999999975

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.3e-33  Score=301.07  Aligned_cols=399  Identities=18%  Similarity=0.228  Sum_probs=326.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .++.+++++.  .++|++.+..|+..|+++ +..++ +...+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++
T Consensus        60 ~i~~Lv~~L~--~~~~~~~~~~a~~~L~~l-s~~~~-~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~  134 (529)
T 1jdh_A           60 MVSAIVRTMQ--NTNDVETARCTAGTLHNL-SHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHHHHH--HCCCHHHHHHHHHHHHHH-TTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHh--cCCCHHHHHHHHHHHHHH-HcCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcc
Confidence            3556666664  245899999999999997 54433 5677889999999999999866 77888999999999988766


Q ss_pred             hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHh
Q 009647          172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNL  248 (530)
Q Consensus       172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL  248 (530)
                      .+..+.  |++|.|+.+|.+ ++++++..++.+|+|++.++++.+..+.+.|+++.|+.++.++ +......++.+|.+|
T Consensus       135 ~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l  213 (529)
T 1jdh_A          135 AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             HHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            666665  899999999998 7899999999999999998899999999999999999999865 456777889999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      +...  . .+..+...|++|.|+.++.+++++++..++|+|.+|+...+...   ...|+++.|+.+| .+.+++++..|
T Consensus       214 ~~~~--~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll-~~~~~~v~~~a  286 (529)
T 1jdh_A          214 SVCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLL-GSDDINVVTCA  286 (529)
T ss_dssp             TTST--T-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred             hcCc--c-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHH-cCCCHHHHHHH
Confidence            9643  3 34455568999999999999999999999999999998543221   2247899999999 57889999999


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCHH---HHHHHHhCCcHHHH
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALL  403 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~~---~~~~li~~~~l~~L  403 (530)
                      +++|+|++.+++...+.+.+      .|+++.|+.+|.+.  ++.++..|+++|+|++.++++   ....+++.|++|.|
T Consensus       287 ~~~L~~L~~~~~~~~~~~~~------~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L  360 (529)
T 1jdh_A          287 AGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV  360 (529)
T ss_dssp             HHHHHHHTTTCHHHHHHHHH------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHH------cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHH
Confidence            99999999887767777775      46999999999763  379999999999999886433   35678899999999


Q ss_pred             HHHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHH-------------
Q 009647          404 LHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL-------------  469 (530)
Q Consensus       404 i~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~-------------  469 (530)
                      +.+|.+++ ..++++|+|+|+|++.++           +....+++.|+++.|+++|..++++++..             
T Consensus       361 ~~lL~~~~~~~v~~~a~~~l~nl~~~~-----------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~  429 (529)
T 1jdh_A          361 VKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG  429 (529)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred             HHHhccccchHHHHHHHHHHHHHhcCh-----------hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence            99999876 599999999999998742           22367889999999999998876666554             


Q ss_pred             ---------HHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          470 ---------GLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       470 ---------~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                               ++.+|.+++.   ....+..+.+.|+++.|..+..++++++++.|...+.++..
T Consensus       430 ~~~~~i~~~~~~al~~L~~---~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          430 VRMEEIVEGCTGALHILAR---DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             BCHHHHHHHHHHHHHHHTT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHhc---CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                     4444555542   22345678889999999999999999999999988887653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=7e-34  Score=285.30  Aligned_cols=272  Identities=22%  Similarity=0.252  Sum_probs=234.1

Q ss_pred             CHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC-----------CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          192 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       192 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                      ....+.+|+|+|+|++.+ +++|+.+++.|++++|+.+|..           .++.++++|+|+|.|||.+++  ..+..
T Consensus        45 ~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~k~~  121 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKAT  121 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HHHHH
T ss_pred             chHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HHHHH
Confidence            345667999999999997 7999999999999999999952           246899999999999998742  23444


Q ss_pred             H-HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          261 I-KVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       261 v-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      + ...|++|.|+++|.+++++++..++|+|.||+.+ ++++...+.+.|+++.|+++|..+.+..++.+|+++|+|++.+
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            4 2456799999999999999999999999999985 4567888899999999999865677888999999999999985


Q ss_pred             Cccccchhc-ccCCCcchhhHHHHHHHhccCcH----hHHHHHHHHHHHHhc---CCHHHHHHHHhCCcHHHHHHHhcCC
Q 009647          339 DSSTISDVL-VPGHGITDQVIAVLVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTS  410 (530)
Q Consensus       339 ~~~~~~~~i-~~g~~~~~~~l~~L~~lL~~~~~----~i~~~A~~~Lsnl~~---~~~~~~~~li~~~~l~~Li~lL~~~  410 (530)
                      .+.....+. .      .|++|.|+.+|.+.+.    .+++.|+|+|+|++.   +++++++.+++.|++|+|+.+|.++
T Consensus       202 ~~~nk~~i~~~------~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~  275 (354)
T 3nmw_A          202 CTENKADICAV------DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH  275 (354)
T ss_dssp             CHHHHHHHHHS------TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS
T ss_pred             ChhhhHHHHHh------cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence            544333333 3      4799999999987654    499999999999997   7889999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          411 PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       411 ~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      +..++++|+|+|+|++.+.          .++...+++.|++++|+++|.+++++++..+..+|.+|+...+
T Consensus       276 ~~~v~~~A~~aL~nLa~~~----------~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          276 SLTIVSNACGTLWNLSARN----------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             CHHHHHHHHHHHHHHTSSC----------HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             ChHHHHHHHHHHHHHhCCC----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999998642          3678899999999999999999999999999999999997643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=297.87  Aligned_cols=400  Identities=18%  Similarity=0.219  Sum_probs=328.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .++.|++.+.  .+++++.+..|+..|+.+ +.... ....+++.|++|.|+++|.+++ +.++..|+|+|.|++.+...
T Consensus        57 ~i~~Lv~~L~--~~~~~~~~~~A~~~L~~L-s~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~  131 (644)
T 2z6h_A           57 MVSAIVRTMQ--NTNDVETARCTAGTLHNL-SHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  131 (644)
T ss_dssp             HHHHHHHHHH--SCCCHHHHHHHHHHHHHH-TTSHH-HHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHh--cCCCHHHHHHHHHHHHHH-hcChh-hHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcch
Confidence            3556666665  245899999999999986 54433 5677888999999999999865 77888999999999988766


Q ss_pred             hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHh
Q 009647          172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNL  248 (530)
Q Consensus       172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL  248 (530)
                      ....+.  |++|.|+.+|.+ ++++++..++.+|++++..+++.+..+.+.|+++.|+.++.+. ...++..++.+|.||
T Consensus       132 ~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL  210 (644)
T 2z6h_A          132 AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  210 (644)
T ss_dssp             HHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            666665  799999999998 6788888888899999987889999999999999999999876 467889999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      +...  . .+..+...+++|.|+.++.+++..++..++|+|.+|+......   ....++++.|+.+| .+.++.++..|
T Consensus       211 s~~~--~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~v~~~a  283 (644)
T 2z6h_A          211 SVCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCA  283 (644)
T ss_dssp             TTCT--T-HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred             hcCc--c-cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHH-cCCCHHHHHHH
Confidence            9643  3 3455557899999999999999999999999999999754321   11247899999999 57889999999


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC--cHhHHHHHHHHHHHHhcCCH--HHHH-HHHhCCcHHHH
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSV--EHKQ-LIHSSEALALL  403 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~--~~~i~~~A~~~Lsnl~~~~~--~~~~-~li~~~~l~~L  403 (530)
                      +++|++++.+++...+.+++      .|+++.|+.+|.+.  .+.++..|+++|+||+.+.+  +..+ .+++.|++|.|
T Consensus       284 ~~aL~~L~~~~~~~~~~v~~------~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L  357 (644)
T 2z6h_A          284 AGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV  357 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH------cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHH
Confidence            99999999887776777775      46999999999863  27999999999999987543  2334 47889999999


Q ss_pred             HHHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC-------------------
Q 009647          404 LHLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD-------------------  463 (530)
Q Consensus       404 i~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d-------------------  463 (530)
                      +++|.+++ ..++++|+|+|+|++.++           +....+++.|+++.|+++|...+                   
T Consensus       358 ~~lL~~~~~~~v~~~a~~~L~nLa~~~-----------~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~  426 (644)
T 2z6h_A          358 VKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG  426 (644)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred             HHHhCccCchHHHHHHHHHHHHHccCH-----------HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence            99998875 699999999999998742           22378889999999999998743                   


Q ss_pred             ---HHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647          464 ---IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       464 ---~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~  524 (530)
                         .+++..++.+|.++...   ...+..+.+.|+++.|..+..++++++++.|...|.++..+
T Consensus       427 ~~~~~v~~~a~~aL~~La~~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          427 VRMEEIVEGCTGALHILARD---VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHHHHHHhcC---HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence               45666778888887643   24567788999999999999999999999999888876643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1e-31  Score=298.58  Aligned_cols=398  Identities=18%  Similarity=0.223  Sum_probs=326.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .++.|++.+.  .+.+++.+..|+..|+++ +.... ....+.+.|+||.|+.+|++++ +.++.+|+|+|.|++.++++
T Consensus       193 ~i~~Lv~~L~--~~~d~~vr~~Aa~aL~~L-s~~~~-~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~  267 (780)
T 2z6g_A          193 MVSAIVRTMQ--NTNDVETARCTSGTLHNL-SHHRE-GLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEG  267 (780)
T ss_dssp             HHHHHHHHHH--HCCCHHHHHHHHHHHHHH-HTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHc--CCCCHHHHHHHHHHHHHH-hCCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChh
Confidence            3455555554  245899999999999996 54433 3667888999999999999865 77889999999999988777


Q ss_pred             hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-hhHHHHHHHHHHHh
Q 009647          172 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNL  248 (530)
Q Consensus       172 ~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nL  248 (530)
                      .+..+.  |++|.|+.+|.+ ++.++++.|+.+|.+++..+++.+..+.+.|+++.|+.++++.+ ......++.+|.+|
T Consensus       268 ~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L  346 (780)
T 2z6g_A          268 AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  346 (780)
T ss_dssp             HHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            777775  799999999998 78999999999999999888899999999999999999999764 45667889999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      +...  . .+..+...+++|.|+.++.+.+++++..++|+|.+|+......   ....++++.|+.+| .+.++.++..|
T Consensus       347 s~~~--~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~vr~~A  419 (780)
T 2z6g_A          347 SVCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCA  419 (780)
T ss_dssp             HTST--T-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred             hcCh--H-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH-cCCCHHHHHHH
Confidence            9643  2 3445557899999999999999999999999999999754321   12246899999998 57889999999


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC-c-HhHHHHHHHHHHHHhcCCHH---HHHHHHhCCcHHHH
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-H-RVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALL  403 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~-~-~~i~~~A~~~Lsnl~~~~~~---~~~~li~~~~l~~L  403 (530)
                      +++|++|+.+++...+.+++      .|+++.|+.+|.+. + ..++..|+|+|+||+..+++   ....+.+.|++|.|
T Consensus       420 ~~aL~~L~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L  493 (780)
T 2z6g_A          420 AGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV  493 (780)
T ss_dssp             HHHHHHHTSSCHHHHHHHHT------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHH------CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHH
Confidence            99999999988777777775      46999999999763 3 48999999999999875433   23467889999999


Q ss_pred             HHHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC-------------------
Q 009647          404 LHLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD-------------------  463 (530)
Q Consensus       404 i~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d-------------------  463 (530)
                      +.+|.+++. .++++|+|+|+|++.++           +....+.+.|+++.|+.+|...+                   
T Consensus       494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~-----------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~  562 (780)
T 2z6g_A          494 VKLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG  562 (780)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHHHHSSH-----------HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTT
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHhcCH-----------HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcc
Confidence            999988775 99999999999998742           33478889999999999998654                   


Q ss_pred             ---HHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          464 ---IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       464 ---~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                         .+++..++.+|.++..   +...+..+.+.|+++.|..+..+++++++..|...|..+.
T Consensus       563 ~~~~~v~~~a~~aL~~La~---~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          563 VRMEEIVEACTGALHILAR---DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHhc---ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence               3455667788888753   2234567889999999999999999999999988877664

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=2.7e-32  Score=273.77  Aligned_cols=265  Identities=19%  Similarity=0.168  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcC----------CCCHHHHHHHHHHHHhhcCCCchhHHHHHh-cC
Q 009647          155 LLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QG  221 (530)
Q Consensus       155 ~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~----------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g  221 (530)
                      +..|+|+|.|++.+ ++.++.++  |++|.|+.+|..          ..++.+++.|+|+|.|||.+++..|..+.. .|
T Consensus        49 ~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G  127 (354)
T 3nmw_A           49 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  127 (354)
T ss_dssp             HHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            35799999999987 67888887  899999999952          124789999999999999887778888765 45


Q ss_pred             ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHHHHHhhcCCchhH
Q 009647          222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSNVAT  300 (530)
Q Consensus       222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~  300 (530)
                      +||+|+.+|.+++.++++.++|+|+||+.+.+ ...+..+...|++|.|+++| .+.+++++..++++|.+|+...+++.
T Consensus       128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          128 CMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            69999999999999999999999999997532 23456666789999999975 56788999999999999998555555


Q ss_pred             HHHH-hcCchHHHHHHHhcCCCc----cchhhhHHHHhhhhc---CCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647          301 SLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  372 (530)
Q Consensus       301 ~~i~-~~g~l~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i  372 (530)
                      ..+. ..|+++.|+.+|. +.+.    +++..|+++|.|++.   ++++..+.++++      |++|.|+.+|.+++..+
T Consensus       207 ~~i~~~~Gai~~Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~v  279 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCLQTLLQHLKSHSLTI  279 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT------THHHHHHHHTTCSCHHH
T ss_pred             HHHHHhcCcHHHHHHHhc-cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc------CCHHHHHHHHcCCChHH
Confidence            5665 7899999999995 4443    478899999999997   677778888864      69999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      +++|+|+|+|++.+++++.+.+++.|++|+|+++|.+++..++++|+|+|.|++.+
T Consensus       280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999988999999999999999999999999999999999999999975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.5e-28  Score=235.57  Aligned_cols=242  Identities=24%  Similarity=0.354  Sum_probs=222.1

Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      +.+|.|+.+|.+ ++++++..|+|+|++++.+.++.+..+.+.|+++.|+.++++++..++..++|+|.+|+.+.  ...
T Consensus         2 ~~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~   78 (252)
T 4hxt_A            2 NDVEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEA   78 (252)
T ss_dssp             CHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHH
T ss_pred             CcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHH
Confidence            568999999998 67999999999999999988889999999999999999999999999999999999999753  234


Q ss_pred             hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      +..+...+++|.|+.++.+++++++..++|+|.+|+..+++....+.+.|+++.|+.+| .++++.++..++++|+|++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence            55566789999999999999999999999999999987888888999999999999999 57888999999999999999


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      +++...+.+++      .|+++.|+.++.++++.++..|+|+|+|++.+++...+.+.+.|+++.|++++.++++++++.
T Consensus       158 ~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  231 (252)
T 4hxt_A          158 GPDEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE  231 (252)
T ss_dssp             SCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred             CCHHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence            88777677775      479999999999999999999999999999989899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 009647          418 VAYVLGNLCVSP  429 (530)
Q Consensus       418 A~~aL~nl~~~~  429 (530)
                      |+|+|+|++...
T Consensus       232 a~~~L~~l~~~~  243 (252)
T 4hxt_A          232 AQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=8.3e-28  Score=230.36  Aligned_cols=240  Identities=28%  Similarity=0.382  Sum_probs=217.1

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      |.+|.|+.+|.+++ ++++..|+|+|.+++.+.++....++  |++|.|+.+|.+ +++++++.|+|+|+|++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHH
Confidence            67999999999877 77888999999999999887777777  799999999998 789999999999999999889999


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      ..+.+.|+++.|+.++++++..++..++|+|++|+... + .....+...+++|.|++++.+++++++..++|+|++|+.
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-D-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999643 2 334455578999999999999999999999999999999


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                      +++...+.+.+.|+++.|+.+| .++++.++..|+++|++++.+++...+.+.+      .|+++.|+.++.++++.+++
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~  230 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLTSTDSEVQK  230 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGGCSCHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHCCCcHHHHH
Confidence            8888888899999999999999 4788899999999999999988777777775      47999999999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 009647          375 EAAWVLSNIAAGS  387 (530)
Q Consensus       375 ~A~~~Lsnl~~~~  387 (530)
                      .|+|+|+|++...
T Consensus       231 ~a~~~L~~l~~~~  243 (252)
T 4hxt_A          231 EAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999998754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=3.4e-28  Score=233.68  Aligned_cols=239  Identities=27%  Similarity=0.419  Sum_probs=216.1

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ..+.++..|.+ ++++++..|+|+|.++...+++.+..+++.|+++.|+.+|+++++.++..++|+|.+++.+. + ...
T Consensus        13 ~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~-~~~   89 (252)
T 4db8_A           13 ELPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N-EQI   89 (252)
T ss_dssp             SHHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-H-HHH
T ss_pred             hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H-HHH
Confidence            57899999988 78899999999998877667788899999999999999999999999999999999999753 2 334


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                      ..+...|++|.|+.+|.+++++++..++|+|++|+.+.+.....+.+.|+++.|+.+| .++++.++..|+++|+|++.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            5556789999999999999999999999999999987666658889999999999999 578889999999999999998


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  418 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA  418 (530)
                      ++...+.+++      .|+++.|+.+|.++++.++..|+|+|+|++.+++...+.+++.|+++.|+.++.+++++++++|
T Consensus       169 ~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A  242 (252)
T 4db8_A          169 GNEQIQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA  242 (252)
T ss_dssp             CHHHHHHHHH------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred             ChHHHHHHHH------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence            8777777764      4799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 009647          419 AYVLGNLCV  427 (530)
Q Consensus       419 ~~aL~nl~~  427 (530)
                      +|+|+|++.
T Consensus       243 ~~~L~~l~~  251 (252)
T 4db8_A          243 QEALEKLQS  251 (252)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHHhc
Confidence            999999974

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=1.1e-27  Score=233.98  Aligned_cols=225  Identities=16%  Similarity=0.179  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH-HHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhH
Q 009647          280 ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE-RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI  358 (530)
Q Consensus       280 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l  358 (530)
                      +-+..|+..|.+++. +.++...+.+.|+++.|+. +| .++++.++..|+++|||++.+++...+.+++.      |++
T Consensus        55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL-~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~------g~l  126 (296)
T 1xqr_A           55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYL-EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL------GAL  126 (296)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THH
T ss_pred             HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CCH
Confidence            567889999999998 4456667789999999999 98 58899999999999999999988888888854      699


Q ss_pred             HHHHHHhcc-CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 009647          359 AVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK  437 (530)
Q Consensus       359 ~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~  437 (530)
                      |.|+.+|.+ .+..+++.|+|+|+||+.+++...+.+++.|++|.|+.+|.++++.++++|+|+|+|++.+.        
T Consensus       127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--------  198 (296)
T 1xqr_A          127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--------  198 (296)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------
Confidence            999999986 47899999999999999999998999999999999999999999999999999999998742        


Q ss_pred             hHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCC---------cchhHHHHhchHHHHHHHhcCC-c
Q 009647          438 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH---------EGTKLVEREDGIDAMERFQFHE-N  507 (530)
Q Consensus       438 ~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~---------~~~~~i~~~ggl~~L~~L~~~~-~  507 (530)
                        .+++..+++.|++++|+.+|.++|++++..++.+|.+|+...+..         ....++++     .++.||.|+ +
T Consensus       199 --~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~  271 (296)
T 1xqr_A          199 --PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEY  271 (296)
T ss_dssp             --GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGG
T ss_pred             --hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHH
Confidence              256789999999999999999999999999999999998753210         11223332     477788777 8


Q ss_pred             HHHHHHHHHHHHhhcCCCCC
Q 009647          508 EDLRNMANGLVDKYFGEDYG  527 (530)
Q Consensus       508 ~~i~~~A~~il~~~f~~~~~  527 (530)
                      +++|++|..|+++||+++++
T Consensus       272 ~e~~~~~~~il~~~f~~~~~  291 (296)
T 1xqr_A          272 QEELEFCEKLLQTCFSSPAD  291 (296)
T ss_dssp             HHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999987554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1e-27  Score=230.36  Aligned_cols=238  Identities=25%  Similarity=0.411  Sum_probs=212.1

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      ...+.++..|.+++ ++++..|+|+|.++.+...+....++  |++|.|+.+|.+ ++++++..|+|+|+|++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence            45889999999877 45788999999988876666666666  799999999998 679999999999999999889999


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      ..+++.|+++.|+.+|+++++.+++.++|+|+||+.+.  ......+...+++|.|++++.++++.++..++|+|++|+.
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999763  2222455578999999999999999999999999999999


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                      ++++....+.+.|+++.|+.+| .++++.++..|+++|+|++.+++...+.+++      .|+++.|+.++.++++.+++
T Consensus       168 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~v~~  240 (252)
T 4db8_A          168 GGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE------AGALEKLEQLQSHENEKIQK  240 (252)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHTTTTCSSSHHHH
T ss_pred             CChHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH------CCcHHHHHHHhCCCCHHHHH
Confidence            8888888899999999999999 4778899999999999999888777777775      47999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 009647          375 EAAWVLSNIAA  385 (530)
Q Consensus       375 ~A~~~Lsnl~~  385 (530)
                      .|+|+|+||+.
T Consensus       241 ~A~~~L~~l~~  251 (252)
T 4db8_A          241 EAQEALEKLQS  251 (252)
T ss_dssp             THHHHHHTTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2e-25  Score=238.51  Aligned_cols=320  Identities=13%  Similarity=0.126  Sum_probs=248.7

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHH-HHH-HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh--------
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIE-TAL-KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE--------  171 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~-~ii-~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~--------  171 (530)
                      .+.+++...+..|+..|..+ +..  +.+. .+. +.|.++.|+.++.......+.+.++.+|.|++...+.        
T Consensus       342 ~L~~~~~~~~~~AvEgLaYL-Sl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l  418 (778)
T 3opb_A          342 AISRRIVPKVEMSVEALAYL-SLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXX  418 (778)
T ss_dssp             HTTTCCHHHHHHHHHHHHHH-TTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--
T ss_pred             HHhcCCccHHHHHHHHHHHH-hCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhh
Confidence            44466777799999999987 544  3333 333 4778999999998533345778999999999963321        


Q ss_pred             ------------------------------hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647          172 ------------------------------ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  219 (530)
Q Consensus       172 ------------------------------~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  219 (530)
                                                    .+..++  |++|.|+.++.+ +++.++++|+|+|+||+.+ +++|..+++
T Consensus       419 ~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d-~~~R~~lvq  496 (778)
T 3opb_A          419 XXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRS-KNFIPQLAQ  496 (778)
T ss_dssp             ----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTS-GGGHHHHHH
T ss_pred             hhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence                                          123334  799999999988 7899999999999999985 899999999


Q ss_pred             cCChhhhHhhcCCCChh---HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CCHH------------H-H
Q 009647          220 QGALPPLARMMLPNKGS---TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEE------------L-T  282 (530)
Q Consensus       220 ~g~i~~L~~lL~~~~~~---~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-~d~~------------v-~  282 (530)
                      +|++++|+.++.+....   .+.+|+++|++|+...+|...+..-...+++|+|+.+|.. ++..            + .
T Consensus       497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~  576 (778)
T 3opb_A          497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN  576 (778)
T ss_dssp             TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred             CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence            99999999999876433   8999999999999765443211100013899999999983 2211            2 6


Q ss_pred             HHHHHHHHHhhcCCc----hhHHHHHhc-CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647          283 TEVAWVVVYLSALSN----VATSLLVKS-GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV  357 (530)
Q Consensus       283 ~~a~~~L~~L~~~~~----~~~~~i~~~-g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~  357 (530)
                      .+|+.+|.||+..++    +....++.. |+++.|.++|. +++..++..|+++++|++...+...+.+.+.+.....+.
T Consensus       577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r  655 (778)
T 3opb_A          577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN  655 (778)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc
Confidence            799999999998652    335667775 99999999994 778889999999999999865533344543220011235


Q ss_pred             HHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcC--CChhHHHHHHHHHHHhcC
Q 009647          358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--SPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       358 l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~--~~~~v~~eA~~aL~nl~~  427 (530)
                      ++.|+.++.+++..+|+.|+|+|+|++.+.+..++.+++. ++++.++.++++  ++.+++..++.++.|++.
T Consensus       656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998888888999987 799999999988  899999999999999995

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=8.5e-24  Score=197.10  Aligned_cols=200  Identities=27%  Similarity=0.391  Sum_probs=180.4

Q ss_pred             hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCch
Q 009647          219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV  298 (530)
Q Consensus       219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~  298 (530)
                      ..|..++|+.+++++++.++..|+|+|.+|+.+.  ......+...+++|.|+.+|.+++++++..++|+|++|+.++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            4578899999999999999999999999999653  23344555789999999999999999999999999999987888


Q ss_pred             hHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHH
Q 009647          299 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  378 (530)
Q Consensus       299 ~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~  378 (530)
                      ....+++.|+++.|+.+| .++++.++..|+++|+|++.+++...+.+++      .|+++.|+.++.++++.++..|+|
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~  160 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSPNEQILQEALW  160 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCcHHHHHHHHcCCCHHHHHHHHH
Confidence            889999999999999999 5788999999999999999988777777775      479999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          379 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       379 ~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      +|+|++.++++....+.+.|+++.|++++.++++++++.|+|+|.+++.
T Consensus       161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9999999888999999999999999999999999999999999999974

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1e-23  Score=196.52  Aligned_cols=199  Identities=24%  Similarity=0.333  Sum_probs=182.1

Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      ..+..|.|..+|.++|++++..++|+|.+++.++++....+++.|+++.|+++| .++++.++..|+++|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            458889999999999999999999999999988888889999999999999999 5778899999999999999888887


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                      .+.+++      .|++|.|+.+|.++++.++..|+|+|+|++.++++..+.+++.|++|.|+++|.++++.++..|+|+|
T Consensus        89 ~~~i~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  162 (210)
T 4db6_A           89 IQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (210)
T ss_dssp             HHHHHH------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHH------CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence            777775      47999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647          423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il  478 (530)
                      +|++...          .+....+.+.|+++.|+.++.+++++++..++.+|.++.
T Consensus       163 ~~l~~~~----------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          163 SNIASGG----------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHTSC----------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCC----------cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            9999752          256778889999999999999999999999999999885

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1e-22  Score=217.74  Aligned_cols=391  Identities=16%  Similarity=0.166  Sum_probs=293.3

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHH
Q 009647          106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIA  185 (530)
Q Consensus       106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~  185 (530)
                      .+.......+..|... +.+  ......+..+.+|.|.+.++.   +.++..|+-+|..+.+........+....+.+.+
T Consensus       268 ~~~~~~~a~L~lLsaA-Ci~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~  341 (778)
T 3opb_A          268 QDLQFTKELLRLLSSA-CID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFIN  341 (778)
T ss_dssp             CCHHHHHHHHHHHHHH-CCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH-hCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence            4444445555555443 333  233667788899999999975   3456668888888876543322233357888999


Q ss_pred             hhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-CChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCC--------
Q 009647          186 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPK--------  255 (530)
Q Consensus       186 lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~--------  255 (530)
                      +|.+ ++.+-+..|++.|+.++.+ ++.|..+... |+++.|+.++++ .+..+...++.+|.|++......        
T Consensus       342 ~L~~-~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~  419 (778)
T 3opb_A          342 AISR-RIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXX  419 (778)
T ss_dssp             HTTT-CCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC---
T ss_pred             HHhc-CCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhh
Confidence            9987 5666699999999999984 6777777755 669999999995 78899999999999999854310        


Q ss_pred             ----------c------------------hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcC
Q 009647          256 ----------P------------------ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG  307 (530)
Q Consensus       256 ----------~------------------~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g  307 (530)
                                |                  .+..+...|++|.|+.++.++++.++..++|+|.+|+. +++....+++.|
T Consensus       420 ~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqG  498 (778)
T 3opb_A          420 XXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQG  498 (778)
T ss_dssp             ---------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTT
T ss_pred             hhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence                      0                  12345678999999999999999999999999999996 578888999999


Q ss_pred             chHHHHHHHhcCCCcc---chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-CcHh------------
Q 009647          308 VLQLLVERLATSNSLQ---LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRV------------  371 (530)
Q Consensus       308 ~l~~Lv~lL~~~~~~~---v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~------------  371 (530)
                      +++.|+.+|. +....   .+..|+++|+++....+...  ++. |.. -.+++|+|+.+|.. +...            
T Consensus       499 al~~LL~lL~-s~~~~~~~~k~~AA~ALArLlis~np~~--~f~-~~~-~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~  573 (778)
T 3opb_A          499 AVKIILEYLA-NKQDIGEPIRILGCRALTRMLIFTNPGL--IFK-KYS-ALNAIPFLFELLPRSTPVDDNPLHNDEQIKL  573 (778)
T ss_dssp             HHHHHHHHTT-CC---CCHHHHHHHHHHHHHHHTSCHHH--HSS-SSC-STTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred             CHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHhcCCHHH--HcC-CCc-cccchHHHHHHcCCCCCcccccccccccccH
Confidence            9999999995 44322   68899999999995544322  111 100 13799999999983 2111            


Q ss_pred             H-HHHHHHHHHHHhcCC----HHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH-H
Q 009647          372 L-KKEAAWVLSNIAAGS----VEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL-V  444 (530)
Q Consensus       372 i-~~~A~~~Lsnl~~~~----~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~-~  444 (530)
                      + +.+|+.+|.||+..+    ++..+.++.. |++|.|.++|.+++..+|+.|+|+|+|++.+++           .+ +
T Consensus       574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-----------~i~~  642 (778)
T 3opb_A          574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-----------TIAA  642 (778)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-----------GTGG
T ss_pred             HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-----------HHHH
Confidence            2 789999999999876    3446778886 999999999999999999999999999997531           11 1


Q ss_pred             HHHh------cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchh-HHHHhchHHHHHHHhcC--CcHHHHHHHH
Q 009647          445 SLVG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK-LVEREDGIDAMERFQFH--ENEDLRNMAN  515 (530)
Q Consensus       445 ~l~~------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~-~i~~~ggl~~L~~L~~~--~~~~i~~~A~  515 (530)
                      .+.+      .+.++.|+.++..+|.+++..|.++|.++....+  ..+. +++..+|++.+..+...  ++++++..+.
T Consensus       643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~--~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~  720 (778)
T 3opb_A          643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP--LIAKELLTKKELIENAIQVFADQIDDIELRQRLL  720 (778)
T ss_dssp             GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH--HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh--HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence            2222      1247899999999999999999999999854321  2334 44445899988777666  8999999999


Q ss_pred             HHHHhhcC
Q 009647          516 GLVDKYFG  523 (530)
Q Consensus       516 ~il~~~f~  523 (530)
                      .++...+.
T Consensus       721 ~~l~NL~~  728 (778)
T 3opb_A          721 MLFFGLFE  728 (778)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999886

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.91  E-value=3.4e-24  Score=209.36  Aligned_cols=182  Identities=17%  Similarity=0.193  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHH-hhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhh
Q 009647          153 EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIA-HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM  229 (530)
Q Consensus       153 ~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~-lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l  229 (530)
                      +.+..|+..|.+++.... ....+.  |++|.|+. +|.+ ++++++++|+|+|+|++.+++.+++.+++.|++|+|+.+
T Consensus        55 e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            345669999999997543 444443  89999999 9987 789999999999999999999999999999999999999


Q ss_pred             cCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 009647          230 MLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV  308 (530)
Q Consensus       230 L~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~  308 (530)
                      |++ ++..+++.|+|+|+||+++..  +..+.+...+++|.|+.+|.+++..++..++|+|+||+.++++.++.+++.|+
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~--~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~  210 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQE--AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence            995 588999999999999998752  33444556899999999999999999999999999999988889999999999


Q ss_pred             hHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647          309 LQLLVERLATSNSLQLLIPVLRSLGNLVAGD  339 (530)
Q Consensus       309 l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  339 (530)
                      ++.|+.+| .+++..++.+|+++|+||+.+.
T Consensus       211 i~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          211 VQQLVALV-RTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHHHH-TSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCChhHHHHHHHHHHHHHhCC
Confidence            99999999 5889999999999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=182.52  Aligned_cols=196  Identities=16%  Similarity=0.107  Sum_probs=166.0

Q ss_pred             CHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          138 AIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       138 ~v~~Lv~lL~~~~~-~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      .+|.||++|.++++ ..+|..|+++|.+++.++++.+..+.  |+||.|+++|.+ +++++++.|+|+|.||+.+++++|
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999998774 26778899999999998888888887  899999999998 789999999999999999889999


Q ss_pred             HHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----------------cC
Q 009647          215 NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----------------RA  277 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~----------------~~  277 (530)
                      ..+.+.|+||+|+++|. +++.+++++++.+|+||+..+.   .+..+. .+++|.|+.++.                ..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~---~k~~i~-~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK---LKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG---GHHHHH-HHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh---hHHHHH-hccHHHHHHHHhccccCCcccccccccccc
Confidence            99999999999999998 5789999999999999996532   233332 468999988663                13


Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHHhc-CchHHHHHHHhcC-----CCccchhhhHHHHhhhhcC
Q 009647          278 DEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLATS-----NSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       278 d~~v~~~a~~~L~~L~~~~~~~~~~i~~~-g~l~~Lv~lL~~~-----~~~~v~~~al~~L~nl~~~  338 (530)
                      +++++.++.++|.||+..+++..+.+.+. |+++.|+.++...     .+...+++|+.+|.|+++.
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            67899999999999998777888888875 7789999998631     2556788999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=4.6e-20  Score=172.60  Aligned_cols=197  Identities=14%  Similarity=0.113  Sum_probs=166.8

Q ss_pred             ChhhhHhhcCCCCh--hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh
Q 009647          222 ALPPLARMMLPNKG--STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA  299 (530)
Q Consensus       222 ~i~~L~~lL~~~~~--~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~  299 (530)
                      .+|+|+++|.++++  .++..++|++.+||.++  ...+..|...|++|.|+++|.+++++++..|+|+|.+|+.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~--~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK--SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC--HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC--cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            58999999999887  89999999999999753  234556667899999999999999999999999999999878889


Q ss_pred             HHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-------------
Q 009647          300 TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-------------  366 (530)
Q Consensus       300 ~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-------------  366 (530)
                      ...+.+.|+++.|+++|..+++.+++..|..+|.|++..+... ..+++       +++|+|+.++.             
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~-------~~i~~Lv~ll~~p~sG~~~~~~~~  158 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMIT-------EALLTLTENIIIPFSGWPEGDYPK  158 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHH-------HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHh-------ccHHHHHHHHhccccCCccccccc
Confidence            9999999999999999964678889999999999998765443 33432       57999988763             


Q ss_pred             ---cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCC------ChhHHHHHHHHHHHhcCC
Q 009647          367 ---SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTS------PFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       367 ---~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~------~~~v~~eA~~aL~nl~~~  428 (530)
                         ..+..++..|.++|.|++..+++..+.+.+. |+++.|+.+++..      +.+.++.|+.+|.||++.
T Consensus       159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence               1256899999999999999888899999886 6789999999652      457899999999999874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.74  E-value=8.8e-17  Score=180.97  Aligned_cols=349  Identities=13%  Similarity=0.104  Sum_probs=250.4

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh----
Q 009647          100 VAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA----  175 (530)
Q Consensus       100 l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~----  175 (530)
                      ++.+.++++..+..++..+..+.+.......     .+++|.|++.+.+++ +..+..|+.+|..++...+.....    
T Consensus        96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~  169 (852)
T 4fdd_A           96 LNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD  169 (852)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence            3456688889999999999998765422111     467899999998765 455556899999998654333221    


Q ss_pred             --hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          176 --LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       176 --i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                        +-..+|.|++++++ +++.+|..|+++|+++....+..-.. .-..+++.+..++.+++..++..++++|..++... 
T Consensus       170 ~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~-  246 (852)
T 4fdd_A          170 RPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR-  246 (852)
T ss_dssp             SCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC-
Confidence              11478888888887 78999999999999988643321100 11246788888888999999999999999999753 


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh---cCchHHHHHHHh----------cC-
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK---SGVLQLLVERLA----------TS-  319 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~---~g~l~~Lv~lL~----------~~-  319 (530)
                      +......  ..++++.++.++.+.+++++..+++++..+++... ... .+.   ..+++.++..+.          .. 
T Consensus       247 ~~~~~~~--l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~  322 (852)
T 4fdd_A          247 MDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  322 (852)
T ss_dssp             HHHHGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred             HHHHHHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence            2221122  24688888999999999999999999999986431 111 111   134555555541          12 


Q ss_pred             ----------CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH
Q 009647          320 ----------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE  389 (530)
Q Consensus       320 ----------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~  389 (530)
                                .+..++..|..+|+.++...+.   .++       ..++|.+..++.+.++.+|..|+|++++++.+..+
T Consensus       323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-------~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~  392 (852)
T 4fdd_A          323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-------PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ  392 (852)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHGG---GGH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHhccH---HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence                      2335677889999988865432   233       25888999999999999999999999999998866


Q ss_pred             HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHH
Q 009647          390 HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL  469 (530)
Q Consensus       390 ~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~  469 (530)
                      .....+ .+++|.++..+.++++.||..|+|+|++++....          .....-.-.++++.|+..|.++++.++..
T Consensus       393 ~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~----------~~~~~~~~~~ll~~L~~~L~d~~~~vr~~  461 (852)
T 4fdd_A          393 GMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV----------SQPPDTYLKPLMTELLKRILDSNKRVQEA  461 (852)
T ss_dssp             HHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH----------HSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            554433 3589999999999999999999999999975210          00000011356788999998899999999


Q ss_pred             HHHHHHHHHccCC
Q 009647          470 GLQFMELVLRGMP  482 (530)
Q Consensus       470 ~L~~L~~il~~~~  482 (530)
                      ++.+|.+++....
T Consensus       462 a~~aL~~l~~~~~  474 (852)
T 4fdd_A          462 ACSAFATLEEEAC  474 (852)
T ss_dssp             HHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.72  E-value=3.5e-16  Score=152.22  Aligned_cols=259  Identities=14%  Similarity=0.085  Sum_probs=201.5

Q ss_pred             HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647          133 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       133 ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      ..+.+.++.|+..|.+++ +.++..|+++|.++..  +       .+++.|+.+|.+ +++.++..|+|+|+++......
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~-------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q-------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H-------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccc
Confidence            345778999999998655 6777889999999973  2       267899999987 7899999999999999753322


Q ss_pred             hHHHHHhcCChhhhH-hhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHH
Q 009647          213 FRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY  291 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  291 (530)
                      ...      +++.|. .+++++++.++..++|+|++++... +.    .  ...++|.|..++.++++.++..++++|++
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-~~----~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKN-PI----Y--SPKIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-GG----G--HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-Cc----c--cHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence            111      233343 2456789999999999999998542 11    1  24678999999999999999999999998


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647          292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  371 (530)
Q Consensus       292 L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~  371 (530)
                      +..           .++++.|+.+| .++++.++..|+++|+++....               ..+++.|..++.++++.
T Consensus       155 ~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~---------------~~~~~~L~~~l~d~~~~  207 (280)
T 1oyz_A          155 IND-----------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------------SDIRDCFVEMLQDKNEE  207 (280)
T ss_dssp             C--------------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC---------------HHHHHHHHHHTTCSCHH
T ss_pred             cCC-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc---------------HHHHHHHHHHhcCCCHH
Confidence            864           24789999988 5788899999999999984221               25889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647          372 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  451 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  451 (530)
                      +|..|+++|+++.  +         ...++.|+.++.+++  ++..|+++|+.+..                     ..+
T Consensus       208 vR~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------------~~~  253 (280)
T 1oyz_A          208 VRIEAIIGLSYRK--D---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------------KTL  253 (280)
T ss_dssp             HHHHHHHHHHHTT--C---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------------GGG
T ss_pred             HHHHHHHHHHHhC--C---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------------hhh
Confidence            9999999999985  2         247899999998754  89999999999842                     135


Q ss_pred             hHHHHhhhcc-CCHHHHHHHHHHHHH
Q 009647          452 LSGFIDLVRS-ADIEAARLGLQFMEL  476 (530)
Q Consensus       452 i~~L~~lL~~-~d~~i~~~~L~~L~~  476 (530)
                      ++.|..++.. ++++++..+++.|.+
T Consensus       254 ~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          254 LPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             hHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            6888888865 667788777776653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.72  E-value=1.2e-15  Score=164.33  Aligned_cols=372  Identities=15%  Similarity=0.209  Sum_probs=247.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      +.+|.+.+   .+++...+..++..+..+...+.+.       +.+.+.+++++.+++ ..+++-+..++.+++...++.
T Consensus        15 ~~~i~~~L---~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~   83 (591)
T 2vgl_B           15 IFELKAEL---NNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDM   83 (591)
T ss_dssp             HHHHHHHT---TSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHH---cCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchH
Confidence            45565555   4889999999998888877666543       236777888887655 666666788888887654433


Q ss_pred             HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                         +.-+++.|.+-|++ +++.++..|+.+|+++..  ++....     .++.+.+++.++++.+++.|++++.++++..
T Consensus        84 ---~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~  152 (591)
T 2vgl_B           84 ---AIMAVNSFVKDCED-PNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN  152 (591)
T ss_dssp             ---HHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS
T ss_pred             ---HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC
Confidence               33467888888887 899999999999999973  444333     3578999999999999999999999999743


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchh---------HHHHHh------------------
Q 009647          253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA---------TSLLVK------------------  305 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~---------~~~i~~------------------  305 (530)
                       |.    .+...+++|.+..+|.++|+.++..|+++|..++..+++.         ...++.                  
T Consensus       153 -p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~  227 (591)
T 2vgl_B          153 -AQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLS  227 (591)
T ss_dssp             -CC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             -hh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence             43    2223578999999999999999999999999999754322         211111                  


Q ss_pred             ----------cCchHHHHHHHhcCCCccchhhhHHHHhhhhcC---CccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647          306 ----------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  372 (530)
Q Consensus       306 ----------~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~---~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i  372 (530)
                                ..+++.+..+| .+.++.++..|++++..+...   +++..+.+.       ..+.+.|+.++. +++.+
T Consensus       228 ~l~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-------~~~~~~L~~L~~-~d~~v  298 (591)
T 2vgl_B          228 NYNPKDDREAQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-------KKLAPPLVTLLS-GEPEV  298 (591)
T ss_dssp             TSCCCSHHHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-------HHTHHHHHHHTT-SCHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-------HHHHHHHHHHhc-CCccH
Confidence                      11233333333 466778888899999888642   222222222       135556665543 55667


Q ss_pred             HHHHHHHHHHHhcCCHH-----------------HH-----HHHH---hC----CcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647          373 KKEAAWVLSNIAAGSVE-----------------HK-----QLIH---SS----EALALLLHLLSTSPFDIKKEVAYVLG  423 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~-----------------~~-----~~li---~~----~~l~~Li~lL~~~~~~v~~eA~~aL~  423 (530)
                      |..|+.+|+.++...++                 .+     ..+.   +.    .+++.|...+.+.+.+++++++++|+
T Consensus       299 r~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~  378 (591)
T 2vgl_B          299 QYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIG  378 (591)
T ss_dssp             HHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            77777766666532110                 00     0111   11    24566777778889999999999999


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHH-H
Q 009647          424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMER-F  502 (530)
Q Consensus       424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~-L  502 (530)
                      +++..-      |    ..     ...+++.|+++|...+..+...++.++..|++..++.       ...++..|.. +
T Consensus       379 ~la~~~------~----~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-------~~~~v~~L~~~l  436 (591)
T 2vgl_B          379 RCAIKV------E----QS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-------YESIIATLCENL  436 (591)
T ss_dssp             HHHTTC------H----HH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-------CCTTHHHHHHTT
T ss_pred             HHHHhC------h----hH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-------HHHHHHHHHHHH
Confidence            998641      1    11     1336788999999888888888888888888765431       1122333322 2


Q ss_pred             hcCCcHHHHHHHHHHHHhhc
Q 009647          503 QFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       503 ~~~~~~~i~~~A~~il~~~f  522 (530)
                      .....++++..+.++|-+|-
T Consensus       437 ~~~~~~~~~~~~~wilGey~  456 (591)
T 2vgl_B          437 DSLDEPDARAAMIWIVGEYA  456 (591)
T ss_dssp             TTCCSHHHHHHHHHHHHTTC
T ss_pred             HhccCHHHHHHHHHHHHccc
Confidence            33445566666666666653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.71  E-value=3.2e-16  Score=176.39  Aligned_cols=396  Identities=13%  Similarity=0.087  Sum_probs=273.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647           95 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus        95 ~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      -+..++..+.+.++..|..|+..|++.+...= ..+..-.+..+-+.+++.|..++ +.++..++.+++.++.....  .
T Consensus        49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w-~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~--~  124 (852)
T 4fdd_A           49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF-QNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGEL--Q  124 (852)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG-GGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTT--T
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCc--c
Confidence            34444544457889999999999999876421 11122233455667777777544 66777899999999965421  1


Q ss_pred             hhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH----hcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647          175 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL----SQGALPPLARMMLPNKGSTVRTAAWALSNLIK  250 (530)
Q Consensus       175 ~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~  250 (530)
                      ..-+.+|.|+..+.+ +++.+++.++++|+.++.+.+...+.-.    -..+++.++.++++++..++..|+++|.+++.
T Consensus       125 ~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~  203 (852)
T 4fdd_A          125 NWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII  203 (852)
T ss_dssp             TCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            222578999999987 7899999999999999975433211100    12367888888888999999999999999886


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHH
Q 009647          251 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR  330 (530)
Q Consensus       251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~  330 (530)
                      .. +......  ...+++.+..++.+++++++..++++|..++...++.....+. ++++.++..+ .+.++.++..|+.
T Consensus       204 ~~-~~~~~~~--~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e  278 (852)
T 4fdd_A          204 SR-TQALMLH--IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACE  278 (852)
T ss_dssp             TT-CHHHHTS--HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHH
T ss_pred             cc-cHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHH
Confidence            53 2211111  2478899999999999999999999999999855544322222 4677777777 4678889999999


Q ss_pred             HHhhhhcCCccccchhcccCCCcchhhHHHHHHHh-----------cc-----------CcHhHHHHHHHHHHHHhcCCH
Q 009647          331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-----------KS-----------EHRVLKKEAAWVLSNIAAGSV  388 (530)
Q Consensus       331 ~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL-----------~~-----------~~~~i~~~A~~~Lsnl~~~~~  388 (530)
                      ++..++.....  ...+..   .-..++|.++..+           .+           .+..+|+.|+.++..++...+
T Consensus       279 ~l~~l~~~~~~--~~~~~~---~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~  353 (852)
T 4fdd_A          279 FWLTLAEQPIC--KDVLVR---HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR  353 (852)
T ss_dssp             HHHHHTTSTTH--HHHHTT---THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHhcchhH--HHHHHH---HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence            99998854321  111110   0135778888777           22           233679999999999876432


Q ss_pred             HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHH
Q 009647          389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR  468 (530)
Q Consensus       389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~  468 (530)
                      +.   ++. .++|.+...+.+++..+|..|+++|++++.+.          .+.... .-.++++.++.++.++++.++.
T Consensus       354 ~~---~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~----------~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~  418 (852)
T 4fdd_A          354 DE---LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGC----------MQGMIP-YLPELIPHLIQCLSDKKALVRS  418 (852)
T ss_dssp             GG---GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT----------HHHHGG-GHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----------hHHHHH-HHHHHHHHHHHHcCCCCHHHHH
Confidence            21   222 36788888889999999999999999998743          122221 2246789999999999999999


Q ss_pred             HHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          469 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       469 ~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      .+.++|.++....+.......+  .+.++.|.....++++.+++.|...+..+.
T Consensus       419 ~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          419 ITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLE  470 (852)
T ss_dssp             HHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            9999999887532111111111  244566666666788999999988887664

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.71  E-value=1.8e-15  Score=162.61  Aligned_cols=371  Identities=10%  Similarity=0.084  Sum_probs=260.2

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLL  183 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L  183 (530)
                      +++...+..|+.++..+.....    .......++|.+..++..++ ..++..|+.+|..++.....  .... ..+|.+
T Consensus       214 d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l  286 (588)
T 1b3u_A          214 DEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--EITKTDLVPAF  286 (588)
T ss_dssp             CSCHHHHTTHHHHHHHHHHHSC----HHHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--ccchhHHHHHH
Confidence            4445555555555544432211    01122346677777765433 45556677888777743111  1112 468889


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647          184 IAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  262 (530)
Q Consensus       184 ~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~  262 (530)
                      +.++.+ +++.++..|+++|+.++.... ..+.......++|.+..++++++..++..++|+|..++..-.    .+.. 
T Consensus       287 ~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~----~~~~-  360 (588)
T 1b3u_A          287 QNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG----KDNT-  360 (588)
T ss_dssp             HHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC----HHHH-
T ss_pred             HHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----HhHH-
Confidence            999987 789999999999999986432 222223344577888899999999999999999999985321    1111 


Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      ...++|.+..++.+++++++..++.+|..+.......   .....+++.+..++ .+.+..++..++.+++.++..-...
T Consensus       361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~  436 (588)
T 1b3u_A          361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVE  436 (588)
T ss_dssp             HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCHH
Confidence            3468899999999999999999999999888632211   12235678888877 4678889999999999987532211


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                         ..      ...++|.+..++.+.+..+|..|+.+++.++......   .....++|.|..++.+.++.+|..|++++
T Consensus       437 ---~~------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l  504 (588)
T 1b3u_A          437 ---FF------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCI  504 (588)
T ss_dssp             ---GC------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             ---HH------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence               11      2358899999999999999999999999997642111   11234788999988999999999999999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHH
Q 009647          423 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF  502 (530)
Q Consensus       423 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L  502 (530)
                      +.++...             -....-..+++.|..++.++++.++..++++|..+....+.    . +.....++.|..+
T Consensus       505 ~~l~~~~-------------~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~-~~~~~~~p~l~~l  566 (588)
T 1b3u_A          505 NVLSEVC-------------GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----S-TLQSEVKPILEKL  566 (588)
T ss_dssp             HHHHHHH-------------HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----H-HHHHHHHHHHHHH
T ss_pred             HHHHHhc-------------CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch----h-hhHHHHHHHHHHH
Confidence            9997421             01122346889999999999999999999999999865421    1 2224556778888


Q ss_pred             hcCCcHHHHHHHHHHHHhhc
Q 009647          503 QFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       503 ~~~~~~~i~~~A~~il~~~f  522 (530)
                      ..+.+.+++..|...+...-
T Consensus       567 ~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          567 TQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             TTCSSHHHHHHHHHHHHHTT
T ss_pred             cCCCchhHHHHHHHHHHHhh
Confidence            89999999999999887653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=2.8e-14  Score=148.93  Aligned_cols=321  Identities=15%  Similarity=0.198  Sum_probs=245.8

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 009647           91 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        91 ~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~eA~~~L~nia~~~  169 (530)
                      .+++.|...+.  ++.-.+.+..|+..|+.+ ++. .+   ..+.++++|.|+..|+.+ ++.++...+..+|.++.+.+
T Consensus        21 etI~~L~~Rl~--~~tl~eDRR~Av~~Lk~~-sk~-y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~   93 (651)
T 3grl_A           21 ETIQKLCDRVA--SSTLLDDRRNAVRALKSL-SKK-YR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND   93 (651)
T ss_dssp             HHHHHHHHHHH--HCCSHHHHHHHHHHHHHT-TTT-TT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHh--hccchhHHHHHHHHHHHH-HHH-hH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence            45777777776  477899999999999998 432 22   356688999999999865 34566667888998877654


Q ss_pred             hh-----------------hHHhhc---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch-hHHHHHhc-CChhhhH
Q 009647          170 QE-----------------ETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQ-GALPPLA  227 (530)
Q Consensus       170 ~~-----------------~~~~i~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~-g~i~~L~  227 (530)
                      .+                 .++.++   +.++.|+.+|.+ ++..+|..++.+|..++...++ .++.++.. ++++.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             --------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            32                 223333   489999999987 7899999999999999987776 88888855 9999999


Q ss_pred             hhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH----HHHHHHHHHHHHhhcCCchhHHHH
Q 009647          228 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNVATSLL  303 (530)
Q Consensus       228 ~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~~~~~i  303 (530)
                      .+|.++...++..++-.|.+|+++.  ....+++.-.|+++.|+.++..+..    .+..+|+.+|.+|.+.+..+...+
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n--~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F  250 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSN--GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF  250 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCC--HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999899999999999999874  3445566667999999999986544    789999999999999888888889


Q ss_pred             HhcCchHHHHHHHhcCCCcc------chhh---hHHHHhhhhcCCcc-----ccc-hhcccCCCcchhhHHHHHHHhccC
Q 009647          304 VKSGVLQLLVERLATSNSLQ------LLIP---VLRSLGNLVAGDSS-----TIS-DVLVPGHGITDQVIAVLVKCLKSE  368 (530)
Q Consensus       304 ~~~g~l~~Lv~lL~~~~~~~------v~~~---al~~L~nl~~~~~~-----~~~-~~i~~g~~~~~~~l~~L~~lL~~~  368 (530)
                      .+.|.+++|..+|. .+...      ...+   ++.++.-++..+..     .-| .+.      +.|+++.|++++...
T Consensus       251 rEt~~i~~L~~LL~-~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~------~~g~l~~Ll~ll~~~  323 (651)
T 3grl_A          251 KEGSYIQRMKPWFE-VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF------QCGLLQQLCTILMAT  323 (651)
T ss_dssp             HHTTCGGGGGGGGC-CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH------HTTHHHHHHHHHTCS
T ss_pred             HHcCCHHHHHHHhC-CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH------HCCCHHHHHHHHccC
Confidence            99999999999884 33222      1223   56666666665332     112 333      457999999998765


Q ss_pred             --cHhHHHHHHHHHHHHhcCCHHHHHHHHhCC-----cHHHHHH----Hhc-CCChhHHHHHHHHHHHhcCC
Q 009647          369 --HRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-----ALALLLH----LLS-TSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       369 --~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~-----~l~~Li~----lL~-~~~~~v~~eA~~aL~nl~~~  428 (530)
                        ...++.+|+.+++.++.+++.....+.+..     ..|.++.    ++. ...+++|.+|+.++..+..+
T Consensus       324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~  395 (651)
T 3grl_A          324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK  395 (651)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence              468999999999999999977766666543     2234444    343 35689999999999998874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.70  E-value=3.1e-15  Score=160.65  Aligned_cols=375  Identities=13%  Similarity=0.118  Sum_probs=273.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCc
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL  180 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v  180 (530)
                      .+.++++.++..|+..+..+......    ......++|.+..++..++ +.++..|+.+|..++...+..  ... ..+
T Consensus       172 l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  244 (588)
T 1b3u_A          172 LCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--DLEALVM  244 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence            34678999999999999988654321    2334678899999987654 566666999999988543321  122 378


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                      |.+..++.+ +++.+|..|+.+|+.++....   .......+++.++.+++++++.++..++++|..++....+.. ...
T Consensus       245 ~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~  319 (588)
T 1b3u_A          245 PTLRQAAED-KSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC-REN  319 (588)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT-HHH
T ss_pred             HHHHHHccC-CCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh-hhh
Confidence            888888877 789999999999999985211   112334578999999999999999999999999997643221 110


Q ss_pred             HHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647          261 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       261 v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  340 (530)
                      .....++|.+..++.++++.++..++++|..++..-...   .....+++.+..++ .+.++.++..++.+++.+.....
T Consensus       320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~  395 (588)
T 1b3u_A          320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcC
Confidence            114588999999999999999999999999998521111   11234778888888 46778899999999999875432


Q ss_pred             cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          341 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       341 ~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                      ..  ...       ..++|.|..++.+.+..+|..++.+++.++.. ..+    .+...++|.+...|.+++..+|..|+
T Consensus       396 ~~--~~~-------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~  462 (588)
T 1b3u_A          396 IR--QLS-------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT  462 (588)
T ss_dssp             HH--HHH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             HH--HHH-------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            11  111       35889999999999999999999999998742 111    11123678899999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHH
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM  499 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L  499 (530)
                      .+++.++...    |     .+    .....+++.|..++..+++.++..+++++..+....+.     .......++.|
T Consensus       463 ~~l~~l~~~~----~-----~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-----~~~~~~~~~~l  524 (588)
T 1b3u_A          463 SNLKKLVEKF----G-----KE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-----DITTKHMLPTV  524 (588)
T ss_dssp             HHHHHHHHHH----C-----HH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHTHHHH
T ss_pred             HHHHHHHHHh----C-----ch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHH
Confidence            9999997531    1     01    12345788888988888999999999999988754221     11123456677


Q ss_pred             HHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          500 ERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       500 ~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      ..+..+++++|+..+...+..++.
T Consensus       525 ~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          525 LRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HhhCCCCCchHHHHHHHHHHHHHH
Confidence            777888899999998888877763

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=9e-15  Score=142.21  Aligned_cols=254  Identities=11%  Similarity=0.036  Sum_probs=195.0

Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      .+++.|+..|.+ +++.++..|+|+|+++..           .++++.|+.++.++++.++..++|+|..+....  .. 
T Consensus        23 ~~i~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~-   87 (280)
T 1oyz_A           23 LNDDELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC-   87 (280)
T ss_dssp             SCHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT-
T ss_pred             hhHHHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc-
Confidence            378999999987 789999999999999873           235888999999999999999999999986421  11 


Q ss_pred             hhHHHhhchHHHHH-HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          258 TELIKVDGLLDAIL-RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       258 ~~~v~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                           ...+++.|. .++.++++.++..++|+|+++....+..     ...+++.|+.+| .++++.++..|+++|+++.
T Consensus        88 -----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 -----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             -----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred             -----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence                 123556665 3567889999999999999998533222     124578888888 5888999999999999875


Q ss_pred             cCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      .                 ..+++.|+.++.++++.+|..|+|+|+++....+.         +++.|+.++.++++.+|.
T Consensus       157 ~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~  210 (280)
T 1oyz_A          157 D-----------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRI  210 (280)
T ss_dssp             -------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHH
T ss_pred             C-----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHH
Confidence            2                 13789999999999999999999999999544432         578899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchH
Q 009647          417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI  496 (530)
Q Consensus       417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl  496 (530)
                      .|+++|+++..                     ..+++.|+.+|.+++  +...+.++|..+-    .         ...+
T Consensus       211 ~A~~aL~~~~~---------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~----~---------~~~~  254 (280)
T 1oyz_A          211 EAIIGLSYRKD---------------------KRVLSVLCDELKKNT--VYDDIIEAAGELG----D---------KTLL  254 (280)
T ss_dssp             HHHHHHHHTTC---------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC----C---------GGGH
T ss_pred             HHHHHHHHhCC---------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC----c---------hhhh
Confidence            99999999842                     135678888887655  6677778877761    1         1345


Q ss_pred             HHHHHH-hcCCcHHHHHHHHHHHH
Q 009647          497 DAMERF-QFHENEDLRNMANGLVD  519 (530)
Q Consensus       497 ~~L~~L-~~~~~~~i~~~A~~il~  519 (530)
                      +.|..+ ..++++++...+...++
T Consensus       255 ~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          255 PVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHhh
Confidence            666554 45667777777766554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.59  E-value=1e-12  Score=137.33  Aligned_cols=414  Identities=14%  Similarity=0.126  Sum_probs=272.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCc----------------HHHHHH-cCCHHHHHHHhcCCCChHHH
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPP----------------IETALK-AGAIPVLVQCLAFGSPDEQL  155 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~----------------~~~ii~-~g~v~~Lv~lL~~~~~~~~~  155 (530)
                      +..+...++. ...|.+....++..|..+++....+.                .+.+++ .+.|+.|+.+|+.++ ...+
T Consensus        62 l~~li~~L~~-d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR  139 (651)
T 3grl_A           62 MEHLIHVLQT-DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVR  139 (651)
T ss_dssp             HHHHHHHHHS-CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHH
T ss_pred             HHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHH
Confidence            4455555542 23678888888899988877554321                134443 788999999998765 5677


Q ss_pred             HHHHHHHHHHhcCChhhHHhh-c---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647          156 LEAAWCLTNIAAGKQEETKAL-L---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  231 (530)
Q Consensus       156 ~eA~~~L~nia~~~~~~~~~i-~---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~  231 (530)
                      +.++.+|..++.+.++..+.. +   +++|.|+.+|.+ +.+.+|..++-.|.+++.++++.++.+.-.|+++.|+.++.
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            889999999998888754444 4   599999999998 68999999999999999999999999999999999999998


Q ss_pred             CCC----hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHH------HHHH---HHHHHHHhhcCC--
Q 009647          232 PNK----GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE------LTTE---VAWVVVYLSALS--  296 (530)
Q Consensus       232 ~~~----~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~------v~~~---a~~~L~~L~~~~--  296 (530)
                      ...    ..+..-|+-++.||.+.. + ....++.+.+++|.|..++..+++.      ...+   +..++.-|...+  
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N-~-sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~  296 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNN-N-SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP  296 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTC-H-HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcC-H-HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            643    478899999999999874 2 2345666889999999999754322      3333   444555555432  


Q ss_pred             ----chhHHHHHhcCchHHHHHHHhcCC-CccchhhhHHHHhhhhcCCccccchhccc--CCC-cchhhHHHHHHHhccC
Q 009647          297 ----NVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVLVP--GHG-ITDQVIAVLVKCLKSE  368 (530)
Q Consensus       297 ----~~~~~~i~~~g~l~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~~~~~i~~--g~~-~~~~~l~~L~~lL~~~  368 (530)
                          ..+...+.+.|+++.|++++..+. ...++..|+.+++.++.++......+...  +.. -..-++..|+.++.+.
T Consensus       297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~  376 (651)
T 3grl_A          297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNER  376 (651)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence                234567788999999999986332 45678899999999999886543332211  000 0122444455555544


Q ss_pred             -cHhHHHHHHHHHHHHhcCCHHHHHHHHhC----------CcH---HHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 009647          369 -HRVLKKEAAWVLSNIAAGSVEHKQLIHSS----------EAL---ALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG  434 (530)
Q Consensus       369 -~~~i~~~A~~~Lsnl~~~~~~~~~~li~~----------~~l---~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~  434 (530)
                       ...+|.+|+.++..+..++++....++..          +.+   ..|...+-+.|+-----|+.++.++..+.     
T Consensus       377 ~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n-----  451 (651)
T 3grl_A          377 QPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN-----  451 (651)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC-----
T ss_pred             ccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC-----
Confidence             46899999999999999887554445432          111   12444555566544445888888887642     


Q ss_pred             CchhHHHHHHHHHh-----------cCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcch-hHHHHhchHHHHHH
Q 009647          435 KPKLIQEHLVSLVG-----------RGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGT-KLVEREDGIDAMER  501 (530)
Q Consensus       435 ~~~~~~~~~~~l~~-----------~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~-~~i~~~ggl~~L~~  501 (530)
                       |    +....+..           .-.++.+..+|.. .|+++...-|..|..-|..+++  .. ..+.+...++.|..
T Consensus       452 -~----~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~--AV~dFL~~~s~l~~L~~  524 (651)
T 3grl_A          452 -A----TQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI--AVTHFLHNSANVPFLTG  524 (651)
T ss_dssp             -H----HHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH--HHHHHHHSTTHHHHHHH
T ss_pred             -H----HHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH--HHHHHHcCCchHHHHHH
Confidence             1    12122221           1124455555543 5666655555555555543332  23 34444456776654


Q ss_pred             Hh-c-CC--cHHHHHHHHHHHHhhcC
Q 009647          502 FQ-F-HE--NEDLRNMANGLVDKYFG  523 (530)
Q Consensus       502 L~-~-~~--~~~i~~~A~~il~~~f~  523 (530)
                      .. + ++  +.-|+-.+.-+|--.|.
T Consensus       525 ~i~~~~~~~~~lvqGL~a~LLGi~ye  550 (651)
T 3grl_A          525 QIAENLGEEEQLVQGLCALLLGISIY  550 (651)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCcchHHHHHHHHHHHHHHhh
Confidence            33 3 23  34567777666654433

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.59  E-value=4.2e-14  Score=158.95  Aligned_cols=386  Identities=14%  Similarity=0.186  Sum_probs=255.2

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCC---------------CCcH-HHHHHcCCHHHHHHHhcCC------CChHHHHHH
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFE---------------FPPI-ETALKAGAIPVLVQCLAFG------SPDEQLLEA  158 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~---------------~~~~-~~ii~~g~v~~Lv~lL~~~------~~~~~~~eA  158 (530)
                      ..+.+.+...+..|+..+..+.....               .+.. ...+ ..++|.++..|...      +....+..|
T Consensus       273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a  351 (861)
T 2bpt_A          273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHH
Confidence            35567888899999988887754321               1111 1122 55788999888742      223566678


Q ss_pred             HHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hhHHHHHhcCChhhhHhhcCCCChh
Q 009647          159 AWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGS  236 (530)
Q Consensus       159 ~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~lL~~~~~~  236 (530)
                      +.+|..++....   ..++ ..+|.+...+.+ +++.+++.|+++++.++.... ..-...+ ..+++.|+..+.++++.
T Consensus       352 ~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~  426 (861)
T 2bpt_A          352 GACLQLFAQNCG---NHILEPVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ  426 (861)
T ss_dssp             HHHHHHHHHHHG---GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHcc---HhHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence            999999985322   2223 467777788876 689999999999999996532 2111222 24788899999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCc-hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc----hhHHHHHhcCchHH
Q 009647          237 TVRTAAWALSNLIKGPDPKP-ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN----VATSLLVKSGVLQL  311 (530)
Q Consensus       237 ~~~~a~~~L~nL~~~~~~~~-~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~i~~~g~l~~  311 (530)
                      ++..++|+++.++....+.. ....  ...++|.++..+.++ +.++..++|+|.+++....    ......+ ..+++.
T Consensus       427 vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~  502 (861)
T 2bpt_A          427 VKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDG  502 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHH
Confidence            99999999999986421100 0112  347889999888765 8999999999999986311    1111111 345777


Q ss_pred             HHHHHhcC-CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC---------------cHhHHHH
Q 009647          312 LVERLATS-NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---------------HRVLKKE  375 (530)
Q Consensus       312 Lv~lL~~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~---------------~~~i~~~  375 (530)
                      |+..+... .++.++..++.+++.++..........+.       .++|.++..+...               ...++..
T Consensus       503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-------~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-------SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-------HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-------HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            88877422 23678889999999999776554444432       5777777776531               3468889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647          376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  454 (530)
Q Consensus       376 A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  454 (530)
                      +++++++++......+....+ .+++.++..+++.+. .++..+++++++++...    |.     +...++-  .+++.
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~----~~-----~~~~~l~--~i~~~  643 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASL----GK-----GFEKYLE--TFSPY  643 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH----GG-----GGHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH----hh-----hHHHHHH--HHHHH
Confidence            999999998754433322222 477888888888777 89999999999997532    10     1112222  27788


Q ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCc--HHHHHHHHHHH
Q 009647          455 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLV  518 (530)
Q Consensus       455 L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~--~~i~~~A~~il  518 (530)
                      +...|..++++++..++.++..++...+. .....+  ...++.+.....+++  .+++..+...+
T Consensus       644 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          644 LLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             HHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHhch-hccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            99999888888999999999998876542 111111  123344433333433  66776665444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.57  E-value=7.8e-13  Score=142.41  Aligned_cols=287  Identities=14%  Similarity=0.080  Sum_probs=186.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhH-Hhh-cC
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET-KAL-LP  178 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~-~~i-~~  178 (530)
                      +.+.++++.++..|+.++.++....++    .+.+.+++|.+..+|...+ +.++..|+++|..++..+++.. ..+ .+
T Consensus       128 ~~L~d~~~~VRk~A~~al~~i~~~~p~----~~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~~l~~~  202 (591)
T 2vgl_B          128 KCLKDEDPYVRKTAAVCVAKLHDINAQ----MVEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLLDLNPQ  202 (591)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHHSSCC----CHHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhhChh----hcccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence            455689999999999999999764432    1344688999999998544 6787889999999997765331 111 13


Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC--CCCc
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP--DPKP  256 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~  256 (530)
                      .++.|+..+.. .++..+...+.+|++++...+...     ..+++.+..++++.+..++..|+|++.++...-  ++..
T Consensus       203 ~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~  276 (591)
T 2vgl_B          203 NINKLLTALNE-CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY  276 (591)
T ss_dssp             HHHHHHHHHHH-CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred             HHHHHHHcCCC-CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence            57777877776 678888999999999986544332     345778888999999999999999999997531  2222


Q ss_pred             hhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          257 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       257 ~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                      ....  ...+.+.|+.++. ++++++..++.+|..+....++....     .+..+.. + .+++..++..|+..+.+++
T Consensus       277 ~~~~--~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~~-~-~~d~~~Ir~~al~~L~~l~  346 (591)
T 2vgl_B          277 YNML--LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFFV-K-YNDPIYVKLEKLDIMIRLA  346 (591)
T ss_dssp             HHHH--HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTSC-C-TTSCHHHHHHHHHHHHHTC
T ss_pred             HHHH--HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhhee-c-cCChHHHHHHHHHHHHHHC
Confidence            2211  2466677777664 78899999999999998643322211     1111111 1 1233556677777777766


Q ss_pred             cCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHH
Q 009647          337 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK  416 (530)
Q Consensus       337 ~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~  416 (530)
                      ..+.  .           ..+++.|..++.+.+..+|++++++|++++...+.....     .++.|++++.+....++.
T Consensus       347 ~~~n--v-----------~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~-----~v~~Ll~ll~~~~~~v~~  408 (591)
T 2vgl_B          347 SQAN--I-----------AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQTKVNYVVQ  408 (591)
T ss_dssp             CSST--H-----------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHHTCCHHHHH
T ss_pred             Chhh--H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH-----HHHHHHHHHcccchHHHH
Confidence            4332  1           135666666666666777777777777776655432222     334555555555555555


Q ss_pred             HHHHHHHHhc
Q 009647          417 EVAYVLGNLC  426 (530)
Q Consensus       417 eA~~aL~nl~  426 (530)
                      +++.++.++.
T Consensus       409 e~i~~l~~ii  418 (591)
T 2vgl_B          409 EAIVVIRDIF  418 (591)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.57  E-value=5.1e-13  Score=144.46  Aligned_cols=356  Identities=13%  Similarity=0.095  Sum_probs=249.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      +.+|.+.++   +++...+..++..+-.+...+.+-       .-+.+-.+.++.+.+ ...++-+..++.+++..+++.
T Consensus        36 ~~~ir~~l~---~~~~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~  104 (618)
T 1w63_A           36 CAAIRSSFR---EEDNTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDV  104 (618)
T ss_dssp             HHHHHHHHT---TTCTTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHhh---CCCHHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHH
Confidence            445555554   667777888887777765555433       235666778888655 556666778888888776543


Q ss_pred             HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                      ..   -++..|.+-|.+ +++.++..|+++|++|..  ++.     ....++.+.+++.++++.+++.|++++.++++..
T Consensus       105 ~~---l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~~~-----~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~  173 (618)
T 1w63_A          105 HL---LMTNCIKNDLNH-STQFVQGLALCTLGCMGS--SEM-----CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV  173 (618)
T ss_dssp             HH---HHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--HHH-----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred             HH---HHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence            22   367788888887 789999999999999984  332     2356788999999999999999999999999753


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc--------------
Q 009647          253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------  318 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~--------------  318 (530)
                       |    +.+  .++++.+..++.+.|+.++..|+++|..++..+++....+  ...++.++.+|..              
T Consensus       174 -p----~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~  244 (618)
T 1w63_A          174 -P----ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSG  244 (618)
T ss_dssp             -G----GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSS
T ss_pred             -h----HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccC
Confidence             3    232  3788889999999999999999999999997544322222  3678888877742              


Q ss_pred             CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh------ccCcHhHHHHHHHHHHHHhcCCHHHHH
Q 009647          319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL------KSEHRVLKKEAAWVLSNIAAGSVEHKQ  392 (530)
Q Consensus       319 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL------~~~~~~i~~~A~~~Lsnl~~~~~~~~~  392 (530)
                      ..++..+..++++|+.++..++.....           +++.|..++      ++.+..+..+|++++.++.. .+....
T Consensus       245 ~~~~~~q~~il~~L~~l~~~~~~~~~~-----------~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~  312 (618)
T 1w63_A          245 ISDPFLQVRILRLLRILGRNDDDSSEA-----------MNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV  312 (618)
T ss_dssp             SSCHHHHHHHHHHHHHHTTTCHHHHHT-----------THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCCHHHHHH-----------HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH
Confidence            246777888999999998765433222           344444444      23456899999999999854 332222


Q ss_pred             HHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHH
Q 009647          393 LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ  472 (530)
Q Consensus       393 ~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~  472 (530)
                           .+++.|..++.++++.+|..|+.+|..++..             + ..++ ......++..|.++|..+...+++
T Consensus       313 -----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-------------~-p~~~-~~~~~~i~~~l~d~d~~Ir~~ale  372 (618)
T 1w63_A          313 -----LAINILGRFLLNNDKNIRYVALTSLLKTVQT-------------D-HNAV-QRHRSTIVDCLKDLDVSIKRRAME  372 (618)
T ss_dssp             -----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH-------------H-HHHH-GGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh-------------C-HHHH-HHHHHHHHHHccCCChhHHHHHHH
Confidence                 3567888889999999999999999999742             1 1222 235667888899999999999999


Q ss_pred             HHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647          473 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  520 (530)
Q Consensus       473 ~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~  520 (530)
                      .|..+...  .+ ....+      +.|.....+.+.+++..+...|.+
T Consensus       373 lL~~l~~~--~n-v~~iv------~eL~~~l~~~d~e~r~~~v~~I~~  411 (618)
T 1w63_A          373 LSFALVNG--NN-IRGMM------KELLYFLDSCEPEFKADCASGIFL  411 (618)
T ss_dssp             HHHHHCCS--SS-THHHH------HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHccc--cc-HHHHH------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99888642  11 11222      333333344566777666544433

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.55  E-value=7.7e-14  Score=156.85  Aligned_cols=344  Identities=13%  Similarity=0.183  Sum_probs=232.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc-CCcHHHHH
Q 009647          108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIA  185 (530)
Q Consensus       108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~-~~v~~L~~  185 (530)
                      ...+..|...+..+.......    ++ ..++|.+.+.+.+.+ ...+..|+++++.++.+.. +.....+ ..+|.++.
T Consensus       345 ~~~r~~a~~~L~~l~~~~~~~----~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~  418 (861)
T 2bpt_A          345 WNVSMSAGACLQLFAQNCGNH----IL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN  418 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHccHh----HH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            456777777777764322111    11 234566666666544 4455569999999997753 4444444 58899999


Q ss_pred             hhcCCCCHHHHHHHHHHHHhhcCCCchh-HHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC---CCchhhHH
Q 009647          186 HLGEKSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD---PKPATELI  261 (530)
Q Consensus       186 lL~~~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~---~~~~~~~v  261 (530)
                      .+.+ +++.++..++|+|++++...... ...-.-..+++.++..+.++ +.++..++|+|.+++....   +...... 
T Consensus       419 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~-  495 (861)
T 2bpt_A          419 LMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF-  495 (861)
T ss_dssp             GGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-
T ss_pred             HcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH-
Confidence            9987 78999999999999998532110 00001123567788888765 8999999999999987522   1211222 


Q ss_pred             HhhchHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC--------------CCccch
Q 009647          262 KVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS--------------NSLQLL  325 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~--------------~~~~v~  325 (530)
                       ...+++.|++++.+.|  +.++..+++++..++..........+. .+++.++..|...              ....++
T Consensus       496 -~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~  573 (861)
T 2bpt_A          496 -YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ  573 (861)
T ss_dssp             -HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence             2467888888888544  689999999999999754443332222 4667777766421              123456


Q ss_pred             hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcH-hHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH
Q 009647          326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL  404 (530)
Q Consensus       326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~-~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li  404 (530)
                      ..++.+|++++..........+       ..+++.+..++.+.+. .++..+++++++++..........+. .++|.|.
T Consensus       574 ~~~~~~l~~l~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~  645 (861)
T 2bpt_A          574 SNILTVLAAVIRKSPSSVEPVA-------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLL  645 (861)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGH-------HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHH
Confidence            7899999999876554333333       3688899999988777 89999999999998653333333333 2788999


Q ss_pred             HHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC--HHHHHHHHHHHHHHHccC
Q 009647          405 HLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--IEAARLGLQFMELVLRGM  481 (530)
Q Consensus       405 ~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--~~i~~~~L~~L~~il~~~  481 (530)
                      ..+.+.++.++..|+++++.++...    |.  .+..++     ..+++.++..|.+.+  +.++..++.++..++...
T Consensus       646 ~~l~~~~~~vr~~a~~~l~~l~~~~----~~--~~~~~~-----~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~  713 (861)
T 2bpt_A          646 KALNQVDSPVSITAVGFIADISNSL----EE--DFRRYS-----DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHCTTSHHHHHHHHHHHHHHHHT----GG--GGHHHH-----HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHh----ch--hccchH-----HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence            9998888899999999999998642    11  111122     345677888887754  788888999998887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.55  E-value=4.2e-13  Score=139.48  Aligned_cols=388  Identities=12%  Similarity=0.100  Sum_probs=261.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      |.+++....++|.+.+.+|...|.++-. . +       ..+.++.|+.+|...+ ++.++.-|+.+|.|+.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~-~-~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAV-E-N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHH-H-H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHh-h-C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            4456666678999999999999988632 1 0       1346677888887653 456666699999998754311100


Q ss_pred             -------hhc------CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHH
Q 009647          175 -------ALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVR  239 (530)
Q Consensus       175 -------~i~------~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~  239 (530)
                             ..+      ..-..++..|.+ +++.+ .+++.+++.|+.......   .-.+.+|.|+..+.++  +..++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHH
Confidence                   001      133457777776 56678 899999999986321100   1135788888888888  899999


Q ss_pred             HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--CHHHHHHHHHHHHHhhcCCchhHH-HHHhcCchHHHHHHH
Q 009647          240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVERL  316 (530)
Q Consensus       240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~Lv~lL  316 (530)
                      .++++|..++....+......  ...+++.+..++.++  ++.++..+++++.++...-.+... .....-+++.+...+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~  226 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT  226 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            999999999964222211122  246888899999887  789999999999987643221110 011111355555555


Q ss_pred             hcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH-------
Q 009647          317 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE-------  389 (530)
Q Consensus       317 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~-------  389 (530)
                       .+.++.++..++++|+.++..........+.      ..+++.+...+.+.++.++..|++.+++++.....       
T Consensus       227 -~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~  299 (462)
T 1ibr_B          227 -QCPDTRVRVAALQNLVKIMSLYYQYMETYMG------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  299 (462)
T ss_dssp             -TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             4678889999999999999765543333331      15888888888888999999999999998753200       


Q ss_pred             --------------HHHHHHhCCcHHHHHHHhcCC-------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          390 --------------HKQLIHSSEALALLLHLLSTS-------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       390 --------------~~~~li~~~~l~~Li~lL~~~-------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                                    .++..+ ..++|.++..+...       +..++..|+.+|..++...    +.     ...     
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~----~~-----~~~-----  364 (462)
T 1ibr_B          300 AAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-----DIV-----  364 (462)
T ss_dssp             TTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----TT-----THH-----
T ss_pred             ccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc----cH-----HHH-----
Confidence                          111111 23677777777532       3578999999999997532    10     111     


Q ss_pred             cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       449 ~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      ..+++.+...|.+.++.++..++.+|..+...+........+  ...++.|..+..++++.|+..|...|.+|..
T Consensus       365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            235677778888999999999999999998654311111112  3567778888889999999999998888754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.52  E-value=5.3e-13  Score=150.28  Aligned_cols=382  Identities=16%  Similarity=0.155  Sum_probs=230.8

Q ss_pred             CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-hhHHhhc-CCcHHHH
Q 009647          107 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLI  184 (530)
Q Consensus       107 d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~-~~~~~i~-~~v~~L~  184 (530)
                      +...+..|...+..+......    .++ ..++|.+...|.+.+ ...+..|+++|+.++.+.. +.....+ ..+|.++
T Consensus       341 ~~~~r~~a~~~l~~l~~~~~~----~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~  414 (876)
T 1qgr_A          341 DWNPCKAAGVCLMLLATCCED----DIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI  414 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHHGG----GGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCcH----hhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            345666777777666432211    112 245666667776544 5565669999999998764 3333333 5899999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHhhcCCCchhH-HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC----------
Q 009647          185 AHLGEKSSSPVAEQCAWALGNVAGEGEEFR-NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD----------  253 (530)
Q Consensus       185 ~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~----------  253 (530)
                      ..|.+ +++.|+..|+|+|++++...+..- ..-.-..+++.|+..+.++ +.++..++|+|.+++....          
T Consensus       415 ~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~  492 (876)
T 1qgr_A          415 ELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQE  492 (876)
T ss_dssp             HHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCC
T ss_pred             HHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            99987 789999999999999997533210 0001124567778888764 8899999999999986411          


Q ss_pred             ---CCchhhHHHhhchHHHHHHHhccCC---HHHH---------------------------------------------
Q 009647          254 ---PKPATELIKVDGLLDAILRHLKRAD---EELT---------------------------------------------  282 (530)
Q Consensus       254 ---~~~~~~~v~~~~~l~~L~~lL~~~d---~~v~---------------------------------------------  282 (530)
                         .......  ...++|.|..++...+   ..++                                             
T Consensus       493 ~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  570 (876)
T 1qgr_A          493 EPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS  570 (876)
T ss_dssp             CCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred             cccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence               0001111  2356666666665331   2333                                             


Q ss_pred             -----------HHHHHHHHHhhcCCc-hhHHHHHhcCchHHHHHHHhcCCC--ccchhhhHHHHhhhhcCCccccchhcc
Q 009647          283 -----------TEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLATSNS--LQLLIPVLRSLGNLVAGDSSTISDVLV  348 (530)
Q Consensus       283 -----------~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~  348 (530)
                                 ..+++++..++..-. ...... -..+++.++..+. +..  ..++..++.+++.++.........++ 
T Consensus       571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~l~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-  647 (876)
T 1qgr_A          571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI-SDVVMASLLRMFQ-STAGSGGVQEDALMAVSTLVEVLGGEFLKYM-  647 (876)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT-HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGH-
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH-HHHHHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHHhhHHHHH-
Confidence                       344445544444222 111111 1235566666663 332  36788999999999875444333333 


Q ss_pred             cCCCcchhhHHHHHHHhccC-cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC--CChhHHHHHHHHHHHh
Q 009647          349 PGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNL  425 (530)
Q Consensus       349 ~g~~~~~~~l~~L~~lL~~~-~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl  425 (530)
                            ..++|.+...+.+. ++.+|..|+++++.|+......+...++ .+++.++..+.+  .+.+++..++++++++
T Consensus       648 ------~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i  720 (876)
T 1qgr_A          648 ------EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDI  720 (876)
T ss_dssp             ------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHH
Confidence                  25889999999876 7899999999999998643333333333 478888898877  4578999999999999


Q ss_pred             cCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC----CH-------HHHHHHHHHHHHHHccCCCC---------c
Q 009647          426 CVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA----DI-------EAARLGLQFMELVLRGMPNH---------E  485 (530)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~----d~-------~i~~~~L~~L~~il~~~~~~---------~  485 (530)
                      +...   ++.      ...++  ..+++.+...+...    |+       .+...+++++..++......         .
T Consensus       721 ~~~~---g~~------~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~  789 (876)
T 1qgr_A          721 ALAI---GGE------FKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML  789 (876)
T ss_dssp             HHHH---GGG------GGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred             HHHh---chh------HHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence            7521   011      01111  23556666666543    22       56677788888777643211         1


Q ss_pred             chhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHHHhh
Q 009647          486 GTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKY  521 (530)
Q Consensus       486 ~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il~~~  521 (530)
                      ....+.  ..++.+..+..++  ++.++..|...|..+
T Consensus       790 ~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l  825 (876)
T 1qgr_A          790 VQPRVE--FILSFIDHIAGDEDHTDGVVACAAGLIGDL  825 (876)
T ss_dssp             SGGGHH--HHHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            111111  1223444444555  788998887766654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.50  E-value=1.1e-12  Score=120.72  Aligned_cols=183  Identities=22%  Similarity=0.272  Sum_probs=157.4

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ..+.++++|.+ +++.++..|+++|+.+..           ...++.|+.++.++++.++..++++|..+..        
T Consensus        15 ~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           15 KVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             chHHHHHHhcC-CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            67899999988 899999999999998764           2468999999999999999999999998851        


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                           ...++.|..++.++++.++..++++|..+..           ...++.|+.+| .++++.++..|+++|+++.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 2567889999999999999999999999863           24678888888 57888999999999999842 


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  418 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA  418 (530)
                                      ...++.|..++.++++.+|..|+++|+.+  +.+.         .++.|..++.++++.++..|
T Consensus       137 ----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~A  189 (201)
T 3ltj_A          137 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVA  189 (201)
T ss_dssp             ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHCCHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCCCHHHHHHH
Confidence                            24889999999999999999999999999  3322         67888899999999999999


Q ss_pred             HHHHHHhc
Q 009647          419 AYVLGNLC  426 (530)
Q Consensus       419 ~~aL~nl~  426 (530)
                      .++|.++-
T Consensus       190 ~~aL~~l~  197 (201)
T 3ltj_A          190 VNYLETHK  197 (201)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHH
Confidence            99999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=4.9e-13  Score=124.08  Aligned_cols=185  Identities=21%  Similarity=0.252  Sum_probs=157.2

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      .++.|+.+|.+ +++.++..|+++|+.+..           ..+++.|+.++.++++.++..++++|+.+..        
T Consensus        20 ~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           20 KVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            78999999987 899999999999999764           2578999999999999999999999998852        


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                           ...++.|..++.++++.++..++++|..+..           .+.++.|+.+| .++++.++..|+.+|+++.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 2567889999999999999999999999863           24678888888 58889999999999999831 


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV  418 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA  418 (530)
                                      ...++.|..++.++++.+|..|+++|+.+..  +         .+++.|..++.++++.||..|
T Consensus       142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A  194 (211)
T 3ltm_A          142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVA  194 (211)
T ss_dssp             ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHH
Confidence                            2478899999999999999999999999942  2         267788999999999999999


Q ss_pred             HHHHHHhcCC
Q 009647          419 AYVLGNLCVS  428 (530)
Q Consensus       419 ~~aL~nl~~~  428 (530)
                      .++|.++...
T Consensus       195 ~~aL~~~~~~  204 (211)
T 3ltm_A          195 VNYLETHKSF  204 (211)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHhcCCC
Confidence            9999999754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.49  E-value=3.4e-12  Score=143.69  Aligned_cols=368  Identities=11%  Similarity=0.142  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcC
Q 009647           92 AVEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAG  168 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~--d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~  168 (530)
                      .++.+.+.+.   ++  ++..+..|+..+..+...-. +....-.-..+++.+...+..++ +..++..|+++|.+++..
T Consensus       129 ll~~l~~~l~---~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          129 LIPQLVANVT---NPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             HHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4455555554   67  88999999999998865321 11100011346777888887653 466777899999998854


Q ss_pred             ChhhHH--hhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHH
Q 009647          169 KQEETK--ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWAL  245 (530)
Q Consensus       169 ~~~~~~--~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L  245 (530)
                      -.....  ... ..++.+..++.+ ++.+++..|+++|+.++...+..-...+...+++.++..+.+.+..++..+++++
T Consensus       205 ~~~~~~~~~~~~~il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l  283 (876)
T 1qgr_A          205 TKANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW  283 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            332211  011 246677777765 7899999999999999975544323334446788888888888899999999999


Q ss_pred             HHhhcCC---------------CC-CchhhHH--HhhchHHHHHHHhcc-------CCHHHHHHHHHHHHHhhcCCchhH
Q 009647          246 SNLIKGP---------------DP-KPATELI--KVDGLLDAILRHLKR-------ADEELTTEVAWVVVYLSALSNVAT  300 (530)
Q Consensus       246 ~nL~~~~---------------~~-~~~~~~v--~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~L~~~~~~~~  300 (530)
                      .+++...               .| .......  ....++|.++..+..       ++..++..+..+|..++....+. 
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-  362 (876)
T 1qgr_A          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-
T ss_pred             HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-
Confidence            9887531               00 0111111  124677888888753       23468889999999988632221 


Q ss_pred             HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc-cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHH
Q 009647          301 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV  379 (530)
Q Consensus       301 ~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~  379 (530)
                        ++ ..+++.+...+ .+.++.++..|+.++|.++.+.. ......+       ..++|.++..+.++++.+|..|+|+
T Consensus       363 --~~-~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-------~~~l~~l~~~l~d~~~~vr~~a~~~  431 (876)
T 1qgr_A          363 --IV-PHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-------IQAMPTLIELMKDPSVVVRDTAAWT  431 (876)
T ss_dssp             --GH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             --hH-HHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence              11 23556666666 46788899999999999997764 3232333       3689999999999999999999999


Q ss_pred             HHHHhcCCHHHH--HHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC-----CC---CchhHHHHHHHHHhc
Q 009647          380 LSNIAAGSVEHK--QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG-----EG---KPKLIQEHLVSLVGR  449 (530)
Q Consensus       380 Lsnl~~~~~~~~--~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~-----~~---~~~~~~~~~~~l~~~  449 (530)
                      +++++...+...  ...+ ..+++.|+..+.+. +.++..|+|+|.+++......     .+   .+..+..+.     .
T Consensus       432 l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----~  504 (876)
T 1qgr_A          432 VGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-----E  504 (876)
T ss_dssp             HHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-----H
T ss_pred             HHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-----H
Confidence            999987543211  0111 13678888888775 889999999999998531000     00   000000011     2


Q ss_pred             CChHHHHhhhccC---CHHHHHHHHHHHHHHHccCCC
Q 009647          450 GCLSGFIDLVRSA---DIEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       450 g~i~~L~~lL~~~---d~~i~~~~L~~L~~il~~~~~  483 (530)
                      .+++.|+.++...   +..+...+++++..+....+.
T Consensus       505 ~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~  541 (876)
T 1qgr_A          505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK  541 (876)
T ss_dssp             HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence            4677788888764   346777889999988876653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.48  E-value=3.6e-13  Score=139.97  Aligned_cols=353  Identities=13%  Similarity=0.132  Sum_probs=235.3

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCCC----------cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647          106 GAMQKRVNALRELRRLLSRFEFP----------PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  175 (530)
Q Consensus       106 ~d~~~~~~a~~~lr~lls~~~~~----------~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~  175 (530)
                      .++..+..|+..|++++.....+          .+..-....+-..|+..|.+++. .+ ..++.++..|+...... ..
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~-~v-~~~~~~i~~ia~~~~~~-~~  125 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY-RP-SSASQCVAGIACAEIPV-NQ  125 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS-SS-CSHHHHHHHHHHHHGGG-TC
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc-hh-hHHHHHHHHHHHHhccc-cc
Confidence            47889999999999998643110          00111223345567777876553 45 66899999998643211 11


Q ss_pred             hcCCcHHHHHhhcCCC-CHHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcC
Q 009647          176 LLPALPLLIAHLGEKS-SSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKG  251 (530)
Q Consensus       176 i~~~v~~L~~lL~~~~-~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~  251 (530)
                      .-+.+|.|+..+.+.+ ++.+++.|+++|+.++.+. +..-.... ..+++.++.++.++  +..++..+++++.++...
T Consensus       126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (462)
T 1ibr_B          126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (462)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            2258899999998732 8899999999999999643 22111111 23677888888877  789999999999997643


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHH
Q 009647          252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS  331 (530)
Q Consensus       252 ~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~  331 (530)
                      -......... ..-+++.+...+.+++++++..++++|..++....+.....+..++++.++..+ .+.++.++..|+.+
T Consensus       205 ~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~  282 (462)
T 1ibr_B          205 TKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEF  282 (462)
T ss_dssp             THHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHH
T ss_pred             HHHhhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHH
Confidence            1100000010 122477777778888999999999999999975443322222225677777777 46778899999999


Q ss_pred             HhhhhcCCc-----------------cccchhcccCCCcchhhHHHHHHHhccC-------cHhHHHHHHHHHHHHhcCC
Q 009647          332 LGNLVAGDS-----------------STISDVLVPGHGITDQVIAVLVKCLKSE-------HRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       332 L~nl~~~~~-----------------~~~~~~i~~g~~~~~~~l~~L~~lL~~~-------~~~i~~~A~~~Lsnl~~~~  387 (530)
                      ++.++....                 .....++..   .-..++|.++..+...       +..+|..|+.+|..++...
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~  359 (462)
T 1ibr_B          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG---ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH---HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcccccccCCCccchhHHHHHH---HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence            998875420                 000001100   0024677777777532       3578999999999997654


Q ss_pred             HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647          388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  467 (530)
Q Consensus       388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~  467 (530)
                      ++   .++. .++|.+...+.+.+..+|..|+++|+.++.+..     +.    .+... -..+++.++..|.++++.++
T Consensus       360 ~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~----~~~~~-l~~~~~~l~~~l~d~~~~Vr  425 (462)
T 1ibr_B          360 ED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----PS----QLKPL-VIQAMPTLIELMKDPSVVVR  425 (462)
T ss_dssp             TT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----TT----TTCTT-TTTHHHHHHHGGGCSCHHHH
T ss_pred             cH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-----HH----HHHHH-HHHHHHHHHHHhcCCCHHHH
Confidence            32   2222 367788888899999999999999999997532     10    01111 14688999999999999999


Q ss_pred             HHHHHHHHHHHccC
Q 009647          468 RLGLQFMELVLRGM  481 (530)
Q Consensus       468 ~~~L~~L~~il~~~  481 (530)
                      ..++++|.++....
T Consensus       426 ~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          426 DTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.46  E-value=1e-11  Score=145.15  Aligned_cols=397  Identities=10%  Similarity=0.117  Sum_probs=264.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647           95 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus        95 ~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      .+.+++..+.++|.+.+..|+..|.+.+..... ..+.-....+++.+++.|.+. ++.++..|+.+|.+++.+-++  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--~   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--Y   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--H
Confidence            455667777899999999999999988654321 111112235788899999854 467777799999999976443  2


Q ss_pred             hhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH-----HHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHh
Q 009647          175 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR-----NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNL  248 (530)
Q Consensus       175 ~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-----~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL  248 (530)
                      .+-..++.++..|.+ +++.+|..|+.+|+.++.......     ..-.-..++|.|+..+. +++..++..++.+|..+
T Consensus        83 ~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            222467888888877 677899999999999985433210     01112346889999998 57899999999999999


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      +....... ...  ...+++.++..+.++++.++..++.+|..++...++.   + -..+++.++..|....+..++..+
T Consensus       162 ~~~~~~~l-~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          162 LSRQGGLL-VNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             HHHTCSSC-TTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHhHhHH-HHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHH
Confidence            85321111 112  2477888888898889999999999999999754322   1 234678888888654455788899


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS  408 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~  408 (530)
                      +.+++.++..........+       ..++|.+...+.+.++.+|..+++++..++...++.+...+. .++|.++..+.
T Consensus       235 ~~~l~~l~~~~~~~~~~~l-------~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~  306 (1230)
T 1u6g_C          235 IQCIAAISRQAGHRIGEYL-------EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLT  306 (1230)
T ss_dssp             HHHHHHHHHHSSGGGTTSC-------TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCC
T ss_pred             HHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhC
Confidence            9999999875544333333       369999999999888999999999999998754332222221 24455544442


Q ss_pred             C-------------------------------------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647          409 T-------------------------------------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  451 (530)
Q Consensus       409 ~-------------------------------------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  451 (530)
                      .                                     ...++|+.|+.++..++...      |.    ..... -..+
T Consensus       307 ~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~------~~----~~~~~-~~~l  375 (1230)
T 1u6g_C          307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR------HE----MLPEF-YKTV  375 (1230)
T ss_dssp             CC------------------------------------CTTHHHHHHHHHHHHHHTTC------CT----THHHH-HTTT
T ss_pred             CCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc------hh----HHHHH-HHHH
Confidence            1                                     11347888999999988631      10    11111 1456


Q ss_pred             hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCc-------------ch-hHHHH--hchHHHHHHHhcCCcHHHHHHHH
Q 009647          452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE-------------GT-KLVER--EDGIDAMERFQFHENEDLRNMAN  515 (530)
Q Consensus       452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~-------------~~-~~i~~--~ggl~~L~~L~~~~~~~i~~~A~  515 (530)
                      ++.++..+...++.++..++.++..++.......             .+ ..+..  ...++.+.....++++.++..+.
T Consensus       376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~  455 (1230)
T 1u6g_C          376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF  455 (1230)
T ss_dssp             HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence            7888888888888899889998888876422100             00 11111  12334455556678888887777


Q ss_pred             HHHHhhc
Q 009647          516 GLVDKYF  522 (530)
Q Consensus       516 ~il~~~f  522 (530)
                      ..+..+.
T Consensus       456 ~~L~~l~  462 (1230)
T 1u6g_C          456 NMLTELV  462 (1230)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.46  E-value=1.1e-11  Score=134.12  Aligned_cols=367  Identities=11%  Similarity=0.062  Sum_probs=202.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  181 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~  181 (530)
                      .+.+.++.++..|+.++.++....  |.   .+ .+.++.+..+|...+ +.++..|+++|..++..+++....+...+|
T Consensus       150 ~L~~~~~~VRk~A~~al~~l~~~~--p~---~v-~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~  222 (618)
T 1w63_A          150 LLKTSNSYLRKKAALCAVHVIRKV--PE---LM-EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLAHFRKLVP  222 (618)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHC--GG---GG-GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHHHHHTTHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHC--hH---HH-HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            334788888888888888886543  22   12 267777777886544 677778999999998776543334446788


Q ss_pred             HHHHhhcC--------------CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC------CCChhHHHHH
Q 009647          182 LLIAHLGE--------------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------PNKGSTVRTA  241 (530)
Q Consensus       182 ~L~~lL~~--------------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~------~~~~~~~~~a  241 (530)
                      .++.+|.+              .+++-.+..++.+|+.++..++...+     ..++.|..++.      +.+..++..|
T Consensus       223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea  297 (618)
T 1w63_A          223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYET  297 (618)
T ss_dssp             HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHH
Confidence            88877652              24678888888999998876554322     22333333332      1234556666


Q ss_pred             HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC
Q 009647          242 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS  321 (530)
Q Consensus       242 ~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~  321 (530)
                      ++++..+...    +  ..  ...+++.|..++.+++++++..++.+|..++...+.   .+  ......++..+ .+++
T Consensus       298 ~~~i~~l~~~----~--~l--~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~--~~~~~~i~~~l-~d~d  363 (618)
T 1w63_A          298 VLTIMDIKSE----S--GL--RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AV--QRHRSTIVDCL-KDLD  363 (618)
T ss_dssp             HHHHHHSCCC----H--HH--HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HH--GGGHHHHHHGG-GSSC
T ss_pred             HHHHHhcCCC----H--HH--HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HH--HHHHHHHHHHc-cCCC
Confidence            6666655311    1  11  124455555666656666666666666666542221   11  12334444444 3455


Q ss_pred             ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH----HHHHH----
Q 009647          322 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV----EHKQL----  393 (530)
Q Consensus       322 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~----~~~~~----  393 (530)
                      ..++..|+.+|..++...+.  .           .+++.|...+.+.+..+|..++.+|+.++...+    ..+..    
T Consensus       364 ~~Ir~~alelL~~l~~~~nv--~-----------~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~l  430 (618)
T 1w63_A          364 VSIKRRAMELSFALVNGNNI--R-----------GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV  430 (618)
T ss_dssp             HHHHHHHHHHHHHHCCSSST--H-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHcccccH--H-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            55556666666665543321  0           234444555545555555555555555554210    01110    


Q ss_pred             ------------------HHh------CCcHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCC--CC-CchhHHHHHH
Q 009647          394 ------------------IHS------SEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEG--EG-KPKLIQEHLV  444 (530)
Q Consensus       394 ------------------li~------~~~l~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~--~~-~~~~~~~~~~  444 (530)
                                        ++.      ..+++.|+..+.+  ....+.+.++|+|+..+..-..+  .+ .|.       
T Consensus       431 L~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~-------  503 (618)
T 1w63_A          431 LTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI-------  503 (618)
T ss_dssp             HHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC-------
T ss_pred             HHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc-------
Confidence                              000      0134556666653  23344556888888775310000  00 000       


Q ss_pred             HHHhcCChHHHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          445 SLVGRGCLSGFIDLVR--SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       445 ~l~~~g~i~~L~~lL~--~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      ......+++.|..+++  ..++.++..++.++..+....+.  ....+     ...|.....+.|.+|+++|...+.-+
T Consensus       504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll  575 (618)
T 1w63_A          504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRI-----KKVVSIYGSSIDVELQQRAVEYNALF  575 (618)
T ss_dssp             CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            0000113344555554  46788999999999888765442  12222     23466677889999999998766543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.44  E-value=4.1e-12  Score=117.82  Aligned_cols=188  Identities=20%  Similarity=0.214  Sum_probs=156.1

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      .+.++.|+.+|.+++ +.++..|+++|..+...         +++|.|+.+|.+ +++.++..|+++|+++..       
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~~---------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE---------RAVEPLIKALKD-EDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCG---------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCc---------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence            457899999998654 67778899999987641         378999999987 789999999999999863       


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  295 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  295 (530)
                          .+.++.|+.++.++++.++..++++|..+..             ...+|.|..++.++++.++..++++|..+.. 
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence                2468899999999999999999999998852             2567889999999999999999999999853 


Q ss_pred             CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647          296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  375 (530)
Q Consensus       296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~  375 (530)
                                ...++.|..+| .++++.++..|+.+|+.+..                 ..+++.|..++.++++.||..
T Consensus       142 ----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~  193 (211)
T 3ltm_A          142 ----------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG-----------------ERVRAAMEKLAETGTGFARKV  193 (211)
T ss_dssp             ----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-----------------HHHHHHHHHHHHHCCHHHHHH
T ss_pred             ----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------hhHHHHHHHHHhCCCHHHHHH
Confidence                      24678888888 57888999999999999841                 258889999999999999999


Q ss_pred             HHHHHHHHhcCC
Q 009647          376 AAWVLSNIAAGS  387 (530)
Q Consensus       376 A~~~Lsnl~~~~  387 (530)
                      |.++|.++....
T Consensus       194 A~~aL~~~~~~~  205 (211)
T 3ltm_A          194 AVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHhcCCCC
Confidence            999999997654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.42  E-value=8.2e-12  Score=114.82  Aligned_cols=185  Identities=20%  Similarity=0.221  Sum_probs=156.7

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      .+..+.++++|.+++ +.++..|+++|..+...         ++++.|+.+|.+ +++.++..|+++|+.+..       
T Consensus        13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~~---------~~~~~L~~~l~~-~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE---------RAVEPLIKALKD-EDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCCG---------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred             CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCCh---------hHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence            467889999998876 67778899999987641         368999999987 789999999999999863       


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  295 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  295 (530)
                          ..+++.|+.++.++++.++..++|+|..+..             ...++.|..++.++++.++..++++|..+.. 
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                2468899999999999999999999998852             2467888999999999999999999999863 


Q ss_pred             CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647          296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  375 (530)
Q Consensus       296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~  375 (530)
                                .+.++.|..++ .++++.++..|+.+|+.+.                 ...+++.|..++.++++.+|..
T Consensus       137 ----------~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~  188 (201)
T 3ltj_A          137 ----------ERAVEPLIKAL-KDEDGWVRQSAADALGEIG-----------------GERVRAAMEKLAETGTGFARKV  188 (201)
T ss_dssp             ----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHC-----------------SHHHHHHHHHHHHHCCHHHHHH
T ss_pred             ----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhC-----------------chhHHHHHHHHHhCCCHHHHHH
Confidence                      34678888888 5778899999999999983                 1258889999999999999999


Q ss_pred             HHHHHHHHh
Q 009647          376 AAWVLSNIA  384 (530)
Q Consensus       376 A~~~Lsnl~  384 (530)
                      |.++|.++.
T Consensus       189 A~~aL~~l~  197 (201)
T 3ltj_A          189 AVNYLETHK  197 (201)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHH
Confidence            999999874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.30  E-value=1.2e-10  Score=136.19  Aligned_cols=395  Identities=11%  Similarity=0.066  Sum_probs=254.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh------
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE------  172 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~------  172 (530)
                      +++.+.+.++..|..|+.++..+...-..   . .+ ..+++.++..|.+++ +.++..|+.+|..++..-...      
T Consensus        53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~-~~-~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~~~~  126 (1230)
T 1u6g_C           53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y-QV-ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGSAL  126 (1230)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H-HH-HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H-HH-HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcccccch
Confidence            34445688999999999999998654322   1 11 346788888887655 455556889999988433221      


Q ss_pred             HHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch-hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647          173 TKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  250 (530)
Q Consensus       173 ~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~  250 (530)
                      ..... ..+|.|+..+.+++++.+++.|+.+|+.++...+. ....  -..+++.|+..+.+++..++..++.+|..++.
T Consensus       127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~  204 (1230)
T 1u6g_C          127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVM  204 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            11122 57899999997446789999999999999843211 1111  12356778888888889999999999999996


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCC-HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhH
Q 009647          251 GPDPKPATELIKVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL  329 (530)
Q Consensus       251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al  329 (530)
                      .....    .  ...++|.++..+...+ ..++..++.++..++......... .-..+++.++..+ .+.+++++..++
T Consensus       205 ~~~~~----~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l-~d~~~~vR~~a~  276 (1230)
T 1u6g_C          205 SCGNI----V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFC-NVDDDELREYCI  276 (1230)
T ss_dssp             TC----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHH-SSCCTTTHHHHH
T ss_pred             hcCHH----H--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHh-cCCCHHHHHHHH
Confidence            53211    2  2467888888776543 467777888888888643322211 1246788888888 467888999999


Q ss_pred             HHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc-------------------------------------CcHhH
Q 009647          330 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-------------------------------------EHRVL  372 (530)
Q Consensus       330 ~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~-------------------------------------~~~~i  372 (530)
                      .+++.++..........+       ..++|.++..+..                                     ....+
T Consensus       277 ~~l~~l~~~~~~~~~~~l-------~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v  349 (1230)
T 1u6g_C          277 QAFESFVRRCPKEVYPHV-------STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV  349 (1230)
T ss_dssp             HHHHHHHHCTTCCCHHHH-------HHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred             HHHHHHHHHChHHHHHhH-------HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence            999999876443322222       2355555554431                                     11357


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC----CCCc------hhHHHH
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG----EGKP------KLIQEH  442 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~------~~~~~~  442 (530)
                      |+.|+.++..++...++....++. .++|.++..+.+.+..+|..|+.++..++......    .+.+      ++ ...
T Consensus       350 R~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~  427 (1230)
T 1u6g_C          350 RRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP-LTM  427 (1230)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH-HHH
T ss_pred             HHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch-HHH
Confidence            999999999998754443444443 47888888888888999999999888776421000    0000      00 011


Q ss_pred             HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCc--HHHHHHHHHHHHh
Q 009647          443 LVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLVDK  520 (530)
Q Consensus       443 ~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~--~~i~~~A~~il~~  520 (530)
                      +..++ ..+++.+...|.+.++.++..++.+|..++...+.. ....+  ...++.|..+..+++  .+++..+...+..
T Consensus       428 ~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~  503 (1230)
T 1u6g_C          428 LQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-LTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYV  503 (1230)
T ss_dssp             HHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT-TGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh-hHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence            11111 335667777799999999999999999988765431 11111  123444555555544  4787777776666


Q ss_pred             hc
Q 009647          521 YF  522 (530)
Q Consensus       521 ~f  522 (530)
                      ++
T Consensus       504 ~~  505 (1230)
T 1u6g_C          504 IL  505 (1230)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.27  E-value=5.3e-09  Score=112.76  Aligned_cols=331  Identities=10%  Similarity=0.076  Sum_probs=233.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .+.+|.+.+++-.+.+...+..++..+-.+...+.+-       +.+.+..+.++.+++ ...++-+..++.+++.++++
T Consensus        36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e  107 (621)
T 2vgl_A           36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSE  107 (621)
T ss_dssp             HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcH
Confidence            3456666665212347888888888887776555433       346788888888766 56666688899999987765


Q ss_pred             hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc--CCCChhHHHHHHHHHHHhh
Q 009647          172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM--LPNKGSTVRTAAWALSNLI  249 (530)
Q Consensus       172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~nL~  249 (530)
                      ...   -++..+.+-|++ +++-++-.|+.+|++|..  ++.     ....++++.+++  .+.++.+++.|+.++..++
T Consensus       108 ~~~---L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~--~e~-----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~  176 (621)
T 2vgl_A          108 LIR---LINNAIKNDLAS-RNPTFMGLALHCIANVGS--REM-----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY  176 (621)
T ss_dssp             HHH---HHHHHHHHHHHS-CCHHHHHHHHHHHHHHCC--HHH-----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHhcCC-CCHHHHHHHHHHhhccCC--HHH-----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            433   256677777877 789999999999999974  332     234678899999  8889999999999999999


Q ss_pred             cCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHH----HHhc--CC---
Q 009647          250 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE----RLAT--SN---  320 (530)
Q Consensus       250 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~----lL~~--~~---  320 (530)
                      +.. |    +.+...++++.+..+|.+.|+.++..|+.++..++..++...     ...++.+++    ++..  .+   
T Consensus       177 ~~~-p----~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~  246 (621)
T 2vgl_A          177 RTS-P----DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQD  246 (621)
T ss_dssp             HHC-G----GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCST
T ss_pred             HhC-h----hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccc
Confidence            742 3    232224889999999999999999999999999997544321     123444443    3321  11   


Q ss_pred             -------CccchhhhHHHHhhhhcCCc-cccchhcccCCCcchhhHHHHHHHh---------ccCcH--hHHHHHHHHHH
Q 009647          321 -------SLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCL---------KSEHR--VLKKEAAWVLS  381 (530)
Q Consensus       321 -------~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~~~~~~~l~~L~~lL---------~~~~~--~i~~~A~~~Ls  381 (530)
                             ++..+...++.|+.++..++ .....+.        ..++.++..+         ++.+.  .|..+|+.++.
T Consensus       247 ~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--------~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~  318 (621)
T 2vgl_A          247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--------ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII  318 (621)
T ss_dssp             TEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--------HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--------HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHH
Confidence                   46678889999999876433 2222222        2444444322         23333  89999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhc-
Q 009647          382 NIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-  460 (530)
Q Consensus       382 nl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-  460 (530)
                      .+. ..++..+.     ++..|..+|.++++.+|.-|+.+|..++...    ..+       ..+  ......++..|. 
T Consensus       319 ~l~-~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~----~~~-------~~~--~~~~~~i~~~L~~  379 (621)
T 2vgl_A          319 HHD-SEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSE----FSH-------EAV--KTHIETVINALKT  379 (621)
T ss_dssp             HHC-CCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT----TTH-------HHH--HTTHHHHHHHHTT
T ss_pred             hcC-CcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhcc----CcH-------HHH--HHHHHHHHHHhcc
Confidence            985 34443332     4667888899999999999999999998642    111       122  235677888888 


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q 009647          461 SADIEAARLGLQFMELVL  478 (530)
Q Consensus       461 ~~d~~i~~~~L~~L~~il  478 (530)
                      ++|..+...+|+.|..+.
T Consensus       380 d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          380 ERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHC
T ss_pred             CCCHhHHHHHHHHHHHHc
Confidence            899999999999988885

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.23  E-value=3.6e-11  Score=131.29  Aligned_cols=199  Identities=15%  Similarity=0.110  Sum_probs=154.0

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhH-hhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      .+.++++.|++ ++++.|..|+|+|+||+. ++..|..+...|++.+++ .+|.+++.+++..|+|+|.|||....+..+
T Consensus        35 ~i~Pll~~L~S-~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVLKDLKS-PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHHHHHSS-SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            45567788887 789999999999999997 689999999999998865 578889999999999999999976444443


Q ss_pred             hhHHHhhchHHHHHHHhccCC---------------------HHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHH
Q 009647          258 TELIKVDGLLDAILRHLKRAD---------------------EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL  316 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d---------------------~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL  316 (530)
                      . .+...+++++|..++....                     .++..+++++|.+|+.++++....+...+.++.|+..|
T Consensus       113 ~-~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          113 V-HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             H-HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             H-HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            3 3446899999998875211                     13556788999999988888888888899999999988


Q ss_pred             hcCC--CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHh
Q 009647          317 ATSN--SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA  384 (530)
Q Consensus       317 ~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~  384 (530)
                      ....  ..+++..|+.+|..++..++...+.+.+.|   ....+..+..+..+.+ ..+..+|+++.|+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~---~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ---ETHVYDVLLKLATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC---SSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc---hHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence            5322  346888999999999999888887777543   1223444554444443 45788999999984

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.04  E-value=5e-10  Score=122.28  Aligned_cols=195  Identities=17%  Similarity=0.153  Sum_probs=147.9

Q ss_pred             ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH-HHHhccCCHHHHHHHHHHHHHhhc-CCchh
Q 009647          222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI-LRHLKRADEELTTEVAWVVVYLSA-LSNVA  299 (530)
Q Consensus       222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L-~~lL~~~d~~v~~~a~~~L~~L~~-~~~~~  299 (530)
                      .|.|++..|+++++..+..|+|+|+||+.+  +. .+..+...++++.+ ..+|.+++.+|+..|+|+|.||+. +..+.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQD--AK-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HH-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            466778889999999999999999999964  32 34444456777654 567888999999999999999996 34677


Q ss_pred             HHHHHhcCchHHHHHHHhcC------CC--------------ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHH
Q 009647          300 TSLLVKSGVLQLLVERLATS------NS--------------LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIA  359 (530)
Q Consensus       300 ~~~i~~~g~l~~Lv~lL~~~------~~--------------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~  359 (530)
                      +..++..|+++.|..+|...      ..              ..+...++.+|.+++.+++.....+..      .+.++
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~------~~~l~  185 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT------KQTIL  185 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT------CHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh------cccHH
Confidence            78889999999999888521      00              112345778888888887776666664      47899


Q ss_pred             HHHHHhccC---cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcH---HHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          360 VLVKCLKSE---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL---ALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       360 ~L~~lL~~~---~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l---~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .|+.+|.+.   ...++..|+.+|.+++..+.+.++.+.+.+..   ..+..+..+. ...+..+++.|.|+.
T Consensus       186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHh
Confidence            999988543   35799999999999999999999999887643   3333333333 346788999999974

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.99  E-value=1.2e-08  Score=100.85  Aligned_cols=305  Identities=11%  Similarity=0.145  Sum_probs=182.7

Q ss_pred             CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHh
Q 009647          107 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAH  186 (530)
Q Consensus       107 d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~l  186 (530)
                      |+.....++..+-.++..+..-+-.++  ..+.+..+.++.+++ ..+++-....+.+++....+    ++=++..|.+-
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e----~iLv~Nsl~kD  112 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAED----VIIVTSSLTKD  112 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSC----GGGGHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHH----HHHHHHHHHhh
Confidence            666777788888777766654332222  245677778888766 56666677788888865322    23478888888


Q ss_pred             hcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 009647          187 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL  266 (530)
Q Consensus       187 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~  266 (530)
                      +++ +++-++-.|+.+|++|...  +.-.     .+.+++.+.|.+.++.++++|+.+...|+...     ++.+  .++
T Consensus       113 l~~-~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-----pe~v--~~~  177 (355)
T 3tjz_B          113 MTG-KEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-----FDVV--KRW  177 (355)
T ss_dssp             HHS-SCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-----HHHH--HTT
T ss_pred             cCC-CcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-----HHHH--HHH
Confidence            988 7899999999999999863  3222     34566778888999999999999999998542     3454  489


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCC--CccchhhhHHHHhhhhcCC-cccc
Q 009647          267 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN--SLQLLIPVLRSLGNLVAGD-SSTI  343 (530)
Q Consensus       267 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~-~~~~  343 (530)
                      ++.+-.++.+.++.++..|+.+|..+...+..         .+..|+..+....  ++..+...++.++.+...+ +...
T Consensus       178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~  248 (355)
T 3tjz_B          178 VNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD  248 (355)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH
Confidence            99999999999999999999999999864321         3455566564321  4555566777777777655 2222


Q ss_pred             chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647          344 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG  423 (530)
Q Consensus       344 ~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~  423 (530)
                                 ...++.+..+|+|.++.|..+|++++..+...+..    +. ..++..|..+|.++++.+|..|+..|.
T Consensus       249 -----------~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          249 -----------SPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             -----------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence                       24677888889999999999999999988542221    11 234667777888999999999999988


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHH
Q 009647          424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF  473 (530)
Q Consensus       424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~  473 (530)
                      .++..      .|+       .+  ..+-.-+.+++.++|..+...|+..
T Consensus       313 ~l~~~------~P~-------~v--~~~n~~ie~li~d~n~sI~t~Aitt  347 (355)
T 3tjz_B          313 KVAMK------HPS-------AV--TACNLDLENLVTDANRSIATLAITT  347 (355)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHH------CcH-------HH--HHHHHHHHHHccCCcHhHHHHHHHH
Confidence            88753      121       11  1233456777888887776655443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.97  E-value=2.7e-07  Score=99.35  Aligned_cols=321  Identities=11%  Similarity=0.123  Sum_probs=212.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  181 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~  181 (530)
                      .+.++|...+.-+--.+..+..  .++  +.++-  ++..+..=|.+++ +..+--|+.+|+++..  ++...   ..+|
T Consensus        82 l~~s~~~~~Krl~YL~l~~~~~--~~~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~---~l~~  149 (621)
T 2vgl_A           82 LLSSNRYTEKQIGYLFISVLVN--SNS--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE---AFAG  149 (621)
T ss_dssp             GGGCSCHHHHHHHHHHHHHSCC--CCH--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH---HHTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHcc--CCc--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH---HHHH
Confidence            3358888887777777766632  223  21211  3455555666544 5555568999999864  33222   4677


Q ss_pred             HHHHhh--cCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          182 LLIAHL--GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       182 ~L~~lL--~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      .+.++|  .+ +++-||..|+.++.++...+++..   -..+.++.+..+|.++++.++.+|+.++..++... |..   
T Consensus       150 ~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~-~~~---  221 (621)
T 2vgl_A          150 EIPKILVAGD-TMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN-PEE---  221 (621)
T ss_dssp             HHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-HHH---
T ss_pred             HHHHHHhCCC-CCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC-hHH---
Confidence            888888  66 789999999999999997555432   22488999999999999999999999999999643 221   


Q ss_pred             HHHhhchHHHHH----HHhccC-------------CHHHHHHHHHHHHHhhcCC-chhHHHHHhcCchHHHHHHHhcCC-
Q 009647          260 LIKVDGLLDAIL----RHLKRA-------------DEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATSN-  320 (530)
Q Consensus       260 ~v~~~~~l~~L~----~lL~~~-------------d~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~Lv~lL~~~~-  320 (530)
                         -...+|.++    +++...             ++..+...+..|..++..+ ++....+.+  ++..++..+...+ 
T Consensus       222 ---~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k  296 (621)
T 2vgl_A          222 ---FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK  296 (621)
T ss_dssp             ---HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence               123444444    444321             5788888888888888633 233333322  3444443332111 


Q ss_pred             -------C--ccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH
Q 009647          321 -------S--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK  391 (530)
Q Consensus       321 -------~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~  391 (530)
                             +  ..+...|.+++-.+...     ..++       ..++..|..+|.+.++.+|..|+.+|..++...+. .
T Consensus       297 s~~l~~~n~~~aVl~ea~~~i~~l~~~-----~~~~-------~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~  363 (621)
T 2vgl_A          297 SKKVQHSNAKNAVLFEAISLIIHHDSE-----PNLL-------VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H  363 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCCC-----HHHH-------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H
T ss_pred             cccccccchHHHHHHHHHHHHHhcCCc-----HHHH-------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H
Confidence                   2  25666778887777421     1122       24788899999989999999999999999876532 1


Q ss_pred             HHHHhCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHH
Q 009647          392 QLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLG  470 (530)
Q Consensus       392 ~~li~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~  470 (530)
                      ..+ . ...+.++..|. +++..++..|+.+|..++..            +.+..+     +..|...+...|.+++..+
T Consensus       364 ~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------------~Nv~~I-----v~eL~~yl~~~d~~~~~~~  424 (621)
T 2vgl_A          364 EAV-K-THIETVINALKTERDVSVRQRAVDLLYAMCDR------------SNAQQI-----VAEMLSYLETADYSIREEI  424 (621)
T ss_dssp             HHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------------HHHHHH-----HHHHHHHHHHCCHHHHHHH
T ss_pred             HHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------------hhHHHH-----HHHHHHHHHhcCHHHHHHH
Confidence            222 2 24677888888 89999999999999999752            334333     4456666777787777777


Q ss_pred             HHHHHHHHc
Q 009647          471 LQFMELVLR  479 (530)
Q Consensus       471 L~~L~~il~  479 (530)
                      +..+..+..
T Consensus       425 v~~I~~la~  433 (621)
T 2vgl_A          425 VLKVAILAE  433 (621)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666553

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.92  E-value=1.4e-07  Score=85.30  Aligned_cols=225  Identities=16%  Similarity=0.096  Sum_probs=170.8

Q ss_pred             hchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCcccc
Q 009647          264 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI  343 (530)
Q Consensus       264 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~  343 (530)
                      .+.+..|..+|+..|+.++.+++.+|..+...-+.......-..+++.+++++ .+.+..+...|++||+.+..+.+-..
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCCH
Confidence            35788899999999999999999999999975444444444456899999988 68999999999999999998877655


Q ss_pred             chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647          344 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG  423 (530)
Q Consensus       344 ~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~  423 (530)
                      ..+.        .+...|..++.+++.-++.+|+-.++-+---+.  ..     +++..+..++.+.+..++..|..++.
T Consensus       111 ~~y~--------Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~-----~V~~~l~sLl~Skd~~vK~agl~~L~  175 (265)
T 3b2a_A          111 KTFL--------KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SK-----LVRTYINELVVSPDLYTKVAGFCLFL  175 (265)
T ss_dssp             HHHH--------HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CH-----HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHH--------HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hH-----HHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            5554        478889999999999999999999998822110  11     24567788889999999999999999


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHH-hchHHHHHHH
Q 009647          424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER-EDGIDAMERF  502 (530)
Q Consensus       424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~-~ggl~~L~~L  502 (530)
                      |++..++    .|+         +-.+++.-+-.+|++.|+.++..+|.++..|+...--   ...+.+ .+.+.....|
T Consensus       176 eia~~S~----D~~---------i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~---~~~~~~~~~~~~~v~~l  239 (265)
T 3b2a_A          176 NMLNSSA----DSG---------HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL---ENVKIELLKISRIVDGL  239 (265)
T ss_dssp             HHGGGCS----SCC---------CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC---SCCHHHHHHHHHHHHHG
T ss_pred             HhhcccC----CHH---------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc---HhHHHHHHHHHHHHHHH
Confidence            9987542    221         1235677788899999999999999999999865311   112222 2333445566


Q ss_pred             h-cCCcHHHHHHHHHHHHh
Q 009647          503 Q-FHENEDLRNMANGLVDK  520 (530)
Q Consensus       503 ~-~~~~~~i~~~A~~il~~  520 (530)
                      . -.+.+.++.+|..+-+.
T Consensus       240 ~~~~~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          240 VYREGAPIIRLKAKKVSDL  258 (265)
T ss_dssp             GGCSSCHHHHHHHHHHHHH
T ss_pred             HHhcCChhHHHHHHHHHHH
Confidence            6 56789999998765554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.76  E-value=4.5e-07  Score=99.42  Aligned_cols=273  Identities=13%  Similarity=0.124  Sum_probs=189.8

Q ss_pred             HHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCC-------CHHHHHHHHHHHHhhcCC
Q 009647          139 IPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS-------SSPVAEQCAWALGNVAGE  209 (530)
Q Consensus       139 v~~Lv~lL~~--~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~-------~~~v~~~a~~~L~nla~d  209 (530)
                      +..|-.+|..  .+.+.++.-|+.+|+.+..|....      ++..|...|.+.+       ++.++..|+-.||-+...
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G  467 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG  467 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence            4555555542  233556666999999999886531      4567777776522       267888999999988653


Q ss_pred             CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHH
Q 009647          210 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWV  288 (530)
Q Consensus       210 ~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~  288 (530)
                      +.  +.     .+++.|..++.+++..+.+.++++|+-+..|...         ..++..|+..+ ...++.++..++.+
T Consensus       468 S~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---------~~ai~~LL~~~~e~~~e~vrR~aalg  531 (963)
T 4ady_A          468 SA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---------PEAIHDMFTYSQETQHGNITRGLAVG  531 (963)
T ss_dssp             CC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             CC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---------HHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            32  11     2456677777777666677999999987656421         13344445443 35577899999999


Q ss_pred             HHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh-cc
Q 009647          289 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-KS  367 (530)
Q Consensus       289 L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL-~~  367 (530)
                      |+.+.-+.++.         ++.+++.|..+.++.++..+..++|--..|...             ..+++.|+..+ .+
T Consensus       532 LGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------------~~aIq~LL~~~~~d  589 (963)
T 4ady_A          532 LALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------------NSAVKRLLHVAVSD  589 (963)
T ss_dssp             HHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------------HHHHHHHHHHHHHC
T ss_pred             HHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHhccC
Confidence            99888766544         455666676667888888888888765555432             23566555554 45


Q ss_pred             CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 009647          368 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL  446 (530)
Q Consensus       368 ~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l  446 (530)
                      .+..+|..|..+|+.|..+.++         .++.++.+| ++.++.+|..|+++|+.++.+      +|.         
T Consensus       590 ~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aG------n~~---------  645 (963)
T 4ady_A          590 SNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAG------KGL---------  645 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS------SCC---------
T ss_pred             CcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccC------CCc---------
Confidence            6778999999999999887742         466666644 678999999999999999863      221         


Q ss_pred             HhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          447 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       447 ~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                        ..++..|..++...|..+...|+.+|..|....
T Consensus       646 --~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          646 --QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred             --HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence              124466778888999999999999999987543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.65  E-value=3e-07  Score=90.92  Aligned_cols=274  Identities=12%  Similarity=0.051  Sum_probs=160.7

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ..+..++++.+ ++..++.-+.-.+.+++...++.   +   =++..|.+=++++++-++..|+.+|+++...   .   
T Consensus        69 lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~---  135 (355)
T 3tjz_B           69 AFFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---T---  135 (355)
T ss_dssp             HHHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T---
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H---
Confidence            34556678877 78999999999999888753221   1   2466677778889999999999999999743   2   


Q ss_pred             hHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          259 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                       +  ...+.+.+-+.|.+.++-|+..|+.+...|....++.+     .+.+..+-+++ .+.++.++..|+.+|..+...
T Consensus       136 -m--~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          136 -M--LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             -T--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred             -H--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence             2  24777889999999999999999999999998666543     26788888888 477888889999999998754


Q ss_pred             CccccchhcccCCCcchhhHHHHHHHhccC---cHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCChhH
Q 009647          339 DSSTISDVLVPGHGITDQVIAVLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDI  414 (530)
Q Consensus       339 ~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~---~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~~~v  414 (530)
                      +.               ..+..|+.-+...   ++..+-.-+..++.++..+ ++.     ...+++.|...|++.++.|
T Consensus       207 d~---------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aV  266 (355)
T 3tjz_B          207 DR---------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMV  266 (355)
T ss_dssp             CH---------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHH
T ss_pred             ch---------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHH
Confidence            31               1444455544432   3433333344443443333 121     2346677888889999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhc
Q 009647          415 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVERED  494 (530)
Q Consensus       415 ~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~g  494 (530)
                      ..||+.+|..+...+              ..+ -..++..|..+|.++|+.++..+|+.|..+....+     ..+..+ 
T Consensus       267 vyEa~k~I~~l~~~~--------------~~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-----~~v~~~-  325 (355)
T 3tjz_B          267 VYEAASAIVNLPGCS--------------AKE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-----SAVTAC-  325 (355)
T ss_dssp             HHHHHHHHTC--------------------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------
T ss_pred             HHHHHHHHHhccCCC--------------HHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-----HHHHHH-
Confidence            999999999985421              011 13456778888999999999999999988876433     333332 


Q ss_pred             hHHHHHHHhcCCcHHHHHHHHH
Q 009647          495 GIDAMERFQFHENEDLRNMANG  516 (530)
Q Consensus       495 gl~~L~~L~~~~~~~i~~~A~~  516 (530)
                       -..|+.+..++|..|...|.-
T Consensus       326 -n~~ie~li~d~n~sI~t~Ait  346 (355)
T 3tjz_B          326 -NLDLENLVTDANRSIATLAIT  346 (355)
T ss_dssp             ----------------------
T ss_pred             -HHHHHHHccCCcHhHHHHHHH
Confidence             235788889999999988853

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.63  E-value=1.1e-05  Score=70.06  Aligned_cols=213  Identities=14%  Similarity=0.194  Sum_probs=164.5

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      .+..++.+|.+ .-..|+.+|+..+.+++...++...-++     ..|+.+++ +....+....+.+++.+++-.     
T Consensus        33 ~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~-----  101 (253)
T 2db0_A           33 VLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-----  101 (253)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence            68889999987 6688999999999999998877655443     34555655 567788888899999998642     


Q ss_pred             hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                      ++.+  .+.+|.+..-..-.|+.++.+...+|..++..+++...     +++.-+..++ .+++..=+..|+..++.+. 
T Consensus       102 Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~sml-tskd~~Dkl~aLnFi~alG-  172 (253)
T 2db0_A          102 PELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSML-SSKNREDKLTALNFIEAMG-  172 (253)
T ss_dssp             HHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHT-SCSSHHHHHHHHHHHHTCC-
T ss_pred             HHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHh-cCCChHHHHHHHHHHHHHh-
Confidence            3454  58999999999999999999999999999986665433     4566677777 4676555566676666654 


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                        +.+...+.        -++|.|..+|.+.+.-||..|.-+|.+++.-++.....+.      .-+.-+.+.+..+++.
T Consensus       173 --en~~~yv~--------PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~  236 (253)
T 2db0_A          173 --ENSFKYVN--------PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKT  236 (253)
T ss_dssp             --TTTHHHHG--------GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHH
T ss_pred             --ccCccccC--------cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHH
Confidence              34444443        5999999999999999999999999999999887555433      3455578888889988


Q ss_pred             HHHHHHHhcC
Q 009647          418 VAYVLGNLCV  427 (530)
Q Consensus       418 A~~aL~nl~~  427 (530)
                      ...+|+.++.
T Consensus       237 V~egL~rl~l  246 (253)
T 2db0_A          237 VKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.60  E-value=1.3e-05  Score=88.01  Aligned_cols=287  Identities=14%  Similarity=0.114  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcC--CCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC
Q 009647          154 QLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE--KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML  231 (530)
Q Consensus       154 ~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~--~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~  231 (530)
                      -++-|+..|+-|-.++.+.      ++..|-.+|-.  ++++.++.-|+.+||-+......  +      ++..|...|.
T Consensus       374 ~k~sA~aSLGlIh~g~~~~------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~  439 (963)
T 4ady_A          374 AKFTATASLGVIHKGNLLE------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIV  439 (963)
T ss_dssp             HHHHHHHHHHHHTSSCTTT------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccCchHH------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHc
Confidence            3455566666665554432      45555666641  25788999999999999875421  1      4566777776


Q ss_pred             CCC--------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647          232 PNK--------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL  303 (530)
Q Consensus       232 ~~~--------~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i  303 (530)
                      +++        ..++..|+..|+...-|..         ...+++.|..++.+++..+...++.+|+-+-.|+...    
T Consensus       440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~---------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~----  506 (963)
T 4ady_A          440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSA---------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP----  506 (963)
T ss_dssp             HHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH----
T ss_pred             CccccccccccHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH----
Confidence            544        5677888889988776642         1255677888888777766778888887664332211    


Q ss_pred             HhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHH
Q 009647          304 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSN  382 (530)
Q Consensus       304 ~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsn  382 (530)
                         .++..|+..+....+..++..+.-+||.+..+..+               .++.++..|. +.++.+|..++.+++.
T Consensus       507 ---~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------------~~~~li~~L~~~~dp~vRygaa~algl  568 (963)
T 4ady_A          507 ---EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------------LADDLITKMLASDESLLRYGGAFTIAL  568 (963)
T ss_dssp             ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------------GGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------------HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence               12344555444455678888899999998877654               3444555554 5788999999999987


Q ss_pred             HhcC--CHHHHHHHHhCCcHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHh-h
Q 009647          383 IAAG--SVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID-L  458 (530)
Q Consensus       383 l~~~--~~~~~~~li~~~~l~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~-l  458 (530)
                      -.+|  +..         .+..|++.+ .+.+..+|..|+.+|+.+..+.      |             ..++.++. +
T Consensus       569 AyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~------~-------------e~v~rlv~~L  620 (963)
T 4ady_A          569 AYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD------Y-------------TTVPRIVQLL  620 (963)
T ss_dssp             HTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS------C-------------SSHHHHTTTG
T ss_pred             HhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC------H-------------HHHHHHHHHH
Confidence            6665  433         344455544 5667889999999999987642      1             12345555 4


Q ss_pred             hccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          459 VRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       459 L~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      +++.|+.++..+..+|..+.-.-+   .      ...++.|..|.++.+..|++-|..-+-...
T Consensus       621 ~~~~d~~VR~gAalALGli~aGn~---~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          621 SKSHNAHVRCGTAFALGIACAGKG---L------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTSSSC---C------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             HhcCCHHHHHHHHHHHHHhccCCC---c------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            457899999999889988753211   1      234567888888889999888765555443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.58  E-value=3.8e-07  Score=86.06  Aligned_cols=184  Identities=15%  Similarity=0.160  Sum_probs=139.5

Q ss_pred             hhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009647          225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLL  303 (530)
Q Consensus       225 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i  303 (530)
                      .+...+.+.+...++.++..|..++.+. +......  ...+++.|..++. +.+..++..++.++..|+..-...... 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-   94 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-   94 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence            4777788889999999999999998752 1111111  2367888899995 889999999999999999632222222 


Q ss_pred             HhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHH
Q 009647          304 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI  383 (530)
Q Consensus       304 ~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl  383 (530)
                      +-..+++.++..+ .+.+..++..|..+|.+++....      +       ..++|.+...+.+.++.+|..++..|+.+
T Consensus        95 ~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           95 YASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------L-------EAQQESIVESLSNKNPSVKSETALFIARA  160 (242)
T ss_dssp             HHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------H-------HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            2234788888888 46788899999999999986432      1       24889999999999999999999999996


Q ss_pred             hcC-CHHH-HHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          384 AAG-SVEH-KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       384 ~~~-~~~~-~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      ... .+.. ....+. .++|.|+.+|.+.++++|..|..+++.++.
T Consensus       161 l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          161 LTRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HTTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            543 3332 122223 489999999999999999999999999864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.55  E-value=8.7e-09  Score=87.57  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccc
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST  342 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~  342 (530)
                      ..+.++.+..+|.++++.++..++|+|..+..  .          .++.|+.+| .++++.++..|+++|+++..     
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence            35778889999999999999999999987643  1          257788888 47899999999999999752     


Q ss_pred             cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          343 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       343 ~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                                  ...++.|..+|.++++.||..|+|+|+++.  .+         ..++.|+.++.++++.++..|+++|
T Consensus        72 ------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A           72 ------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYL  128 (131)
T ss_dssp             ------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                        247889999999999999999999999984  22         2578899999999999999999998


Q ss_pred             HHh
Q 009647          423 GNL  425 (530)
Q Consensus       423 ~nl  425 (530)
                      .++
T Consensus       129 ~~i  131 (131)
T 1te4_A          129 ETH  131 (131)
T ss_dssp             GGC
T ss_pred             HhC
Confidence            754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.55  E-value=1.9e-06  Score=78.05  Aligned_cols=187  Identities=16%  Similarity=0.168  Sum_probs=142.1

Q ss_pred             CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647          307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~  386 (530)
                      +.+..|..+| +..++.++..++.+|+.+...-+.......      -..+++.++.++.+.+..+...|+.++..|..+
T Consensus        33 ~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~------~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~  105 (265)
T 3b2a_A           33 RALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMV------LERHLDVFINALSQENEKVTIKALRALGYLVKD  105 (265)
T ss_dssp             HHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHH------HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHH------HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence            4677788888 578889999999999999987544333222      136999999999999999999999999999987


Q ss_pred             CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHH
Q 009647          387 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA  466 (530)
Q Consensus       387 ~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i  466 (530)
                      -+-.-+.+..  +...|.+++.+++.-++.+|+..++-+-..      ++           ..+++..+..++.+.|+++
T Consensus       106 vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~------~~-----------~~~V~~~l~sLl~Skd~~v  166 (265)
T 3b2a_A          106 VPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL------ED-----------SKLVRTYINELVVSPDLYT  166 (265)
T ss_dssp             CCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CC-----------CHHHHHHHHHHHTCSSHHH
T ss_pred             CCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cc-----------hHHHHHHHHHHHhCCChhH
Confidence            4322222222  456788999999999999999999998221      11           1234566888899999999


Q ss_pred             HHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q 009647          467 ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       467 ~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~  524 (530)
                      +..++.++.+|.....+.....     +.++-+..+..|+|+.+.++|..+++..++.
T Consensus       167 K~agl~~L~eia~~S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          167 KVAGFCLFLNMLNSSADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHHHHHGGGCSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhcccCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999986654432222     2233466678999999999999999998775

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.51  E-value=5.1e-08  Score=82.75  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          306 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       306 ~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      ...++.++.+| .++++.++..|+++|+++..                  ..++.|+.+|.++++.+|..|+|+|+++..
T Consensus        11 ~~~~~~l~~~L-~~~~~~vR~~A~~~L~~~~~------------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~   71 (131)
T 1te4_A           11 SSGLVPRGSHM-ADENKWVRRDVSTALSRMGD------------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD   71 (131)
T ss_dssp             ----------C-CSSCCCSSSSCCSSTTSCSS------------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS
T ss_pred             cccHHHHHHHh-cCCCHHHHHHHHHHHHHhCc------------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            45677888888 57899999999999997631                  135889999999999999999999999842


Q ss_pred             CCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647          386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE  465 (530)
Q Consensus       386 ~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~  465 (530)
                        +         ..++.|+.+|.++++.||..|+|+|+++..        +             ..++.|+.+|+++|+.
T Consensus        72 --~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~-------------~a~~~L~~~l~d~~~~  119 (131)
T 1te4_A           72 --E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------E-------------RVRAAMEKLAETGTGF  119 (131)
T ss_dssp             --H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHTTSCCTH
T ss_pred             --H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------H-------------HHHHHHHHHHhCCCHH
Confidence              2         257889999999999999999999999842        1             2457889999989999


Q ss_pred             HHHHHHHHHHH
Q 009647          466 AARLGLQFMEL  476 (530)
Q Consensus       466 i~~~~L~~L~~  476 (530)
                      +...+..+|..
T Consensus       120 vr~~A~~aL~~  130 (131)
T 1te4_A          120 ARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHGGG
T ss_pred             HHHHHHHHHHh
Confidence            99888887754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.45  E-value=1.2e-06  Score=82.59  Aligned_cols=179  Identities=15%  Similarity=0.167  Sum_probs=131.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHH
Q 009647          104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL  182 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~  182 (530)
                      .+.+...+..|+..|..++..........+  ..+++.|...|..+.+..++..|+.++..++.+-.......+ ..+|.
T Consensus        25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~  102 (242)
T 2qk2_A           25 EEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPS  102 (242)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            589999999999999999875221100001  235777888885234466767799999999954222222222 58999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc-hhhHH
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP-ATELI  261 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~v  261 (530)
                      ++..+.+ ++..+++.|..+|.+++...+ .      ..+++.+...+++.++.++..++..|..+.....|.. .... 
T Consensus       103 ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~-  173 (242)
T 2qk2_A          103 LLEKFKE-KKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL-  173 (242)
T ss_dssp             HHHGGGC-CCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH-
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH-
Confidence            9999998 789999999999999987432 2      1257778888998999999999999999654432321 1122 


Q ss_pred             HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                       ...++|.|..++.+++++++..|..++..++.
T Consensus       174 -l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          174 -LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             -HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             35889999999999999999999999998885

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.3e-06  Score=82.70  Aligned_cols=209  Identities=11%  Similarity=0.057  Sum_probs=144.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHH-hhcCCchhHHHHHh-cCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc-cccc-
Q 009647          269 AILRHLKRADEELTTEVAWVVVY-LSALSNVATSLLVK-SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STIS-  344 (530)
Q Consensus       269 ~L~~lL~~~d~~v~~~a~~~L~~-L~~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~-  344 (530)
                      .+...+.+.+..-+..++..|.. ++.+.+.......+ ..++..|...+....+..++..|+.+|+.++.+-. .... 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35566788899999999999999 87543221100001 13456677777446777889999999999996543 2222 


Q ss_pred             hhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHH-HhCCcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647          345 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLG  423 (530)
Q Consensus       345 ~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~l-i~~~~l~~Li~lL~~~~~~v~~eA~~aL~  423 (530)
                      ...       ..++|.++..+.+.++.|+..+..++.+++...+.....- ++ .+++.|+..|++.++.+|.+++.+|.
T Consensus       100 ~y~-------~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~  171 (249)
T 2qk1_A          100 DYV-------SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFN  171 (249)
T ss_dssp             HHH-------HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            232       2489999999999889999999999998876431110000 00 26778889999999999999999999


Q ss_pred             HhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHH
Q 009647          424 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER  492 (530)
Q Consensus       424 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~  492 (530)
                      .++....   ..|    ++....+...+++.|..++...+++++..+.+++..+....++......+.+
T Consensus       172 ~~~~~~~---~~~----~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~  233 (249)
T 2qk1_A          172 ASMKEEK---DGY----STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH  233 (249)
T ss_dssp             HHHHHCC---SCS----HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred             HHHHHcC---Ccc----hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            9986431   111    2233333467899999999999999999999999998876554333333433

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.37  E-value=6.1e-06  Score=78.10  Aligned_cols=192  Identities=11%  Similarity=0.062  Sum_probs=138.2

Q ss_pred             hHhhcCCCChhHHHHHHHHHHH-hhcCCCCCchhhHHHhhchHHHHHHHh-ccCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009647          226 LARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSN-VATSL  302 (530)
Q Consensus       226 L~~lL~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~-~~~~~  302 (530)
                      +...+.+++..-+..++-.|.. ++.+. ++.......-..++..|.+.+ .+.+..++..++.+|+.|+.+-. ..+..
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            3455678889999999999999 88652 332100000135678888888 68888999999999999996422 22220


Q ss_pred             HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccch-hcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHH
Q 009647          303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD-VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS  381 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~-~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Ls  381 (530)
                      -+-.-+++.+++.+ .+....++..+..++-.++...+..... .+       ..+++.|...|.+.++.+|.+++.+|+
T Consensus       100 ~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-------~~ll~~l~~~l~~k~~~vk~~al~~l~  171 (249)
T 2qk1_A          100 DYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRN-------EDMLKDILEHMKHKTPQIRMECTQLFN  171 (249)
T ss_dssp             HHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-------HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcH-------HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            11123688888888 4667788888888888888654322111 02       258899999999999999999999999


Q ss_pred             HHhcCCH---HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          382 NIAAGSV---EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       382 nl~~~~~---~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .++....   ......+...++|.|..++.+.+..||..|..+++.++
T Consensus       172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9875443   44444553469999999999999999999999998875

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.35  E-value=8.7e-05  Score=75.10  Aligned_cols=320  Identities=15%  Similarity=0.118  Sum_probs=188.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCC-cHHHH-HHcCCH-HHHHHHhcCCCChHHHHH-HHHHHHHHhcCC
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP-PIETA-LKAGAI-PVLVQCLAFGSPDEQLLE-AAWCLTNIAAGK  169 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~-~~~~i-i~~g~v-~~Lv~lL~~~~~~~~~~e-A~~~L~nia~~~  169 (530)
                      .-+..++.  ...+.+.....+.-+..++...+.. ....+ .+..-. ..+.......+ +..... |..+++.++...
T Consensus        80 ~~~l~lL~--~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~d-d~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           80 IPLIHLLS--TSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD-FQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             HHHHHHHH--SCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSS-HHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHh--hcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhccc-chHHHHHHHHHHHHHhccC
Confidence            34555555  3456666666777777777653210 22222 332222 22333222223 333334 555555555333


Q ss_pred             hhhHHhhcCCcH--HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC--ChhhhHhhcCC-------------
Q 009647          170 QEETKALLPALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLP-------------  232 (530)
Q Consensus       170 ~~~~~~i~~~v~--~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~lL~~-------------  232 (530)
                      ....+.+-..+.  .++..|...++.+.+..++.+|..+.. .+++|..+.+.+  .+|+++.++..             
T Consensus       157 ~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~  235 (480)
T 1ho8_A          157 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  235 (480)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             CccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence            322222112222  455666653345667789999999988 689999887654  36776554331             


Q ss_pred             --C--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH--HHHHHHhcc-CCHHHHHHHHHHHHHhhcCCc----hhHH
Q 009647          233 --N--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL--DAILRHLKR-ADEELTTEVAWVVVYLSALSN----VATS  301 (530)
Q Consensus       233 --~--~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l--~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~----~~~~  301 (530)
                        .  ...++..++.|++-|+...  ....++ ...++.  +.|+.+++. ..+.+..-++.+|.|+.....    ....
T Consensus       236 ~~~~~~~Ql~Y~~ll~iWlLSF~~--~~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          236 NSNHLGIQLQYHSLLLIWLLTFNP--VFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSH--HHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCH--HHHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence              1  2456788888998888652  233333 233332  566666664 457899999999999997542    1222


Q ss_pred             -HHHhcCchHHHHHHHhcC--CCccchhhhHHHHhhhhcC--------C--------------cccc---------chhc
Q 009647          302 -LLVKSGVLQLLVERLATS--NSLQLLIPVLRSLGNLVAG--------D--------------SSTI---------SDVL  347 (530)
Q Consensus       302 -~i~~~g~l~~Lv~lL~~~--~~~~v~~~al~~L~nl~~~--------~--------------~~~~---------~~~i  347 (530)
                       .++..++ .+++..|...  .|+++. ..+..|......        +              +..+         ..+.
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence             2333344 4455556422  344432 222332222211        0              1110         1111


Q ss_pred             ccCCCcchhhHHHHHHHhcc----------CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          348 VPGHGITDQVIAVLVKCLKS----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       348 ~~g~~~~~~~l~~L~~lL~~----------~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                      +    -+..++..|+.+|.+          .++.+..-||.=|+.++...|.....+-+.|+=..+++++.+++++|+.+
T Consensus       391 e----~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~  466 (480)
T 1ho8_A          391 K----DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYE  466 (480)
T ss_dssp             S----GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred             h----cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence            1    134688999999973          46889999999999999998888887778898888999999999999999


Q ss_pred             HHHHHHHhc
Q 009647          418 VAYVLGNLC  426 (530)
Q Consensus       418 A~~aL~nl~  426 (530)
                      |+.|+.-+.
T Consensus       467 AL~avQklm  475 (480)
T 1ho8_A          467 ALKATQAII  475 (480)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987664

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.17  E-value=0.00053  Score=77.72  Aligned_cols=340  Identities=13%  Similarity=0.136  Sum_probs=180.9

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC---h--hhHHhhcC
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK---Q--EETKALLP  178 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~eA~~~L~nia~~~---~--~~~~~i~~  178 (530)
                      +++++....++.++..+++   -.++..+++.++++.++ .+|..   +..+..|+.||+.+.+..   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            4556667778888888865   24567788999999999 99863   556566999999998732   1  11112111


Q ss_pred             CcHHHHHh---------------h--cCCCCHHHHHHHHHHHHhhcC-------CCchhHHHHHhcCChhhhHhhcCCCC
Q 009647          179 ALPLLIAH---------------L--GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNK  234 (530)
Q Consensus       179 ~v~~L~~l---------------L--~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~lL~~~~  234 (530)
                      .++.++..               +  .+..+.+.....+..+..+..       ..+..+..+.  .++..|+.+-..++
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~d  357 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIEE  357 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCCc
Confidence            11111111               1  111345555555655544432       1122222211  12334444444567


Q ss_pred             hhHHHHHHHHHHHhhcC--CCCCchhhHHH--hhchHHHHHHHhccCC-------------------HH---HHHHHHHH
Q 009647          235 GSTVRTAAWALSNLIKG--PDPKPATELIK--VDGLLDAILRHLKRAD-------------------EE---LTTEVAWV  288 (530)
Q Consensus       235 ~~~~~~a~~~L~nL~~~--~~~~~~~~~v~--~~~~l~~L~~lL~~~d-------------------~~---v~~~a~~~  288 (530)
                      .++...+.-.-..|+..  ..+. .+....  -...++.+++-+..++                   .+   .....--+
T Consensus       358 ~ei~~~tl~FW~~L~~~l~~e~~-~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          358 RELFKTTLDYWHNLVADLFYEPL-KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTT-TGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            77766665443444321  1111 111110  1234444444443322                   01   11111133


Q ss_pred             HHHhhcC-CchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccc-cchhcccCCCcchhhHHHHHHHh
Q 009647          289 VVYLSAL-SNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCL  365 (530)
Q Consensus       289 L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~~~~~~~l~~L~~lL  365 (530)
                      |.+++.- .++..+.     .++.+.+.+.. ..+...+..+++++|.|+.+-+.. ...++       ..+++.|+.++
T Consensus       437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-------~~vi~~Ll~l~  504 (1023)
T 4hat_C          437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLC  504 (1023)
T ss_dssp             HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHHHHHHhh
Confidence            4444321 1122111     23334444422 245677889999999999776543 22333       35888888888


Q ss_pred             cc-----CcHhHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 009647          366 KS-----EHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK  437 (530)
Q Consensus       366 ~~-----~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~  437 (530)
                      .+     .+..++..+||+++..+.-   .++....     ++..|+..+..+++.++..|||++.++|..+.       
T Consensus       505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~-------  572 (1023)
T 4hat_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCK-------  572 (1023)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT-------
T ss_pred             hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-------
Confidence            64     3345677889999977542   2232222     34456666666778999999999999986421       


Q ss_pred             hHHHHHHHHHh------c----CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCC
Q 009647          438 LIQEHLVSLVG------R----GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       438 ~~~~~~~~l~~------~----g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~  483 (530)
                            ..+..      .    .++..+...+..-+++-...+.+++..++...++
T Consensus       573 ------~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          573 ------YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             ------HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             ------HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence                  22221      1    1222333333345666667788888888876653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.17  E-value=0.00029  Score=79.99  Aligned_cols=340  Identities=13%  Similarity=0.075  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc---------------CCCChHHHHHHHHHHHHHhcCChh--
Q 009647          109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA---------------FGSPDEQLLEAAWCLTNIAAGKQE--  171 (530)
Q Consensus       109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~---------------~~~~~~~~~eA~~~L~nia~~~~~--  171 (530)
                      ..+..+++++..++.... .|..  +...+++.++. |.               ..+.++....|+.+|..+......  
T Consensus       204 ~~~~~al~~l~~~~~~~~-ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIG-YTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhCC-cCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            567788888887765311 1222  34556777776 41               112345545589999999975331  


Q ss_pred             hHHhhcCCcHHHHHhh-------cCCCC---HHHHHHHHHHHHhhcCCCch-hHHHH---------HhcCChhhhHhhcC
Q 009647          172 ETKALLPALPLLIAHL-------GEKSS---SPVAEQCAWALGNVAGEGEE-FRNVL---------LSQGALPPLARMML  231 (530)
Q Consensus       172 ~~~~i~~~v~~L~~lL-------~~~~~---~~v~~~a~~~L~nla~d~~~-~r~~~---------~~~g~i~~L~~lL~  231 (530)
                      ....+...+|.++.+.       .. .+   .+.....+..+..++..... +.+.+         .-...++.|+.+..
T Consensus       280 ~~~~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~  358 (971)
T 2x1g_F          280 YPKTAFVLIKMFLDSLSEITKTEWK-RENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTD  358 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSS-SSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHc
Confidence            1122223444444422       22 33   25666666666655532211 11000         00134555555443


Q ss_pred             C-----CChhHHHHHHHHHHHhhcCC-------CCCchhhHHH--hhchHHHHHHHhccCCH---------------HHH
Q 009647          232 P-----NKGSTVRTAAWALSNLIKGP-------DPKPATELIK--VDGLLDAILRHLKRADE---------------ELT  282 (530)
Q Consensus       232 ~-----~~~~~~~~a~~~L~nL~~~~-------~~~~~~~~v~--~~~~l~~L~~lL~~~d~---------------~v~  282 (530)
                      .     .+..+...+++.+..+++..       ..........  ...+++.++..+..++.               +.+
T Consensus       359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R  438 (971)
T 2x1g_F          359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR  438 (971)
T ss_dssp             CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence            3     36788899999988887510       1111111110  12444555544432211               244


Q ss_pred             HHHHHHHHHhhcCCc-hhHHHHHhcCchHHHHHHHhc----CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhh
Q 009647          283 TEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLAT----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV  357 (530)
Q Consensus       283 ~~a~~~L~~L~~~~~-~~~~~i~~~g~l~~Lv~lL~~----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~  357 (530)
                      ..+.-+|..++.... .....     +++.+-..+..    ..+...+..++.+++.++.+........+       ..+
T Consensus       439 ~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l-------~~l  506 (971)
T 2x1g_F          439 QDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI-------PRL  506 (971)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH-------HHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH-------HHH
Confidence            556666666664322 11121     12233333321    14566788999999999877544322222       134


Q ss_pred             HHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCc
Q 009647          358 IAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP  436 (530)
Q Consensus       358 l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~  436 (530)
                      ++.+..+.. +.++.||..+||+++.++..-..+.+.+-  .+++.|+..|.   +.++..|++++.+++..+.      
T Consensus       507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~------  575 (971)
T 2x1g_F          507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SSMSAQATLGLKELCRDCQ------  575 (971)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCH------
T ss_pred             HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH------
Confidence            553333332 24789999999999988742111111111  25666776672   7899999999999996421      


Q ss_pred             hhHHHHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccC
Q 009647          437 KLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       437 ~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~  481 (530)
                          ..+... -..++..|..++..  -+.+....+++++..++...
T Consensus       576 ----~~l~p~-~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          576 ----LQLKPY-ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             ----HHHHHH-HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             ----Hhcccc-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence                111111 12456667777776  35777888888888887654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.16  E-value=0.0015  Score=66.04  Aligned_cols=324  Identities=13%  Similarity=0.112  Sum_probs=191.5

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc---hhHHHHHhcCCh-hhhH-hhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE---EFRNVLLSQGAL-PPLA-RMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~---~~r~~~~~~g~i-~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      ++..++.+|+...+.++....+-.+.-+..+++   .....+.+..-. ..+. .++..++.-....++.+++.++... 
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~-  156 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG-  156 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT-
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC-
Confidence            678899999887889999999999998888765   332333333222 1122 2333344455566666666665332 


Q ss_pred             CCchhhHHHhhchHH--HHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcC--chHHHHHHHh---cCC-----
Q 009647          254 PKPATELIKVDGLLD--AILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSG--VLQLLVERLA---TSN-----  320 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~--~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g--~l~~Lv~lL~---~~~-----  320 (530)
                      +. ..+.  ....+.  .++..|... +.+...-++.+|..|.. .+++...+.+.+  .++.++..+.   ++.     
T Consensus       157 ~~-~~~~--l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          157 LH-NVKL--VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TC-CHHH--HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             Cc-cHhH--HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            22 1222  123333  455555542 34455567888888887 556666665543  3555554332   111     


Q ss_pred             --------CccchhhhHHHHhhhhcCCccccchhcccCCCcchh--hHHHHHHHhcc-CcHhHHHHHHHHHHHHhcCCH-
Q 009647          321 --------SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ--VIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSV-  388 (530)
Q Consensus       321 --------~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~--~l~~L~~lL~~-~~~~i~~~A~~~Lsnl~~~~~-  388 (530)
                              +.+++-.++-|+--++...+ ....+..      .+  .++.|+.+++. .+..|.+-++.++.|+....+ 
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~------~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQ------KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHT------TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHh------cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence                    12335566777766664443 3333322      12  23566676754 467899999999999987652 


Q ss_pred             ---HHHH-HHHhCCcHHHHHHHhc---CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH---------------
Q 009647          389 ---EHKQ-LIHSSEALALLLHLLS---TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL---------------  446 (530)
Q Consensus       389 ---~~~~-~li~~~~l~~Li~lL~---~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l---------------  446 (530)
                         ..+. .++..++ +++++.|.   .+|+++...--+....+-..-..- .+   ..++...+               
T Consensus       306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~l-ts---fDeY~~El~sG~L~WSP~H~se~  380 (480)
T 1ho8_A          306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQEL-TS---FDEYVAELDSKLLCWSPPHVDNG  380 (480)
T ss_dssp             THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTC-CH---HHHHHHHHHHTCCCCCGGGGCHH
T ss_pred             hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhc-cc---HHHHHHHHhcCCcccCCCccchh
Confidence               2233 2333445 45666663   356666544333222221100000 00   01122221               


Q ss_pred             ---------Hh--cCChHHHHhhhcc----------CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcC
Q 009647          447 ---------VG--RGCLSGFIDLVRS----------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH  505 (530)
Q Consensus       447 ---------~~--~g~i~~L~~lL~~----------~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~  505 (530)
                               -+  ..++..|+++|.+          .|+.+..+|+.=|....+..|.  ++..+++.||=+.+-+|..|
T Consensus       381 FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          381 FWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             HHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcC
Confidence                     11  1458899999983          4677888888888888888765  67889999999999999999


Q ss_pred             CcHHHHHHHHHHHHhh
Q 009647          506 ENEDLRNMANGLVDKY  521 (530)
Q Consensus       506 ~~~~i~~~A~~il~~~  521 (530)
                      +|++|+..|..-++++
T Consensus       459 ~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          459 SDSRVKYEALKATQAI  474 (480)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999998777765

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.08  E-value=0.0022  Score=72.65  Aligned_cols=310  Identities=12%  Similarity=0.088  Sum_probs=161.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCC--------CcHHHHHHcCCHHHHHHH-------hcCCCCh--------HHH
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEF--------PPIETALKAGAIPVLVQC-------LAFGSPD--------EQL  155 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~--------~~~~~ii~~g~v~~Lv~l-------L~~~~~~--------~~~  155 (530)
                      +++.++++++..+..++..+..++...+.        +.+..+++ ...|.++++       +.....+        ...
T Consensus       128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~  206 (960)
T 1wa5_C          128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVL  206 (960)
T ss_dssp             HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            44455677888888899988888654321        01111222 235544443       4432211        111


Q ss_pred             HHHHHHHHHHhc-CChhhHHhhc-CCcHHHHHhhcCC-----CC---------HHHHHHHHHHHHhhcCCCch-hHHHHH
Q 009647          156 LEAAWCLTNIAA-GKQEETKALL-PALPLLIAHLGEK-----SS---------SPVAEQCAWALGNVAGEGEE-FRNVLL  218 (530)
Q Consensus       156 ~eA~~~L~nia~-~~~~~~~~i~-~~v~~L~~lL~~~-----~~---------~~v~~~a~~~L~nla~d~~~-~r~~~~  218 (530)
                      ..++.++.++.. +.++.....+ ..++.+.++|...     .+         ..++..++.+|..++...+. ++..+ 
T Consensus       207 ~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-  285 (960)
T 1wa5_C          207 LVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-  285 (960)
T ss_dssp             HHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            224555555542 2222222222 3456667766431     01         24667777777777643221 21111 


Q ss_pred             hcCChhhhHhhcC-----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH-----HHHHhcc---------CCH
Q 009647          219 SQGALPPLARMML-----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA-----ILRHLKR---------ADE  279 (530)
Q Consensus       219 ~~g~i~~L~~lL~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~-----L~~lL~~---------~d~  279 (530)
                       ..+++....++.     ..+..++..++-.+..+++..   .....+...+.++.     ++..+.-         +|+
T Consensus       286 -~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~---~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp  361 (960)
T 1wa5_C          286 -NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP---KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP  361 (960)
T ss_dssp             -HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH---HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred             -HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH---hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence             123444455443     235677888888888887532   11211111123333     3333320         111


Q ss_pred             --------------HHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-----CCCccchhhhHHHHhhhhcCCc
Q 009647          280 --------------ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       280 --------------~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~~~  340 (530)
                                    ..+..+..+|..|+....+   .++ ..+++.+...+..     +.+...+..|+.++|.++.+..
T Consensus       362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~  437 (960)
T 1wa5_C          362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN  437 (960)
T ss_dssp             HHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred             HHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence                          2455566666666653221   111 1123333333421     3455677899999999986421


Q ss_pred             c---c-c--chhcccCCCcchhh-HHHHHHHhccC---cHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcC
Q 009647          341 S---T-I--SDVLVPGHGITDQV-IAVLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       341 ~---~-~--~~~i~~g~~~~~~~-l~~L~~lL~~~---~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~  409 (530)
                      .   . .  ...++.     ..+ ...+...|.++   ++.+|..|||+++.++..- ++...     .+++.+++.|.+
T Consensus       438 ~~~~~~~~~~~~~~l-----~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d  507 (960)
T 1wa5_C          438 ITNAGVSSTNNLLNV-----VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQT  507 (960)
T ss_dssp             CBTTBCCCBCTTCCH-----HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTC
T ss_pred             cccCCcccccccccH-----HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCC
Confidence            1   0 0  011110     011 22344455666   8899999999999997642 22211     367888888888


Q ss_pred             CChhHHHHHHHHHHHhcCC
Q 009647          410 SPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       410 ~~~~v~~eA~~aL~nl~~~  428 (530)
                      ++..|+..|++||.+++..
T Consensus       508 ~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          508 DEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTC
T ss_pred             CChhHHHHHHHHHHHHHhc
Confidence            8899999999999999863

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.07  E-value=0.00031  Score=61.03  Aligned_cols=216  Identities=16%  Similarity=0.178  Sum_probs=153.1

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      ..++..++.+|..+- =.+|..|...+.+++...++...   +.+..|+-+++.+....+....+.++|-++...|+.-+
T Consensus        31 ~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK  106 (253)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence            446777888887432 24667799999999977665433   35667777776667778878888999999987766443


Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL  295 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  295 (530)
                           +.+|.+..-..-.++.++-+..++|..+++.. |    +.  ..++..-+..++.++|..=+..++..++-+..+
T Consensus       107 -----~vVp~lfanyrigd~kikIn~~yaLeeIaran-P----~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          107 -----SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-P----ML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             -----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-H----HH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             -----hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-h----HH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence                 34566776667779999999999999999763 2    23  347778888999988855555555555555443


Q ss_pred             CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHH
Q 009647          296 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE  375 (530)
Q Consensus       296 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~  375 (530)
                      .   ...+  ...+|+|..+| ...+.-++..|..+|++++.-++...            .++..-+.=+.+.+.-+++.
T Consensus       175 ~---~~yv--~PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklR------------kii~~kl~e~~D~S~lv~~~  236 (253)
T 2db0_A          175 S---FKYV--NPFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLR------------KVVIKRLEELNDTSSLVNKT  236 (253)
T ss_dssp             T---HHHH--GGGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHH------------HHHHHHHHHCCCSCHHHHHH
T ss_pred             C---cccc--CcchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHH------------HHHHHHHHHhcCcHHHHHHH
Confidence            3   3333  46789999988 57788888999999999998876522            23334445566666777777


Q ss_pred             HHHHHHHHhc
Q 009647          376 AAWVLSNIAA  385 (530)
Q Consensus       376 A~~~Lsnl~~  385 (530)
                      .-..|+.|+.
T Consensus       237 V~egL~rl~l  246 (253)
T 2db0_A          237 VKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.00  E-value=0.0019  Score=73.95  Aligned_cols=342  Identities=14%  Similarity=0.149  Sum_probs=179.1

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC--hh---hHHhhcC
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK--QE---ETKALLP  178 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~eA~~~L~nia~~~--~~---~~~~i~~  178 (530)
                      .++...+..++.++..+++-   .+...+++..+++.++ .++.   .+.++..|+.||..+.+..  +.   ....+..
T Consensus       206 ~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~  279 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Confidence            34577888899999888653   2234567778888888 4443   3566667999999998652  11   0111111


Q ss_pred             CcHHHHHhh-----------------cCCCCHHHHHHHHHHHHhhcC-------CCchhHHHHHhcCChhhhHhhcCCCC
Q 009647          179 ALPLLIAHL-----------------GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNK  234 (530)
Q Consensus       179 ~v~~L~~lL-----------------~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~lL~~~~  234 (530)
                      ..+.++..+                 ....+.+.....+..+..+..       ..+..+..+  ..+++.++.+...++
T Consensus       280 l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d  357 (1049)
T 3m1i_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCc
Confidence            112222211                 111234444444444433321       111122222  234666666666777


Q ss_pred             hhHHHHHHHHHHHhhc----CCCCCc-hhhHHHhhchHHHHHHHhccCC-------------------H---HHHHHHHH
Q 009647          235 GSTVRTAAWALSNLIK----GPDPKP-ATELIKVDGLLDAILRHLKRAD-------------------E---ELTTEVAW  287 (530)
Q Consensus       235 ~~~~~~a~~~L~nL~~----~~~~~~-~~~~v~~~~~l~~L~~lL~~~d-------------------~---~v~~~a~~  287 (530)
                      .++...+.-.+..+++    ...... ....  ...+++.++..+..++                   .   .....+.-
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~  435 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE  435 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence            7888888766666665    211111 1111  2344555555443211                   0   11233455


Q ss_pred             HHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccc-cchhcccCCCcchhhHHHHHHHh
Q 009647          288 VVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCL  365 (530)
Q Consensus       288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~~~~~~~l~~L~~lL  365 (530)
                      +|.+++.......   + .-+.+.+-..+.. +.+...+..+++++|.++.+-... ...++       ..+++.|..+.
T Consensus       436 ~L~~l~~~~~~~~---l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-------~~v~~~l~~l~  504 (1049)
T 3m1i_C          436 VLVYLTHLNVIDT---E-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLT  504 (1049)
T ss_dssp             HHHHHHHHCHHHH---H-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHT
T ss_pred             HHHHHHccCHHHH---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-------HHHHHHHHHHH
Confidence            5666653222111   0 1122334444421 235566789999999998543322 11112       13555555544


Q ss_pred             cc-----CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647          366 KS-----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  440 (530)
Q Consensus       366 ~~-----~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  440 (530)
                      ..     +++.++..+||+++..+.--..+-+.+-  .+++.++..+.++++.|+..|++++.++|..+.          
T Consensus       505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~----------  572 (1049)
T 3m1i_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----------  572 (1049)
T ss_dssp             TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT----------
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------
Confidence            32     3445666799999977542111111121  256677888888889999999999999986321          


Q ss_pred             HHHHHHH--h--------cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          441 EHLVSLV--G--------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       441 ~~~~~l~--~--------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                         ..+.  .        ..++..+..++..-+.+-.....+++..++...+
T Consensus       573 ---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          573 ---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             ---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             ---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence               1221  0        1233334444554455555666777777776554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.96  E-value=0.0011  Score=73.86  Aligned_cols=297  Identities=11%  Similarity=0.117  Sum_probs=195.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---hhhHHh
Q 009647           99 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---QEETKA  175 (530)
Q Consensus        99 ~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~---~~~~~~  175 (530)
                      +++.+...+...+..|+..+..++.......   .+..+++..|...+....+.   -.|+.++..++...   +..--.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~   92 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPY   92 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccc
Confidence            3333445445666788888888765432111   12236777778877643222   33788888888432   222233


Q ss_pred             hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC-ChhHHHHHHHHHHHhhcCCCC
Q 009647          176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDP  254 (530)
Q Consensus       176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~  254 (530)
                      +++.+|.++..+.+ ....|+..|..++..|+.--+...-    ..++|.|+..|.+. .......|+.++..|+... |
T Consensus        93 ~~~~~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~  166 (986)
T 2iw3_A           93 IVQLVPAICTNAGN-KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K  166 (986)
T ss_dssp             HHTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H
T ss_pred             hHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H
Confidence            34889999999987 6788999988888777753333221    34588898888754 6889999999999999642 2


Q ss_pred             CchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       255 ~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                      ...  ......++|.+...+.+..+++...+..++..+|.- ++..+     ...+|.|+..+. +++  -...++..|+
T Consensus       167 ~~~--~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~-~p~--~~~~~~~~l~  236 (986)
T 2iw3_A          167 DQV--ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIA-DPT--EVPETVHLLG  236 (986)
T ss_dssp             HHH--HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHH-CTT--HHHHHHHHHT
T ss_pred             HHH--HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhc-Chh--hhHHHHHHhh
Confidence            211  112457888888888899999999999998888852 22222     256788998885 443  2455666666


Q ss_pred             hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc--CCHHHHHHHHhCCcHHHHHHHhc-CC
Q 009647          334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLS-TS  410 (530)
Q Consensus       334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~--~~~~~~~~li~~~~l~~Li~lL~-~~  410 (530)
                      .-+.-.+. +...+.       =.+|.|.+-|......+++.++-++.|+|.  .++..+..++. .++|.|-.... ..
T Consensus       237 ~~tfv~~v-~~~~l~-------~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~  307 (986)
T 2iw3_A          237 ATTFVAEV-TPATLS-------IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIA  307 (986)
T ss_dssp             TCCCCSCC-CHHHHH-------HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCC
T ss_pred             cCeeEeee-cchhHH-------HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccC
Confidence            54432221 111111       145666666666778899999999999997  46665655554 48888888774 57


Q ss_pred             ChhHHHHHHHHHHHhc
Q 009647          411 PFDIKKEVAYVLGNLC  426 (530)
Q Consensus       411 ~~~v~~eA~~aL~nl~  426 (530)
                      +|++|.-|..|+..+.
T Consensus       308 ~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          308 DPEAREVTLRALKTLR  323 (986)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            8999988888877773

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.93  E-value=0.0015  Score=74.06  Aligned_cols=298  Identities=8%  Similarity=0.018  Sum_probs=167.0

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHh-------cCCCC--hHHHHHHHHHHHHHhcCChhh----
Q 009647          106 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-------AFGSP--DEQLLEAAWCLTNIAAGKQEE----  172 (530)
Q Consensus       106 ~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL-------~~~~~--~~~~~eA~~~L~nia~~~~~~----  172 (530)
                      ++++.+..|+.++..+++..........+ ..++|.++.+.       ..++.  ++.....+..+..++......    
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667888999999998753311111122 12344444422       22232  244445566666665322211    


Q ss_pred             --------HHhhcCCcHHHHHhhcC----CCCHHHHHHHHHHHHhhcCC---------CchhHHHHHh--cCChhhhHhh
Q 009647          173 --------TKALLPALPLLIAHLGE----KSSSPVAEQCAWALGNVAGE---------GEEFRNVLLS--QGALPPLARM  229 (530)
Q Consensus       173 --------~~~i~~~v~~L~~lL~~----~~~~~v~~~a~~~L~nla~d---------~~~~r~~~~~--~g~i~~L~~l  229 (530)
                              ...+...++.++.+...    ..++++...+++.+..++.+         .+..+..+..  ...++.++..
T Consensus       335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~  414 (971)
T 2x1g_F          335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK  414 (971)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence                    12222466677766533    24678999999988887641         1111111111  1344444544


Q ss_pred             cCCC-C--------------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CCHHHHHHHHHHH
Q 009647          230 MLPN-K--------------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADEELTTEVAWVV  289 (530)
Q Consensus       230 L~~~-~--------------~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L  289 (530)
                      +.-+ +              ...++.+.-+|..++... +..   .  ...+++.+...+..     .+...++.+++++
T Consensus       415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~-~~~---~--l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l  488 (971)
T 2x1g_F          415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL-NDY---I--LEILAAMLDEAIADLQRHPTHWTKLEACIYSF  488 (971)
T ss_dssp             TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC-TTH---H--HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH-hHH---H--HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            4321 1              134566666777777432 221   1  12344444444443     4567889999999


Q ss_pred             HHhhcCCchhHHHHHhcCchHHHHHHHh--c--CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh
Q 009647          290 VYLSALSNVATSLLVKSGVLQLLVERLA--T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL  365 (530)
Q Consensus       290 ~~L~~~~~~~~~~i~~~g~l~~Lv~lL~--~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL  365 (530)
                      +.++++.....     ...++.++.++.  .  ..++.++..+++++|.++..-....+ .+       ..+++.|+..|
T Consensus       489 ~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-------~~vl~~l~~~l  555 (971)
T 2x1g_F          489 QSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-------PPAINLLVRGL  555 (971)
T ss_dssp             HHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-------HHHHHHHHHHH
T ss_pred             HHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-------HHHHHHHHHHh
Confidence            99998644322     133444444332  1  23677888999999998854222222 22       25788888888


Q ss_pred             ccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC--ChhHHHHHHHHHHHhcC
Q 009647          366 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       366 ~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~--~~~v~~eA~~aL~nl~~  427 (530)
                       +  +.++..||+++.+++..........++ .++..|..++..+  +.+.+..+..+++.++.
T Consensus       556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          556 -N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             -H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             -C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence             3  789999999999999755544443333 3667777778763  56788888889888875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.87  E-value=0.00091  Score=74.37  Aligned_cols=288  Identities=13%  Similarity=0.144  Sum_probs=188.0

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc
Q 009647          196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK  275 (530)
Q Consensus       196 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~  275 (530)
                      +..++..+.++.......+  .+..+++..|.+.+.+....  +.|+-++..||+.....+..+.. .-+.+|.++....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~  105 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAG  105 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhc
Confidence            3455555655543221111  11225667777777765444  99999999999654333333322 2378899999888


Q ss_pred             cCCHHHHHHHHHHHHHhhcC-CchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc
Q 009647          276 RADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT  354 (530)
Q Consensus       276 ~~d~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~  354 (530)
                      +.+..|+..|-.++..+... +++..     ..++|.|+..|........+..|+.+++.++...+.+....+       
T Consensus       106 dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-------  173 (986)
T 2iw3_A          106 NKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-------  173 (986)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-------
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-------
Confidence            88888988888777777653 33222     356899999996555678889999999999976655544333       


Q ss_pred             hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC--CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 009647          355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG--SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG  432 (530)
Q Consensus       355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~--~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~  432 (530)
                      ..++|.+...+.+.++.|++.|..++..+|..  +.+ +     ...+|.|+..+.+++.  .-+++..|+.-+...+- 
T Consensus       174 ~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v-  244 (986)
T 2iw3_A          174 PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV-  244 (986)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC-
T ss_pred             cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee-
Confidence            36899999999999999999999999988763  221 1     1468999999988853  34455555554433210 


Q ss_pred             CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHH-HhcCCcHHHH
Q 009647          433 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMER-FQFHENEDLR  511 (530)
Q Consensus       433 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~-L~~~~~~~i~  511 (530)
                       ..|     .+ .+    .+|.|..-|......+.+++.-.+.|+++...+.....-| --.-++.+++ .....+||++
T Consensus       245 -~~~-----~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r  312 (986)
T 2iw3_A          245 -TPA-----TL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAR  312 (986)
T ss_dssp             -CHH-----HH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHH
T ss_pred             -cch-----hH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHH
Confidence             011     11 12    2466777788888999999999999999876552111111 1122333443 3456789988


Q ss_pred             HHHHHHHHhh
Q 009647          512 NMANGLVDKY  521 (530)
Q Consensus       512 ~~A~~il~~~  521 (530)
                      +.|.+.++..
T Consensus       313 ~~~~~a~~~l  322 (986)
T 2iw3_A          313 EVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877666655

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.87  E-value=0.0006  Score=77.27  Aligned_cols=144  Identities=10%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             hcCCCChHHHHH-HHHHHHHHhcCChhh-HHhhc-CCcHHHHHhhcCC----CCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647          146 LAFGSPDEQLLE-AAWCLTNIAAGKQEE-TKALL-PALPLLIAHLGEK----SSSPVAEQCAWALGNVAGEGEEFRNVLL  218 (530)
Q Consensus       146 L~~~~~~~~~~e-A~~~L~nia~~~~~~-~~~i~-~~v~~L~~lL~~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~  218 (530)
                      +...+.+...+| ++|+++.|+.+-.+. -...+ .++|.|+.++...    +...++..++|++|.++.--....+ . 
T Consensus       460 l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-  537 (1023)
T 4hat_C          460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-  537 (1023)
T ss_dssp             HSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-
Confidence            343334677788 799999999775433 33334 6889999988531    2345677888999998752111111 1 


Q ss_pred             hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH---------HhhchHHHHHHHhccCCHHHHHHHHHHH
Q 009647          219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI---------KVDGLLDAILRHLKRADEELTTEVAWVV  289 (530)
Q Consensus       219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v---------~~~~~l~~L~~lL~~~d~~v~~~a~~~L  289 (530)
                      =..+++.|+..+..+++.+..+|+|+|.+||....    ...+         ....++..+...+..-+++-...+..++
T Consensus       538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~----~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai  613 (1023)
T 4hat_C          538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC  613 (1023)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            11234445555666778999999999999997421    1111         0123333344444445667777888888


Q ss_pred             HHhhcC
Q 009647          290 VYLSAL  295 (530)
Q Consensus       290 ~~L~~~  295 (530)
                      +.+...
T Consensus       614 ~~vi~~  619 (1023)
T 4hat_C          614 GIIISE  619 (1023)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            888874

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.83  E-value=4.5e-05  Score=86.62  Aligned_cols=253  Identities=10%  Similarity=0.061  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcC-----CCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-----CChh
Q 009647          156 LEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-----KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALP  224 (530)
Q Consensus       156 ~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~-----~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~  224 (530)
                      ..|..+|..++....   +.++ ..++.+...++.     +++...++.|+.++|.++........ -...     ...+
T Consensus       379 ~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~  454 (960)
T 1wa5_C          379 RACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVD  454 (960)
T ss_dssp             HHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHH
T ss_pred             HHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHH
Confidence            446667777775433   2222 233444444441     25678999999999999853211100 0000     1111


Q ss_pred             h----hHhhcCCC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCc
Q 009647          225 P----LARMMLPN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN  297 (530)
Q Consensus       225 ~----L~~lL~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~  297 (530)
                      .    ++..+.++   ++-++..++|+++.++..-    ..+.  ...++|.+++.|.+++..|+..||++|.+++...+
T Consensus       455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            1    22334455   7899999999999999653    1233  35788999999988888999999999999986311


Q ss_pred             -------h-hHHHHH--hcCchHHHHHHHhcCC----CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHH
Q 009647          298 -------V-ATSLLV--KSGVLQLLVERLATSN----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK  363 (530)
Q Consensus       298 -------~-~~~~i~--~~g~l~~Lv~lL~~~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~  363 (530)
                             + ....+.  -..+++.|..++...+    .......++.+|+.++....+....+.       ..+++.|..
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-------~~l~~~L~~  601 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-------PQLLAQFIE  601 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-------HHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHH
Confidence                   1 011111  1235566666664321    111345777888877654333332232       236666666


Q ss_pred             Hhcc-----CcHhHHHHHHHHHHHHhcC-CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 009647          364 CLKS-----EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC  426 (530)
Q Consensus       364 lL~~-----~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~  426 (530)
                      .+..     .++..+..++-+|+.++.. .++....+. ..++|.+..+|.....+...++..+++.+.
T Consensus       602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            5532     3556777788888888765 434444333 347888889887766666666666666554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.77  E-value=0.00068  Score=76.85  Aligned_cols=341  Identities=11%  Similarity=0.080  Sum_probs=182.6

Q ss_pred             hHHHHH-HHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhh
Q 009647          152 DEQLLE-AAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM  229 (530)
Q Consensus       152 ~~~~~e-A~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l  229 (530)
                      +...+| |+++++.++.+-.+.....+ ..++.+..+ .+ +++.++..++|++|.++..-.... . .-..+++.|+..
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~-~~~~vr~~~~~~l~~~~~~l~~~~-~-~l~~vl~~l~~~  537 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SI-SNVQLADTVMFTIGALSEWLADHP-V-MINSVLPLVLHA  537 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CC-CSHHHHHHHHHHHHHTHHHHHHCH-H-HHTTTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CC-CcHHHHHHHHHHHHHHHHHHHhCH-H-HHHHHHHHHHHH
Confidence            444566 78999999976432111111 233322222 33 478899999999999885211111 1 224678888888


Q ss_pred             cCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--CHHHHHHHHHHHHHhhcCCc-hhHHHHHhc
Q 009647          230 MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSN-VATSLLVKS  306 (530)
Q Consensus       230 L~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~-~~~~~i~~~  306 (530)
                      |.+  +.++..|+++|.++|+... ......  ..++++.+..++...  +.+.+..+..+++.++...+ +.....+ .
T Consensus       538 l~~--~~V~~~A~~al~~l~~~~~-~~l~p~--~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~  611 (963)
T 2x19_B          538 LGN--PELSVSSVSTLKKICRECK-YDLPPY--AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-H  611 (963)
T ss_dssp             TTC--GGGHHHHHHHHHHHHHHTG-GGCTTT--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-H
T ss_pred             hCC--chHHHHHHHHHHHHHHHHH-HHHHhh--HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-H
Confidence            754  7899999999999996421 111111  234555566666642  56788888888988886432 3332222 2


Q ss_pred             CchHHHHHHHh---cCC-Cccch---hhhHHHHhhhhcCCcc-------------------ccchhcccCCCcchhhHHH
Q 009647          307 GVLQLLVERLA---TSN-SLQLL---IPVLRSLGNLVAGDSS-------------------TISDVLVPGHGITDQVIAV  360 (530)
Q Consensus       307 g~l~~Lv~lL~---~~~-~~~v~---~~al~~L~nl~~~~~~-------------------~~~~~i~~g~~~~~~~l~~  360 (530)
                      .+++.+...+.   ... +++..   ..++.+|+.+...-..                   ....+..    ....+++.
T Consensus       612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  687 (963)
T 2x19_B          612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV----VLQQVFQL  687 (963)
T ss_dssp             HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH----HHHHHHHH
Confidence            34444444442   111 22222   2455666555532110                   0011110    01346666


Q ss_pred             HHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh----cC-CChhHHHHHHHHHHHhcC--CCCC
Q 009647          361 LVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL----ST-SPFDIKKEVAYVLGNLCV--SPTE  431 (530)
Q Consensus       361 L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL----~~-~~~~v~~eA~~aL~nl~~--~~~~  431 (530)
                      +..++..  .+..+...+|.+++.++..-.+...     ..+|+++..+    .. ..+    ..+++++.++.  +...
T Consensus       688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~  758 (963)
T 2x19_B          688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEP  758 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCc
Confidence            6666643  3568899999999987542211111     2344444433    22 222    34455555543  2110


Q ss_pred             CCCCchhHHHHHHHHHhcCChHHHHhhhc---cCCHHHHHHHHHHHHHHHccCCCCcch-hH-HHHhchHHHHHHHhcCC
Q 009647          432 GEGKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMELVLRGMPNHEGT-KL-VEREDGIDAMERFQFHE  506 (530)
Q Consensus       432 ~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~i~~~~L~~L~~il~~~~~~~~~-~~-i~~~ggl~~L~~L~~~~  506 (530)
                        ...    ..+..+. ..++..++.++.   ..++++.......+..++..++..... .. +.  ..++.+.....+.
T Consensus       759 --~~~----~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~--~i~~~~~~~l~~~  829 (963)
T 2x19_B          759 --AHF----PPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVK--AVFQCAVLALKFP  829 (963)
T ss_dssp             --TTC----HHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHH--HHHHHHHHHTTCS
T ss_pred             --chH----HHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH--HHHHHHHHHcCCC
Confidence              010    1122111 112334444443   246999999999999999766431110 00 11  1233333445688


Q ss_pred             cHHHHHHHHHHHHhhcCC
Q 009647          507 NEDLRNMANGLVDKYFGE  524 (530)
Q Consensus       507 ~~~i~~~A~~il~~~f~~  524 (530)
                      +.++.+.|...+..++..
T Consensus       830 ~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          830 EAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             CHHHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999998887653

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.65  E-value=0.0045  Score=59.19  Aligned_cols=297  Identities=12%  Similarity=0.150  Sum_probs=175.8

Q ss_pred             HHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-c
Q 009647          198 QCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-R  276 (530)
Q Consensus       198 ~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-~  276 (530)
                      .+.-.| |+.-+....-|-++..+++..+...++-++.++.+..+..|...+..+.    .........+|.+++.+. +
T Consensus       262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks----L~~t~L~e~LPFi~~~i~~h  336 (619)
T 3c2g_A          262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA----LAKTPLENILPFLLRLIEIH  336 (619)
T ss_dssp             HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG----GGTSCCTTHHHHHHHHHHHC
T ss_pred             HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH----HhhccccccchHHHHHhccC
Confidence            334444 4444556778888999999999999999999999999999999885532    112224578999998887 7


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc-------------cchhhhHHHHhhhhcC-----
Q 009647          277 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-------------QLLIPVLRSLGNLVAG-----  338 (530)
Q Consensus       277 ~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~-------------~v~~~al~~L~nl~~~-----  338 (530)
                      +++++.......|+|.........+..+..|+++.|...+.+++..             .+..+++|++.|+.-.     
T Consensus       337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~  416 (619)
T 3c2g_A          337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTP  416 (619)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred             CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecC
Confidence            7889999999999999987766677778889999888877543321             1344567777766411     


Q ss_pred             C--------cc--ccchhcccCCCcchhhHHHHHHHhccCcH------hHHHHHHHHHHHHhcCC---HHHHHH----HH
Q 009647          339 D--------SS--TISDVLVPGHGITDQVIAVLVKCLKSEHR------VLKKEAAWVLSNIAAGS---VEHKQL----IH  395 (530)
Q Consensus       339 ~--------~~--~~~~~i~~g~~~~~~~l~~L~~lL~~~~~------~i~~~A~~~Lsnl~~~~---~~~~~~----li  395 (530)
                      +        .+  |...++      +..++..|+..|+.+..      ++|.......--+....   .+..-.    .-
T Consensus       417 NGqr~~~G~~EqQQVckFI------E~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~r  490 (619)
T 3c2g_A          417 NGETKTAGPNEKQQVCKFI------EIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENR  490 (619)
T ss_dssp             TSCCCCCCHHHHHHHHGGG------SHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTT
T ss_pred             CCccccCChHHHHHHHHHH------HHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhh
Confidence            0        01  112233      24677777777765421      33333333222221110   000000    11


Q ss_pred             hCCcHHHHHHHh-----cCCCh-------hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-
Q 009647          396 SSEALALLLHLL-----STSPF-------DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-  462 (530)
Q Consensus       396 ~~~~l~~Li~lL-----~~~~~-------~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-  462 (530)
                      ..+++..+.-.+     +..+.       .+.+.+...|..+...+    |..   .+...++   --|..=+++|++. 
T Consensus       491 k~NLvGHIciA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc----~~E---~qVAh~~---YsIsCPLnlLn~nQ  560 (619)
T 3c2g_A          491 KENLIGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQC----GAE---KEVAQYS---YSIDCPLNLLNGNQ  560 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHT----TCH---HHHHHTT---TTSCCGGGGGSSCC
T ss_pred             hhhhHHHHHHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHh----hhH---HHHHhhe---eeccCchhhhcccc
Confidence            123333333332     11111       12233444444443211    111   0111111   1233335667664 


Q ss_pred             -CHHHHHHHHHHHHHHHccCCCCcchhHHHHh--chHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          463 -DIEAARLGLQFMELVLRGMPNHEGTKLVERE--DGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       463 -d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~--ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                       .|..+.++|..-..|++.++--      .+.  ---..++.|.+|.|++|.+.|.+++.+|
T Consensus       561 ~KP~FI~NVL~VcDKILeHcP~~------Ad~W~i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          561 VKPTFIHNVLVVCDKILEHCPTR------ADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTH------HHHSCCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             cChHHHHHHHHHHHHHHHhCcch------hccceechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence             4778889999999999887631      000  0123577889999999999999999876

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.64  E-value=0.015  Score=65.65  Aligned_cols=335  Identities=12%  Similarity=0.114  Sum_probs=183.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc--CCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcH
Q 009647          104 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA--FGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP  181 (530)
Q Consensus       104 ~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~--~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~  181 (530)
                      .+.+...+-.++.++..+...-....      ...++.++..|.  .++.+.++..++|+++.++.--..+...+-..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            34566667777777777643321110      123444444442  1134666667999999998532223334447899


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhH----hhcCCC--ChhHHHHHHHHHHHhhcCCCCC
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA----RMMLPN--KGSTVRTAAWALSNLIKGPDPK  255 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~----~lL~~~--~~~~~~~a~~~L~nL~~~~~~~  255 (530)
                      .++..|.+   +.|+..|+++|.++|.+.   +..+.  ..++.++    .++..+  +...+..+.-+++.++..-.+.
T Consensus       533 ~l~~~l~~---~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          533 LVLHALGN---PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             HHHHHTTC---GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHhCC---chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            99999954   789999999999999643   32222  2344443    444442  5677888888999888542111


Q ss_pred             chhhHHHhhchHHHHHHHhc----cC-CHHHHH---HHHHHHHHhhcC----Cch-----------------hHHHHHhc
Q 009647          256 PATELIKVDGLLDAILRHLK----RA-DEELTT---EVAWVVVYLSAL----SNV-----------------ATSLLVKS  306 (530)
Q Consensus       256 ~~~~~v~~~~~l~~L~~lL~----~~-d~~v~~---~a~~~L~~L~~~----~~~-----------------~~~~i~~~  306 (530)
                      .....  ...+++.+...+.    .+ +++...   ..+.+|+.+...    .+.                 ..-.-+..
T Consensus       605 ~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (963)
T 2x19_B          605 EILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ  682 (963)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH
Confidence            11112  2345555444432    22 444333   344444444321    000                 00011222


Q ss_pred             CchHHHHHHHhc-CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHh----ccCcHhHHHHHHHHHH
Q 009647          307 GVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL----KSEHRVLKKEAAWVLS  381 (530)
Q Consensus       307 g~l~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL----~~~~~~i~~~A~~~Ls  381 (530)
                      .+.+.+..++.. ..+..+...++++++.++..-.....           ..+|.++..+    ....   ....+++++
T Consensus       683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----------~~l~~~~~~l~~~~~~~~---~~~~l~l~~  748 (963)
T 2x19_B          683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----------PMVPQLCEMLGRMYSTIP---QASALDLTR  748 (963)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----------GGHHHHHHHHHHHHHHSC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----------ccHHHHHHHHHHHHHcCC---ccHHHHHHH
Confidence            345555555532 23567888999999998743322221           2344444333    2211   124666777


Q ss_pred             HHhc--CCH----HHHHHHHhCCcHHHHHHHhc---CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC--
Q 009647          382 NIAA--GSV----EHKQLIHSSEALALLLHLLS---TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG--  450 (530)
Q Consensus       382 nl~~--~~~----~~~~~li~~~~l~~Li~lL~---~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g--  450 (530)
                      .++.  +..    ..+..+++. ++..++.++.   ...++++......+..++...      |       ..+....  
T Consensus       749 ~li~~f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~------~-------~~~~~~~~~  814 (963)
T 2x19_B          749 QLVHIFAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK------P-------DLFLCERLD  814 (963)
T ss_dssp             HHHHHHTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC------G-------GGGGCTTSC
T ss_pred             HHHHHhCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC------c-------HHHcCCccc
Confidence            7755  322    233333221 3445555554   245899999988888887532      1       1111122  


Q ss_pred             ---ChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          451 ---CLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       451 ---~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                         +++.++..|+..++.+...+++++..++....
T Consensus       815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~  849 (963)
T 2x19_B          815 VKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG  849 (963)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence               34455666788899999999999999987643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.64  E-value=0.00058  Score=65.82  Aligned_cols=189  Identities=15%  Similarity=0.094  Sum_probs=132.6

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhccc
Q 009647          270 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP  349 (530)
Q Consensus       270 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  349 (530)
                      ++.-|.+.+.+.+..++.-|..+...+......++..+++..|+... .+.+.+.+..+|++++++....+... .++. 
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~-gvvs-  199 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGML-GVVA-  199 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHH-HHHH-
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhcccccc-chhC-
Confidence            44555577788899999999985544677888999999999999988 46788999999999999986643322 2222 


Q ss_pred             CCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC----------CcHHHHHHHhc---CCChhHHH
Q 009647          350 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS----------EALALLLHLLS---TSPFDIKK  416 (530)
Q Consensus       350 g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~----------~~l~~Li~lL~---~~~~~v~~  416 (530)
                          ...++..+..++.+....|.+.|...|-+++..++.....+..+          ..+..|+.+|+   +++.+++.
T Consensus       200 ----~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          200 ----HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             ----CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             ----CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence                24688999999998888999999999999987665444433321          13778999997   77889998


Q ss_pred             HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC--CHHHHHH
Q 009647          417 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARL  469 (530)
Q Consensus       417 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~i~~~  469 (530)
                      .|...|--+..+..   + .....+.+..+-+.|+=..+...+...  |++++..
T Consensus       276 ~amtLIN~lL~~ap---d-~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          276 YTVTLINKTLAALP---D-QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHCS---S-HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHHhcCC---C-hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88776655544321   1 000123344555566666666666664  5665543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.60  E-value=0.0017  Score=62.57  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=118.9

Q ss_pred             HHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 009647          359 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL  438 (530)
Q Consensus       359 ~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~  438 (530)
                      ..++.-|.+++...++.+++-|..+...+...+..+++.+++..|+.+...++..++..++.|+.++....         
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v---------  191 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV---------  191 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH---------
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc---------
Confidence            33455555667777899999999966667789999999999999999999999999999999999997641         


Q ss_pred             HHHHHHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHH-hc------h---HHHHHHHhc---
Q 009647          439 IQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVER-ED------G---IDAMERFQF---  504 (530)
Q Consensus       439 ~~~~~~~l~-~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~-~g------g---l~~L~~L~~---  504 (530)
                        .-..-++ ....|..+..++.+.+..+++.+|+.|..+....+.  +...+.+ ..      |   ++.|..+..   
T Consensus       192 --~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~--~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~  267 (339)
T 3dad_A          192 --DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN--NAPLFIRAVNSVASTTGAPPWANLVSILEEKN  267 (339)
T ss_dssp             --HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred             --ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc--cchHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence              2233444 556888999999999999999999999999877643  2222222 22      2   566655554   


Q ss_pred             CCcHHHHHHHHHHHHhhcCCCC
Q 009647          505 HENEDLRNMANGLVDKYFGEDY  526 (530)
Q Consensus       505 ~~~~~i~~~A~~il~~~f~~~~  526 (530)
                      ..+.+++..|..+|.+.|..-+
T Consensus       268 ~~D~elq~~amtLIN~lL~~ap  289 (339)
T 3dad_A          268 GADPELLVYTVTLINKTLAALP  289 (339)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHHHhcCC
Confidence            6799999999999988876533

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.53  E-value=0.0028  Score=71.67  Aligned_cols=310  Identities=17%  Similarity=0.140  Sum_probs=165.6

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh--hhHHhhcCC--c
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ--EETKALLPA--L  180 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~--~~~~~i~~~--v  180 (530)
                      ++++.....++.++..+++   -.++..+++.+.++.+..+|..   +..+..|+.||+.+.+...  +....++..  +
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4677888899999999976   2456778888999999999974   5676679999999986543  222222221  1


Q ss_pred             HHHHHhhcC-CCCHHHHHHHHHHHHhhc-------CCC----chhHHHH--HhcCChhhhHhhcCCCChhHHHHHHHHHH
Q 009647          181 PLLIAHLGE-KSSSPVAEQCAWALGNVA-------GEG----EEFRNVL--LSQGALPPLARMMLPNKGSTVRTAAWALS  246 (530)
Q Consensus       181 ~~L~~lL~~-~~~~~v~~~a~~~L~nla-------~d~----~~~r~~~--~~~g~i~~L~~lL~~~~~~~~~~a~~~L~  246 (530)
                      ...+.-+.. ..+.++.+..+..+..++       .+.    ++.+...  .-.+.++.++.++.+++.++...+.-.+.
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~  357 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS  357 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            111222221 356776655444443322       111    1111111  11357888889998888777766655555


Q ss_pred             HhhcC----CCCCchhhHHH--hhchHHHHHHHhccCC------------H----HHHHHHHHHHHHhhc--CCchhHHH
Q 009647          247 NLIKG----PDPKPATELIK--VDGLLDAILRHLKRAD------------E----ELTTEVAWVVVYLSA--LSNVATSL  302 (530)
Q Consensus       247 nL~~~----~~~~~~~~~v~--~~~~l~~L~~lL~~~d------------~----~v~~~a~~~L~~L~~--~~~~~~~~  302 (530)
                      .+...    .......+...  ...+++.+++-+..++            .    +.+.+.. .+...+.  +.+.....
T Consensus       358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence            44421    10000111100  1233444443333211            1    2344444 3332222  11111111


Q ss_pred             HHhcCchHHHHHHHh--cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-----cCcHhHHHH
Q 009647          303 LVKSGVLQLLVERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-----SEHRVLKKE  375 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-----~~~~~i~~~  375 (530)
                      +.+ -+.+.+-..+.  .+.+...++.++.+|+.++.+-......+ ......-..+++.+..++.     +.++.|+..
T Consensus       437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~  514 (980)
T 3ibv_A          437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL  514 (980)
T ss_dssp             HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            111 01111222221  12245567889999999887643211111 0000012346777777766     678899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh------cCCChhHHHHHHHHHHHhcCCC
Q 009647          376 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------STSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       376 A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL------~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      +||+++..+.--..      +...+++++..+      .+++..++..|++++.++|..+
T Consensus       515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            99999987653211      123455555554      3467789999999999998744

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.26  E-value=0.013  Score=59.94  Aligned_cols=249  Identities=12%  Similarity=0.090  Sum_probs=161.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCc
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPAL  180 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v  180 (530)
                      ..|.++.=+.|.-|+-+||.++......       .|..       ...+ .   --|+++++-++-+.-          
T Consensus       181 ~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDRF----------  232 (800)
T 3oc3_A          181 DNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDKF----------  232 (800)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBCC----------
T ss_pred             HHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhccc----------
Confidence            4556889999999999999998765321       1221       1112 1   125666666663321          


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 009647          181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL  260 (530)
Q Consensus       181 ~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  260 (530)
                         -.+.++.--..|||.|+.+||.+ ..-+.-      ..++..|+..+..+.-+++..+...|.++. .    ...+ 
T Consensus       233 ---GDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-D----LL~~-  296 (800)
T 3oc3_A          233 ---NDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-E----FVED-  296 (800)
T ss_dssp             ---BBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-G----GCCC-
T ss_pred             ---cccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-H----HHHH-
Confidence               11222222357999999999998 543332      344555555556778899999999999982 1    1111 


Q ss_pred             HHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccch-hhhHHHHhhhhcCC
Q 009647          261 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-IPVLRSLGNLVAGD  339 (530)
Q Consensus       261 v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~-~~al~~L~nl~~~~  339 (530)
                        ..+++|.++..|.+.|++|+..|+.+|.-++  .++...     .++..+-+.|.+.++.+.. .+.+..|+.+++.+
T Consensus       297 --Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p  367 (800)
T 3oc3_A          297 --KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYREN  367 (800)
T ss_dssp             --HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC
Confidence              3578899999999999999999999999998  233332     2345566666544443333 35677788887766


Q ss_pred             ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHH-HHhcCCChhHHHHH
Q 009647          340 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL-HLLSTSPFDIKKEV  418 (530)
Q Consensus       340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li-~lL~~~~~~v~~eA  418 (530)
                      ....   .      ....+|.|.+++.|.-.+||+.+..++..+.  ...         ++..+. ++|-..+.+++..+
T Consensus       368 ~~a~---~------dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS  427 (800)
T 3oc3_A          368 PELS---I------PPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMA  427 (800)
T ss_dssp             TTCC---C------CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHH
T ss_pred             cccc---c------ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHH
Confidence            3211   1      2369999999999999999999999998876  211         233333 34556677777766


Q ss_pred             HHHH
Q 009647          419 AYVL  422 (530)
Q Consensus       419 ~~aL  422 (530)
                      ..+-
T Consensus       428 ~~VW  431 (800)
T 3oc3_A          428 IKLL  431 (800)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.99  E-value=0.25  Score=56.00  Aligned_cols=339  Identities=12%  Similarity=0.117  Sum_probs=174.2

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHH-HHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHhh---c-C
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVL-VQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKAL---L-P  178 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~L-v~lL~~~~~~~~~~eA~~~L~nia~~~~~-~~~~i---~-~  178 (530)
                      +++++....++.+++.+++=   .++..+++.++++.+ ..+|.   .+..+-.|+.||+.|.+...+ ....+   . .
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            46677777788888888652   345778899999988 47775   356666699999999875321 11111   1 1


Q ss_pred             CcHHHHHhhc------------CCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc-C-------ChhhhHhhcCCCChhHH
Q 009647          179 ALPLLIAHLG------------EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-G-------ALPPLARMMLPNKGSTV  238 (530)
Q Consensus       179 ~v~~L~~lL~------------~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g-------~i~~L~~lL~~~~~~~~  238 (530)
                      .+..+-.++.            ...+.+.....+..+..+..   .....+... +       ++..|+.+-..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e---~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLK---EHGQLLEKRLNLREALMEALHYMLLVSEVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHH---HHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHH---HHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHH
Confidence            2211212221            11223444444445544432   222222221 1       23334444456788887


Q ss_pred             HHHHHHHH----HhhcCCC----CC-----------chhhHHHhhchHHHHHHHh----ccCCH----------------
Q 009647          239 RTAAWALS----NLIKGPD----PK-----------PATELIKVDGLLDAILRHL----KRADE----------------  279 (530)
Q Consensus       239 ~~a~~~L~----nL~~~~~----~~-----------~~~~~v~~~~~l~~L~~lL----~~~d~----------------  279 (530)
                      +.+.-.-.    .|.....    ..           +.+..+ -.+++..|..++    ..+++                
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~-y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQL-YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHT-THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHH-HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            77654433    3332110    01           011110 123333333322    21110                


Q ss_pred             ----H--HHHHHHHHHHHhhcCC-chhHHHHHhcCchHHHHHHHhcC-CCccchhhhHHHHhhhhcCCcc-ccchhcccC
Q 009647          280 ----E--LTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSLGNLVAGDSS-TISDVLVPG  350 (530)
Q Consensus       280 ----~--v~~~a~~~L~~L~~~~-~~~~~~i~~~g~l~~Lv~lL~~~-~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g  350 (530)
                          +  +....--+|.+++.-. .+....     ..+.+-+.+..+ .+...+..+|+++|.|+..-.. ....++   
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L---  519 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL---  519 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH---
T ss_pred             hhcchHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH---
Confidence                0  1111222344444311 222221     234444444221 2456678999999999843322 122222   


Q ss_pred             CCcchhhHHHHHHHhccC-----cHhHHHHHHHHHHHHhcC---CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHH
Q 009647          351 HGITDQVIAVLVKCLKSE-----HRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL  422 (530)
Q Consensus       351 ~~~~~~~l~~L~~lL~~~-----~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL  422 (530)
                          ..+++.|+.+..+.     +..++...||++|..+.-   .++....     ++..|+..+...++.|+..||.|+
T Consensus       520 ----p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af  590 (1073)
T 3gjx_A          520 ----VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTF  590 (1073)
T ss_dssp             ----HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred             ----HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Confidence                25777777777654     335667788999876543   3333332     455677777888899999999999


Q ss_pred             HHhcCCCCCCCCCchhHHHHHHHHHh--cC----ChHHHHhh----hccCCHHHHHHHHHHHHHHHccCCC
Q 009647          423 GNLCVSPTEGEGKPKLIQEHLVSLVG--RG----CLSGFIDL----VRSADIEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       423 ~nl~~~~~~~~~~~~~~~~~~~~l~~--~g----~i~~L~~l----L~~~d~~i~~~~L~~L~~il~~~~~  483 (530)
                      ..+|..+.             ..++.  .|    .+..+++.    ...-+++-+....+++..++...+.
T Consensus       591 ~~i~~~C~-------------~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~  648 (1073)
T 3gjx_A          591 IKIAQKCR-------------RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD  648 (1073)
T ss_dssp             HHHHHHTG-------------GGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHH-------------HHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence            99987542             11211  11    22222222    2223466666677888888876654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.95  E-value=0.11  Score=59.26  Aligned_cols=111  Identities=13%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             HHHHHHHhc--cCcHhHHHHHHHHHHHHhcCCHHHH-HHHHhCCcHHHHHHHhcC-----CChhHHHHHHHHHHHhcCCC
Q 009647          358 IAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLST-----SPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       358 l~~L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~~~~-~~li~~~~l~~Li~lL~~-----~~~~v~~eA~~aL~nl~~~~  429 (530)
                      ++.+...+.  +.+...+..|+|+++.++.+..... ..++. .+++.|..+...     +.+.++..++|+++.++.--
T Consensus       453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~  531 (1049)
T 3m1i_C          453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL  531 (1049)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence            334444443  2456788999999999976533221 12111 245555554432     23445657999999875310


Q ss_pred             CCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccC
Q 009647          430 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       430 ~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~  481 (530)
                                ..+-.++  ..+++.++..+..+++.+...|..++.++++.+
T Consensus       532 ----------~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          532 ----------KAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             ----------HHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------HhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence                      0111122  135667777888888999999999999998754

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.92  E-value=0.076  Score=59.93  Aligned_cols=339  Identities=13%  Similarity=0.081  Sum_probs=177.2

Q ss_pred             hHHHHH-HHHHHHHHhcCChhhHHhh------c-CCcHHHHHhhc----CCCCHHHHHHHHHHHHhhcCCCchhHHHHHh
Q 009647          152 DEQLLE-AAWCLTNIAAGKQEETKAL------L-PALPLLIAHLG----EKSSSPVAEQCAWALGNVAGEGEEFRNVLLS  219 (530)
Q Consensus       152 ~~~~~e-A~~~L~nia~~~~~~~~~i------~-~~v~~L~~lL~----~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~  219 (530)
                      +....| |+.+|..++.+-......+      . ..++.+..++.    ..+++.|+..++|+++..+..-..      .
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~  529 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E  529 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence            455577 7889899886543222111      1 13445555544    137899999999999999864322      2


Q ss_pred             cCChhhhHhhcC------CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CCH--------H
Q 009647          220 QGALPPLARMML------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADE--------E  280 (530)
Q Consensus       220 ~g~i~~L~~lL~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~-----~d~--------~  280 (530)
                      ...+++++..+-      +++..++..|+.++.++|+...+.... .  ...++..+-.+|..     .++        +
T Consensus       530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~--~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~  606 (980)
T 3ibv_A          530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-Y--TESSLAMLGDLLNISVSPVTDMDAPVPTLNS  606 (980)
T ss_dssp             CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-S--HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred             chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-H--HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence            245566555443      467889999999999999764322111 1  11233333333431     111        1


Q ss_pred             --------HHHHHHHHHHHhhc---CCchhHHHHHhcCchHHHHHHHh----cCCCc-c---chhhhHHHHhhhhcCCcc
Q 009647          281 --------LTTEVAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLA----TSNSL-Q---LLIPVLRSLGNLVAGDSS  341 (530)
Q Consensus       281 --------v~~~a~~~L~~L~~---~~~~~~~~i~~~g~l~~Lv~lL~----~~~~~-~---v~~~al~~L~nl~~~~~~  341 (530)
                              -+.....+++.|..   .+.+.....+ ..+++.++.-+.    ..... .   .....+.++|.++.+-..
T Consensus       607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l-~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~  685 (980)
T 3ibv_A          607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYC-DSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA  685 (980)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred             hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence                    13334444555542   1233322222 234455444332    11111 1   122567788888876432


Q ss_pred             cc------chhcccCCCcchhhHHHHHHHhc--cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc-CCCh
Q 009647          342 TI------SDVLVPGHGITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPF  412 (530)
Q Consensus       342 ~~------~~~i~~g~~~~~~~l~~L~~lL~--~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~-~~~~  412 (530)
                      ..      ..++       ..+++.+...|.  ..+..||..++.++..+...-...+     ...+|.++..+- +-+.
T Consensus       686 ~~~~~~p~~~~f-------~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~  753 (980)
T 3ibv_A          686 RGSEEVAWLASF-------NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDM  753 (980)
T ss_dssp             CC-CCCSHHHHH-------HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCT
T ss_pred             ccCCCCcHHHHH-------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCH
Confidence            21      1111       246666666665  4577999999999999987654432     236777777653 3244


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC---------HHHHHHHHHHHHHHHccCCC
Q 009647          413 DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD---------IEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       413 ~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d---------~~i~~~~L~~L~~il~~~~~  483 (530)
                      .--...+|.++.++..-.   ..   +...+..+.. -++..+..+|..++         ..+.+.-+.+|..|+...-.
T Consensus       754 ~e~~~fL~l~~qli~~f~---~~---~~~~l~~ll~-~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~  826 (980)
T 3ibv_A          754 NELVDVLSFISQLIHIYK---DN---MMEITNRMLP-TLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG  826 (980)
T ss_dssp             TTHHHHHHHHHHHHHHTT---TT---SHHHHHHHHH-HHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHH-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            455678888888875321   11   0122222221 13445555666432         22555556677777653211


Q ss_pred             CcchhHHHH--hchH----HHHHHH-hcCCcHHHHHHHHHHHHhhc
Q 009647          484 HEGTKLVER--EDGI----DAMERF-QFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       484 ~~~~~~i~~--~ggl----~~L~~L-~~~~~~~i~~~A~~il~~~f  522 (530)
                         ...+-+  .+-+    ..|... ..++++..++.|..++.++.
T Consensus       827 ---~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v  869 (980)
T 3ibv_A          827 ---SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV  869 (980)
T ss_dssp             ---GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred             ---hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence               111112  1222    233222 23467889999988888763

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.85  E-value=0.12  Score=49.67  Aligned_cols=208  Identities=16%  Similarity=0.183  Sum_probs=147.9

Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccCCHHHHHHHHHHHHH
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVY  291 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~v~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  291 (530)
                      ..+...+.+..|+..|..=+.+.++.++-.++++.+....  .+..+.+. ...++..|++.-  +++++...+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence            3455667888888888888899999999999999886422  12223332 123333333333  345666666666666


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHh
Q 009647          292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV  371 (530)
Q Consensus       292 L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~  371 (530)
                      +.. .+.....++..+.+..+.+++ ..++-++...|..++.-+.+.........+..-   -..++..+..||.+++.-
T Consensus       150 cir-~e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n---yd~Ff~~y~~Ll~S~NYV  224 (341)
T 1upk_A          150 CIR-HEPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH---YDRFFSEYEKLLHSENYV  224 (341)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHTTCSSHH
T ss_pred             HHH-hHHHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh---HHHHHHHHHHHhcCCcch
Confidence            665 566667778888888888888 578889999999999988877654443443210   124677888899999999


Q ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647          372 LKKEAAWVLSNIAAG--SVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~--~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      +|+.+...|+.|...  +.......+. ..-+..++.+|++.+..+|.||--+.--++.++
T Consensus       225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            999999999999764  2233333333 345888999999999999999999998888765

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.016  Score=55.23  Aligned_cols=188  Identities=14%  Similarity=0.142  Sum_probs=120.7

Q ss_pred             HHHHHhcCCCccchhhhHHHHhhhhcCCcccc--chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--
Q 009647          312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTI--SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--  387 (530)
Q Consensus       312 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~--~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~--  387 (530)
                      +-+.| .|.+...+..|+..|..+........  ...+..    -....+.+...+.+.+..+...++-++..++...  
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~----~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQI----YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CC----TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence            44566 58888999999999988875543211  111100    0135666778888899999999999999887532  


Q ss_pred             ----HHHHHHHHhCCcHHHHHHH-hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC
Q 009647          388 ----VEHKQLIHSSEALALLLHL-LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA  462 (530)
Q Consensus       388 ----~~~~~~li~~~~l~~Li~l-L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~  462 (530)
                          .......+ ..++|.|+.- +.++...++..|..++..++....    .+    ..        +++.+...+..+
T Consensus        89 ~~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----~~----~~--------~~e~l~~~l~~K  151 (278)
T 4ffb_C           89 SSLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----SI----TQ--------SVELVIPFFEKK  151 (278)
T ss_dssp             --CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----SS----HH--------HHHHHGGGGGCS
T ss_pred             hhcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----cH----HH--------HHHHHHHHHhcc
Confidence                11122222 2367777764 788888899888888877764321    11    11        235677788999


Q ss_pred             CHHHHHHHHHHHHHHHccC-CCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          463 DIEAARLGLQFMELVLRGM-PNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       463 d~~i~~~~L~~L~~il~~~-~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      +|+++..++..|..++... ......+... ...+..+-.+..|.|++|++.|..++-.+|
T Consensus       152 npkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          152 LPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999999999988642 2211111110 112334666789999999999988875544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.018  Score=54.90  Aligned_cols=191  Identities=15%  Similarity=0.090  Sum_probs=124.3

Q ss_pred             ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh-HH-HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCch-
Q 009647          222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE-LI-KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV-  298 (530)
Q Consensus       222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~-~v-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-  298 (530)
                      -+| |-.-|.+.+...+..+.-.|..+..........+ .+ .-....+.+-+.+.+.+..++..++.++..++..... 
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            355 5677888899999999998888775421111111 11 0124456677788888899999999999888753211 


Q ss_pred             ----hHHHHHhcCchHHHHHH-HhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647          299 ----ATSLLVKSGVLQLLVER-LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  373 (530)
Q Consensus       299 ----~~~~i~~~g~l~~Lv~l-L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~  373 (530)
                          ......-..+++.|++- | .+....++..++.++-.++......            ..+++.+...+.+.++.++
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~------------~~~~e~l~~~l~~Knpkv~  156 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSI------------TQSVELVIPFFEKKLPKLI  156 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSS------------HHHHHHHGGGGGCSCHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcH------------HHHHHHHHHHHhccCHHHH
Confidence                11111223466777765 4 4566677788888887776433211            1366778888999999999


Q ss_pred             HHHHHHHHHHhcC--CH-HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          374 KEAAWVLSNIAAG--SV-EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       374 ~~A~~~Lsnl~~~--~~-~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      .+++..|..+...  .. ......+. .+++.+..+|.+.++.||.+|..++..+..
T Consensus       157 ~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          157 AAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            9999888887532  11 11122222 255677888999999999999999988754

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.48  E-value=0.036  Score=51.34  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=102.7

Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL  443 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~  443 (530)
                      +.....+++.||..|.. +......++.+ +.+..|...|.++.+.+++.|+..|+-+|..+.+ .| .. .+.+   +.
T Consensus        67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~-~G~~~-~VL~Al~~~  143 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP-EDMNE-RVLEAMTER  143 (233)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSS-SCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC-CChHH-HHHHHHHHH
Confidence            34677888999998865 45666666654 6889999999999999999999999888875421 13 21 1111   11


Q ss_pred             HHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhchHHHHHHHhcCCcHHHHHHHH
Q 009647          444 VSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMAN  515 (530)
Q Consensus       444 ~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~ggl~~L~~L~~~~~~~i~~~A~  515 (530)
                      ...-+..-..++++.|.. .+.+....++..+..++...++-..    +..+..+|-.+.|+.|...+++++..+-.
T Consensus       144 ~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          144 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            122234567778888874 6678888899999998877655332    35666888888999999999998876654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.22  E-value=0.92  Score=43.57  Aligned_cols=188  Identities=15%  Similarity=0.135  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHH
Q 009647          282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL  361 (530)
Q Consensus       282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L  361 (530)
                      ...+.-. .+|.-.+...++-++..+++..+.-.. ..++.++...-+..|-..+...   .-.....     ...+|.+
T Consensus       260 vtR~FDL-L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak---sL~~t~L-----~e~LPFi  329 (619)
T 3c2g_A          260 IIRTFDL-LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK---ALAKTPL-----ENILPFL  329 (619)
T ss_dssp             HHHHHHH-HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG---GGGTSCC-----TTHHHHH
T ss_pred             HHHHHHH-HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH---HHhhccc-----cccchHH
Confidence            3344444 455545667788888888898888777 5778788777777777665332   2222221     3588988


Q ss_pred             HHHhc-cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC-------CChhHHHHHHHHHHHhcC------
Q 009647          362 VKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-------SPFDIKKEVAYVLGNLCV------  427 (530)
Q Consensus       362 ~~lL~-~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~-------~~~~v~~eA~~aL~nl~~------  427 (530)
                      ++.+. |++.+|.......|||..++........+..|+++.|-..+..       .+..-++.||..++|...      
T Consensus       330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL  409 (619)
T 3c2g_A          330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL  409 (619)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence            88884 6778999999999999999997777778899999999887633       233456677777777532      


Q ss_pred             ---CCCCCCC----CchhHHHHHHHHHhcCChHHHHhhhccCC------HHHHHHHHHHHHHHHcc
Q 009647          428 ---SPTEGEG----KPKLIQEHLVSLVGRGCLSGFIDLVRSAD------IEAARLGLQFMELVLRG  480 (530)
Q Consensus       428 ---~~~~~~~----~~~~~~~~~~~l~~~g~i~~L~~lL~~~d------~~i~~~~L~~L~~il~~  480 (530)
                         -+..+|.    .+.+ ++|+..+++..+++.|...|....      -++....|+.+..+++.
T Consensus       410 MmWIPm~NGqr~~~G~~E-qQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT  474 (619)
T 3c2g_A          410 MMWIPTPNGETKTAGPNE-KQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT  474 (619)
T ss_dssp             GGGSCCTTSCCCCCCHHH-HHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEecCCCccccCChHH-HHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC
Confidence               1111111    1222 356777888899999999988643      25566777777777763

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.99  E-value=0.076  Score=48.48  Aligned_cols=180  Identities=13%  Similarity=0.039  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      .+.++.+-+..+..+ ......++..+++-++      .     ...++..-.+.+ ++.++.++-|+..|+.. .... 
T Consensus        38 ~~~~~~~~~~~~~~g-f~~~~~~a~~~~~~~~------~-----~~~~~la~~L~~-~~~deVR~~Av~lLg~~-~~~~-  102 (240)
T 3l9t_A           38 YVARLEKDFSLIEHG-FKEEEQRALTDYKSND------G-----EYIKKLAFLAYQ-SDVYQVRMYAVFLFGYL-SKDK-  102 (240)
T ss_dssp             HHHHHHHHHTC------CHHHHHHHHHHHHSC------H-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHT-TTSH-
T ss_pred             HHHHHHHHHHHhhcc-cHHHHHHHHHHHHhCC------H-----HHHHHHHHHHHh-CcchHHHHHHHHHHHhc-cCcH-
Confidence            344444433322222 3345566666666432      1     112333344444 45577877888888877 3111 


Q ss_pred             hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcC-CCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhc
Q 009647          172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG-EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK  250 (530)
Q Consensus       172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~-d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~  250 (530)
                            ..++.+...+...++-.|++.++-+++.++. .+++        ..++.+.....+++..+++.|+-.+.-.|.
T Consensus       103 ------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~  168 (240)
T 3l9t_A          103 ------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTN  168 (240)
T ss_dssp             ------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG
T ss_pred             ------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc
Confidence                  2455555534444789999999999999984 3333        156778888899999999999887755443


Q ss_pred             CCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 009647          251 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK  305 (530)
Q Consensus       251 ~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~  305 (530)
                      ....+..     -..++|.|-.+..+++.-|+..+.|.|..++..+++.+..+++
T Consensus       169 ~~~~k~d-----p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          169 RPYFKEN-----PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK  218 (240)
T ss_dssp             STTTTTC-----HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchhhcC-----HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence            2111111     2356777888888888889999999999999987776665554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.98  E-value=0.11  Score=48.73  Aligned_cols=134  Identities=11%  Similarity=0.103  Sum_probs=93.3

Q ss_pred             CCCccchhhhHHHHhhhhcC---Cc-cccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC-CHHHHHH
Q 009647          319 SNSLQLLIPVLRSLGNLVAG---DS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQL  393 (530)
Q Consensus       319 ~~~~~v~~~al~~L~nl~~~---~~-~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~-~~~~~~~  393 (530)
                      +++..+...++.+|..+...   .+ .....-.       .-++|.|+.-+.+.+..+|..+-.++..+..- ++.    
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-------~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----  166 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV-------SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----  166 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----
Confidence            45666666666666665421   11 1111111       24899999999999888988877777655431 211    


Q ss_pred             HHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh---HHHHhhhccCCHHHHHHH
Q 009647          394 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL---SGFIDLVRSADIEAARLG  470 (530)
Q Consensus       394 li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i---~~L~~lL~~~d~~i~~~~  470 (530)
                          .+++.+.+-+.+.+..+|.+++..+..+....    |.+           ....+   +.+..++.+.|..+...|
T Consensus       167 ----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~----G~~-----------~~~~l~~~~~ia~ll~D~d~~VR~aA  227 (266)
T 2of3_A          167 ----KMTPMLLDALKSKNARQRSECLLVIEYYITNA----GIS-----------PLKSLSVEKTVAPFVGDKDVNVRNAA  227 (266)
T ss_dssp             ----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH----CSG-----------GGGGGCHHHHHGGGGGCSSHHHHHHH
T ss_pred             ----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc----CCC-----------ccccccchHHHHHHHcCCCHHHHHHH
Confidence                25677888889999999999999999987531    210           23467   999999999999999999


Q ss_pred             HHHHHHHHccCC
Q 009647          471 LQFMELVLRGMP  482 (530)
Q Consensus       471 L~~L~~il~~~~  482 (530)
                      +.++..+....+
T Consensus       228 l~~lve~y~~~G  239 (266)
T 2of3_A          228 INVLVACFKFEG  239 (266)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999887765443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.73  E-value=0.1  Score=48.92  Aligned_cols=172  Identities=13%  Similarity=0.110  Sum_probs=113.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc---CCCChHHHHHHHHHHHHHh----cCChhhHH
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA---FGSPDEQLLEAAWCLTNIA----AGKQEETK  174 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~---~~~~~~~~~eA~~~L~nia----~~~~~~~~  174 (530)
                      .+.+.|...+++|+..|.+.++...    ..++.  .+..++..+.   .+++..+...++.+|..+.    .....-..
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~----~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSP----RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCH----HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhCh----HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            3458899999999999999876432    23332  2333344332   2344555555555555543    21111122


Q ss_pred             hhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          175 ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       175 ~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      .-. -.+|.|+.-+.+ +.+.+|+.+-.++..++.-.+.       ..+.+.++.-+++.+...+..++-.+.++.....
T Consensus       128 ~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          128 EEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            222 368999999987 6788999888877766542111       1245667777788899999999988888875332


Q ss_pred             CCchhhHHHhhchH---HHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          254 PKPATELIKVDGLL---DAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       254 ~~~~~~~v~~~~~l---~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      ..+       ..++   |.+.+++.+.|..|+..|..|+..+-.
T Consensus       200 ~~~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          200 ISP-------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             SGG-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             CCc-------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            221       2467   999999999999999999999886654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.53  E-value=0.32  Score=48.46  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=109.1

Q ss_pred             hhHHHHHHHhcc-----------CcHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHH
Q 009647          356 QVIAVLVKCLKS-----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLG  423 (530)
Q Consensus       356 ~~l~~L~~lL~~-----------~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~  423 (530)
                      +++..|+.+|..           .+..+..+++.||..|.. +......++.+ ..+..|+..|.+..+.+++.|+..|+
T Consensus       109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            456666666631           134677888899998865 44666767754 77999999999999999999999999


Q ss_pred             HhcCCCCCCCCCchhHHH---HHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhch
Q 009647          424 NLCVSPTEGEGKPKLIQE---HLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDG  495 (530)
Q Consensus       424 nl~~~~~~~~~~~~~~~~---~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~gg  495 (530)
                      -+|..+.+.+|.+ .+.+   +.....+..-..++++.|.. .+.+....++..|..++...++-..    +..+..+|.
T Consensus       188 ~lc~~~~~~gG~~-~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl  266 (383)
T 3eg5_B          188 ALCILPQPEDMNE-RVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  266 (383)
T ss_dssp             HHHTCCSSTTHHH-HHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred             HHHhCcCcCCcHH-HHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence            9887542111211 0111   11222344568889999987 6788888999999999887665333    356678888


Q ss_pred             HHHHHHHhcCCcHHHHHH
Q 009647          496 IDAMERFQFHENEDLRNM  513 (530)
Q Consensus       496 l~~L~~L~~~~~~~i~~~  513 (530)
                      .+.|+.|...+++++..+
T Consensus       267 ~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          267 HQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHH
Confidence            889999988888877654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.47  E-value=0.31  Score=48.59  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=101.0

Q ss_pred             cHhHHHHHHHHHHHHhcCCHHHHHHHHhC-CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 009647          369 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL  443 (530)
Q Consensus       369 ~~~i~~~A~~~Lsnl~~~~~~~~~~li~~-~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~  443 (530)
                      +.....+++.||..|... ......++.+ +.+..|...|.+..+.+++.|+..|+-+|..+.+. | .. .+.+   +.
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~-G~~~-~VL~Al~~~  147 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNE-RVLEAMTER  147 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST-THHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCC-ChHH-HHHHHHHHH
Confidence            346788889999988654 4556666654 78899999999999999999999888888754211 2 11 0111   11


Q ss_pred             HHHHhcCChHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhchHHHHHHHhcCCcHHHHHH
Q 009647          444 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM  513 (530)
Q Consensus       444 ~~l~~~g~i~~L~~lL~-~~d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~ggl~~L~~L~~~~~~~i~~~  513 (530)
                      ...-+..-..++++.|. ..+.+....++.++..|+...++-..    +..+..+|-.+.|+.|...+++++..+
T Consensus       148 ~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          148 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            12223456777888887 46678888899999999887665332    356777888889999999898887655

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.16  E-value=1.8  Score=49.05  Aligned_cols=148  Identities=14%  Similarity=0.154  Sum_probs=84.2

Q ss_pred             HHHHhcCCCChHHHHH-HHHHHHHHhcCChh-hHHhhc-CCcHHHHHhhcCCC----CHHHHHHHHHHHHhhcCCCchhH
Q 009647          142 LVQCLAFGSPDEQLLE-AAWCLTNIAAGKQE-ETKALL-PALPLLIAHLGEKS----SSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       142 Lv~lL~~~~~~~~~~e-A~~~L~nia~~~~~-~~~~i~-~~v~~L~~lL~~~~----~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      |-+.+..+......+| ++|+++.||..-.+ .-..++ ..++.|+.+.....    .+.++...+|++|..+.--....
T Consensus       482 l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~  561 (1073)
T 3gjx_A          482 LQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW  561 (1073)
T ss_dssp             HHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH
T ss_pred             HHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH
Confidence            3333333334466677 79999999854432 222333 67888888775421    23355566799998764211111


Q ss_pred             HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH-----hhchHHHHHHH----hccCCHHHHHHH
Q 009647          215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK-----VDGLLDAILRH----LKRADEELTTEV  285 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~-----~~~~l~~L~~l----L~~~d~~v~~~a  285 (530)
                      .  .-...+..|+..+..+++.++..|+-++..+|.....    .++.     ....++.++..    ...-+++-....
T Consensus       562 ~--~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~----~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l  635 (1073)
T 3gjx_A          562 K--FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR----HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF  635 (1073)
T ss_dssp             H--HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG----GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            1  1123455666777778899999999999999975321    1110     01233333332    223345556666


Q ss_pred             HHHHHHhhcC
Q 009647          286 AWVVVYLSAL  295 (530)
Q Consensus       286 ~~~L~~L~~~  295 (530)
                      ..+++++...
T Consensus       636 yeav~~vi~~  645 (1073)
T 3gjx_A          636 YEAVGYMIGA  645 (1073)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            6667777764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.99  E-value=0.24  Score=50.85  Aligned_cols=243  Identities=18%  Similarity=0.128  Sum_probs=150.3

Q ss_pred             hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-------cCC---HHHHHHHHHHHHHhh
Q 009647          224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------RAD---EELTTEVAWVVVYLS  293 (530)
Q Consensus       224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~-------~~d---~~v~~~a~~~L~~L~  293 (530)
                      ..|+.-|-++.-+++--|+-+|..+.+.......+.......+.-.++-++.       .+|   ..|++.|+.+|+.+ 
T Consensus       177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-  255 (800)
T 3oc3_A          177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-  255 (800)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence            3444445578899999999999998864321000000001122333333332       122   36888999998888 


Q ss_pred             cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHH
Q 009647          294 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK  373 (530)
Q Consensus       294 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~  373 (530)
                      ..-++.      ..++..|+..+ ..+..+++--++-.|.++   . +.... +       .++++.++..|.+.+.+||
T Consensus       256 ~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL---~-DLL~~-L-------d~Vv~aVL~GL~D~DDDVR  316 (800)
T 3oc3_A          256 YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL---K-EFVED-K-------DGLCRKLVSLLSSPDEDIK  316 (800)
T ss_dssp             TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT---G-GGCCC-H-------HHHHHHHHHHTTCSSHHHH
T ss_pred             HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH---H-HHHHH-H-------HHHHHHHHhhcCCcccHHH
Confidence            432222      34555555544 456778888888888887   1 11111 2       3789999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCC-h-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCC
Q 009647          374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP-F-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC  451 (530)
Q Consensus       374 ~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~-~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~  451 (530)
                      ..|+-+|.-++  .++.+..+     +..+.+.|.+-+ - .-.......|+.++..+.....             +...
T Consensus       317 AVAAetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~-------------dp~L  376 (800)
T 3oc3_A          317 LLSAELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI-------------PPER  376 (800)
T ss_dssp             HHHHHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC-------------CSGG
T ss_pred             HHHHHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc-------------ChHH
Confidence            99999999998  23333333     334555554322 1 1223344566666654321111             1368


Q ss_pred             hHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHH-HHHHhcCCcHHHHHHHHHHHH
Q 009647          452 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQFHENEDLRNMANGLVD  519 (530)
Q Consensus       452 i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~-L~~L~~~~~~~i~~~A~~il~  519 (530)
                      +|.|.-+|...-+.++..++++|..++    +         ...+.. .+++.-.++++|.+.+.++..
T Consensus       377 VPRL~PFLRHtITSVR~AVL~TL~tfL----~---------~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          377 LKDIFPCFTSPVPEVRTSILNMVKNLS----E---------ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTGGGGTCSSHHHHHHHHHHTTTCC----C---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHHHH----h---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            899999999999999999999887765    1         112222 355677889999999988775

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.96  E-value=0.48  Score=53.89  Aligned_cols=174  Identities=16%  Similarity=0.144  Sum_probs=100.7

Q ss_pred             HHHHHhcCC---hhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHH
Q 009647          214 RNVLLSQGA---LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVA  286 (530)
Q Consensus       214 r~~~~~~g~---i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~  286 (530)
                      .|.+...|-   +..+..++.+.+....+ |+++|..+....  .|..      ..+..+..++.+    .++.+...++
T Consensus       346 lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~--~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~  416 (1056)
T 1lsh_A          346 LDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ--QATR------ESLSYARELLNTSFIRNRPILRKTAV  416 (1056)
T ss_dssp             HHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC--CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred             HHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC--CCCH------HHHHHHHHHHhCcccccCHHHHHHHH
Confidence            344444443   44455556665544444 445554443322  2323      334455566653    3556777777


Q ss_pred             HHHHHhhcC---CchhHHHHHhcCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH
Q 009647          287 WVVVYLSAL---SNVATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV  360 (530)
Q Consensus       287 ~~L~~L~~~---~~~~~~~i~~~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~  360 (530)
                      -+++.|...   ....    +....++.+.+.|.   ...+..-..-+|++|||+-..                 ..++.
T Consensus       417 La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------------~~l~~  475 (1056)
T 1lsh_A          417 LGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------------NSIKK  475 (1056)
T ss_dssp             HHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------------GGHHH
T ss_pred             HHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------------hHHHH
Confidence            777666531   1111    11122344443332   345566678899999998532                 26667


Q ss_pred             HHHHhcc-------CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHh--cCCChhHHHHHHHHHHHh
Q 009647          361 LVKCLKS-------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNL  425 (530)
Q Consensus       361 L~~lL~~-------~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL--~~~~~~v~~eA~~aL~nl  425 (530)
                      |.+++..       ....++..|+|+|.+++...+..++        +.+..++  ...++++|..|+.+|...
T Consensus       476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t  541 (1056)
T 1lsh_A          476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES  541 (1056)
T ss_dssp             HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence            7777642       1347889999999999876655443        4566777  456788999999988653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.56  E-value=0.025  Score=52.71  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=27.1

Q ss_pred             hhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHH
Q 009647          224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAW  287 (530)
Q Consensus       224 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~  287 (530)
                      +.|..++++++..++..++..+        +.            +.+..++.++++.|+..++.
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l--------~~------------~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL--------PL------------EQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS--------CT------------GGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC--------CH------------HHHHHHHcCCCHHHHHHHHH
Confidence            4567777788888887777632        10            11334456667777776665

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.44  E-value=0.78  Score=41.82  Aligned_cols=142  Identities=11%  Similarity=0.004  Sum_probs=97.1

Q ss_pred             hhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH-HhccCCHHHHHHHHHHHHHhhc-CCchhHHH
Q 009647          225 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR-HLKRADEELTTEVAWVVVYLSA-LSNVATSL  302 (530)
Q Consensus       225 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~-~~~~~~~~  302 (530)
                      ....+.+++..+++-.|+..|..+ .   +        ....++.+.. +...+.=.|+.-++.++..++. ..++    
T Consensus        75 la~~L~~~~~deVR~~Av~lLg~~-~---~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           75 LAFLAYQSDVYQVRMYAVFLFGYL-S---K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHT-T---T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHhCcchHHHHHHHHHHHhc-c---C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence            334455666678888888888777 2   1        2356777776 4445556788888888888874 2222    


Q ss_pred             HHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHH
Q 009647          303 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN  382 (530)
Q Consensus       303 i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsn  382 (530)
                          ..++.+...+ .+++..++..|+..+.--+......+.         ..-++|.|-.+..+++..||+...|.|..
T Consensus       139 ----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~d---------p~~ll~iL~~L~~D~s~yVrKSVan~LrD  204 (240)
T 3l9t_A          139 ----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKEN---------PNEAIRRIADLKEDVSEYVRKSVGNALRD  204 (240)
T ss_dssp             ----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTTC---------HHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhcC---------HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                1456667766 588888888777665432222111111         12478888888888899999999999999


Q ss_pred             HhcCCHHHHHHHHh
Q 009647          383 IAAGSVEHKQLIHS  396 (530)
Q Consensus       383 l~~~~~~~~~~li~  396 (530)
                      ++..+|+-+..+++
T Consensus       205 ~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          205 ISKKFPDLVKIELK  218 (240)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HhhhCHHHHHHHHH
Confidence            99999887776655

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.38  E-value=3.4  Score=39.66  Aligned_cols=236  Identities=13%  Similarity=0.137  Sum_probs=148.6

Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch----hHHHHHhc-CChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE----FRNVLLSQ-GALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~----~r~~~~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                      +.+..|+..|.. -+.+.+..++.+++++......    .-+.+... .++..|+.-..  ++++.-++.-.|.-.+++.
T Consensus        78 dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e  154 (341)
T 1upk_A           78 GLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE  154 (341)
T ss_dssp             SHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH
T ss_pred             CHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhH
Confidence            466777777766 5678888888888888764432    22333332 23333333333  4455556666666666542


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcC---chHHHHHHHhcCCCccchhhhH
Q 009647          253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG---VLQLLVERLATSNSLQLLIPVL  329 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g---~l~~Lv~lL~~~~~~~v~~~al  329 (530)
                         ....++...+.+-.+...+..++=++..+|..++..|...+.......+...   .....-.+| .+++--++..++
T Consensus       155 ---~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkRQSl  230 (341)
T 1upk_A          155 ---PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKRQSL  230 (341)
T ss_dssp             ---HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred             ---HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHHHHH
Confidence               2233444556666777888888889999999999988876555554444432   445566666 577777888999


Q ss_pred             HHHhhhhcCCccc--cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC---CHHHHHHHHhC--CcHHH
Q 009647          330 RSLGNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSS--EALAL  402 (530)
Q Consensus       330 ~~L~nl~~~~~~~--~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~---~~~~~~~li~~--~~l~~  402 (530)
                      ..||.+.......  -...+.     +..-+..++.+|.+....|+.+|..+.--.++.   +++....++..  .++..
T Consensus       231 KLLgelLldr~N~~vM~~Yis-----~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~f  305 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYIS-----KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF  305 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhC-----CHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHH
Confidence            9999999764432  223343     346899999999999999999999998887775   33334444433  34444


Q ss_pred             HHHHhcCC--ChhHHHHHHHHHHHh
Q 009647          403 LLHLLSTS--PFDIKKEVAYVLGNL  425 (530)
Q Consensus       403 Li~lL~~~--~~~v~~eA~~aL~nl  425 (530)
                      |-+...+.  |.....|=...+..|
T Consensus       306 l~~f~~d~~eDeqF~dEK~~lI~~I  330 (341)
T 1upk_A          306 LSKFQNDRTEDEQFNDEKTYLVKQI  330 (341)
T ss_dssp             HHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred             HHhCCCCCcchhhHHHHHHHHHHHH
Confidence            44444332  334444444444444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.21  E-value=5  Score=40.48  Aligned_cols=123  Identities=12%  Similarity=0.066  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 009647          191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI  270 (530)
Q Consensus       191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L  270 (530)
                      .+...+.-|+..+.....+.|+..+..     +..++.++.+.+..++.+|+..|..+|++.       .  ...+...|
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~~-------~--i~kiaDvL  105 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATGE-------N--LPRVADIL  105 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCTT-------C--HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhhh-------h--hhhHHHHH
Confidence            457778888888888887777766554     456788888889999999999999999761       2  34777889


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhh
Q 009647          271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV  336 (530)
Q Consensus       271 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~  336 (530)
                      +++|..+++.-...+-++|..|...++.        +.+..+...+. .+++.++..++..|..-+
T Consensus       106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          106 TQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQIL-QGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHH-HSCHHHHHHHHHHHHHHG
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHc-ccchHHHHHHHHHHHHHH
Confidence            9999999988888888888777763331        23344444443 245677777777775443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.97  E-value=3.5  Score=47.55  Aligned_cols=305  Identities=13%  Similarity=0.087  Sum_probs=163.0

Q ss_pred             HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcC--
Q 009647           94 EELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAG--  168 (530)
Q Consensus        94 ~~l~~~l~~l~s~--d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~-~~~~~~~~~eA~~~L~nia~~--  168 (530)
                      .++.+++....++  |.+.+.+|-..|..+ ...  |        ...+.+...|. ...++.+++-|+..|.|....  
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~-~~~--p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W   79 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEF-KEK--C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW   79 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHH--C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HhC--c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            4455555433344  777888888888776 221  1        13444445454 344566777788889887632  


Q ss_pred             ---ChhhHHhhcC-CcHHHHHhhcCC--CCHHHHHHHHHHHHhhcCCC-chhHHHHHhcCChhhhHhhcCCCChhHHHHH
Q 009647          169 ---KQEETKALLP-ALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTA  241 (530)
Q Consensus       169 ---~~~~~~~i~~-~v~~L~~lL~~~--~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a  241 (530)
                         +.+.+..+-. .+..+...-...  ....++.+.+.++..|+... +..     =.+.++.|+.++++ +....+.+
T Consensus        80 ~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~  153 (1204)
T 3a6p_A           80 NGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-GETQTELV  153 (1204)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-CHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-CHHHHHHH
Confidence               3333333332 333333321110  35789999999998887521 100     12456677777765 45667788


Q ss_pred             HHHHHHhhcC----CCCCchhh-----HHH--hhchHHHHHHHhcc-------------------CCHHHHHHHHHHHHH
Q 009647          242 AWALSNLIKG----PDPKPATE-----LIK--VDGLLDAILRHLKR-------------------ADEELTTEVAWVVVY  291 (530)
Q Consensus       242 ~~~L~nL~~~----~~~~~~~~-----~v~--~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~~  291 (530)
                      ..+|..|+..    ......+.     .+.  ...+++.+..++..                   ++..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            8888888742    11111110     111  01333444444432                   123466667777765


Q ss_pred             hhcCCchhHHHHHhcC--chHHHHHHHhcCCCccchhhhHHHHhhhhcCCc--cccchhcccCCCcchhhHHHHHHHhc-
Q 009647          292 LSALSNVATSLLVKSG--VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS--STISDVLVPGHGITDQVIAVLVKCLK-  366 (530)
Q Consensus       292 L~~~~~~~~~~i~~~g--~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~--~~~~~~i~~g~~~~~~~l~~L~~lL~-  366 (530)
                      ...--+  ...+.+..  .++.+..++   .+++++..|+.||..++....  .....++..   +....+..++..+. 
T Consensus       234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l---~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~---l~~~~l~~l~~~~~~  305 (1204)
T 3a6p_A          234 YIDWVS--MSHITAENCKLLEILCLLL---NEQELQLGAAECLLIAVSRKGKLEDRKPLMVL---FGDVAMHYILSAAQT  305 (1204)
T ss_dssp             TTTTSC--HHHHHTTTSHHHHHHHHGG---GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGG---GSHHHHHHHHHHHHT
T ss_pred             HHhccC--HHHHHhccchHHHHHHHHc---CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHH---HhhHHHHHHHHHhhc
Confidence            543222  23333432  556666544   357889999999999997542  111112210   01123444455432 


Q ss_pred             -------cCcHhHHHHHHHHHHHHhcCCHHHHHHHHh-----------CCcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          367 -------SEHRVLKKEAAWVLSNIAAGSVEHKQLIHS-----------SEALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       367 -------~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~-----------~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                             ..+..+.+..|..+..+..   . ...++.           .++++.++.++.+++..+-..++..-..+..
T Consensus       306 ~~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          306 ADGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence                   2245677788888887752   2 222221           1357777777788877777766644443443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.22  E-value=3.9  Score=47.21  Aligned_cols=292  Identities=16%  Similarity=0.120  Sum_probs=156.2

Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhc-CCCCHHHHHHHHHHHHhhcCC-----CchhHHHHHhcCChh
Q 009647          151 PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG-EKSSSPVAEQCAWALGNVAGE-----GEEFRNVLLSQGALP  224 (530)
Q Consensus       151 ~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~-~~~~~~v~~~a~~~L~nla~d-----~~~~r~~~~~~g~i~  224 (530)
                      ++..+.+|-..|..+....        ++.+.+...|. .+.++.+|..|+..|.|....     +++.|..+. ..++.
T Consensus        26 ~~~~r~~Ae~~L~~~~~~p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~   96 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEKC--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVME   96 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHH
T ss_pred             ChHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHH
Confidence            3445566777777664322        13344444443 346788999999999887632     233333333 22344


Q ss_pred             hhHhhcCC---CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC---C--
Q 009647          225 PLARMMLP---NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---S--  296 (530)
Q Consensus       225 ~L~~lL~~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~--  296 (530)
                      .+......   ....++..++-+++.++...-|..      =..+++.|+.++.. ++.....++.+|..|++.   .  
T Consensus        97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~------Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~  169 (1204)
T 3a6p_A           97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQH------WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT  169 (1204)
T ss_dssp             HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT------CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHHHHHhCccc------chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence            44433211   356778888888988886543322      13677888888865 556677788888888642   1  


Q ss_pred             --chhHH----HHHhc--CchHHHHHHHhcC------------------CCccchhhhHHHHhhhhcCCccccchhcccC
Q 009647          297 --NVATS----LLVKS--GVLQLLVERLATS------------------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPG  350 (530)
Q Consensus       297 --~~~~~----~i~~~--g~l~~Lv~lL~~~------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g  350 (530)
                        .....    .+.+.  .+++.+...|..+                  .+..+...++.++.+...--+.  ..+.+. 
T Consensus       170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~-  246 (1204)
T 3a6p_A          170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAE-  246 (1204)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTT-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhc-
Confidence              11111    11111  1223333333211                  1223556777777766543221  112210 


Q ss_pred             CCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--HHHHHHHHhC---CcHHHHHHHhc--------CCChhHHHH
Q 009647          351 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQLIHSS---EALALLLHLLS--------TSPFDIKKE  417 (530)
Q Consensus       351 ~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~--~~~~~~li~~---~~l~~Li~lL~--------~~~~~v~~e  417 (530)
                         ....++.+..++.  ++.++..|+-+|..|+...  ++....++..   ..+..++..+.        ..+.++.+.
T Consensus       247 ---~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          247 ---NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             ---TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             ---cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence               1136777776665  4678999999999998753  3332223321   11234444432        123566667


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-----------cCChHHHHhhhccCCHHHHHHHHHHHHHHHcc
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-----------RGCLSGFIDLVRSADIEAARLGLQFMELVLRG  480 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-----------~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~  480 (530)
                      -+..+..+..              +...++.           .++++.++.+...++..+...++++-..+++.
T Consensus       322 l~~ll~~lg~--------------~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN--------------QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH--------------HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH--------------HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777766641              1122211           13466666666666666666666655555543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.96  E-value=3.8  Score=37.70  Aligned_cols=137  Identities=18%  Similarity=0.189  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCC----ccchhhhHHHHhhhhcCCccc-cchhcccCCCcchhh
Q 009647          283 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQV  357 (530)
Q Consensus       283 ~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~~-~~~~i~~g~~~~~~~  357 (530)
                      .+|+..|..++. +++....++++.+.-.|..+|.....    +.++..++..+|.++..++.. +..++      +..+
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL------~tEi  146 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLL------TTEI  146 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHH------HTTH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHH------hhhH
Confidence            445555566676 67777888899988888988853221    345678999999999766544 34444      3579


Q ss_pred             HHHHHHHhccCcHhHHHHHHHHHHHHhcCC---------HHHHHHHHhCCcHHHHHHH-hcCCChhHHHHHHHHHHHhcC
Q 009647          358 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGS---------VEHKQLIHSSEALALLLHL-LSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       358 l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~---------~~~~~~li~~~~l~~Li~l-L~~~~~~v~~eA~~aL~nl~~  427 (530)
                      +|...+.+..++.--|.-|.+++..|...+         .+...++..  ++..++.. .+.+++.+-+..+++-..++.
T Consensus       147 iplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~--vL~~mV~~l~~~ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          147 IPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAM--ILGKMVLQLSKEPSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            999999999999988999999999886532         233333322  34444443 367788888999998888876


Q ss_pred             C
Q 009647          428 S  428 (530)
Q Consensus       428 ~  428 (530)
                      +
T Consensus       225 n  225 (268)
T 2fv2_A          225 N  225 (268)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.72  E-value=3.4  Score=37.99  Aligned_cols=135  Identities=12%  Similarity=0.131  Sum_probs=92.4

Q ss_pred             hhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCc-----HhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc
Q 009647          326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH-----RVLKKEAAWVLSNIAA-GSVEHKQLIHSSEA  399 (530)
Q Consensus       326 ~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~-----~~i~~~A~~~Lsnl~~-~~~~~~~~li~~~~  399 (530)
                      .+|+..+..++++++... .+++      ..+.-.|..+|+..+     +.+|-.+..+++.+.. .+++.+..+++.++
T Consensus        74 cnaLaLlQcvAshpetr~-~Fl~------a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEi  146 (268)
T 2fv2_A           74 CNALALLQCVASHPETRS-AFLA------AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEI  146 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHH-HHHH------TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHcCcchhh-HHHH------ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhH
Confidence            466777777787665443 3443      245555666665432     4789999999999885 46788888999999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh--------cCChHHHHh-hhccCCHHHHHHH
Q 009647          400 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG--------RGCLSGFID-LVRSADIEAARLG  470 (530)
Q Consensus       400 l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--------~g~i~~L~~-lL~~~d~~i~~~~  470 (530)
                      +|..++.++.++.-.|.-|.+.+..+..+.           .-+.++..        ..++..++. +.+.+++.+.+.+
T Consensus       147 iplCLrime~GselSKtvAtfIlqKIL~dd-----------~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhi  215 (268)
T 2fv2_A          147 IPLCLRIMESGSELSKTVATFILQKILLDD-----------TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHV  215 (268)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHSH-----------HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHhccc-----------hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            999999999999999999999988886531           22233322        123333333 3456778888877


Q ss_pred             HHHHHHHH
Q 009647          471 LQFMELVL  478 (530)
Q Consensus       471 L~~L~~il  478 (530)
                      +++-..+.
T Consensus       216 ircYlRLs  223 (268)
T 2fv2_A          216 VRCYLRLS  223 (268)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77666664

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.36  E-value=3.3  Score=41.83  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=92.2

Q ss_pred             CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 009647          319 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSE  398 (530)
Q Consensus       319 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~  398 (530)
                      .++.....-|...|......-++..           ..++..++.|..+.+..||+.|+..|..+|.+  +.+..     
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~-----------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----  100 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELA-----------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----  100 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----
Confidence            3456677778888888876655432           35788899999999999999999999999886  44444     


Q ss_pred             cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 009647          399 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL  478 (530)
Q Consensus       399 ~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il  478 (530)
                      +...|+++|+..++.-...+-++|..+....                  -.+.+..|+.-+..+|+.+...++.+|..-+
T Consensus       101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D------------------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          101 VADILTQLLQTDDSAEFNLVNNALLSIFKMD------------------AKGTLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHhcC------------------hHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            4558899999888765555555555553211                  1245566666666678888889999887766


Q ss_pred             ccCCC
Q 009647          479 RGMPN  483 (530)
Q Consensus       479 ~~~~~  483 (530)
                      ...+.
T Consensus       163 ~~l~~  167 (507)
T 3u0r_A          163 KTLPD  167 (507)
T ss_dssp             GGSCT
T ss_pred             hhcch
Confidence            55443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.14  E-value=3  Score=39.87  Aligned_cols=180  Identities=14%  Similarity=0.030  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcC------CcHH
Q 009647          109 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP------ALPL  182 (530)
Q Consensus       109 ~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~------~v~~  182 (530)
                      +..+.++..+...+.....+..    ....+..+..+++.+.  +.++-+.-.+.-.+. ++.....+.+      .+..
T Consensus        79 ~~el~~L~~l~~~l~~~s~~~~----~~~~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~  151 (304)
T 3ebb_A           79 EDDLILLEKILSLICNSSSEKP----TVQQLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSH  151 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCC----CHHHHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcc----chHHHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHH
Confidence            4456666666665543211111    1113345555555433  223444444444443 2222222211      2233


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhc--CChhhhHhhcCCCChhHHHHHHHHHHHhhcC--CCCCchh
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMMLPNKGSTVRTAAWALSNLIKG--PDPKPAT  258 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~~~~  258 (530)
                      ++..+.+...+..+--++.+++|+.. ++..|+.++..  .+++.+...+.+++..++..++..+.|++-.  +.+.  .
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~--~  228 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN--I  228 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC--H
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC--c
Confidence            44555443456678899999999997 56788877753  2444455555566888999999999998753  1111  1


Q ss_pred             hHHHhhchHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCchhH
Q 009647          259 ELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVAT  300 (530)
Q Consensus       259 ~~v~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~  300 (530)
                      +.  ...++..+..++. ..|.|....++-+|++|...+.+..
T Consensus       229 ~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~  269 (304)
T 3ebb_A          229 EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAV  269 (304)
T ss_dssp             HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHH
Confidence            21  2235555555554 4588999999999999997654433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.79  E-value=9.3  Score=37.75  Aligned_cols=171  Identities=16%  Similarity=0.120  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC----------CCChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647          108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----------GSPDEQLLEAAWCLTNIAAGKQEETKALL  177 (530)
Q Consensus       108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----------~~~~~~~~eA~~~L~nia~~~~~~~~~i~  177 (530)
                      ....+..+..|+..|...+...++.++ .+++..|+.+|..          ......+.+++.||..+.... .....++
T Consensus        81 ~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~-~G~~~vl  158 (383)
T 3eg5_B           81 DMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTML  158 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH-HHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch-hhHHHHH
Confidence            444567788898888877666667777 6778888888851          112356678999999887543 3555666


Q ss_pred             ---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hh-HHHHH----------hcCChhhhHhhcCCC-ChhHHHHH
Q 009647          178 ---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLPN-KGSTVRTA  241 (530)
Q Consensus       178 ---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~lL~~~-~~~~~~~a  241 (530)
                         ..+..+...|.+ +++.++..++-.|+-+|..+. +. ...++          +..-..+++..+.+. +.+...++
T Consensus       159 ~~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~  237 (383)
T 3eg5_B          159 ETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC  237 (383)
T ss_dssp             TCSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred             cChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHH
Confidence               478888888876 789999999999999886442 22 22222          334567788888763 55555555


Q ss_pred             HHHHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCCHHHH
Q 009647          242 AWALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEELT  282 (530)
Q Consensus       242 ~~~L~nL~~~~~~~~~~-----~~v~~~~~l~~L~~lL~~~d~~v~  282 (530)
                      ...+-.+..+. +....     .-+...|+.+.+-++=..+++++.
T Consensus       238 m~lIN~li~~~-~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          238 LQLINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDMK  282 (383)
T ss_dssp             HHHHHHHHTTC-CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred             HHHHHHHHcCC-CCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence            44444455443 22211     111234555555553334455443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.47  E-value=10  Score=34.55  Aligned_cols=141  Identities=17%  Similarity=0.132  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647          108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL  177 (530)
Q Consensus       108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~i~  177 (530)
                      .+...+-+..|+..|...+-..++.+ ..+++..|+.+|..    ..      ....+.++..||..+.... .....++
T Consensus        15 ~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-~G~~~vl   92 (233)
T 2f31_A           15 DMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTML   92 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSH-HHHHHHH
T ss_pred             hHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCCh-HHHHHHH
Confidence            33345567777777776655556666 56788888888752    11      2355678999999887543 3455555


Q ss_pred             ---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc-hh-HHHHH----------hcCChhhhHhhcCC-CChhHHHHH
Q 009647          178 ---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTA  241 (530)
Q Consensus       178 ---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~lL~~-~~~~~~~~a  241 (530)
                         +.+..+...|.+ +++.++..++-.|+-+|.-+. .. -..++          +..-..+++..+.+ .+.+...++
T Consensus        93 ~~~~~i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~  171 (233)
T 2f31_A           93 ETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC  171 (233)
T ss_dssp             TSSSHHHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred             cCcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHH
Confidence               378888888876 789999999998888886432 12 22222          22345567777764 345555555


Q ss_pred             HHHHHHhhcC
Q 009647          242 AWALSNLIKG  251 (530)
Q Consensus       242 ~~~L~nL~~~  251 (530)
                      .-.+-.+..+
T Consensus       172 m~lIN~li~~  181 (233)
T 2f31_A          172 LQLINALITP  181 (233)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHCC
Confidence            5555455544

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=89.03  E-value=14  Score=34.16  Aligned_cols=195  Identities=10%  Similarity=0.025  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh
Q 009647           92 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        92 ~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~  171 (530)
                      +-+.++++++..+....+.++..+...++++-.. +|..   . ..+++.++.+-.. .+.++++-.+..|...+....+
T Consensus        13 ~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k~~   86 (257)
T 3gs3_A           13 ARAKVVDWCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVKVE   86 (257)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHH
Confidence            4577778887555533479999999999986654 3321   1 3466777776544 4567777788888888744332


Q ss_pred             hHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcC---------------ChhhhHhhcCCCChh
Q 009647          172 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG---------------ALPPLARMMLPNKGS  236 (530)
Q Consensus       172 ~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g---------------~i~~L~~lL~~~~~~  236 (530)
                         .+...++.|..+|.+ .++.|...++-+.+++-.   ..=+.+...+               .=..+++++.+.+..
T Consensus        87 ---l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~---~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~g  159 (257)
T 3gs3_A           87 ---LLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYK---NGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDG  159 (257)
T ss_dssp             ---GHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH---HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHH
T ss_pred             ---HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcc
Confidence               222578888888886 789999998887776632   1111111221               122355556677888


Q ss_pred             HHHHHHHHHHHhh--cCCC-CC-------chhhHH--------------HhhchHHHHHHHhccC--CHHHHHHHHHHHH
Q 009647          237 TVRTAAWALSNLI--KGPD-PK-------PATELI--------------KVDGLLDAILRHLKRA--DEELTTEVAWVVV  290 (530)
Q Consensus       237 ~~~~a~~~L~nL~--~~~~-~~-------~~~~~v--------------~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~  290 (530)
                      ++-.+...+-.+.  .... +.       .....|              ...+.+..|+..+.++  +......++.+|+
T Consensus       160 vkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~  239 (257)
T 3gs3_A          160 IRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLC  239 (257)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            8888887776533  2110 00       000000              1234556666665544  3345667777777


Q ss_pred             HhhcCCchh
Q 009647          291 YLSALSNVA  299 (530)
Q Consensus       291 ~L~~~~~~~  299 (530)
                      .|+...+..
T Consensus       240 ~Iak~RP~~  248 (257)
T 3gs3_A          240 TIAKMRPIF  248 (257)
T ss_dssp             HHHHHCGGG
T ss_pred             HHHHhCcHH
Confidence            777655544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=89.03  E-value=0.57  Score=43.40  Aligned_cols=20  Identities=20%  Similarity=0.117  Sum_probs=12.0

Q ss_pred             hhHhhcCCCChhHHHHHHHH
Q 009647          225 PLARMMLPNKGSTVRTAAWA  244 (530)
Q Consensus       225 ~L~~lL~~~~~~~~~~a~~~  244 (530)
                      .+..++++++..++..++..
T Consensus       150 ~l~~l~~D~d~~VR~~aa~~  169 (244)
T 1lrv_A          150 RLFRFMRDEDRQVRKLVAKR  169 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHc
Confidence            44455566666776666554

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=88.82  E-value=0.46  Score=39.65  Aligned_cols=77  Identities=12%  Similarity=0.188  Sum_probs=53.9

Q ss_pred             CChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchh-HHHHhchHHHHHHHhcCC--------cHHHHHHHHHHHHh
Q 009647          450 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTK-LVEREDGIDAMERFQFHE--------NEDLRNMANGLVDK  520 (530)
Q Consensus       450 g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~-~i~~~ggl~~L~~L~~~~--------~~~i~~~A~~il~~  520 (530)
                      .+++.|..-|..+++.++.++|.+|..++..+.. .+.. +-.....+..+.+.+..+        +..|++.|.++++-
T Consensus        49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~-~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l  127 (140)
T 1vdy_A           49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS-EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA  127 (140)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH-HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence            3567788888889999999999999999876542 1222 222334444444444332        36899999999999


Q ss_pred             hcCCCCC
Q 009647          521 YFGEDYG  527 (530)
Q Consensus       521 ~f~~~~~  527 (530)
                      .|+++..
T Consensus       128 l~d~~~~  134 (140)
T 1vdy_A          128 IFSEENG  134 (140)
T ss_dssp             HTCCSSC
T ss_pred             HhCcCCC
Confidence            9998764

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=88.42  E-value=11  Score=36.01  Aligned_cols=98  Identities=14%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-----HHHHHHHH
Q 009647          321 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-----VEHKQLIH  395 (530)
Q Consensus       321 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-----~~~~~~li  395 (530)
                      .+..+.-++|+++|+........ .++..    ...+++.+...+.+.+..++..++.++-|++...     .+....  
T Consensus       161 ~p~n~ml~lR~l~NlF~~~~g~~-~l~~~----~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--  233 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFVGQAGQK-LMMSQ----RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--  233 (304)
T ss_dssp             CHHHHHHHHHHHHHGGGSHHHHH-HHHHT----HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--
T ss_pred             ChHHHHHHHHHHHHccCCchhHH-HHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--
Confidence            34456789999999997764322 22211    1346667777777778899999999999998631     111111  


Q ss_pred             hCCcHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 009647          396 SSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       396 ~~~~l~~Li~lL~-~~~~~v~~eA~~aL~nl~~~  428 (530)
                         ++..+..+++ ..+.+....++-||++++..
T Consensus       234 ---ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          234 ---CLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             ---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence               3444555553 45788999999999999974

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=88.42  E-value=2.6  Score=47.83  Aligned_cols=170  Identities=18%  Similarity=0.165  Sum_probs=95.0

Q ss_pred             HHHHHHHhcCC---CChHHHHHHHHHHHHHh----cCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC
Q 009647          139 IPVLVQCLAFG---SPDEQLLEAAWCLTNIA----AGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG  210 (530)
Q Consensus       139 v~~Lv~lL~~~---~~~~~~~eA~~~L~nia----~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~  210 (530)
                      +..+..++..+   +.+.+...|..+++.+.    ..++.....++ .....|.+.+.. .+.+-+..++.+|||+..  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--  469 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--  469 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--
Confidence            34555666542   22334333555555554    22221111212 233444445555 467778889999999875  


Q ss_pred             chhHHHHHhcCChhhhHhhcCC-------CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--cCCHHH
Q 009647          211 EEFRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--RADEEL  281 (530)
Q Consensus       211 ~~~r~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~--~~d~~v  281 (530)
                      +         ..++.|.+++..       ....++..|+|+|..+.... |         ..+-+.++++..  ..++++
T Consensus       470 p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p---------~~v~~il~~i~~n~~e~~Ev  530 (1056)
T 1lsh_A          470 P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-P---------RKVQEIVLPIFLNVAIKSEL  530 (1056)
T ss_dssp             G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-H---------HHHHHHHHHHHHCTTSCHHH
T ss_pred             h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-h---------HHHHHHHHHHhcCCCCChHH
Confidence            2         246677777642       23578889999999997431 1         123456677774  567899


Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCc
Q 009647          282 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS  340 (530)
Q Consensus       282 ~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~  340 (530)
                      +..|+..|..-.  ++.        ..+..+...+...++.+|..-....|.+++..+.
T Consensus       531 RiaA~~~Lm~t~--P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~  579 (1056)
T 1lsh_A          531 RIRSCIVFFESK--PSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  579 (1056)
T ss_dssp             HHHHHHHHHHTC--CCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHC--cCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence            999988885432  221        1234444455433455555555555555554443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=85.92  E-value=20  Score=35.24  Aligned_cols=129  Identities=17%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647          323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  402 (530)
Q Consensus       323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~  402 (530)
                      ..+...|+-+..++...+..   ++       .++++.++.+-.+.+..+|+..+..|...+....+...     .+++.
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps---Ll-------~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~  104 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT---LL-------DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIAN  104 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG---GG-------GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHH---HH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            34566676677765443321   33       36899999998888889999999888877754433322     25678


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc---------------CChHHHHhhhccCCHHHH
Q 009647          403 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR---------------GCLSGFIDLVRSADIEAA  467 (530)
Q Consensus       403 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~---------------g~i~~L~~lL~~~d~~i~  467 (530)
                      |..+|.+.++.|.+.++.+.+++-.             ...++++..               .+-..+++++.+.+..+.
T Consensus       105 L~~LL~d~d~~V~K~~I~~~tslYp-------------l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVr  171 (386)
T 3o2t_A          105 LNMLLRDENVNVVKKAILTMTQLYK-------------VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR  171 (386)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHH-------------HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchH
Confidence            8888888889999998888877731             112222222               123356667778888999


Q ss_pred             HHHHHHHHHHHc
Q 009647          468 RLGLQFMELVLR  479 (530)
Q Consensus       468 ~~~L~~L~~il~  479 (530)
                      ..++.+++.+..
T Consensus       172 l~aiKFle~VIl  183 (386)
T 3o2t_A          172 THAIKFVEGLIV  183 (386)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998763

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=83.54  E-value=13  Score=35.24  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhC--CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-
Q 009647          372 LKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-  448 (530)
Q Consensus       372 i~~~A~~~Lsnl~~~~~~~~~~li~~--~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-  448 (530)
                      --..|+-.|--++ +....=-.|+++  .++..|+ +....++.+++.|+.+|+...++      +|.    .+..+.+ 
T Consensus        44 ~le~aLD~L~ElS-HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN------NP~----Al~~V~~~  111 (315)
T 3qml_C           44 RLEDSFDRIMEFA-HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN------NPP----VVEFINES  111 (315)
T ss_dssp             HHHHHHHHHGGGT-TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT------CHH----HHHHHHHH
T ss_pred             HHHHHHHHHHHhh-hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc------CHH----HHHHHHHh
Confidence            3445555555553 343443444432  2333343 22445667899999999988875      343    3343333 


Q ss_pred             -cCChHHHHhhhcc-------CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCC--cHHHHHHHHHHH
Q 009647          449 -RGCLSGFIDLVRS-------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLV  518 (530)
Q Consensus       449 -~g~i~~L~~lL~~-------~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~--~~~i~~~A~~il  518 (530)
                       -.++..+|.-|..       ...-++...|.+|..++.....  +     ...|++.|.++..-.  ++.++.++..|+
T Consensus       112 ~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~--F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li  184 (315)
T 3qml_C          112 FPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED--L-----PIYSTVVLQNVYERNNKDKQLQIKVLELI  184 (315)
T ss_dssp             CTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT--C-------CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh--h-----hhccHHHHHHHHccCCCCHHHHHHHHHHH
Confidence             4566666655443       2334555566666666543211  1     133555555554444  899999999999


Q ss_pred             HhhcC
Q 009647          519 DKYFG  523 (530)
Q Consensus       519 ~~~f~  523 (530)
                      ..+|.
T Consensus       185 ~d~f~  189 (315)
T 3qml_C          185 SKILK  189 (315)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            99994

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=82.53  E-value=39  Score=33.18  Aligned_cols=192  Identities=11%  Similarity=0.081  Sum_probs=113.2

Q ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           94 EELKSAVAYHG-KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        94 ~~l~~~l~~l~-s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      +.++++++... .++ +.++..+..+++++-+. +|.   . =.+.+|.++++-...+ .++++-.+..|...+....+ 
T Consensus        25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~-dps---L-l~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~e-   96 (386)
T 3o2t_A           25 ERVVDLLNQAALITN-DSKITVLKQVQELIINK-DPT---L-LDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIE-   96 (386)
T ss_dssp             HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTT-CGG---G-GGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGG-
T ss_pred             HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhcc-CHH---H-HHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHH-
Confidence            45555555221 233 47999999999985543 342   1 2678888888877554 67777677777777753332 


Q ss_pred             HHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCC---------------hhhhHhhcCCCChhH
Q 009647          173 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA---------------LPPLARMMLPNKGST  237 (530)
Q Consensus       173 ~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~---------------i~~L~~lL~~~~~~~  237 (530)
                        .+..+++.|..+|.+ .++.|...++-+.+++-.   ..-..+...+.               -..++.++.+.+..+
T Consensus        97 --l~~~~l~~L~~LL~d-~d~~V~K~~I~~~tslYp---l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GV  170 (386)
T 3o2t_A           97 --LLLKLIANLNMLLRD-ENVNVVKKAILTMTQLYK---VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGI  170 (386)
T ss_dssp             --GHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH---HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHH
T ss_pred             --HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcch
Confidence              233577888888876 788999998888887641   11122222222               223455566677888


Q ss_pred             HHHHHHHHHHhh--cCC---CCC--------chhhHH--------------HhhchHHHHHHHhccC--CHHHHHHHHHH
Q 009647          238 VRTAAWALSNLI--KGP---DPK--------PATELI--------------KVDGLLDAILRHLKRA--DEELTTEVAWV  288 (530)
Q Consensus       238 ~~~a~~~L~nL~--~~~---~~~--------~~~~~v--------------~~~~~l~~L~~lL~~~--d~~v~~~a~~~  288 (530)
                      +-.|+.++-.+.  ...   ++.        ...+.|              ...+.+..|+..+..+  ++.....++.+
T Consensus       171 rl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lns  250 (386)
T 3o2t_A          171 RTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGS  250 (386)
T ss_dssp             HHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHH
Confidence            888877766533  211   111        000000              1234566677777643  34455667777


Q ss_pred             HHHhhcCCchh
Q 009647          289 VVYLSALSNVA  299 (530)
Q Consensus       289 L~~L~~~~~~~  299 (530)
                      |+.|+...+..
T Consensus       251 La~Iak~RP~~  261 (386)
T 3o2t_A          251 LANIARQRPMF  261 (386)
T ss_dssp             HHHHHHHSGGG
T ss_pred             HHHHHHhcHHH
Confidence            88887755544

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=80.46  E-value=19  Score=33.28  Aligned_cols=135  Identities=12%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647          323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  402 (530)
Q Consensus       323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~  402 (530)
                      ..+...|+-+..++-..+..   ++       ..+++.++.+..+.+..+|+..+..+...+...++...     ..++.
T Consensus        30 ~~kl~~L~qa~el~~~~dp~---ll-------~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~   94 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAE---LA-------EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINV   94 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGG---GH-------HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHh---HH-------HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            34556666666655443321   22       36888888877777789999999888887744433322     25778


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhc--------CCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHH
Q 009647          403 LLHLLSTSPFDIKKEVAYVLGNLC--------VSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM  474 (530)
Q Consensus       403 Li~lL~~~~~~v~~eA~~aL~nl~--------~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L  474 (530)
                      |..++.+.++.|.|.|+.+.+++-        .++    +.+....+....|.  .+=..+++++.+.+..+...++.++
T Consensus        95 L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~----~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~  168 (257)
T 3gs3_A           95 VSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM----EPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFL  168 (257)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS----SCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC----CCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHH
Confidence            888889889999999988877762        221    11100001111121  2234566777888899999999999


Q ss_pred             HHHH
Q 009647          475 ELVL  478 (530)
Q Consensus       475 ~~il  478 (530)
                      +.+.
T Consensus       169 e~vI  172 (257)
T 3gs3_A          169 EGVV  172 (257)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-59
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-44
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-04
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  203 bits (515), Expect = 2e-59
 Identities = 140/500 (28%), Positives = 233/500 (46%), Gaps = 31/500 (6%)

Query: 36  QRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 95
           +RR    V + K +R+  +  +R        DG  S + D            Q    + +
Sbjct: 23  RRRDTQQVELRKAKRDEALAKRR--NFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 80

Query: 96  LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQL 155
           +   +       MQ++++A  + R++LSR   PPI+  ++AG +P LV+ +    P+   
Sbjct: 81  MTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 156 LEAAWCLTNIAAGKQEETKALLPA-LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 214
           LEAAW LTNIA+G   +TK ++ A    L   L    S  V EQ  WALGNVAG+  ++R
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197

Query: 215 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 274
           + +L   A+ P+  +   NK S +RTA W LSNL +G  P+P  +   V   L  + + +
Sbjct: 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP--DWSVVSQALPTLAKLI 255

Query: 275 KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 334
              D E   +  W + YLS     A   ++   + + LVE   +  S  +  P LR++GN
Sbjct: 256 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSHESTLVQTPALRAVGN 314

Query: 335 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI 394
           +V G+      V+  G       +  L   L S    +KKEA W +SNI AG+ E  Q +
Sbjct: 315 IVTGNDLQTQVVINAGV------LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV 368

Query: 395 HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 454
             +  +  L+ LL  + +  KKE  + + N      +         + +  LV +GC+  
Sbjct: 369 IDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-------RPDIIRYLVSQGCIKP 421

Query: 455 FIDLVRSADIEAARLGLQFMELVLR---------GMPNHEGTKLVEREDGIDAMERFQFH 505
             DL+  AD     + L  +E +L+         G+  +E    +E+  G++ +   Q +
Sbjct: 422 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 481

Query: 506 ENEDLRNMANGLVDKYFGED 525
           EN+ +   A  +++ YFGE+
Sbjct: 482 ENDKIYEKAYKIIETYFGEE 501

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  160 bits (405), Expect = 2e-44
 Identities = 132/453 (29%), Positives = 221/453 (48%), Gaps = 37/453 (8%)

Query: 81  EQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIP 140
            Q  +       V+ + S         ++ ++ A +  R+LLSR + PPI+  ++AG IP
Sbjct: 7   NQGTVNWSVEDIVKGINS-------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59

Query: 141 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVAEQ 198
             V  L          E+AW LTNIA+G  E+TKA++   A+P  I+ L    +  ++EQ
Sbjct: 60  KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQ 118

Query: 199 CAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGST-----VRTAAWALSNLIKGPD 253
             WALGN+AG+G  FR++++  GA+ PL  ++     ST     +R   W LSNL +  +
Sbjct: 119 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178

Query: 254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 313
           P P   L  V+ +L  ++R L   D E+  +  W + YL+   N    ++VK GV+  LV
Sbjct: 179 PAP--PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236

Query: 314 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 373
           +    +  L ++ P LR++GN+V G       V+  G       +AV    L +    ++
Sbjct: 237 KL-LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA------LAVFPSLLTNPKTNIQ 289

Query: 374 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGE 433
           KEA W +SNI AG  +  Q + +   +  L+ +LS + F  +KE A+ + N     T   
Sbjct: 290 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-- 347

Query: 434 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGT----KL 489
                  E +V LV  G +   ++L+ + D +  ++ L  +  + +       T     +
Sbjct: 348 -------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 400

Query: 490 VEREDGIDAMERFQFHENEDLRNMANGLVDKYF 522
           +E   G+D +E  Q HENE +   +  L++KYF
Sbjct: 401 IEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 1e-18
 Identities = 47/350 (13%), Positives = 103/350 (29%), Gaps = 28/350 (8%)

Query: 139 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLGEKSSSPVA 196
           IP  VQ L+      Q    A+ + +     +   + +     +  L+  L    +  V 
Sbjct: 4   IPKAVQYLSSQDEKYQA-IGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQ 61

Query: 197 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVR-TAAWALSNLIKGPDPK 255
           +  A AL N+       +     Q  +     ++     + ++      L NL    + K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 256 PATELIKVDGLLDAILRH------------LKRADEELTTEVAWVVVYLSALSNVATSLL 303
                  +  L D ++               +  D E+       +  LS+      ++ 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 304 VKSGVLQLLVERLATSNSLQLLIPV-----LRSLGNLVAGDSSTISDVL--VPGHGITDQ 356
             SG++  L+  +    +            +  L NL     + +      +  +     
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416
                  C  ++   +              + +    ++ S+A+   L+L+  S  D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 417 EVAYVLGNLCVSPTEGEGKP----KLIQEHLVSLVGRGCLSGFIDLVRSA 462
           E          +              ++E  +  + R   SG  D+VRS 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 50/344 (14%), Positives = 103/344 (29%), Gaps = 13/344 (3%)

Query: 1   MGLSNDMSFNNGKRKMKIIMKMCSVIWFLVGNVAAQRRRQNAVTVGKERRESLVRAKRLC 60
            GL  ++S  +  ++  I   +  +   ++   +      + ++      E    A    
Sbjct: 108 TGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167

Query: 61  RVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRR 120
           R  +SAD    +  +     +  +  +Q   A          +    M    N    L  
Sbjct: 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVEN---CMCVLHNLSYRLDA 224

Query: 121 LLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-- 178
            +          A  A        C +    D+ +     C         + +  L    
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFS-NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF-----RNVLLSQGALPPLARMMLPN 233
           A+   +  +G+       E CA AL N+            + + L +  LP +AR++   
Sbjct: 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343

Query: 234 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR--HLKRADEELTTEVAWVVVY 291
               VR+ A  LSN+ + P             +   +          E++ +   + V  
Sbjct: 344 NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403

Query: 292 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 335
           L A           S +L  ++    +S S +        L ++
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 128 PPIETALKAGAIPVLVQCLAFG-----SPDEQLLEAAWCLTNIAAGKQEETKALLP--AL 180
           P +   +     P + + L        + ++ L  A + + N+ A + +  K       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 181 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 217
             +I      +S   AE     L ++    +E + VL
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSS-KELQGVL 457

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 10/221 (4%)

Query: 208 GEGEEFRNVLLS-QGALPPLARMMLPNKGSTVR-TAAWALSNLIKGPDPKPATELIKVDG 265
           GE E+ ++ L      +PP A           R  A   L++L +  D   A +  ++ G
Sbjct: 2   GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN--AADFCQLSG 59

Query: 266 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 325
           +   + R+L+     L    A ++   S         ++  G L+ L+  L       + 
Sbjct: 60  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119

Query: 326 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 385
           +  L ++  LV    + +         +     +VL++ ++ + + LK ++A++L N+  
Sbjct: 120 VKALFAISCLVREQEAGLL------QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 173

Query: 386 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 426
           G  EHK  + S   +  L+ L+ T      + V   L +L 
Sbjct: 174 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 214

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 17/234 (7%)

Query: 109 QKRVNALRELRRLLSRFEFPPIETA---LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNI 165
           Q+R  AL  L  L        ++ A    +   + +LV              AA  +   
Sbjct: 32  QEREGALELLADLCE-----NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC 86

Query: 166 AAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGAL 223
           +       + +L   AL  L+  L   +   V  +  +A+  +  E E      L     
Sbjct: 87  SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 146

Query: 224 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTT 283
             L R M          +A+ L NL+ G         +   G++  ++  ++        
Sbjct: 147 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHP--EHKGTLCSMGMVQQLVALVRTEHSPFHE 204

Query: 284 EVAWVVVYLS-----ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 332
            V   +  L       +       L    +L+   + L      Q  +     L
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 258

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 6/197 (3%)

Query: 131 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--ALPLLIAHLG 188
           +  L   AIP L + L          +AA  +  ++  +      +     +  ++  + 
Sbjct: 11  DAELATRAIPELTKLLNDEDQVVV-NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69

Query: 189 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 248
             +    A   A  L N++    E    +   G +P L +M+     S +  A   L NL
Sbjct: 70  NTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128

Query: 249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 308
           +   +       +   G L  ++  L + + +        +  L+  +  +  +++ SG 
Sbjct: 129 LLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 309 LQLLVERLATSNSLQLL 325
            Q LV  + T    +LL
Sbjct: 187 PQALVNIMRTYTYEKLL 203

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 24/158 (15%)

Query: 136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPV 195
            GAIP LVQ L     D Q    +   T                       +       +
Sbjct: 396 QGAIPRLVQLLVRAHQDTQR-RTSMGGTQQQF-------------------VEGVRMEEI 435

Query: 196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK 255
            E C  AL  +A +    R V+     +P   +++     +  R AA  L  L +  +  
Sbjct: 436 VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 293
              E I+ +G    +   L   +E + T  A V+  +S
Sbjct: 495 ---EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 14/159 (8%)

Query: 356 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFDI 414
           + I  L K L  E +V+  +AA ++  ++        ++ S + ++ ++  +  +   + 
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 415 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM 474
            +  A  L NL               E L+++   G +   + ++ S         +   
Sbjct: 77  ARCTAGTLHNLSHHR-----------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAI--T 123

Query: 475 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNM 513
            L    +        V    G+  M       N     +
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 9e-07
 Identities = 65/482 (13%), Positives = 141/482 (29%), Gaps = 65/482 (13%)

Query: 87  MQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL 146
           M++   V  +   +         +       L  L    E   +    K+G IP LV+ L
Sbjct: 55  MRSPQMVSAIVRTMQNTNDVETAR--CTAGTLHNLSHHRE--GLLAIFKSGGIPALVKML 110

Query: 147 AFGSPDEQLLEAAWCL--TNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALG 204
                      A   L    +     +    L   L  ++A L  K++          L 
Sbjct: 111 GSPVDSVL-FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQ 168

Query: 205 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA------- 257
            +A   +E + ++L+ G    L  +M       +      +  ++               
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 258 ------------------------------TELIKVDGLLDAILRHLKRADEELTTEVAW 287
                                         T+   ++GLL  +++ L   D  + T  A 
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVL 347
           ++  L+  +     ++ + G ++ LV  +  +   +       ++  L    S      +
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE--DITEPAICALRHLTSRHQEAEM 346

Query: 348 VPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL 407
                     + V+VK L         +A   L    A    +   +    A+  L+ LL
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 408 STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI-------------QEHLVSLVGRGCLSG 454
             +  D ++  +           EG    +++               + + + G   +  
Sbjct: 407 VRAHQDTQRRTSMGGTQQQF--VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464

Query: 455 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 514
           F+ L+ S      R+    +  + +   + E  + +E E     +       NE +   A
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521

Query: 515 NG 516
             
Sbjct: 522 AA 523

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 20/249 (8%)

Query: 195 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLI-KG 251
           V    A  L N+     + + ++   G +  L R +L   ++      A  AL +L  + 
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341

Query: 252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQL 311
            + + A   +++   L  +++ L         +    ++   AL     + L + G +  
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401

Query: 312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGI---------------TDQ 356
           LV+ L  ++                  +   + +++    G                   
Sbjct: 402 LVQLLVRAHQ-DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 460

Query: 357 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 416
            I + V+ L S    +++ AA VL  +A    E  + I +  A A L  LL +    +  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 417 EVAYVLGNL 425
             A VL  +
Sbjct: 520 YAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-05
 Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 18/323 (5%)

Query: 92  AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP 151
           A+ EL   +    +  + K    + +L    S+ E            +  +V+ +   + 
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQL----SKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 152 DEQLLEAAWCLTNIAAGKQE-ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 210
            E     A  L N++  ++          +P L+  LG    S V       L N+    
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS-VLFYAITTLHNLLLHQ 132

Query: 211 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 270
           E  +  +   G L  +  ++       +      L  L  G        +I   G   A+
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK--LIILASGGPQAL 190

Query: 271 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 330
           +  ++    E        V+ + ++ +     +V++G +Q              L    +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ---------ALGLHLTDPSQ 241

Query: 331 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 390
            L          +SD         + ++  LV+ L S+   +   AA +LSN+   + ++
Sbjct: 242 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 391 KQLIHSSEALALLLHLLSTSPFD 413
           K ++     +  L+  +  +   
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDR 323

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 32/206 (15%)

Query: 179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 238
            LP+++  L   S  P+ +     + N+A         L  QGA+P L ++++     T 
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 239 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 298
           R  +   +        +                        E   E     +++ A    
Sbjct: 415 RRTSMGGTQQQFVEGVRM-----------------------EEIVEGCTGALHILARDVH 451

Query: 299 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVI 358
              ++     + L V+ L  S    +       L  L     +  ++ +       +   
Sbjct: 452 NRIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQDKEA--AEAIE-----AEGAT 503

Query: 359 AVLVKCLKSEHRVLKKEAAWVLSNIA 384
           A L + L S +  +   AA VL  ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRMS 529

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 139 IPVLVQCLAFGSPDEQLLEAA-WCLTNIAAGKQEET-KALLP-ALPLLIAHLGEKSSSPV 195
           +P + + +   +PD +  +AA      I  G +    K L+  A+P LI  + +  S  V
Sbjct: 367 LPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVV 423

Query: 196 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 231
            +  AW +G +    E      ++   L PL + ++
Sbjct: 424 RDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLI 456

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.65
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.6
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.56
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.47
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.34
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.25
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.25
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.18
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.01
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.0
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.83
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.79
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.79
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.74
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.46
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.42
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.39
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.38
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.72
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.25
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.95
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.56
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.26
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.05
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.45
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.83
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.09

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-63  Score=522.50  Aligned_cols=481  Identities=30%  Similarity=0.480  Sum_probs=399.6

Q ss_pred             HHh-hh-cCchHhhhhH-HHHHHHHhHhhHHHHHHhhhhcCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHHHHHHHH
Q 009647           25 VIW-FL-VGNVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEELKSAVA  101 (530)
Q Consensus        25 ~~~-~~-~~~~~~~rr~-~~~~~lrk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  101 (530)
                      .|| |+ .|+++.|||| ++.++|||+|||+.|.+||+..  ...+...++.................   .+.+..+++
T Consensus         9 ~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~   83 (503)
T d1wa5b_           9 NFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFI--PPTDGADSDEEDESSVSADQQFYSQL---QQELPQMTQ   83 (503)
T ss_dssp             -----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC---------------------------------CCHHHHHH
T ss_pred             HhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCC--cccccccccchhccccchhhHHHHHH---HHHHHHHHH
Confidence            678 55 3887665555 7999999999999998888521  11111111110000000001111111   233444555


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CC
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA  179 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~  179 (530)
                      .++++|.+.++.|+..+|++++...+++++.++++|++|.|+++|+.+.++.++.+|+|+|+|++++++.++..+.  |+
T Consensus        84 ~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~  163 (503)
T d1wa5b_          84 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA  163 (503)
T ss_dssp             HHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCC
Confidence            5579999999999999999999999999999999999999999999877788999999999999999988888777  79


Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE  259 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  259 (530)
                      +|.++.+|.+ ++.++++.|+|+|+||+.+++++|+.++..|++++|+.++.+.+..+.++++|+|+|+|++..+.+...
T Consensus       164 i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~  242 (503)
T d1wa5b_         164 VPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS  242 (503)
T ss_dssp             HHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred             hHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHH
Confidence            9999999987 789999999999999999999999999999999999999999999999999999999998765544333


Q ss_pred             HHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCC
Q 009647          260 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD  339 (530)
Q Consensus       260 ~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~  339 (530)
                      .  ..+++|.++.++.+.|++++..++|+|.+++.+.++....+++.|+++.++.++ .+++..+..+|+++|+|++.++
T Consensus       243 ~--~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         243 V--VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             H--HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC
T ss_pred             H--HHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc-cCCchhhhhhHHHHHHHHHHHH
Confidence            3  569999999999999999999999999999998888889999999999999998 5888899999999999999999


Q ss_pred             ccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          340 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       340 ~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                      +.++..+++      .|+++.|..++.++++.++++++|+++|++++++.++..+++.|+++.+++++.+++++++++|+
T Consensus       320 ~~~~~~~~~------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~  393 (503)
T d1wa5b_         320 DLQTQVVIN------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  393 (503)
T ss_dssp             HHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHhhhc------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHH
Confidence            888888875      46999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC---------CCcchhHH
Q 009647          420 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP---------NHEGTKLV  490 (530)
Q Consensus       420 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~---------~~~~~~~i  490 (530)
                      |+|+|++.+..   ..    .+++.++++.|++++|+++|...|++++..+|++|.+|+..+.         .+.+...|
T Consensus       394 ~~l~nl~~~~~---~~----~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~i  466 (503)
T d1wa5b_         394 WAISNASSGGL---QR----PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI  466 (503)
T ss_dssp             HHHHHHHHHTT---TC----THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HHHHHHHhccc---cc----HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Confidence            99999987432   11    2678899999999999999999999999999999999986432         23456789


Q ss_pred             HHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCC
Q 009647          491 EREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYG  527 (530)
Q Consensus       491 ~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~~~~~  527 (530)
                      +++||+++|+.||+|+|++||++|..||++||++|||
T Consensus       467 ee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         467 EKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            9999999999999999999999999999999988775

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-49  Score=411.17  Aligned_cols=412  Identities=31%  Similarity=0.560  Sum_probs=370.2

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 009647           90 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        90 ~~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~  169 (530)
                      +++++++++.++   ++|++.+..|+.+++++++...+++++.+++.|++|.|+++|++.+++.+|.+|+|+|+++|+++
T Consensus        12 ~~~i~~lv~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~   88 (434)
T d1q1sc_          12 NWSVEDIVKGIN---SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT   88 (434)
T ss_dssp             SCCHHHHHHHHT---SSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC
T ss_pred             hhhHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            456788888775   99999999999999999999989999999999999999999987666778889999999999998


Q ss_pred             hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCC-----hhHHHHHH
Q 009647          170 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAA  242 (530)
Q Consensus       170 ~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~  242 (530)
                      ++.+..++  |++|.|+.+|.+ ++.++++.|+|+|+|++.+++..|..+.+.|++++|+.++...+     ....+.++
T Consensus        89 ~~~~~~i~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          89 SEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             hhhhhHhhhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            88888877  799999999987 78999999999999999999999999999999999999998643     46678999


Q ss_pred             HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCc
Q 009647          243 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL  322 (530)
Q Consensus       243 ~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~  322 (530)
                      |++++++.+..+...  .....+++|.+..++.++|++++..++|+|.+++..+++....+...|+++.++.++ .+++.
T Consensus       168 ~~l~~~~~~~~~~~~--~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll-~~~~~  244 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATEL  244 (434)
T ss_dssp             HHHHHHTCCCTTCCC--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCH
T ss_pred             HHHHHHhhcccccch--hhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc-ccchh
Confidence            999999987543332  223568999999999999999999999999999988778888888999999999998 58889


Q ss_pred             cchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647          323 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  402 (530)
Q Consensus       323 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~  402 (530)
                      .++.+++++|++++.+++.....+++      .|+++.|..++.+.++.++..|+|+++|++.++......+.+.|++|.
T Consensus       245 ~~~~~al~~l~~l~~~~~~~~~~~~~------~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  318 (434)
T d1q1sc_         245 PIVTPALRAIGNIVTGTDEQTQKVID------AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF  318 (434)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHH------TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             hhhhchhhhhhhHHhhhhHHHHHHHh------ccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHH
Confidence            99999999999999988887777775      469999999999999999999999999999999888999999999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          403 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       403 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                      +++++.+++++++.+|+|+|+|++...     +    .+++..+.+.|++++|+++|+++|++++..++++|.++++.+.
T Consensus       319 li~~l~~~~~~v~~~a~~~l~nl~~~~-----~----~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         319 LVGVLSKADFKTQKEAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHhcC-----C----HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998753     2    3678889999999999999999999999999999999997543


Q ss_pred             C----CcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          483 N----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       483 ~----~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      .    +.++..+++.||++.|+.|++|+|++|++.|..||++||.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         390 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             hcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            2    2356789999999999999999999999999999999995

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-32  Score=281.33  Aligned_cols=367  Identities=20%  Similarity=0.310  Sum_probs=314.0

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh-HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~-~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      .+.|..+++.|.+++ ++.|.+|+.++.++.+..... ...++  |++|.|+++|+++++++++..|+|+|+|+|.++++
T Consensus        12 ~~~i~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~   90 (434)
T d1q1sc_          12 NWSVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE   90 (434)
T ss_dssp             SCCHHHHHHHHTSSC-HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred             hhhHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh
Confidence            567999999999876 778899999999987544332 34454  89999999998756789999999999999998889


Q ss_pred             hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCH-----HHHHHHHH
Q 009647          213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAW  287 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~-----~v~~~a~~  287 (530)
                      .+..+++.|++|+|+.+|.+++..+++.++|+|+|++...  ...+..+...++++.++.++...+.     .....++|
T Consensus        91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~--~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  168 (434)
T d1q1sc_          91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  168 (434)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred             hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc--hHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999653  2345566678999999999986543     45678899


Q ss_pred             HHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc
Q 009647          288 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS  367 (530)
Q Consensus       288 ~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~  367 (530)
                      ++.+++.+...........++++.++.++ .+++++++..++++|++++.+++.....+..      .|+++.|+.++.+
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~------~~~~~~Lv~ll~~  241 (434)
T d1q1sc_         169 TLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK------KGVVPQLVKLLGA  241 (434)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT------TTCHHHHHHHHTC
T ss_pred             HHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhhcccchhhhhhHHHHhh------cccchhccccccc
Confidence            99999986655555555678899999888 5888899999999999999887766666654      4799999999999


Q ss_pred             CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 009647          368 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  447 (530)
Q Consensus       368 ~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  447 (530)
                      +++.++..|++++.|++.+++.....+++.|+++.|+.++.+.+.++++.|+|+|+|++...          .++...+.
T Consensus       242 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~----------~~~~~~i~  311 (434)
T d1q1sc_         242 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVV  311 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC----------HHHHHHHH
T ss_pred             chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc----------chhHHHHh
Confidence            99999999999999999999888899999999999999999999999999999999998743          36677888


Q ss_pred             hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q 009647          448 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG  523 (530)
Q Consensus       448 ~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f~  523 (530)
                      +.|+++.++.++.+++++++..++.+|.++...... .....+.+.|+++.|..+...+++++...+...|.+++.
T Consensus       312 ~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876532 334567788999999999999999999999888776653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-32  Score=285.12  Aligned_cols=367  Identities=17%  Similarity=0.255  Sum_probs=316.0

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChh-hHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCch
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~-~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      ...++.++..+.+++ ...+..|+..+.++.+.... ..+.++  |++|.|+.+|+...+..++..|+|+|+||+.+++.
T Consensus        75 ~~~l~~~~~~~~s~~-~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~  153 (503)
T d1wa5b_          75 QQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  153 (503)
T ss_dssp             -CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            345788888888766 56778899999998764432 344555  79999999998767789999999999999988888


Q ss_pred             hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647          213 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL  292 (530)
Q Consensus       213 ~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  292 (530)
                      ....+...|+++.++.+|.+++.+++..++|+|+||+...  ...++.+...|+++.|+.++.+.+++++..++|+|.++
T Consensus       154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~--~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl  231 (503)
T d1wa5b_         154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  231 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh--HHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999642  34566666789999999999999999999999999999


Q ss_pred             hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647          293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  372 (530)
Q Consensus       293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i  372 (530)
                      +.+...........++++.++.++ .+.+++++..++++|++++.+++.....+++      .|+++.++.++.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~------~~~~~~l~~ll~~~~~~v  304 (503)
T d1wa5b_         232 CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVID------VRIPKRLVELLSHESTLV  304 (503)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH------TTCHHHHHHGGGCSCHHH
T ss_pred             hcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhhhhhhh------hhhhhhhhhcccCCchhh
Confidence            986555555555678999999988 5888999999999999999888777777775      479999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          373 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                      +..|+++++|++.+.+.....+++.|+++.|..++.+++..++++++|+|+|++.++          .++...+++.|++
T Consensus       305 ~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~----------~~~~~~i~~~~~l  374 (503)
T d1wa5b_         305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN----------TEQIQAVIDANLI  374 (503)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc----------HHHHHHHHHcccc
Confidence            999999999999999899999999999999999999999999999999999998742          3677888999999


Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCC-cchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          453 SGFIDLVRSADIEAARLGLQFMELVLRGMPNH-EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~-~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                      +.++.++.+.+.++...+.++|.++...+.+. .....+.+.|+++.|..+....++++...+...|...+
T Consensus       375 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             chhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998766432 23456678999999998888888998888877776654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-30  Score=275.74  Aligned_cols=397  Identities=17%  Similarity=0.207  Sum_probs=327.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  175 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~  175 (530)
                      +..++..+.++++..+..|+.+|.++....+ .....+.+.|++|.|+.+|.+++ +.++..++++|.+++.++.+....
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-hhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHH
Confidence            3444455569999999999999999865443 34456778999999999998766 678888999999999888777666


Q ss_pred             hc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          176 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       176 i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      +.  |+++.|+.+|..++...++..+++++.|++. +++.+..+++.|++++|+.++.+++..+..+++|++++++....
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            65  7899999999876778999999999999997 57889999999999999999999999999999999999986532


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc-CCCccchhhhHHHH
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSL  332 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~v~~~al~~L  332 (530)
                      ..     ....+++|.|++++.++|++++..++++|.+|+.+++.....+.+.|+++.++..+.. ++.+.++.+++.+|
T Consensus       260 ~~-----~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         260 KQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TC-----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ch-----hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            21     1135899999999999999999999999999998888888888999999999988853 44567888999999


Q ss_pred             hhhhcCCccc--cchhcccCCCcchhhHHHHHHHhccCc-HhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcC
Q 009647          333 GNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST  409 (530)
Q Consensus       333 ~nl~~~~~~~--~~~~i~~g~~~~~~~l~~L~~lL~~~~-~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~  409 (530)
                      ++++......  .+..+.     ..++++.|+.++.+++ ..++..+++++.|++.+ ++....+.+.|+++.|+++|.+
T Consensus       335 ~~l~~~~~~~~~~~~~i~-----~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~  408 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVR-----LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHH-----HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred             hcccchhhcchhhhhhHH-----hcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhc
Confidence            9999765432  222221     3478999999997654 46888999999999875 4667788999999999999965


Q ss_pred             CCh----------------------hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647          410 SPF----------------------DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  467 (530)
Q Consensus       410 ~~~----------------------~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~  467 (530)
                      ++.                      ++.+.++.++.+++..           ......+.+.|++++|+++|.++++.++
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~-----------~~~r~~~~~~~~i~~Lv~lL~~~~~~v~  477 (529)
T d1jdha_         409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-----------VHNRIVIRGLNTIPLFVQLLYSPIENIQ  477 (529)
T ss_dssp             HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-----------HHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             CCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC-----------HHHHHHHHHCCCHHHHHHHhCCCCHHHH
Confidence            443                      3455666677777653           2445667789999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHh
Q 009647          468 RLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK  520 (530)
Q Consensus       468 ~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~  520 (530)
                      ..++.+|.++..   +...++.+.+.||++.|.+|.+++|+.+++.|...|.+
T Consensus       478 ~~a~~aL~~L~~---~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~  527 (529)
T d1jdha_         478 RVAAGVLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR  527 (529)
T ss_dssp             HHHHHHHHHHTT---SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---ChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999753   23457889999999999999999999999999988865

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-31  Score=276.74  Aligned_cols=391  Identities=17%  Similarity=0.161  Sum_probs=319.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH-cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 009647           91 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        91 ~~~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~-~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~  169 (530)
                      +.++.|+++++   ++|...+..|+..+.++...+  +....++. .|+||.|+.+|...++++.+..|+++|.+++.+ 
T Consensus        17 ~aip~L~~lL~---~~~~~v~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-   90 (529)
T d1jdha_          17 RAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-   90 (529)
T ss_dssp             CHHHHHHHHHT---CSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-
Confidence            45677777764   899999999999999985432  32334444 578999999998766677878899999999864 


Q ss_pred             hhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHH
Q 009647          170 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN  247 (530)
Q Consensus       170 ~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n  247 (530)
                      ++....++  |++|.|+.+|++ ++++++..|+|+|+|++.+++..|..+.+.|++|+|+.+++++++.++..++|+|.+
T Consensus        91 ~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  169 (529)
T d1jdha_          91 REGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHCCCHHHHHHHhCC-CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHH
Confidence            45566666  799999999987 889999999999999999888999999999999999999999999999999999999


Q ss_pred             hhcCCCCCchhhHHHhhchHHHHHHHhccC-CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchh
Q 009647          248 LIKGPDPKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI  326 (530)
Q Consensus       248 L~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~  326 (530)
                      ++...  ......+...++++.++.++.+. ++.++..+++++.+++. +++....+++.|+++.|+.++ .+++..++.
T Consensus       170 l~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~  245 (529)
T d1jdha_         170 LAYGN--QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ  245 (529)
T ss_dssp             HHTTC--HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHH
T ss_pred             Hhhhh--hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHh-cccchhhhh
Confidence            99763  23344555789999999999754 46789999999999997 556677889999999999988 578888999


Q ss_pred             hhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHH
Q 009647          327 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL  406 (530)
Q Consensus       327 ~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~l  406 (530)
                      .+++++.+++.......   .      ..|+++.|+.++.++++.++..|+++|+|++.+++.....+.+.++++.|+.+
T Consensus       246 ~a~~~l~~ls~~~~~~~---~------~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~  316 (529)
T d1jdha_         246 NCLWTLRNLSDAATKQE---G------MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT  316 (529)
T ss_dssp             HHHHHHHHHHTTCTTCS---C------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             hhhhHHHhccccccchh---h------hhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHH
Confidence            99999999975543221   1      24799999999999999999999999999999998888899999999999998


Q ss_pred             hc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCC-HHHHHHHHHHHHHHHccCCC
Q 009647          407 LS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD-IEAARLGLQFMELVLRGMPN  483 (530)
Q Consensus       407 L~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d-~~i~~~~L~~L~~il~~~~~  483 (530)
                      +.  ++.++++..|+++|.|++.....   .    ......+...|+++.|+.++..++ ..++..++.+|.++...   
T Consensus       317 l~~~~~~~~~~~~a~~aL~~l~~~~~~---~----~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~---  386 (529)
T d1jdha_         317 VLRAGDREDITEPAICALRHLTSRHQE---A----EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC---  386 (529)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSTT---H----HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS---
T ss_pred             HHhhhcchhHHHHHHHHhhcccchhhc---c----hhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh---
Confidence            83  46678999999999999875321   0    123345668899999999998754 56778888889888532   


Q ss_pred             CcchhHHHHhchHHHHHHHhcCCcHHHH
Q 009647          484 HEGTKLVEREDGIDAMERFQFHENEDLR  511 (530)
Q Consensus       484 ~~~~~~i~~~ggl~~L~~L~~~~~~~i~  511 (530)
                      ......+.+.|+++.|..+..+.+.++.
T Consensus       387 ~~~~~~l~~~g~i~~L~~lL~~~~~~~~  414 (529)
T d1jdha_         387 PANHAPLREQGAIPRLVQLLVRAHQDTQ  414 (529)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhcccHHHHHHHHhcCCHHHH
Confidence            2346678889999999888766555443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-26  Score=235.52  Aligned_cols=364  Identities=13%  Similarity=0.105  Sum_probs=274.0

Q ss_pred             CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhH
Q 009647          137 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR  214 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r  214 (530)
                      +.||.||.+|++++ +++|..|+++|.|+|.++++.+..+.  |+||.|+++|.+ +++++++.|+|+|+|++.++++.+
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            46899999999877 67889999999999998888888887  899999999987 899999999999999998899999


Q ss_pred             HHHHhcCChhhhHhhcCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh----------------ccC
Q 009647          215 NVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL----------------KRA  277 (530)
Q Consensus       215 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL----------------~~~  277 (530)
                      ..+.+.|+++.|+.++.+ .+..++..++|+|.+++....  .....  ...+++.++..+                ...
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEEL--IADALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS--THHHH--HHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh--hHHHH--HhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            999999999999998875 578999999999999997642  22222  234455554443                245


Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC-----CCccchhhhHHHHhhhhcC--------------
Q 009647          278 DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-----NSLQLLIPVLRSLGNLVAG--------------  338 (530)
Q Consensus       278 d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~-----~~~~v~~~al~~L~nl~~~--------------  338 (530)
                      +++++..++++|.+++..++.....+...|+++.++.++...     ........+...+.+....              
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  235 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence            678999999999999985554444555678889998887421     1111111111111111000              


Q ss_pred             -C-----------------------------------ccccchhcccCCCcchhhHHHHHHHhcc-CcHhHHHHHHHHHH
Q 009647          339 -D-----------------------------------SSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLS  381 (530)
Q Consensus       339 -~-----------------------------------~~~~~~~i~~g~~~~~~~l~~L~~lL~~-~~~~i~~~A~~~Ls  381 (530)
                       .                                   ......+      ...++++.++.++.+ .++.++..+++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~  309 (457)
T d1xm9a1         236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL------YHSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGG------GSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHH------HhhcHHHHHHHHHhcccchHHHHHHHHHHH
Confidence             0                                   0000001      245788989888865 46788999999999


Q ss_pred             HHhcCCHH-----HHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHH
Q 009647          382 NIAAGSVE-----HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI  456 (530)
Q Consensus       382 nl~~~~~~-----~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~  456 (530)
                      +++.+...     ....+.+.|++|.|++++.++++++++.|+++|+|++..+           +. +..+..++++.++
T Consensus       310 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~-----------~~-~~~i~~~~i~~li  377 (457)
T d1xm9a1         310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-----------LL-HRVMGNQVFPEVT  377 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-----------GG-HHHHHHHTHHHHH
T ss_pred             HHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh-----------hH-HHHHHHhhHHHHH
Confidence            99876432     2233456799999999999999999999999999998753           12 3344567899999


Q ss_pred             hhhccC------CHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcCCCC
Q 009647          457 DLVRSA------DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKYFGEDY  526 (530)
Q Consensus       457 ~lL~~~------d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~-~~~~~i~~~A~~il~~~f~~~~  526 (530)
                      .+|...      +++++..++.+|.++....  ...++.+.+.||++.|.++.. ++++.+++.|..+|.+.|.+.+
T Consensus       378 ~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHhccccCcCCcHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            998642      3568889999999998543  346788999999999999865 5688999999999999998765

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-24  Score=219.88  Aligned_cols=361  Identities=16%  Similarity=0.169  Sum_probs=263.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009647           93 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE  172 (530)
Q Consensus        93 ~~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~  172 (530)
                      ++.+++++.   ++|++.+..|+..|.++ +.+.+.....+++.|+||.|+++|++++ +.++..|+++|.|++.++++.
T Consensus         4 ip~lv~~L~---~~~~~~~~~a~~~l~~l-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLS---SQDEKYQAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHH---SSCTHHHHHHHHHHHHH-TSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHhC---CCCHHHHHHHHHHHHHH-HcCCHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHH
Confidence            456666665   99999999999999998 4444555678889999999999998765 778888999999999888887


Q ss_pred             HHhhc--CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhc----------------CCCC
Q 009647          173 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM----------------LPNK  234 (530)
Q Consensus       173 ~~~i~--~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL----------------~~~~  234 (530)
                      ...+.  |+++.|+.++.+..++++++.|+|+|.+++.+. ..+......| +++++..+                ...+
T Consensus        79 ~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~  156 (457)
T d1xm9a1          79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHH-HHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhccccc
Confidence            77776  799999999987778999999999999999854 4555555544 44444332                2346


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCC------HHHHHHHHHHHHHhh---------------
Q 009647          235 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRAD------EELTTEVAWVVVYLS---------------  293 (530)
Q Consensus       235 ~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d------~~v~~~a~~~L~~L~---------------  293 (530)
                      ..+++.+++++.+++....  .....+...++++.++.++.+..      ......+...+.+..               
T Consensus       157 ~~v~~~a~~~l~~~~~~~~--~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  234 (457)
T d1xm9a1         157 PEVFFNATGCLRNLSSADA--GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE  234 (457)
T ss_dssp             HHHHHHHHHHHHHHTTSHH--HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCch--HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            7899999999999986532  22223335678899988876321      111111111111110               


Q ss_pred             -----------------------------------cCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcC
Q 009647          294 -----------------------------------ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG  338 (530)
Q Consensus       294 -----------------------------------~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~  338 (530)
                                                         .........+...++++.++.++..+.++.+...+.+++.+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  314 (457)
T d1xm9a1         235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhc
Confidence                                               001111222334456777888776666777888999999999876


Q ss_pred             Ccccc----chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCC----
Q 009647          339 DSSTI----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS----  410 (530)
Q Consensus       339 ~~~~~----~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~----  410 (530)
                      .....    +..+.     ..++++.|+.++.++++.++..++++++|++... .....+. .++++.++.+|...    
T Consensus       315 ~~~~~~~~~~~~~~-----~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~-~~~~~i~-~~~i~~li~~L~~~~~~~  387 (457)
T d1xm9a1         315 KGLMSSGMSQLIGL-----KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVMG-NQVFPEVTRLLTSHTGNT  387 (457)
T ss_dssp             SSSHHHHHHHHHHT-----TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GGHHHHH-HHTHHHHHHTTTSCCSCS
T ss_pred             cccchHHHHHHHHH-----HcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh-hHHHHHH-HhhHHHHHHHHhccccCc
Confidence            54321    12221     3579999999999999999999999999998754 4444444 46899999998542    


Q ss_pred             --ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHc
Q 009647          411 --PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLR  479 (530)
Q Consensus       411 --~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~  479 (530)
                        +.+++..|+++|.|++...          .+..+.+++.|++++|++++.+. ++.+...|..+|.+++.
T Consensus       388 ~~~~~v~~~a~~~L~~l~~~~----------~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         388 SNSEDILSSACYTVRNLMASQ----------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTC----------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             CCcHHHHHHHHHHHHHHhcCC----------HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence              3569999999999998643          25678899999999999999875 57889999999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.6e-19  Score=168.41  Aligned_cols=196  Identities=17%  Similarity=0.159  Sum_probs=165.8

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc--CCcH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ-CLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP  181 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~-lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~--~~v~  181 (530)
                      +.|.+.+..|+..|..+....+  ....+...|+++.++. +|.++ +++++..|+++|++++.+++.....++  |++|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d--~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            3467788899999999964322  3456788999999987 55554 478888899999999998887766666  7999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 009647          182 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI  261 (530)
Q Consensus       182 ~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v  261 (530)
                      .|+.+|.+.+++.++..|+|+|++++.+++..+..+...|+++.|++++.+++..++..++|+|.+|+.+. + .....+
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~  182 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-P-EHKGTL  182 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-G-GGHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc-H-HHHHHH
Confidence            99999976578999999999999999999999999999999999999999999999999999999999763 2 234455


Q ss_pred             HhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHh
Q 009647          262 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK  305 (530)
Q Consensus       262 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~  305 (530)
                      ...|++|.|+.++.+++++++..++|+|.+|+.+++........
T Consensus       183 ~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            57899999999999999999999999999999877766665544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.5e-18  Score=163.84  Aligned_cols=197  Identities=12%  Similarity=0.116  Sum_probs=171.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 009647          191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA  269 (530)
Q Consensus       191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~  269 (530)
                      .+.+.++.|+.+|.+++. +.+.+..+...|++++++. ++++++++++..|+|+|++++.+. + .....+...+++|.
T Consensus        29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~-~-~~~~~~~~~~~i~~  105 (264)
T d1xqra1          29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-A-AIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-H-HHHHHHHHTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-H-HHHHHHHHcCchHH
Confidence            457889999999999996 5677888899999999885 788899999999999999999753 2 33445557899999


Q ss_pred             HHHHhc-cCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcc
Q 009647          270 ILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV  348 (530)
Q Consensus       270 L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~  348 (530)
                      |++++. ..++.++..++|+|++++.+++.....+...|+++.|+.+| .+++..++..++++|++++.+++.....+.+
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999997 46788999999999999998888888899999999999999 5888999999999999999888777777775


Q ss_pred             cCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647          349 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS  397 (530)
Q Consensus       349 ~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~  397 (530)
                            .|++|.|+.+|.++++.++..|+|+|.+++..++.....+...
T Consensus       185 ------~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         185 ------MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             ------TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             ------hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence                  4799999999999999999999999999999888887776543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.9e-14  Score=146.49  Aligned_cols=376  Identities=12%  Similarity=0.113  Sum_probs=253.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHH
Q 009647          103 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL  182 (530)
Q Consensus       103 l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~  182 (530)
                      +++.++.++..|+..+..+...-.    ...+...++|.+..++..++ +.++..|+.++..++...+.. ...-..+|.
T Consensus       173 ~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~  246 (588)
T d1b3ua_         173 CSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-DLEALVMPT  246 (588)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-HHHHHTHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH-HHHHHHHHH
Confidence            358899999999999999866433    23445677888888877544 566566889999887532221 111136788


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 009647          183 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK  262 (530)
Q Consensus       183 L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~  262 (530)
                      +..++.+ +++.||..++.+|++++..   .........+++.+..++++++.+++..+++++..++..-....... ..
T Consensus       247 l~~~~~D-~~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~-~~  321 (588)
T d1b3ua_         247 LRQAAED-KSWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN-VI  321 (588)
T ss_dssp             HHHHHTC-SSHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH-HH
T ss_pred             HHHhccc-ccHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh-hh
Confidence            8888877 7899999999999998742   22233445678999999999999999999999999987532222221 11


Q ss_pred             hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcC--CchhHHH----------------------------------HHhc
Q 009647          263 VDGLLDAILRHLKRADEELTTEVAWVVVYLSAL--SNVATSL----------------------------------LVKS  306 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~----------------------------------i~~~  306 (530)
                      ...++|.+...+.+.++.++..++.++..++..  .......                                  -+..
T Consensus       322 ~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~  401 (588)
T d1b3ua_         322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ  401 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhh
Confidence            346677777777777777766666655554421  0000000                                  0011


Q ss_pred             CchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcC
Q 009647          307 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG  386 (530)
Q Consensus       307 g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~  386 (530)
                      .+++.+...+ .+.++.++..++.+++.++..-...   .+      ...+.+.+..++.++...||..|+++++.++..
T Consensus       402 ~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~~~~---~~------~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~  471 (588)
T d1b3ua_         402 SLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVE---FF------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGG---GC------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHcChH---hH------HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence            1233333433 3445555666666666555321100   01      235778888888888899999999999999753


Q ss_pred             -CHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHH
Q 009647          387 -SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE  465 (530)
Q Consensus       387 -~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~  465 (530)
                       +++..    ...++|.+..++.++++.+|..++.++..+....             -.......+++.+..++.++.+.
T Consensus       472 ~~~~~~----~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~-------------~~~~~~~~ilp~ll~~~~D~v~n  534 (588)
T d1b3ua_         472 FGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-------------GQDITTKHMLPTVLRMAGDPVAN  534 (588)
T ss_dssp             HCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-------------HHHHHHHHTHHHHHHGGGCSCHH
T ss_pred             hCcHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc-------------ChHHHHHHHHHHHHHHcCCCCHH
Confidence             22211    2237888999999999999999999998886321             11233456899999999999999


Q ss_pred             HHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          466 AARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       466 i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      ++..++++|..+....+.    .. ......+.|+.|+++++.+|+..|...++..
T Consensus       535 VR~~a~~~l~~i~~~~~~----~~-~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         535 VRFNVAKSLQKIGPILDN----ST-LQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHHHHHGGGSCH----HH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCc----Hh-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999999999999765432    11 2233467788999999999999999988753

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-13  Score=145.61  Aligned_cols=298  Identities=13%  Similarity=0.106  Sum_probs=214.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc--CChhhH
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA--GKQEET  173 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~--~~~~~~  173 (530)
                      |..+++.+.++|+..|..|++.+..+...- .+  .. ....++|.|.+++..+  ++++..++..|.++..  +.++. 
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~l-g~--~~-~~~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~~~~-   84 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL-GV--ER-TRSELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGGPEY-   84 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS-CH--HH-HHHTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTSGGG-
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-Cc--Hh-hHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCChhH-
Confidence            444566777999999999999998873321 11  11 2356889999988643  4666777788877763  22222 


Q ss_pred             HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          174 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       174 ~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                        +...+|.+..++.. ++..||+.|+.+|+.++...+.   ..+....+|.+..+..++....+..++..+..++...+
T Consensus        85 --~~~ll~~l~~l~~~-~~~~Vr~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~  158 (588)
T d1b3ua_          85 --VHCLLPPLESLATV-EETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS  158 (588)
T ss_dssp             --GGGGHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred             --HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Confidence              22367777777776 7899999999999999875322   22333445555567777667777788888888874322


Q ss_pred             CCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHh
Q 009647          254 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG  333 (530)
Q Consensus       254 ~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~  333 (530)
                          ...  ...+++.+..++.++++.++..++.++..++..-...   .....+++.+..++ .+++..++..|+.+++
T Consensus       159 ----~~~--~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~  228 (588)
T d1b3ua_         159 ----SAV--KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLA-SDEQDSVRLLAVEACV  228 (588)
T ss_dssp             ----HHH--HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHH-TCSCHHHHTTHHHHHH
T ss_pred             ----HHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH---HHHHHHHHHHHHHh-cCCchhhHHHHHHHHH
Confidence                122  3467888999999999999999999999998743321   22345677777777 5788899999999999


Q ss_pred             hhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChh
Q 009647          334 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD  413 (530)
Q Consensus       334 nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~  413 (530)
                      .++...+...  .       ...++|.+..++.+.++.||..++.++++++.....   ......++|.+..++.+.+.+
T Consensus       229 ~i~~~~~~~~--~-------~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~  296 (588)
T d1b3ua_         229 NIAQLLPQED--L-------EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAE  296 (588)
T ss_dssp             HHHHHSCHHH--H-------HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHH
T ss_pred             HhhccCCHHH--H-------HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchH
Confidence            9986443221  1       124788999999999999999999999998753211   123345789999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 009647          414 IKKEVAYVLGNLCVS  428 (530)
Q Consensus       414 v~~eA~~aL~nl~~~  428 (530)
                      +|..|++++..++..
T Consensus       297 vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         297 VRAAASHKVKEFCEN  311 (588)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.1e-11  Score=135.00  Aligned_cols=351  Identities=15%  Similarity=0.167  Sum_probs=205.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHH
Q 009647          140 PVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL  218 (530)
Q Consensus       140 ~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~  218 (530)
                      |.+.+.+.+++ ...+..|+.+|+.++.+..+.....+ ..+|.++..|++ +++.||..++|+||.++.........-.
T Consensus       398 ~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~  475 (888)
T d1qbkb_         398 PLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTY  475 (888)
T ss_dssp             HHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred             HHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            44444444433 33433478999999988765544444 588999999987 7899999999999998852211111122


Q ss_pred             hcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHH--------------
Q 009647          219 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE--------------  284 (530)
Q Consensus       219 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~--------------  284 (530)
                      -...++.++..+.++++.++..|+|+|.+++....+... ..  ...+++.++..+...+......              
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~-p~--~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV-PY--LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG-GG--HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh-hH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            345788888888889999999999999999864222211 11  1122333333222222111111              


Q ss_pred             -------------------------------HHHHHHHhhcCC-------------------------------------
Q 009647          285 -------------------------------VAWVVVYLSALS-------------------------------------  296 (530)
Q Consensus       285 -------------------------------a~~~L~~L~~~~-------------------------------------  296 (530)
                                                     ...+++.++...                                     
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  632 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE  632 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                                           111111111000                                     


Q ss_pred             ---------------------chhH-HHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcc
Q 009647          297 ---------------------NVAT-SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT  354 (530)
Q Consensus       297 ---------------------~~~~-~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~  354 (530)
                                           .... ..+....+++.+...+ .+.++.++..|+.++|.++..........+       
T Consensus       633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-------  704 (888)
T d1qbkb_         633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCI-------  704 (888)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-------
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHh-CCCChHHHHHHHHHHHHHHHhhhHHHHHHH-------
Confidence                                 0000 0000111223333333 345566777777777777765554444444       


Q ss_pred             hhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCC--hhHHHHHHHHHHHhcCCCCCC
Q 009647          355 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP--FDIKKEVAYVLGNLCVSPTEG  432 (530)
Q Consensus       355 ~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~--~~v~~eA~~aL~nl~~~~~~~  432 (530)
                      ..+++.+..-|.++...++..|+|+++.|+....+.....++ .+++.|+.++++++  ..++..++.+|+.++...   
T Consensus       705 ~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~---  780 (888)
T d1qbkb_         705 ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC---  780 (888)
T ss_dssp             HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC---
Confidence            258888888888888899999999999998654444333322 37888999997754  458899999999987531   


Q ss_pred             CCCchhHHHHHHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHh--cCCcHH
Q 009647          433 EGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ--FHENED  509 (530)
Q Consensus       433 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~--~~~~~~  509 (530)
                         |    +.+... =..+++++|.-|.. .|.+-...+..++..+....+........      ....-..  ....++
T Consensus       781 ---p----~~~~~~-l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~------~~~~~i~~~~~~~~~  846 (888)
T d1qbkb_         781 ---P----QEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFI------FFCDAVASWINPKDD  846 (888)
T ss_dssp             ---H----HHHGGG-GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHH------HHHHHHTTCSSCCHH
T ss_pred             ---H----HHHHhh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHH------HHHHHHHhcCCCCHH
Confidence               2    211111 13477888888876 45555777888888888653321111110      1111111  124567


Q ss_pred             HHHHHHHHHHhh
Q 009647          510 LRNMANGLVDKY  521 (530)
Q Consensus       510 i~~~A~~il~~~  521 (530)
                      ++.....+|..|
T Consensus       847 ~~~~~~~~l~~~  858 (888)
T d1qbkb_         847 LRDMFCKILHGF  858 (888)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.2e-10  Score=126.63  Aligned_cols=396  Identities=11%  Similarity=0.111  Sum_probs=256.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHh
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA  175 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~  175 (530)
                      +-++++.++++|++.|+.|+..|.+.+...... .+.-....+++.|+.+|...+ +++|..|+.||..++..-++.  .
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~-~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~--~   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--Q   80 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccc-cChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHh--h
Confidence            445666778999999999999999988644321 111223458899999997654 788888999999998654322  2


Q ss_pred             hcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCc------hhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHh
Q 009647          176 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE------EFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNL  248 (530)
Q Consensus       176 i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~------~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL  248 (530)
                      +...++.|+..+.+ ++..++..+..+|..+...-+      .... .+...+++.+...+. ..+..++..++-+|..+
T Consensus        81 ~~~l~~~L~~~l~~-~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          81 VETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAA-NVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             HHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHH-HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHhcccccccchhHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            22467888887776 677888888888876653211      1111 111223444554444 34678888888888888


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhh
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV  328 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~a  328 (530)
                      .....+.. ...  ...+++.++..+.++++.++..|+.+|+.++...+..    .-..+++.++..+..+.+...+..+
T Consensus       159 ~~~~g~~l-~~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~  231 (1207)
T d1u6gc_         159 LSRQGGLL-VNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTY  231 (1207)
T ss_dssp             HHHTCSSC-TTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHhhHhh-HHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHH
Confidence            75432211 111  3467888888899999999999999999998643321    1124567777777666677788889


Q ss_pred             HHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHH----HHHHHHhC--C----
Q 009647          329 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE----HKQLIHSS--E----  398 (530)
Q Consensus       329 l~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~----~~~~li~~--~----  398 (530)
                      +.+++.++..........+       ..++|.+...+.+.+..+|..++.++..++...+.    ....++..  .    
T Consensus       232 ~~~l~~l~~~~~~~~~~~l-------~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~  304 (1207)
T d1u6gc_         232 IQCIAAISRQAGHRIGEYL-------EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY  304 (1207)
T ss_dssp             HHHHHHHHHHSSGGGTTSC-------TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHcchhhHHHH-------HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhc
Confidence            9999999876655444333       36899999999999999999999999988765332    11111110  0    


Q ss_pred             --------------------------cHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCCh
Q 009647          399 --------------------------ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL  452 (530)
Q Consensus       399 --------------------------~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i  452 (530)
                                                ..+....-..+....+|+.|+.+|..++...      |    +..... -..++
T Consensus       305 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~------~----~~l~~~-~~~~~  373 (1207)
T d1u6gc_         305 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR------H----EMLPEF-YKTVS  373 (1207)
T ss_dssp             C------------------------------------CTTHHHHHHHHHHHHHHTTC------C----TTHHHH-HTTTH
T ss_pred             CcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH------H----HHHHHH-HHHHH
Confidence                                      0001111122344678999999999987642      1    112222 24578


Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCc--------------chhHHHH--hchHHHHHHHhcCCcHHHHHHHHH
Q 009647          453 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHE--------------GTKLVER--EDGIDAMERFQFHENEDLRNMANG  516 (530)
Q Consensus       453 ~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~--------------~~~~i~~--~ggl~~L~~L~~~~~~~i~~~A~~  516 (530)
                      +.|+..+...++.++..++.++..++.......              ....+.+  ...++.+.....+.+..++..+..
T Consensus       374 ~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~  453 (1207)
T d1u6gc_         374 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN  453 (1207)
T ss_dssp             HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHH
Confidence            999999988889999888888888775432110              0111111  124455666677888888888877


Q ss_pred             HHHhhc
Q 009647          517 LVDKYF  522 (530)
Q Consensus       517 il~~~f  522 (530)
                      ++..+.
T Consensus       454 ~l~~l~  459 (1207)
T d1u6gc_         454 MLTELV  459 (1207)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.4e-10  Score=104.96  Aligned_cols=255  Identities=13%  Similarity=0.084  Sum_probs=188.4

Q ss_pred             cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH
Q 009647          136 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN  215 (530)
Q Consensus       136 ~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~  215 (530)
                      ....+.|+++|++++ +.++..|+.+|..+..  +       .++|.|+.++.+ +++.++..|+++|+.+.... ...+
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~-------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~-~~~~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q-------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICK-KCED   85 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H-------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCT-TTHH
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccc-cccc
Confidence            456778889999655 7787889999988753  2       257999999987 78999999999999987532 2222


Q ss_pred             HHHhcCChhhhHh-hcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009647          216 VLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA  294 (530)
Q Consensus       216 ~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  294 (530)
                      .+     ++.+.. +++++++.++..++++|.+++.... .    .  ....++.+...+.++++.++..+++++..+..
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-~----~--~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNP-I----Y--SPKIVEQSQITAFDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-G----G--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccc-h----h--hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch
Confidence            21     333443 4567899999999999999986431 1    1  24677888888888999999999888876543


Q ss_pred             CCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHH
Q 009647          295 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK  374 (530)
Q Consensus       295 ~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~  374 (530)
                                 ...++.+..++ ...+..+...+..+++++....               ....+.+...+.+.+..++.
T Consensus       154 -----------~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~  206 (276)
T d1oyza_         154 -----------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------------SDIRDCFVEMLQDKNEEVRI  206 (276)
T ss_dssp             ------------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC---------------HHHHHHHHHHTTCSCHHHHH
T ss_pred             -----------HHHHHHHHHhc-ccccchhhhhHHHHHHhhhccc---------------cccchhhhhhhhhhhhhhhh
Confidence                       24566777777 4667777777888777765443               24677788888999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH
Q 009647          375 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG  454 (530)
Q Consensus       375 ~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~  454 (530)
                      .+.++++.+..           ..++|.|++.+.++  .++..|+++|+.+..                     .++++.
T Consensus       207 ~~~~al~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~---------------------~~~~~~  252 (276)
T d1oyza_         207 EAIIGLSYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---------------------KTLLPV  252 (276)
T ss_dssp             HHHHHHHHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---------------------GGGHHH
T ss_pred             hhccccchhhh-----------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC---------------------HHHHHH
Confidence            99999987632           23688888888754  588999999998732                     236678


Q ss_pred             HHhhhcc-CCHHHHHHHHHHHH
Q 009647          455 FIDLVRS-ADIEAARLGLQFME  475 (530)
Q Consensus       455 L~~lL~~-~d~~i~~~~L~~L~  475 (530)
                      |..+|.. +|.+++..++++|.
T Consensus       253 L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         253 LDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHccCCCHHHHHHHHHHHc
Confidence            8888876 57788888888764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.4e-09  Score=101.97  Aligned_cols=254  Identities=10%  Similarity=0.041  Sum_probs=185.8

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT  258 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~  258 (530)
                      ..+.|+++|.+ +++.||..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|..+.....  .  
T Consensus        20 ~~~~L~~~L~d-~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~--~--   83 (276)
T d1oyza_          20 NDDELFRLLDD-HNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--C--   83 (276)
T ss_dssp             CHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--T--
T ss_pred             CHHHHHHHhcC-CCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--c--
Confidence            56788999987 899999999999998753  1         357999999999999999999999999864321  1  


Q ss_pred             hHHHhhchHHHHH-HHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhc
Q 009647          259 ELIKVDGLLDAIL-RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA  337 (530)
Q Consensus       259 ~~v~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~  337 (530)
                          ....++.+. .+++++++.++..++++|..++........     .+++.+...+ .+.++.++..++.+++.+..
T Consensus        84 ----~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          84 ----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             ----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             ----ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch
Confidence                123344444 456688999999999999999864432222     3455666666 46777788888888886531


Q ss_pred             CCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHH
Q 009647          338 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE  417 (530)
Q Consensus       338 ~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~e  417 (530)
                                       ...++.+..++.+.+..++..+.+++.++......         ..+.++..+.+.+..++..
T Consensus       154 -----------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  207 (276)
T d1oyza_         154 -----------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIE  207 (276)
T ss_dssp             ------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHH
T ss_pred             -----------------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhh
Confidence                             23678888899999999999999999988776643         4556778888999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHH
Q 009647          418 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID  497 (530)
Q Consensus       418 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~  497 (530)
                      +.+++..+-.                     ..+++.|++.+.++  .+...++.+|..+   + +         ...++
T Consensus       208 ~~~al~~~~~---------------------~~~~~~L~~~l~d~--~vr~~a~~aL~~i---g-~---------~~~~~  251 (276)
T d1oyza_         208 AIIGLSYRKD---------------------KRVLSVLCDELKKN--TVYDDIIEAAGEL---G-D---------KTLLP  251 (276)
T ss_dssp             HHHHHHHTTC---------------------GGGHHHHHHHHTSS--SCCHHHHHHHHHH---C-C---------GGGHH
T ss_pred             hccccchhhh---------------------hhhHHHHHHHhCCh--HHHHHHHHHHHHc---C-C---------HHHHH
Confidence            9999987632                     13567788888744  4666777777766   1 1         23556


Q ss_pred             HHHHH-hcCCcHHHHHHHHHHHHh
Q 009647          498 AMERF-QFHENEDLRNMANGLVDK  520 (530)
Q Consensus       498 ~L~~L-~~~~~~~i~~~A~~il~~  520 (530)
                      .|..+ ..+++.+++..|..-|.+
T Consensus       252 ~L~~~l~~~~d~~vr~~A~~~L~k  275 (276)
T d1oyza_         252 VLDTMLYKFDDNEIITSAIDKLKR  275 (276)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHHHccCCCHHHHHHHHHHHcc
Confidence            66654 455678999988877653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.2e-08  Score=98.97  Aligned_cols=387  Identities=12%  Similarity=0.104  Sum_probs=240.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChhhHH
Q 009647           96 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus        96 l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~-~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      |.+++..+.++|.+.+.+|...|..+...+  +       .+.++.|...|.+++. ..++.-|+-.|.|..........
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~   72 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVEN--L-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   72 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhh
Confidence            556677777999999999999999985431  2       1356777888865543 45555678888887755432211


Q ss_pred             hh-------c------CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHH
Q 009647          175 AL-------L------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVR  239 (530)
Q Consensus       175 ~i-------~------~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~  239 (530)
                      ..       +      ...+.++..+.+ +++ ++..++.+++.++...  ... -.-.+.++.++..+.++  +...+.
T Consensus        73 ~~~~~~~~~l~~~~~~~i~~~ll~~~~~-~~~-~~~~~~~~~~~i~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~~~~  147 (458)
T d1ibrb_          73 AQYQQRWLAIDANARREVKNYVLQTLGT-ETY-RPSSASQCVAGIACAE--IPV-NQWPELIPQLVANVTNPNSTEHMKE  147 (458)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCS-SSCSHHHHHHHHHHHH--GGG-TCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             hHHhhhhccCCHHHHHHHHHHHHhccCC-CcH-HHHHHHHHHHHHHHHh--CCc-ccCcchhHHHHHHHHhhcchHHHHH
Confidence            11       0      134456676665 333 3344555555554310  000 00124677777777653  567788


Q ss_pred             HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--CHHHHHHHHHHHHHhhcCCchhHH-HHHhcCchHHHHHHH
Q 009647          240 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVERL  316 (530)
Q Consensus       240 ~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~Lv~lL  316 (530)
                      .++.++..++....+......  ...+++.++..+.++  +.+++..++.++.++......... ........+.+..++
T Consensus       148 ~~l~~l~~~~~~~~~~~~~~~--~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  225 (458)
T d1ibrb_         148 STLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT  225 (458)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhccchhhhhh--HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHh
Confidence            899999988864322222222  346788888888754  467999999999999864332211 112223445555555


Q ss_pred             hcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHH-----
Q 009647          317 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-----  391 (530)
Q Consensus       317 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~-----  391 (530)
                       .+++++++..++.+++.++..........+.      ....+.+...+.+.+..++..|+..+..++.......     
T Consensus       226 -~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~  298 (458)
T d1ibrb_         226 -QCPDTRVRVAALQNLVKIMSLYYQYMETYMG------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE  298 (458)
T ss_dssp             -TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             5778889999999999998665544333321      2345556677788888999999999988864211111     


Q ss_pred             ----------------HHHHhCCcHHHHHHHhcC-------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 009647          392 ----------------QLIHSSEALALLLHLLST-------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG  448 (530)
Q Consensus       392 ----------------~~li~~~~l~~Li~lL~~-------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~  448 (530)
                                      .... ..++|.+...+..       .+..++..|..++..++...    +.     +...    
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~----~~-----~~~~----  364 (458)
T d1ibrb_         299 AAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-----DIVP----  364 (458)
T ss_dssp             TTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----TT-----THHH----
T ss_pred             HHHhhhHHHHHHHHHHHHHH-HHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhc----cH-----hhhh----
Confidence                            1111 1234555555532       23458888888888887532    11     1122    


Q ss_pred             cCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 009647          449 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF  522 (530)
Q Consensus       449 ~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~f  522 (530)
                       .+++.+...+.++++.++..++.+|..+...+........+  ...++.|..+..++++.|+..|...+.++.
T Consensus       365 -~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         365 -HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             -HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             24566778888999999999999999887654321111111  235677878889999999999998887763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-11  Score=136.68  Aligned_cols=346  Identities=13%  Similarity=0.110  Sum_probs=214.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH-----hh
Q 009647          102 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK-----AL  176 (530)
Q Consensus       102 ~l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~-----~i  176 (530)
                      .+.++++..+..+...+..+.+......+     ..++|.|++.+.+++.. .+.-|..+|..|+........     ..
T Consensus        96 ~l~~~~~~vr~~~~~~i~~i~~~~~~~~W-----pell~~L~~~l~s~~~~-~~~~al~~L~~i~e~~~~~~~~~~~~~~  169 (888)
T d1qbkb_          96 NIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSEDYN-TCEGAFGALQKICEDSAEILDSDVLDRP  169 (888)
T ss_dssp             GGGCCCSSTTTTTTTTTHHHHTTTSSCSS-----TTTSTTTTTSSTGGGSS-CSSSSSTTTHHHHGGGHHHHHTC---CC
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhCccch-----HHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence            44455555555555555555442211111     24667777777654422 223367788888753322211     11


Q ss_pred             c-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCC
Q 009647          177 L-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK  255 (530)
Q Consensus       177 ~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~  255 (530)
                      . ..+|.+++.+.+ +++.++..|+.++..+....+..-...+ ...++.+..+..+++.+++..++.+|..+.... +.
T Consensus       170 ~~~ll~~ll~~~~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~  246 (888)
T d1qbkb_         170 LNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHI-DSFTENLFALAGDEEPEVRKNVCRALVMLLEVR-MD  246 (888)
T ss_dssp             STTTTHHHHTGGGS-SSSCSSSTTTHHHHGGGGCCCSTTCSHH-HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSC-TT
T ss_pred             HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh-HH
Confidence            2 378999999987 6788999999999988765443211111 236788888888888999999999999887643 22


Q ss_pred             chhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhc---C-------------
Q 009647          256 PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT---S-------------  319 (530)
Q Consensus       256 ~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~---~-------------  319 (530)
                      .....  ..++++.++..+.+++++++..|+..+..+++.. .... .. ...++.++..+..   .             
T Consensus       247 ~l~~~--l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~-~~~~-~~-~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~  321 (888)
T d1qbkb_         247 RLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKD-VL-VRHLPKLIPVLVNGMKYSDIDIILLKGDVE  321 (888)
T ss_dssp             TTTTT--TTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGG-GGTT-TT-TTSTTTTTTTTTTSSCCSSTTHHHHTTTSS
T ss_pred             HHHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-hhHH-HH-HHHHHHHHHHHHHHhhcchHHHHHHhhhhh
Confidence            11112  2466777777778889999999887776665321 0000 00 0111111111100   0             


Q ss_pred             -----------------------------------------------CCccchhhhHHHHhhhhcCCccccchhcccCCC
Q 009647          320 -----------------------------------------------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG  352 (530)
Q Consensus       320 -----------------------------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~  352 (530)
                                                                     ....++..+..+|..++......   ++     
T Consensus       322 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~---il-----  393 (888)
T d1qbkb_         322 EDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE---LL-----  393 (888)
T ss_dssp             CCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS---SH-----
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH---HH-----
Confidence                                                           01123334444554444322211   11     


Q ss_pred             cchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 009647          353 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG  432 (530)
Q Consensus       353 ~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~  432 (530)
                        .-+++.+...+.++++..|..|+.+++.++.+..+.....+. .++|.|+..+.++++.+|..|+|+|+.++....  
T Consensus       394 --~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~--  468 (888)
T d1qbkb_         394 --PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV--  468 (888)
T ss_dssp             --HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH--
T ss_pred             --HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh--
Confidence              236677777788889999999999999999887665544333 378899999999999999999999999874210  


Q ss_pred             CCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCC
Q 009647          433 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP  482 (530)
Q Consensus       433 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~  482 (530)
                       ..+       ..-.-..+++.++..+.+.++.+...++.+|..++....
T Consensus       469 -~~~-------~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~  510 (888)
T d1qbkb_         469 -SQP-------PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  510 (888)
T ss_dssp             -SSC-------HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             -hhh-------hhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence             000       111124678888988989999999999999999987544

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6e-09  Score=104.44  Aligned_cols=278  Identities=12%  Similarity=0.070  Sum_probs=179.5

Q ss_pred             CCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCCh-hhHHhhc-CCcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCch
Q 009647          137 GAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEE  212 (530)
Q Consensus       137 g~v~~Lv~lL~~~~~~-~~~~eA~~~L~nia~~~~-~~~~~i~-~~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~  212 (530)
                      +.++.+++.+.++..+ ..+..++.++..++.... ....... ..++.++..+.+. .+.+++..|+++++++......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            5688888888765443 333447888888774322 2222222 4678888888653 4678999999999999864332


Q ss_pred             hH-HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHH
Q 009647          213 FR-NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY  291 (530)
Q Consensus       213 ~r-~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  291 (530)
                      .- .........+.+..++.+++++++..++++|..++... +......+ .....+.+...+.+.+++++..++..+..
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~-~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-YQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-GGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHh-HHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            21 12222335666777788889999999999999998643 22111121 22344555666778888999999988888


Q ss_pred             hhcCCchhH--------------------HHHHhcCchHHHHHHHhc------CCCccchhhhHHHHhhhhcCCccccch
Q 009647          292 LSALSNVAT--------------------SLLVKSGVLQLLVERLAT------SNSLQLLIPVLRSLGNLVAGDSSTISD  345 (530)
Q Consensus       292 L~~~~~~~~--------------------~~i~~~g~l~~Lv~lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~  345 (530)
                      ++.......                    .......+++.+...+..      ..+..++..|..+++.++......   
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---  361 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  361 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---
Confidence            864211100                    000011223334443321      122345667777888777543322   


Q ss_pred             hcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHH
Q 009647          346 VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGN  424 (530)
Q Consensus       346 ~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~n  424 (530)
                      ++       ..+++.+.+.+.++++.+|..|+.+++.++.+. ...+...+ ..++|.++..++++++.||..|+|+|+.
T Consensus       362 ~~-------~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~  433 (458)
T d1ibrb_         362 IV-------PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR  433 (458)
T ss_dssp             HH-------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             hh-------hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            22       247788888899999999999999999998653 22222222 3578999999999999999999999999


Q ss_pred             hcC
Q 009647          425 LCV  427 (530)
Q Consensus       425 l~~  427 (530)
                      ++.
T Consensus       434 i~~  436 (458)
T d1ibrb_         434 ICE  436 (458)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.3e-07  Score=105.03  Aligned_cols=354  Identities=12%  Similarity=0.109  Sum_probs=219.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCC----CCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhh
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRFE----FPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL  176 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~~----~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i  176 (530)
                      ..+.+++...+-.+..+|+.++..-.    .......+-..+++.+...+.......++.+|..+|..+.+.........
T Consensus        90 ~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~  169 (1207)
T d1u6gc_          90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF  169 (1207)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred             HHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH
Confidence            44557777777777788877765321    11222223344566666666666667777889999988874322111111


Q ss_pred             c-CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcC-CCChhHHHHHHHHHHHhhcCCCC
Q 009647          177 L-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDP  254 (530)
Q Consensus       177 ~-~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~  254 (530)
                      . ..++.|+..|.+ +++.||..|+.+|+.++...+.   .. -...++.++..+. +.+...++.++.+++.+++.. +
T Consensus       170 ~~~il~~l~~~l~~-~~~~vR~~A~~~l~~l~~~~~~---~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~-~  243 (1207)
T d1u6gc_         170 HPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-G  243 (1207)
T ss_dssp             HHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-S
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc-c
Confidence            1 367778888887 7889999999999999864332   11 1234566665554 445667778888999998753 2


Q ss_pred             CchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHH------------------
Q 009647          255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL------------------  316 (530)
Q Consensus       255 ~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL------------------  316 (530)
                      ......  ...++|.++..+..++++++..++.++..++...+....... ..+++.+...+                  
T Consensus       244 ~~~~~~--l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~  320 (1207)
T d1u6gc_         244 HRIGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAM  320 (1207)
T ss_dssp             GGGTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC---------------
T ss_pred             hhhHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhh
Confidence            221222  357899999999999999999999988888764322111100 00111110000                  


Q ss_pred             ------------------hcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHH
Q 009647          317 ------------------ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW  378 (530)
Q Consensus       317 ------------------~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~  378 (530)
                                        ....+..++..++.+|+.++...+........       .++|.|+..+.+.++.+|..+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-------~~~~~L~~~l~d~~~~vr~~~~~  393 (1207)
T d1u6gc_         321 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-------TVSPALISRFKEREENVKADVFH  393 (1207)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-------TTHHHHHSTTSCSSSHHHHHHHH
T ss_pred             hhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHhcCCchHHHHHHHH
Confidence                              01234466788999999998776655444442       58899999999888999999999


Q ss_pred             HHHHHhcCCHH----------------HHHHHH--hCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 009647          379 VLSNIAAGSVE----------------HKQLIH--SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ  440 (530)
Q Consensus       379 ~Lsnl~~~~~~----------------~~~~li--~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~  440 (530)
                      ++..+......                ....+.  -..+++.+...+.+.+..++..+..++..++....   +.-   .
T Consensus       394 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~---~~l---~  467 (1207)
T d1u6gc_         394 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP---GAL---T  467 (1207)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST---TTT---G
T ss_pred             HHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcc---hHH---H
Confidence            88877531100                001111  12366777788888999999999999998875321   110   1


Q ss_pred             HHHHHHHhcCChHHHHhhhcc--CCHHHHHHHHHHHHHHHccC
Q 009647          441 EHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGM  481 (530)
Q Consensus       441 ~~~~~l~~~g~i~~L~~lL~~--~d~~i~~~~L~~L~~il~~~  481 (530)
                      ++...     +++.++..+..  ....+...++.++..++...
T Consensus       468 ~~l~~-----~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~  505 (1207)
T d1u6gc_         468 QHIPV-----LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH  505 (1207)
T ss_dssp             GGHHH-----HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HhhHh-----hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc
Confidence            12222     34566666654  34566777888888887643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=3.6e-07  Score=98.71  Aligned_cols=348  Identities=11%  Similarity=0.064  Sum_probs=206.2

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHcCCC-CCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHHhhc-
Q 009647          100 VAYHGKGAMQKRVNALRELRRLLSRFE-FPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-  177 (530)
Q Consensus       100 l~~l~s~d~~~~~~a~~~lr~lls~~~-~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~~i~-  177 (530)
                      ++.+.++++..+..+...+..+...+- ...+     ..++|.|++.+.++++...+..|+.+|..++.........+. 
T Consensus       101 l~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w-----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~  175 (861)
T d2bpta1         101 LTALVSIEPRIANAAAQLIAAIADIELPHGAW-----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS  175 (861)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC-----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch-----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345568888888888888887754311 0011     125677778887766555555588899998744332222222 


Q ss_pred             ---CCcHHHHHhhcC-CCCHHHHHHHHHHHHhhcCCCchhH-HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          178 ---PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFR-NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       178 ---~~v~~L~~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r-~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                         ..++.++..+.+ ..+..++..|+.+++++....+..- .......+++.+...+++++++++..+..++..++...
T Consensus       176 ~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~  255 (861)
T d2bpta1         176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY  255 (861)
T ss_dssp             GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence               244455554433 3568999999999999876433211 11122335667778888999999999999999998642


Q ss_pred             CCCchhhHHHhhchHHH-HHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHH----------------hcCchHHHHHH
Q 009647          253 DPKPATELIKVDGLLDA-ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV----------------KSGVLQLLVER  315 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~-L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~----------------~~g~l~~Lv~l  315 (530)
                       ++.....+  ...+.. +.....+.+++++..++..+..++...........                -..+++.+...
T Consensus       256 -~~~~~~~l--~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~  332 (861)
T d2bpta1         256 -YTFMKPYM--EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL  332 (861)
T ss_dssp             -GGGCHHHH--HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             11111111  122333 33455577888888888877777642111111110                01233444444


Q ss_pred             HhcC------CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCH-
Q 009647          316 LATS------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV-  388 (530)
Q Consensus       316 L~~~------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~-  388 (530)
                      +...      .+......+..++..++......   ++       .-.++.+...+.+.+...+..|+.+++.++.+.. 
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~  402 (861)
T d2bpta1         333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-------EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK  402 (861)
T ss_dssp             TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred             HHHhhccccchhHHHHHHHHHHHHHHHhhcchh---hh-------hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcch
Confidence            4311      11234445566666655433221   11       1245566667788888999999999999987643 


Q ss_pred             HHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHH----HHhhhccCCH
Q 009647          389 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG----FIDLVRSADI  464 (530)
Q Consensus       389 ~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~----L~~lL~~~d~  464 (530)
                      ......++ .+++.++..+.++++.++..|+|+++.++...             ...+.....++.    +...+ ..++
T Consensus       403 ~~~~~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-------------~~~~~~~~~~~~ll~~l~~~~-~~~~  467 (861)
T d2bpta1         403 VQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSV-------------AESIDPQQHLPGVVQACLIGL-QDHP  467 (861)
T ss_dssp             HHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-------------GGGSCTTTTHHHHHHHHHHHH-TSCH
T ss_pred             hhHHHHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHh-------------chhhhhHHhhhhhhHHHHhcc-ccCh
Confidence            33333333 37899999999999999999999999986421             001111222233    33333 3466


Q ss_pred             HHHHHHHHHHHHHHcc
Q 009647          465 EAARLGLQFMELVLRG  480 (530)
Q Consensus       465 ~i~~~~L~~L~~il~~  480 (530)
                      .+...+..++..++..
T Consensus       468 ~~~~~~~~~~~~l~~~  483 (861)
T d2bpta1         468 KVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777766653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.2e-06  Score=94.41  Aligned_cols=389  Identities=11%  Similarity=0.085  Sum_probs=231.6

Q ss_pred             HHHHHHHHh-cCCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChh
Q 009647           94 EELKSAVAY-HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQE  171 (530)
Q Consensus        94 ~~l~~~l~~-l~s~d~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~eA~~~L~nia~~~~~  171 (530)
                      +++.+.+.. +.++|++.+.+|-..|.++...  ++       .+.++.|.+.+.+.+ +...+.-|+-.|.|.......
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~   74 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSND--NF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS   74 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--Cc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccc
Confidence            455555543 4589999999999999887432  11       235677888887544 345555688888887754322


Q ss_pred             hHHh--------hc------CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCC-CchhHHHHHhcCChhhhHhhcCCC-Ch
Q 009647          172 ETKA--------LL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQGALPPLARMMLPN-KG  235 (530)
Q Consensus       172 ~~~~--------i~------~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~g~i~~L~~lL~~~-~~  235 (530)
                      ....        .+      ..-..++..|.+ +++.++..++.+++.|+.. .+..+.    ...++.|+..+.++ +.
T Consensus        75 ~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~  149 (861)
T d2bpta1          75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPE  149 (861)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCH
T ss_pred             hhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcH
Confidence            1110        01      023456677776 6899999999999998742 111000    02456677777665 45


Q ss_pred             hHHHHHHHHHHHhhcCCCCCchhhHH-HhhchHHHHHHHhc--cCCHHHHHHHHHHHHHhhcCCchhHH-HHHhcCchHH
Q 009647          236 STVRTAAWALSNLIKGPDPKPATELI-KVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQL  311 (530)
Q Consensus       236 ~~~~~a~~~L~nL~~~~~~~~~~~~v-~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~l~~  311 (530)
                      .++..++.+|..+|....+.. .... .....++.++..+.  ..+..++..++.++.++...-..... ......+++.
T Consensus       150 ~~~~~al~~l~~i~e~~~~~~-~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (861)
T d2bpta1         150 NVKRASLLALGYMCESADPQS-QALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV  228 (861)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTS-STTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence            677888999999986533221 1111 11244555555554  34578999999999988764332211 1112234566


Q ss_pred             HHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHH-HHHHhccCcHhHHHHHHHHHHHHhcCCHHH
Q 009647          312 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV-LVKCLKSEHRVLKKEAAWVLSNIAAGSVEH  390 (530)
Q Consensus       312 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~-L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~  390 (530)
                      +...+ .+++++++..++.++..++..........+.       ..+.. +.....+.++.++..++..+..++......
T Consensus       229 l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-------~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~  300 (861)
T d2bpta1         229 VCEAT-QAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-------QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI  300 (861)
T ss_dssp             HHHHH-TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-------HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            66766 5788899999999999998654433322221       23333 344556778899999998888775432111


Q ss_pred             HHHHHh----------------CCcHHHHHHHhcCC-------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 009647          391 KQLIHS----------------SEALALLLHLLSTS-------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV  447 (530)
Q Consensus       391 ~~~li~----------------~~~l~~Li~lL~~~-------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~  447 (530)
                      ......                ..++|.+...+...       +...+..+..++..++...      +.   +....  
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~---~~~~~--  369 (861)
T d2bpta1         301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC------GN---HILEP--  369 (861)
T ss_dssp             HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH------GG---GGHHH--
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhc------ch---hhhhh--
Confidence            111110                12456666666432       2346777777777665421      00   00111  


Q ss_pred             hcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          448 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       448 ~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                         .++.+...+.+.++.....++.++..+............+  ...++.+..+..++++.++..|...+.++
T Consensus       370 ---~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         370 ---VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             ---HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ---hcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence               1234455667788888888888888876543211111111  23466777778889999999988777655

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.3e-06  Score=94.54  Aligned_cols=392  Identities=12%  Similarity=0.114  Sum_probs=230.1

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCc----------HHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009647          105 KGAMQKRVNALRELRRLLSRFEFPP----------IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK  174 (530)
Q Consensus       105 s~d~~~~~~a~~~lr~lls~~~~~~----------~~~ii~~g~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~~~~~~  174 (530)
                      +.+...|..|+..|++.+.......          +..-....+...++..|.+++.  .+..++.++..++..... ..
T Consensus        48 ~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~--~~~~~a~~i~~i~~~~~p-~~  124 (876)
T d1qgra_          48 GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY--RPSSASQCVAGIACAEIP-VN  124 (876)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS--SSCHHHHHHHHHHHHHGG-GT
T ss_pred             CCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHCC-cc
Confidence            4567889999999999886432110          0011233455677788876543  334577888888743110 01


Q ss_pred             hhcCCcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCC--ChhHHHHHHHHHHHhhcC
Q 009647          175 ALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKG  251 (530)
Q Consensus       175 ~i~~~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~  251 (530)
                      ..-+.+|.+++.+.++ ....+++.++.+|+.++.+...-...-....+++.++..+.++  +..++..++.++.++...
T Consensus       125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~  204 (876)
T d1qgra_         125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence            1124688888888653 3467899999999999853221111111123567777777643  568889999999887754


Q ss_pred             CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHH
Q 009647          252 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS  331 (530)
Q Consensus       252 ~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~  331 (530)
                      ..+....... ..-+++.+...+.+++++++..++.+|..+.....+.....+...+.+.+...+ .+....+...++..
T Consensus       205 ~~~~~~~~~~-~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~  282 (876)
T d1qgra_         205 TKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEF  282 (876)
T ss_dssp             CHHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHH
T ss_pred             hhhhhhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHH
Confidence            2111111111 234566677778889999999999999999875555444433444444555555 46666777777777


Q ss_pred             HhhhhcCCcccc-----------------chhcccCCCcchhhHHHHHHHhccC-------cHhHHHHHHHHHHHHhcCC
Q 009647          332 LGNLVAGDSSTI-----------------SDVLVPGHGITDQVIAVLVKCLKSE-------HRVLKKEAAWVLSNIAAGS  387 (530)
Q Consensus       332 L~nl~~~~~~~~-----------------~~~i~~g~~~~~~~l~~L~~lL~~~-------~~~i~~~A~~~Lsnl~~~~  387 (530)
                      +..++.......                 ..+..   .....+++.+...+...       ...++..|..++..++...
T Consensus       283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~  359 (876)
T d1qgra_         283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK---GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH---HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHH---HHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Confidence            776653211100                 00000   00123455555555332       2357888888887776432


Q ss_pred             HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647          388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  467 (530)
Q Consensus       388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~  467 (530)
                      ...   +++ -+++.+...+.+++...+..++++++.+..+..     +    ..... .-..+++.++..+.++++.+.
T Consensus       360 ~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~-----~----~~~~~-~~~~~~~~l~~~l~d~~~~vr  425 (876)
T d1qgra_         360 EDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----P----SQLKP-LVIQAMPTLIELMKDPSVVVR  425 (876)
T ss_dssp             GGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----H----HHHHH-HHHHHHHHHHHHHTCSSHHHH
T ss_pred             hhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhh-----H----HHHHH-HHHHHHHHHHHhhcCCccHHH
Confidence            221   111 134556666788888999999999999876431     1    22221 123467888999999999999


Q ss_pred             HHHHHHHHHHHccCCCCcc-hhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          468 RLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       468 ~~~L~~L~~il~~~~~~~~-~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                      ..++.++..++...+.... ...+.  ..++.+.... ++++.+...+...+..+
T Consensus       426 ~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~l-~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         426 DTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGL-SAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcchhhhhHHHhh--hHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            9999999998865432111 11111  1122232222 34677777776555443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.2e-06  Score=91.30  Aligned_cols=350  Identities=12%  Similarity=0.043  Sum_probs=205.4

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCC-hhhHHhhc
Q 009647          101 AYHGKGAMQKRVNALRELRRLLSRF-EFPPIETALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGK-QEETKALL  177 (530)
Q Consensus       101 ~~l~s~d~~~~~~a~~~lr~lls~~-~~~~~~~ii~~g~v~~Lv~lL~~~~~~-~~~~eA~~~L~nia~~~-~~~~~~i~  177 (530)
                      +.+.+++. .+..++..+.++...+ +...+     .+++|.|++.+.+++.. ..+..++.+|..++..- ++......
T Consensus        97 ~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W-----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~  170 (876)
T d1qgra_          97 HTLGTETY-RPSSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS  170 (876)
T ss_dssp             HHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred             HHhcCCcH-HHHHHHHHHHHHHHHHCCcccc-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            34445543 4445556666554321 00001     35788899988765543 34444788888887432 22222222


Q ss_pred             -CCcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhH-HHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 009647          178 -PALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFR-NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP  254 (530)
Q Consensus       178 -~~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r-~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~  254 (530)
                       ..++.++..+.+. ++.+++..|+.++.+........- ......-+++.+...++++++.++..++.+|..++... +
T Consensus       171 ~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~-~  249 (876)
T d1qgra_         171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-Y  249 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-H
Confidence             4678888888652 457899999999988775332111 01111224566777778889999999999999998643 2


Q ss_pred             CchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHH--------------------HHHhcCchHHHHH
Q 009647          255 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS--------------------LLVKSGVLQLLVE  314 (530)
Q Consensus       255 ~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~--------------------~i~~~g~l~~Lv~  314 (530)
                      ......+ ...+.+.+...+.+.++++...++..+..++........                    ......+++.+..
T Consensus       250 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  328 (876)
T d1qgra_         250 QYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (876)
T ss_dssp             GGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence            2222222 234556666777788888888877776666642111100                    0011122333333


Q ss_pred             HHhc------CCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC-
Q 009647          315 RLAT------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-  387 (530)
Q Consensus       315 lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~-  387 (530)
                      .+..      ..+..++..|..++..++......   ++       ..+++.+...+.+.+...+..++++++.+..+. 
T Consensus       329 ~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-------~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~  398 (876)
T d1qgra_         329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-------PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE  398 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hh-------hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhh
Confidence            3321      112235556666676666433221   22       136677777788888999999999999998763 


Q ss_pred             HHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHH
Q 009647          388 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA  467 (530)
Q Consensus       388 ~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~  467 (530)
                      .......+. .+++.++..+.++++.++..|+|+++.++.........+    .+..     .+++.+...+. .++.+.
T Consensus       399 ~~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~-----~~~~~l~~~l~-~~~~v~  467 (876)
T d1qgra_         399 PSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND----VYLA-----PLLQCLIEGLS-AEPRVA  467 (876)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST----TTHH-----HHHHHHHHHTT-SCHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhH----HHhh-----hHHHHHHHHhc-CCHHHH
Confidence            344444333 378899999999999999999999999875310000000    0011     12344444443 467777


Q ss_pred             HHHHHHHHHHHc
Q 009647          468 RLGLQFMELVLR  479 (530)
Q Consensus       468 ~~~L~~L~~il~  479 (530)
                      ..+..++.++..
T Consensus       468 ~~~~~~l~~l~~  479 (876)
T d1qgra_         468 SNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.8e-05  Score=77.60  Aligned_cols=329  Identities=11%  Similarity=0.070  Sum_probs=195.2

Q ss_pred             CcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHH---HHHhcC--ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 009647          179 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN---VLLSQG--ALPPLARMMLPNKGSTVRTAAWALSNLIKGPD  253 (530)
Q Consensus       179 ~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~---~~~~~g--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~  253 (530)
                      ++..++.+|+..+.+++....+-.+.-+..+.+....   ......  .-+++..++..++.-....+...++.++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            5777888887767788888887777777765442211   111211  22345556666666666677777777775432


Q ss_pred             CCchhhHHH-hhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHH--hcCchHHHHHHHhc---C--------
Q 009647          254 PKPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV--KSGVLQLLVERLAT---S--------  319 (530)
Q Consensus       254 ~~~~~~~v~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~--~~g~l~~Lv~lL~~---~--------  319 (530)
                       .. .+... .......+-.+....+.+...-++.++..+.. .+++...+.  +...++.++..|..   +        
T Consensus       155 -~~-~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         155 -HN-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             -CC-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             -cc-cchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence             21 22111 11222233334456778888888889998887 455555553  33455666665531   1        


Q ss_pred             -----CCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc-cCcHhHHHHHHHHHHHHhcCCH-----
Q 009647          320 -----NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSV-----  388 (530)
Q Consensus       320 -----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~-~~~~~i~~~A~~~Lsnl~~~~~-----  388 (530)
                           .+.+++-.++-|+--++... .....+...    ..+.++.|+.++. +....|.+-++.++.|+.....     
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~----~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~  306 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQK----YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  306 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTT----SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHh----hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence                 12244556677776666433 333333321    1246888888885 4567889999999999986421     


Q ss_pred             HHHHHHHhCCcHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH----------------HHh--
Q 009647          389 EHKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS----------------LVG--  448 (530)
Q Consensus       389 ~~~~~li~~~~l~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~----------------l~~--  448 (530)
                      .....++..++++.+-.+..  -.|+++....- .|..........-.+.   .++...                +..  
T Consensus       307 ~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsf---d~Y~~Ev~Sg~L~WSP~H~se~FW~EN  382 (477)
T d1ho8a_         307 VIKQLLLLGNALPTVQSLSERKYSDEELRQDIS-NLKEILENEYQELTSF---DEYVAELDSKLLCWSPPHVDNGFWSDN  382 (477)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHH---HHHHHHHHHTCCCCCGGGGCHHHHHHH
T ss_pred             HHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcH---HHHHHHHhcCCCCCCCCcCChhHHHHH
Confidence            12334556666655444432  35666543322 2222111000000000   111111                211  


Q ss_pred             --------cCChHHHHhhhc----------cCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHH
Q 009647          449 --------RGCLSGFIDLVR----------SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL  510 (530)
Q Consensus       449 --------~g~i~~L~~lL~----------~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i  510 (530)
                              ..++..|+++|+          +.|+.+..+|+.=|..+++..|.  ++..+++.||=+.+-+|..|+|++|
T Consensus       383 ~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~--gr~il~~lg~K~~vM~Lm~h~d~~V  460 (477)
T d1ho8a_         383 IDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRV  460 (477)
T ss_dssp             SGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHH
T ss_pred             HHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHH
Confidence                    145889999996          35777888888888888888775  6788999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 009647          511 RNMANGLVDKY  521 (530)
Q Consensus       511 ~~~A~~il~~~  521 (530)
                      +..|..-++++
T Consensus       461 r~eAL~avQkl  471 (477)
T d1ho8a_         461 KYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998777765

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.4e-05  Score=78.46  Aligned_cols=322  Identities=14%  Similarity=0.119  Sum_probs=193.6

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHH-HcC--CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 009647           94 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP-PIETAL-KAG--AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK  169 (530)
Q Consensus        94 ~~l~~~l~~l~s~d~~~~~~a~~~lr~lls~~~~~-~~~~ii-~~g--~v~~Lv~lL~~~~~~~~~~eA~~~L~nia~~~  169 (530)
                      ..+..++.  ....++.....+.-+-.+|...+.. ...... +..  ..+.+..+|..++ .-.+..+...++.+++..
T Consensus        77 ~~~l~lL~--~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          77 IPLIHLLS--TSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             HHHHHHHH--SCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHh--hcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHhcc
Confidence            34444444  2344555555566666666543211 111111 112  2244555555433 223334666777777654


Q ss_pred             hhhH---HhhcCCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchhHHHHHh--cCChhhhHhhcCC------------
Q 009647          170 QEET---KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS--QGALPPLARMMLP------------  232 (530)
Q Consensus       170 ~~~~---~~i~~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~--~g~i~~L~~lL~~------------  232 (530)
                      ....   +..... ..++..|....+.+.+..|+.++..+.. .+++|..+..  ...+++|+..|..            
T Consensus       154 ~~~~~~~e~l~~~-~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         154 LHNVKLVEKLLKN-NNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             TCCHHHHHHHHHC-HHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             ccccchHHHHHHh-hHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence            3221   121122 3334444444778889999999999987 6889988754  3456666666642            


Q ss_pred             -----CChhHHHHHHHHHHHhhcCCCCCchhhHHHhh--chHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCch-----h
Q 009647          233 -----NKGSTVRTAAWALSNLIKGPDPKPATELIKVD--GLLDAILRHLK-RADEELTTEVAWVVVYLSALSNV-----A  299 (530)
Q Consensus       233 -----~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~--~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~-----~  299 (530)
                           ....++..++.|++-|+..  +....++. ..  +.++.++.++. +..+.+..-++.+|.|+......     .
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~-~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  308 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTFN--PVFANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  308 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTS--HHHHHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcC--HHHHHHHH-HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence                 1246678888888888854  23333332 22  45888888886 45678888999999999874322     2


Q ss_pred             HHHHHhcCchHHHHHHHhcC--CCccchhhhHHHHhhhhcCCc-------cccchhcccCCC------------------
Q 009647          300 TSLLVKSGVLQLLVERLATS--NSLQLLIPVLRSLGNLVAGDS-------STISDVLVPGHG------------------  352 (530)
Q Consensus       300 ~~~i~~~g~l~~Lv~lL~~~--~~~~v~~~al~~L~nl~~~~~-------~~~~~~i~~g~~------------------  352 (530)
                      ...++..++++.+ ..|...  .|+++ ...+..|..+....-       ..... +++|+.                  
T Consensus       309 ~~~~v~~~~l~~l-~~L~~r~~~Dedl-~edl~~L~~~L~~~~k~lTsfd~Y~~E-v~Sg~L~WSP~H~se~FW~EN~~k  385 (477)
T d1ho8a_         309 KQLLLLGNALPTV-QSLSERKYSDEEL-RQDISNLKEILENEYQELTSFDEYVAE-LDSKLLCWSPPHVDNGFWSDNIDE  385 (477)
T ss_dssp             HHHHHHHCHHHHH-HHHHSSCCSSHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHH-HHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred             HHHHHHcchhHHH-HHHhcCCCCCHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHH-HhcCCCCCCCCcCChhHHHHHHHh
Confidence            3345555666554 445322  34443 333444443332110       00000 111110                  


Q ss_pred             ---cchhhHHHHHHHhc----------cCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHH
Q 009647          353 ---ITDQVIAVLVKCLK----------SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA  419 (530)
Q Consensus       353 ---~~~~~l~~L~~lL~----------~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~  419 (530)
                         -+..++..|+.+|.          +.++.+..-||.=|+.++...|.....+-+.|+=..+++++.+++++|+.+|+
T Consensus       386 f~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL  465 (477)
T d1ho8a_         386 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL  465 (477)
T ss_dssp             GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence               13467899999996          34778899999999999999888888887888888899999999999999999


Q ss_pred             HHHHHhc
Q 009647          420 YVLGNLC  426 (530)
Q Consensus       420 ~aL~nl~  426 (530)
                      .|+.-+.
T Consensus       466 ~avQklm  472 (477)
T d1ho8a_         466 KATQAII  472 (477)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987664

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.39  E-value=1.2e-07  Score=75.81  Aligned_cols=108  Identities=18%  Similarity=0.257  Sum_probs=88.0

Q ss_pred             cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 009647          318 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS  397 (530)
Q Consensus       318 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~  397 (530)
                      .+.++.++..|+++|+.+.  +                ..++.|+..|.++++.+|..|+++|+++..  +         
T Consensus         2 ~D~~~~VR~~A~~aL~~~~--~----------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------   52 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG--D----------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------   52 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS--S----------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------
T ss_pred             CCcCHHHHHHHHHHHHHhC--H----------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------
Confidence            3678889999999998752  1                256788999999999999999999998732  2         


Q ss_pred             CcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCChHHHHhhhccCCHHHHHHHHHHHH
Q 009647          398 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME  475 (530)
Q Consensus       398 ~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~  475 (530)
                      +.+|.|+.+|.+.++.||..|+++|+.+..        +             +.++.|..+++.+++.++..++.+|.
T Consensus        53 ~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------~-------------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          53 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------E-------------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhHHHHHhhhccchhHHHHHHHHHHHHhCc--------c-------------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            257889999999999999999999998832        1             23577888999999999998888764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=3.3e-08  Score=79.29  Aligned_cols=111  Identities=20%  Similarity=0.252  Sum_probs=91.0

Q ss_pred             hccCcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 009647          365 LKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLV  444 (530)
Q Consensus       365 L~~~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~  444 (530)
                      |+++++.||..|+++|+.+.  .          ..++.|+..|.++++.+|..|+++|+++..        +        
T Consensus         1 L~D~~~~VR~~A~~aL~~~~--~----------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~--------   52 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG--D----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------E--------   52 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS--S----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H--------
T ss_pred             CCCcCHHHHHHHHHHHHHhC--H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------h--------
Confidence            45678889999999988652  1          257889999999999999999999998742        1        


Q ss_pred             HHHhcCChHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHHhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 009647          445 SLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY  521 (530)
Q Consensus       445 ~l~~~g~i~~L~~lL~~~d~~i~~~~L~~L~~il~~~~~~~~~~~i~~~ggl~~L~~L~~~~~~~i~~~A~~il~~~  521 (530)
                           +.++.|..+|.++++.++..++++|..+-             ....++.|..+..++++.|++.|...|++|
T Consensus        53 -----~~~~~L~~~l~d~~~~VR~~a~~aL~~i~-------------~~~~~~~L~~ll~d~~~~vr~~A~~aL~th  111 (111)
T d1te4a_          53 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIG-------------GERVRAAMEKLAETGTGFARKVAVNYLETH  111 (111)
T ss_dssp             -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----hhHHHHHhhhccchhHHHHHHHHHHHHhC-------------ccchHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence                 13578899999999999999999998761             134567788899999999999999999876

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.019  Score=52.37  Aligned_cols=207  Identities=16%  Similarity=0.181  Sum_probs=150.3

Q ss_pred             HHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccCCHHHHHHHHHHHHHh
Q 009647          216 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVYL  292 (530)
Q Consensus       216 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~v~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L  292 (530)
                      .+...+.+..|+..|..=+-+.+..++-+++++.+....  .|..+.+. ...++..|++..  +++++...+-..|..+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHH
Confidence            445567788888888888899999999999999986422  22223332 233444444443  3566777776777777


Q ss_pred             hcCCchhHHHHHhcCchHHHHHHHhcCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccCcHhH
Q 009647          293 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL  372 (530)
Q Consensus       293 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i  372 (530)
                      .. .+.-...++....+..+.+++ ..++-++...|..++..+.+.........+..-   -..++..+..+|.+++.-+
T Consensus       142 ik-~e~lak~iL~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~N---yd~Ff~~~~~LL~s~NYVt  216 (330)
T d1upka_         142 IR-HEPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH---YDRFFSEYEKLLHSENYVT  216 (330)
T ss_dssp             HT-SHHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHTTCSSHHH
T ss_pred             Hh-hHHHHHHHHccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHh---HHHHHHHHHHHhcCCchHH
Confidence            76 566677788888888999988 588899999999999999887755444444210   1347777889999999999


Q ss_pred             HHHHHHHHHHHhcCC--HHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 009647          373 KKEAAWVLSNIAAGS--VEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP  429 (530)
Q Consensus       373 ~~~A~~~Lsnl~~~~--~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~  429 (530)
                      |+.+...|+.+....  .......++ ..-+..++.+|++.+..+|-+|-.+.--++.++
T Consensus       217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            999999999997542  222222333 345888999999999999999999998888765

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.039  Score=59.09  Aligned_cols=221  Identities=10%  Similarity=0.054  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCch-------------hHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCch
Q 009647          191 SSSPVAEQCAWALGNVAGEGEE-------------FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA  257 (530)
Q Consensus       191 ~~~~v~~~a~~~L~nla~d~~~-------------~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~  257 (530)
                      .+...++.++.+++.++..+..             ..+.+. . .+.+.+.....+..-++..++|+++..+....    
T Consensus       417 ~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~-~-~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~----  490 (959)
T d1wa5c_         417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT-K-EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----  490 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH-H-HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHH-H-HHHHHHccCCCchHHHHHHHHHHHHHHHhhcc----
Confidence            4677888898888887642211             111111 0 11111222223456788999999999986532    


Q ss_pred             hhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhH--------HHHH--hcCchHHHHHHHhcCCCc----c
Q 009647          258 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT--------SLLV--KSGVLQLLVERLATSNSL----Q  323 (530)
Q Consensus       258 ~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~--------~~i~--~~g~l~~Lv~lL~~~~~~----~  323 (530)
                      .+.  ...+++.++.+|.+++..++..|++++..++.......        ..+.  -..++..++..+......    .
T Consensus       491 ~~~--~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~  568 (959)
T d1wa5c_         491 KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (959)
T ss_dssp             HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HHH--HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHH
Confidence            222  34789999999999999999999999999986322110        0000  012344455555322221    1


Q ss_pred             chhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhc----c-CcHhHHHHHHHHHHHHhcC-CHHHHHHHHhC
Q 009647          324 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----S-EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSS  397 (530)
Q Consensus       324 v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~----~-~~~~i~~~A~~~Lsnl~~~-~~~~~~~li~~  397 (530)
                      ....++.+++.++....+......       ..+++.|..++.    + .++.....+..+++.+... +++....+ ..
T Consensus       569 ~~~~ll~~l~~ii~~~~~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~  640 (959)
T d1wa5c_         569 ENEFLMRSIFRVLQTSEDSIQPLF-------PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VD  640 (959)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGH-------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HH
Confidence            223477777777644333333222       235566655542    2 2345666677778777643 33333333 33


Q ss_pred             CcHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 009647          398 EALALLLHLLSTSPFDIKKEVAYVLGNLCV  427 (530)
Q Consensus       398 ~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~  427 (530)
                      .++|.+...++....+....+...+..+..
T Consensus       641 ~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         641 SMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            478888888877666666667666665554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.25  E-value=0.074  Score=49.76  Aligned_cols=200  Identities=17%  Similarity=0.161  Sum_probs=114.6

Q ss_pred             ChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CCHHHHHHHHHHHHHhhcC--
Q 009647          222 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSAL--  295 (530)
Q Consensus       222 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~v~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~--  295 (530)
                      ++..+..++.+....-.+.+.|.. .+....  .|..      ..+..+..++.+    .++.+...+.-+++.+...  
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~-~l~~~~--~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVA-STLSNQ--QATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHH-HHHHTC--CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHH-HHhccC--CCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            345566667666544444444443 344332  2323      334455566653    4666777777777766531  


Q ss_pred             -CchhHHHHHhcCchHHHHHHHh---cCCCccchhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhccC---
Q 009647          296 -SNVATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---  368 (530)
Q Consensus       296 -~~~~~~~i~~~g~l~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~~---  368 (530)
                       ....+    ...+++.+.+.+.   ...+.+-..-++++|||+-.  +               ..++.|..++...   
T Consensus       160 ~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------------~~i~~l~~~l~~~~~~  218 (336)
T d1lsha1         160 ANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------------NSIKKIQRFLPGQGKS  218 (336)
T ss_dssp             TTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------------GGHHHHHTTSTTSSSC
T ss_pred             cCCCCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------------hHHHHHHHHhcccccc
Confidence             11111    1223444444432   34455556678999999842  1               3677777777432   


Q ss_pred             ----cHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHH
Q 009647          369 ----HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEH  442 (530)
Q Consensus       369 ----~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~  442 (530)
                          ...+|..|.|++.+++...+..++        +.+..++.  ..++++|..|..+|...  ++.         ...
T Consensus       219 ~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~---------~~~  279 (336)
T d1lsha1         219 LDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPS---------VAL  279 (336)
T ss_dssp             CCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC---------HHH
T ss_pred             cccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc--CCC---------HHH
Confidence                458999999999999887665433        34555553  45678998888888663  111         122


Q ss_pred             HHHHHhcCChHHHHhhhcc-CCHHHHHHHHHHHHHHHc
Q 009647          443 LVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLR  479 (530)
Q Consensus       443 ~~~l~~~g~i~~L~~lL~~-~d~~i~~~~L~~L~~il~  479 (530)
                               +..+...+.. ++.++...+...|.++..
T Consensus       280 ---------l~~i~~~l~~E~~~QV~sfv~S~l~~la~  308 (336)
T d1lsha1         280 ---------VSMVAVRLRREPNLQVASFVYSQMRSLSR  308 (336)
T ss_dssp             ---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence                     2334444433 566776666666666653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.14  Score=54.57  Aligned_cols=183  Identities=9%  Similarity=0.115  Sum_probs=99.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHHHHHhhcCCCCCc------hhhHHH--
Q 009647          191 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP------ATELIK--  262 (530)
Q Consensus       191 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~------~~~~v~--  262 (530)
                      +..-++..++|+++..+....  ....  ..+++.++.+|++++..++..|+|++..++.......      ..+.+.  
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~  545 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS  545 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred             chHHHHHHHHHHHHHHHhhcc--HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhh
Confidence            457899999999999986432  2222  2468889999999999999999999999986422110      011110  


Q ss_pred             hhchHHHHHHHhccCCHH-----HHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHh---cC-CCccchhhhHHHHh
Q 009647          263 VDGLLDAILRHLKRADEE-----LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---TS-NSLQLLIPVLRSLG  333 (530)
Q Consensus       263 ~~~~l~~L~~lL~~~d~~-----v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~---~~-~~~~v~~~al~~L~  333 (530)
                      ....+..++..+......     ....+..++..+.....+...... ..+++.+...+.   +. .++.....++.+|+
T Consensus       546 l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~  624 (959)
T d1wa5c_         546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIG  624 (959)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            123344444444332211     112344444444321111111110 123344444332   11 23344556777888


Q ss_pred             hhhcCCccc-cchhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhc
Q 009647          334 NLVAGDSST-ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA  385 (530)
Q Consensus       334 nl~~~~~~~-~~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~  385 (530)
                      .+....... ...+.       ..++|.+...+..........+...++.+..
T Consensus       625 ~l~~~~~~~~~~~l~-------~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         625 AILNYTQRQNLPLLV-------DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHTSCGGGHHHHH-------HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCchhHHHHH-------HHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            776543222 22222       3578888888877666666677766666553

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.2  Score=46.72  Aligned_cols=144  Identities=14%  Similarity=0.162  Sum_probs=103.6

Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHHHh-CCcHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH--HHHHHHH
Q 009647          370 RVLKKEAAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI--QEHLVSL  446 (530)
Q Consensus       370 ~~i~~~A~~~Lsnl~~~~~~~~~~li~-~~~l~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~--~~~~~~l  446 (530)
                      .....++..||..|.... .....+++ .+.+..++..|.++.+.+++.|...|+.+|.-+.+.+|.+.-+  .++....
T Consensus        70 ~~~e~e~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSH-HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccH-HHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            457788999999997644 55555554 5789999999999999999999999999986432222321100  0122233


Q ss_pred             HhcCChHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCCcc----hhHHHHhchHHHHHHHhcCCcHHHHHHH
Q 009647          447 VGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMA  514 (530)
Q Consensus       447 ~~~g~i~~L~~lL~~~-d~~i~~~~L~~L~~il~~~~~~~~----~~~i~~~ggl~~L~~L~~~~~~~i~~~A  514 (530)
                      -+.+-..++++.|... +.+....++.++..|+...++-..    +..+..+|-.+.|+.|...+++++..+-
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence            4567789999988765 578888899999999877665332    3567788888899999999888776543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.26  E-value=0.0036  Score=55.71  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=17.0

Q ss_pred             ChhhhHhhcCCCChhHHHHHHHH
Q 009647          222 ALPPLARMMLPNKGSTVRTAAWA  244 (530)
Q Consensus       222 ~i~~L~~lL~~~~~~~~~~a~~~  244 (530)
                      .+..|..+++++++.|+..+++.
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHH
Confidence            45667778888888888877754

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=1.2  Score=40.26  Aligned_cols=236  Identities=13%  Similarity=0.135  Sum_probs=152.4

Q ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCCchh----HHHHHhc-CChhhhHhhcCCCChhHHHHHHHHHHHhhcCC
Q 009647          178 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF----RNVLLSQ-GALPPLARMMLPNKGSTVRTAAWALSNLIKGP  252 (530)
Q Consensus       178 ~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~~~~----r~~~~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~  252 (530)
                      +.+..|+..|.. -+.+-|..++.+++++-......    .+.+..+ .++..|++-..  ++++.-++.-.|.-.++..
T Consensus        69 d~l~~Li~~L~~-L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik~e  145 (330)
T d1upka_          69 GLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE  145 (330)
T ss_dssp             SHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH
T ss_pred             ChHHHHHHhCCC-CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHhhH
Confidence            356677777765 56788888888888887543322    2445543 23444444333  4556666666777777652


Q ss_pred             CCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcC---chHHHHHHHhcCCCccchhhhH
Q 009647          253 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG---VLQLLVERLATSNSLQLLIPVL  329 (530)
Q Consensus       253 ~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g---~l~~Lv~lL~~~~~~~v~~~al  329 (530)
                         ....++...+.+-.+...+..++=++..+|..++..+...+.......+..+   .+.....+| .+++--++..++
T Consensus       146 ---~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL-~s~NYVtrRqSl  221 (330)
T d1upka_         146 ---PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKRQSL  221 (330)
T ss_dssp             ---HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred             ---HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh-cCCchHHHHHHH
Confidence               2233455667777778888888899999999999988876655555554432   445556666 577777888999


Q ss_pred             HHHhhhhcCCcccc--chhcccCCCcchhhHHHHHHHhccCcHhHHHHHHHHHHHHhcCC--HHHHH-HHHhC--CcHHH
Q 009647          330 RSLGNLVAGDSSTI--SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQ-LIHSS--EALAL  402 (530)
Q Consensus       330 ~~L~nl~~~~~~~~--~~~i~~g~~~~~~~l~~L~~lL~~~~~~i~~~A~~~Lsnl~~~~--~~~~~-~li~~--~~l~~  402 (530)
                      ..||.+........  ...++     +..-+..++.+|.+....|+.+|..+.--+++..  +..+. .++..  .++..
T Consensus       222 KLLgelLldr~N~~vm~~Yvs-----~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~f  296 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYIS-----KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF  296 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhC-----CHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHH
Confidence            99999996654432  12333     3468999999999999999999999998887752  23343 34433  34444


Q ss_pred             HHHHhcC--CChhHHHHHHHHHHHh
Q 009647          403 LLHLLST--SPFDIKKEVAYVLGNL  425 (530)
Q Consensus       403 Li~lL~~--~~~~v~~eA~~aL~nl  425 (530)
                      |-+...+  .|.....|=...+..+
T Consensus       297 l~~f~~d~~~DeqF~~EK~~lI~~I  321 (330)
T d1upka_         297 LSKFQNDRTEDEQFNDEKTYLVKQI  321 (330)
T ss_dssp             HHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCchhhHHHHHHHHHHHH
Confidence            4444332  2444444544444444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.45  E-value=0.01  Score=52.60  Aligned_cols=107  Identities=15%  Similarity=0.105  Sum_probs=50.2

Q ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHH-----hhcCC-CchhHHHHHhcCChhhhHhhcCCCChhHHHHHHHH-----HHHh
Q 009647          180 LPLLIAHLGEKSSSPVAEQCAWALG-----NVAGE-GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWA-----LSNL  248 (530)
Q Consensus       180 v~~L~~lL~~~~~~~v~~~a~~~L~-----nla~d-~~~~r~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~-----L~nL  248 (530)
                      ++.|..++.+ +++.|+..|++.|+     .+..| +...|..+...-..+.|..++.+++..++..++..     |..+
T Consensus        68 ~~~L~~Ll~D-~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          68 VEALTPLIRD-SDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             GGGGGGGTTC-SSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGT
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHH
Confidence            3344455554 55666666655432     22222 22344444444345566666666666666665543     1112


Q ss_pred             hcCCCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHH
Q 009647          249 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV  288 (530)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~  288 (530)
                      ....++. .+..+......+.|..+++++++.|+..++..
T Consensus       147 ~~D~d~~-VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         147 MRDEDRQ-VRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TTCSCHH-HHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             hcCCCHH-HHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            2211111 11111112223445566667777777776654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.83  E-value=2.4  Score=38.84  Aligned_cols=204  Identities=17%  Similarity=0.126  Sum_probs=119.2

Q ss_pred             CcHHHHHhhcCC-CCHHHHHHHHHHHHhhcCCCchhHHHHHhcCChhhhHhhcCC----CChhHHHHHHHHHHHhhcC--
Q 009647          179 ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALSNLIKG--  251 (530)
Q Consensus       179 ~v~~L~~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nL~~~--  251 (530)
                      ++..+.+++.+. -...-....++.++....-+++         .+..+..++++    .++.+...+..++++|...  
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~~---------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQATRE---------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCHH---------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            455566666542 1233334455555544332212         23445555554    3677888888888876642  


Q ss_pred             -CCCCchhhHHHhhchHHHHHHHhccCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCchHHHHHHHhcC------CCccc
Q 009647          252 -PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS------NSLQL  324 (530)
Q Consensus       252 -~~~~~~~~~v~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~l~~Lv~lL~~~------~~~~v  324 (530)
                       ..+....++  ...+...+.+.....+.+-..-++.+|+|+-.  +         +.++.+..++.+.      .+..+
T Consensus       160 ~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~v  226 (336)
T d1lsha1         160 ANTVSCPDEL--LQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRV  226 (336)
T ss_dssp             TTCSSCCGGG--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHH
T ss_pred             cCCCCCcHHH--HHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHH
Confidence             112221222  12444455555667777778888999999863  3         2345555555321      13457


Q ss_pred             hhhhHHHHhhhhcCCccccchhcccCCCcchhhHHHHHHHhcc--CcHhHHHHHHHHHHHHhcCCHHHHHHHHhCCcHHH
Q 009647          325 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL  402 (530)
Q Consensus       325 ~~~al~~L~nl~~~~~~~~~~~i~~g~~~~~~~l~~L~~lL~~--~~~~i~~~A~~~Lsnl~~~~~~~~~~li~~~~l~~  402 (530)
                      +..|+++|.++....+..              +.+.+.+++.+  .++++|..|+.++-.. .-+..         .+..
T Consensus       227 R~aAi~Alr~~~~~~p~~--------------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~  282 (336)
T d1lsha1         227 QAEAIMALRNIAKRDPRK--------------VQEIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSM  282 (336)
T ss_dssp             HHHHHHTTTTGGGTCHHH--------------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHH
T ss_pred             HHHHHHHHHHhhhcCcHH--------------HHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHH
Confidence            889999999987665432              44455566544  4678999999888653 22322         3445


Q ss_pred             HHHHh-cCCChhHHHHHHHHHHHhcCC
Q 009647          403 LLHLL-STSPFDIKKEVAYVLGNLCVS  428 (530)
Q Consensus       403 Li~lL-~~~~~~v~~eA~~aL~nl~~~  428 (530)
                      +...+ ..++..|.......|.|++..
T Consensus       283 i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         283 VAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            55656 446778888888888888763

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.09  E-value=9.3  Score=34.73  Aligned_cols=172  Identities=15%  Similarity=0.117  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcHHHHHHcCCHHHHHHHhcC----C------CChHHHHHHHHHHHHHhcCChhhHHhhc
Q 009647          108 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----G------SPDEQLLEAAWCLTNIAAGKQEETKALL  177 (530)
Q Consensus       108 ~~~~~~a~~~lr~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~------~~~~~~~eA~~~L~nia~~~~~~~~~i~  177 (530)
                      .+.....+..|+--|...+-..++.+ ..+++..|+.+|..    .      .+...+.++..||..+.... .....++
T Consensus        17 ~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~-~G~~~vl   94 (343)
T d2bnxa1          17 DMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTML   94 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence            44556677788777776655556666 45677778877741    1      11346778999999998644 3455555


Q ss_pred             ---CCcHHHHHhhcCCCCHHHHHHHHHHHHhhcCCC--chhHH----------HHHhcCChhhhHhhcCCC-ChhHHHHH
Q 009647          178 ---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG--EEFRN----------VLLSQGALPPLARMMLPN-KGSTVRTA  241 (530)
Q Consensus       178 ---~~v~~L~~lL~~~~~~~v~~~a~~~L~nla~d~--~~~r~----------~~~~~g~i~~L~~lL~~~-~~~~~~~a  241 (530)
                         +++..+...|.+ +.+.++..|+-.|..+|..+  +..-.          ..-+.+-..+++..+.+. +.+....+
T Consensus        95 ~~~~~i~~l~~~L~s-~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~  173 (343)
T d2bnxa1          95 ETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC  173 (343)
T ss_dssp             HSSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH
T ss_pred             cChHHHHHHHHccCC-CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHH
Confidence               488889988877 78999999999999998532  11112          222345677788777754 56666666


Q ss_pred             HHHHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCCHHHHH
Q 009647          242 AWALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEELTT  283 (530)
Q Consensus       242 ~~~L~nL~~~~~~~~~~-----~~v~~~~~l~~L~~lL~~~d~~v~~  283 (530)
                      +..+-.|+.+. +....     .-+...|+.+.+-++=..+++++..
T Consensus       174 m~lIN~li~~~-~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         174 LQLINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHcCc-ccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence            66666677553 22211     1122356665555544445554433