Citrus Sinensis ID: 009652


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MVVAAVSTAISNTPKPTSTTTQNPTTRTRPPLLPSDPENGLANHRRPKSREVTSRYLSSSVSSSSSSSSTSSTASKRCPSPLVSRRTSSTTATMTPISSAHSTVKRSQSAERGRPVTPRLNSNGHLRTGELSAAQKMLFTSTRSLSVSFQGESFPLQVSKAKPAPSPSPISTSSAVRKGTPERRKAVTSARDHTENSKPERWPGRSRQPNSLSRSVDCTDERRNLVGSGGNVVRALQNSMIDNSNNSNRALFETRLSTDSANAVLDKIQSQKKKQENDDGGVRYDLTASDTESVSSGSTSEAHERNGVGIVNPRGPRGIVVPARFWHETSNRLRQQADPSTPVSKTNGLKIACTPKLIVPKKFGFDSPASSPKGVVNTRGLSSPLRSAARPASPSKLVTSAGSSPVRGLSPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQVR
cEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cEEEEEEcccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MVVAAVSTAisntpkptstttqnpttrtrppllpsdpenglanhrrpksrevtSRYLSssvsssssssstsstaskrcpsplvsrrtssttatmtpissahstvkrsqsaergrpvtprlnsnghlrtGELSAAQKMLFTSTrslsvsfqgesfplqvskakpapspspistssavrkgtperRKAVTSardhtenskperwpgrsrqpnslsrsvdctderrnlvgsGGNVVRALQNSmidnsnnsnRALFETRLSTDSANAVLDKIQSQKkkqenddggvrydltasdtesvssgstseaherngvgivnprgprgivvparfwhetsnrlrqqadpstpvsktnglkiactpklivpkkfgfdspasspkgvvntrglssplrsaarpaspsklvtsagsspvrglspsrvrntamgmnssnlisvsnapsvmsyavdvrrgkvgenrvVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQVR
MVVAAVStaisntpkptstttqnpttrtrppllpsdpenglanhrrpksrevtsrylsssvsssssssstsstaskrcpsplvsrrtssttatmtpissahstvkrsqsaergrpvtprlnsnghlrTGELSAAQKMLFTSTRSLSVSFQGESFPlqvskakpapspspistssavrkgtperrkavtsardhtenskperwpgrsrqpnslsrsvdctderrnlvgsgGNVVRALQnsmidnsnnSNRALFETRLSTDSANAVLDKiqsqkkkqenddggvrydltasdtesvssgstseaherngvgivnprgprGIVVPARFWHETsnrlrqqadpstpvsktnglkiACTPKLIVPKKfgfdspasspkgvvntrglssplrsaarpaspsklvtsagsspvrglspSRVRNTAMGmnssnlisvsnapsVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNawiassrlresvrTKRTELqllkqnlkltsilksqvr
MVVAAVSTAISntpkptstttqnpttrtrppllpsdpENGLANHRRPKSREVTSRYLsssvsssssssstsstasKRCPSPLVsrrtssttatmtpissaHSTVKRSQSAERGRPVTPRLNSNGHLRTGELSAAQKMLFTSTRSLSVSFQGESFPLQVskakpapspspistssaVRKGTPERRKAVTSARDHTENSKPERWPGRSRQPNSLSRSVDCTDERRNLVGSGGNVVRALQNSMIDNSNNSNRALFETRLSTDSANAVLDKIQSQKKKQENDDGGVRYDLtasdtesvssgstsEAHERNGVGIVNPRGPRGIVVPARFWHETSNRLRQQADPSTPVSKTNGLKIACTPKLIVPKKFGFDSPASSPKGVVNTRGlssplrsaarpaspsKLVTSAGSSPVRGLSPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQVR
*********************************************************************************************************************************************************************************************************************************************************************************************************************IV***GPRGIVVPARFWH********************GLKIACTPKLIVPKKFG**********************************************************************VMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRL*****************************
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************HLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQV*
****************************RPPLLPSDPEN***************************************************************************PVTPRLNSNGHLRTGELSAAQKMLFTSTRSLSVSFQGESFP*************************************************************DCTDERRNLVGSGGNVVRALQNSMIDNSNNSNRALFETRLSTDSANAVLDK************GGVRYDLTA****************RNGVGIVNPRGPRGIVVPARFWHETS***************TNGLKIACTPKLIVPKKFGFDSPASSPKGVVNTR******************************SPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQVR
******************************************************************************************************************************************************GESFPLQ******************************************************************************************************************************************************************************************************************************************************************************************V*******GENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQV*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
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MVVAAVSTAISNTPKPTSTTTQNPTTRTRPPLLPSDPENGLANHRRPKSREVTSRYLSSSVSSSSSSSSTSSTASKRCPSPLVSRRTSSTTATMTPISSAHSTVKRSQSAERGRPVTPRLNSNGHLRTGELSAAQKMLFTSTRSLSVSFQGESFPLQVSKAKPAPSPSPISTSSAVRKGTPERRKAVTSARDHTENSKPERWPGRSRQPNSLSRSVDCTDERRNLVGSGGNVVRALQNSMIDNSNNSNRALFETRLSTDSANAVLDKIQSQKKKQENDDGGVRYDLTASDTESVSSGSTSEAHERNGVGIVNPRGPRGIVVPARFWHETSNRLRQQADPSTPVSKTNGLKIACTPKLIVPKKFGFDSPASSPKGVVNTRGLSSPLRSAARPASPSKLVTSAGSSPVRGLSPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
225458810 743 PREDICTED: uncharacterized protein LOC10 0.941 0.670 0.574 1e-137
255538090629 conserved hypothetical protein [Ricinus 0.914 0.769 0.569 1e-128
302142213580 unnamed protein product [Vitis vinifera] 0.835 0.762 0.520 1e-117
225428965 639 PREDICTED: uncharacterized protein LOC10 0.928 0.768 0.522 1e-116
224067214 741 predicted protein [Populus trichocarpa] 0.865 0.618 0.534 1e-114
356562245618 PREDICTED: uncharacterized protein LOC10 0.880 0.754 0.516 1e-107
356553992615 PREDICTED: uncharacterized protein LOC10 0.884 0.760 0.517 1e-106
147797340601 hypothetical protein VITISV_014039 [Viti 0.850 0.748 0.514 1e-100
449450550628 PREDICTED: uncharacterized protein LOC10 0.930 0.783 0.488 8e-97
449523644628 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.930 0.783 0.488 9e-97
>gi|225458810|ref|XP_002283295.1| PREDICTED: uncharacterized protein LOC100242050 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 306/533 (57%), Positives = 375/533 (70%), Gaps = 35/533 (6%)

Query: 9   AISNTPKPTSTT----TQNPTTRTRPPLLPSDPENGLANHRRPKSREVTSRYLSSSVSSS 64
            IS TP P +++     QNPT   RPPL+PS+ +NG+A  RRPK REVTSRYLSSS S+S
Sbjct: 105 VISATPNPKTSSREGSHQNPT---RPPLIPSEADNGVA-LRRPKGREVTSRYLSSSTSTS 160

Query: 65  SSSSSTSSTASKRCPSPLVSRRTSSTTATMTPISSAHSTVKRSQSAERGRPVTPRLNSNG 124
           +SSS++SS++S+RC SPLVSR T+S++A MTP+ +  S +KRSQS ER RPVTPR N+  
Sbjct: 161 TSSSTSSSSSSRRCASPLVSR-TASSSAVMTPMPAPSSLIKRSQSVERRRPVTPRPNTFD 219

Query: 125 HL--RTGELSAAQKMLFTSTRSLSVSFQGESFPLQVSKAKPAPSPSPISTSSAVRKGTPE 182
                 GE++ A KML TS RSLSVSFQGESF L+VSK KPAP+        +VRKGTPE
Sbjct: 220 FRPGNAGEVTTASKMLITSARSLSVSFQGESFSLRVSKTKPAPA--------SVRKGTPE 271

Query: 183 RRKAVTSARDHTENSKP---ERWPGRSRQPNSLSRSVDCTDERRNLVGSGGNVVRALQNS 239
           RRK   +  D TENSKP    RWPGRSRQ NSL+RS+DCTDE++ L GSG  + R+LQ S
Sbjct: 272 RRKPTPTRADQTENSKPVDQHRWPGRSRQVNSLTRSMDCTDEKKKLGGSG-IMARSLQQS 330

Query: 240 MIDNSNNSNRALFETRLSTDSANAVLDKIQSQKKKQENDDGGVRYDLTASDTESVSSGST 299
           MID  N   R   + RL+ DS NA L K              +  D  ASDTESVSSGST
Sbjct: 331 MIDERN---RTPLDGRLNLDSGNAELGKANELVNANSVVGSTMTSDPAASDTESVSSGST 387

Query: 300 SEAHERNGVGIVNPRG--PRGIVVPARFWHETSNRLRQQADPSTPVSKTNGLKI-ACTPK 356
           S A E  G G        PRGI+VPARFW ETSNRLR+  +PS+P SK+NGL+  A  PK
Sbjct: 388 SGAQESGGGGGGTQGRGVPRGIMVPARFWQETSNRLRRTPEPSSPQSKSNGLRTPAVPPK 447

Query: 357 LIVPKKFGFDSPASSPKGVVNTRGLSSPLRSAARPASPSKLVTSAGSSPVRGL-SPSRVR 415
           LI PKK   DSP SSP+G++ +RG  SPLR   RPASPSKLVT++  SP+RG+ SP+RVR
Sbjct: 448 LIAPKKLLTDSPMSSPRGILPSRG-QSPLRGPVRPASPSKLVTTSTYSPLRGMPSPTRVR 506

Query: 416 NTAMGMNSSNLISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARA 475
                +N +    +SN PS++S+A DVRRGKVGENR+VDAHLLRL HNR LQWRF+NARA
Sbjct: 507 AVVGSLNGN----LSNNPSILSFAADVRRGKVGENRMVDAHLLRLLHNRYLQWRFINARA 562

Query: 476 NAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQV 528
           +A+L  QR+NAE+SL NA +A   LR+SVR KR  LQL++Q LKLT+ILK Q+
Sbjct: 563 DASLLVQRMNAEQSLCNARVAIVDLRDSVRDKRKMLQLMRQKLKLTTILKGQI 615




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538090|ref|XP_002510110.1| conserved hypothetical protein [Ricinus communis] gi|223550811|gb|EEF52297.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|302142213|emb|CBI19416.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428965|ref|XP_002263972.1| PREDICTED: uncharacterized protein LOC100242868 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067214|ref|XP_002302412.1| predicted protein [Populus trichocarpa] gi|222844138|gb|EEE81685.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356562245|ref|XP_003549382.1| PREDICTED: uncharacterized protein LOC100782524 [Glycine max] Back     alignment and taxonomy information
>gi|356553992|ref|XP_003545334.1| PREDICTED: uncharacterized protein LOC100795915 [Glycine max] Back     alignment and taxonomy information
>gi|147797340|emb|CAN69354.1| hypothetical protein VITISV_014039 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450550|ref|XP_004143025.1| PREDICTED: uncharacterized protein LOC101221628 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449523644|ref|XP_004168833.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101221628 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
TAIR|locus:2007233 659 QWRF2 "QWRF domain containing 0.873 0.701 0.393 1.4e-71
TAIR|locus:2091166 644 SCO3 "AT3G19570" [Arabidopsis 0.843 0.692 0.378 1.8e-64
TAIR|locus:2167756 261 QWRF9 "AT5G43160" [Arabidopsis 0.247 0.501 0.492 2.5e-26
TAIR|locus:2131949 644 QWRF8 "AT4G30710" [Arabidopsis 0.344 0.282 0.350 3.2e-25
TAIR|locus:2061416 609 QWRF4 "QWRF domain containing 0.296 0.257 0.405 1.6e-24
TAIR|locus:2051869 474 EDE1 "ENDOSPERM DEFECTIVE 1" [ 0.249 0.278 0.340 1.7e-12
TAIR|locus:2122639 395 QWRF7 "QWRF domain containing 0.156 0.210 0.385 6.9e-09
TAIR|locus:2080522 451 QWRF6 "QWRF domain containing 0.221 0.259 0.322 5.5e-08
TAIR|locus:505006260 482 QWRF3 "AT2G20815" [Arabidopsis 0.136 0.149 0.423 6.3e-06
TAIR|locus:2007233 QWRF2 "QWRF domain containing 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 200/508 (39%), Positives = 260/508 (51%)

Query:    43 NHRRPKSREVTSRYLXXXXXXXXXXXXXXXXXXKRCPSPLVXXXXXXXXXXXXXXXXXHS 102
             +H    +   T+                     KR PSP                     
Sbjct:    46 SHSVSSTTTTTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRSTTNSASNSIKTPSL 105

Query:   103 TVKRSQSAERGRPVTPRLNSNGHLRTGELSAAQKMLFTSTRSLSVSFQGESFPLQVXXXX 162
               KRSQS +R RP    +     + T E+SAA KML TSTRSLSVSFQGE+F L +    
Sbjct:   106 LPKRSQSVDRRRPSAVSVT----VGT-EMSAATKMLITSTRSLSVSFQGEAFSLPISKKK 160

Query:   163 XXXXXXXXXXXXXVRKGTPERRKAVTSARDHTENSKP---ERWPGRSRQ-------PNSL 212
                           RK TPERR++ T  RD  ENSKP   +RWPG SR+       PNSL
Sbjct:   161 ETTSTPVSH-----RKSTPERRRS-TPVRDQRENSKPVDQQRWPGASRRGNSESVVPNSL 214

Query:   213 SRSVDCTDERRNLVGSGGNVVRALQNSMIDNSNNSNRALFETRLSTD--SANAVLDKIQS 270
             SRS+DC  +R  L GSG      L NSMID S    R     RLS D    +  LD    
Sbjct:   215 SRSLDCGSDRGKL-GSGFVGRSMLHNSMIDESP---RVSVNGRLSLDLGGRDEYLDIGDD 270

Query:   271 QKKKQEND-DGGVRYDLXXXXXXXXXXXXXXEAHE-RNGVG--IVNPRG-PRGIVVPARF 325
              +++  N     V  D                  E  +GV   I   +  PR I+  ARF
Sbjct:   271 IQRRPNNGLTSSVSCDFTASDTDSVSSGSTNGVQECGSGVNGEISKSKSLPRNIMASARF 330

Query:   326 WHETSNRLRQQADPSTPVSKTNGLKIAC-TPKLIVPKKFGFDS-PASSPKGVVN-TRGXX 382
             W ET++RLR+  DP +P+S + GLK +  + K  + K+F  D+ P SSP+G+ +  RG  
Sbjct:   331 WQETNSRLRRLQDPGSPLSSSPGLKTSSISSKFGLSKRFSSDAVPLSSPRGMASPVRGSA 390

Query:   383 XXXXXXXXXXXXXKLVTSAGSSPVRGLS-PSRVRNTAMG-MNSSNLISVSNAPSVMSYAV 440
                          KL  +  SSP R LS PSR RN     MN+ N    +N PS++S++ 
Sbjct:   391 IRSASPS------KLWATTTSSPARALSSPSRARNGVSDQMNAYNR---NNTPSILSFSA 441

Query:   441 DVRRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRL 500
             D+RRGK+GE+RV+DAHLLRL +NR LQWRFVNARA++ +  QRLNAE++L+NAW++ S L
Sbjct:   442 DIRRGKIGEDRVMDAHLLRLLYNRDLQWRFVNARADSTVMVQRLNAEKNLWNAWVSISEL 501

Query:   501 RESVRTKRTELQLLKQNLKLTSILKSQV 528
             R SV  KR +L LL+Q LKL SIL+ Q+
Sbjct:   502 RHSVTLKRIKLLLLRQKLKLASILRGQM 529


GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2091166 SCO3 "AT3G19570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167756 QWRF9 "AT5G43160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131949 QWRF8 "AT4G30710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061416 QWRF4 "QWRF domain containing 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051869 EDE1 "ENDOSPERM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122639 QWRF7 "QWRF domain containing 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080522 QWRF6 "QWRF domain containing 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006260 QWRF3 "AT2G20815" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00014945001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (555 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
pfam04484313 pfam04484, DUF566, Family of unknown function (DUF 5e-35
pfam05109830 pfam05109, Herpes_BLLF1, Herpes virus major outer 0.003
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) Back     alignment and domain information
 Score =  133 bits (336), Expect = 5e-35
 Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 19/238 (7%)

Query: 292 ESVSSGSTSEAHERNGVGIVNPRGPRGIVVPARFWHETSN-RLRQQADPSTPVSKTNGLK 350
            SVSSGSTS            PR      + + F   +++ R R+   P++P S +    
Sbjct: 3   ASVSSGSTSGDASS-------PRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARN 55

Query: 351 IACTPKLIVPKKFGFDSPASSPKGVVNTRGLSSPLRSAARPASPSKLVTSAGSSPVRGLS 410
            + +    + K+     P+S  +G +++R +S    S +  AS +  + +A +S     S
Sbjct: 56  TSSSSSFGLSKQR----PSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSS--S 109

Query: 411 PSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRLLQWRF 470
           PSR R T     SS      N PSV+S+  DV+RGK G +++ DAH LRL +NRLLQWRF
Sbjct: 110 PSRSRRTTSSDLSSG-----NGPSVLSFMADVKRGKKGPSKIEDAHQLRLLYNRLLQWRF 164

Query: 471 VNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQV 528
           VNARA AA++ Q+LNAE+ L+NAW+  S LR SV  KR +LQ L+Q LKL S+LKSQ+
Sbjct: 165 VNARAEAAMAVQKLNAEKQLFNAWLRISELRNSVAMKRIKLQRLRQELKLNSVLKSQM 222


Family of related proteins that is plant specific. Length = 313

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 529
PF04484311 DUF566: Family of unknown function (DUF566) ; Inte 100.0
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific Back     alignment and domain information
Probab=100.00  E-value=1.5e-52  Score=423.56  Aligned_cols=217  Identities=49%  Similarity=0.685  Sum_probs=165.9

Q ss_pred             cccccCCCchhhcccCccccCCCCCCcccccccccccc-ccccccCCCCCCCcccCCCCcccCCCcccCCcccccCCCCC
Q 009652          292 ESVSSGSTSEAHERNGVGIVNPRGPRGIVVPARFWHET-SNRLRQQADPSTPVSKTNGLKIACTPKLIVPKKFGFDSPAS  370 (529)
Q Consensus       292 eSvSSgsss~~~~~~~~~~~~~~~~rg~~vpARf~q~t-~sRlrRl~~pgsp~~~~~~~~~~~~~k~~~~kK~~~~s~~S  370 (529)
                      |+|+||+++|.++.+.     ..++|..-.+ |||+++ ++|+++|++|+++.+..++.+...+..    .+.....+.+
T Consensus         1 ~svsS~sts~~~~~~~-----~~s~r~~~~~-r~~~~~~~sr~~~~~~~~s~~~s~~~~~~~s~s~----~~~~~~~~~s   70 (311)
T PF04484_consen    1 DSVSSGSTSGSQSPPR-----RVSRRRLSSS-RFWQESTRSRSRRLSDPSSPRSSSPSSPTSSSSS----NSSSRSNSKS   70 (311)
T ss_pred             CCcCCCCCCCCCCCCC-----CCCCCCCCCc-cccccccCCcccccCCCCCCCCCCCCccccCCCc----cccccccccc
Confidence            6899999999988631     1223333333 999997 999999999999977776655433332    1222222223


Q ss_pred             CCCccccCCCCCCCCcCC--CCCCCCCcccccCCCCCCCCC-CCCccccccCCCCcccccccCCCCccccchhhcccccc
Q 009652          371 SPKGVVNTRGLSSPLRSA--ARPASPSKLVTSAGSSPVRGL-SPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKV  447 (529)
Q Consensus       371 Sp~~~~~sr~~~SP~r~~--~RpsSPsk~~~~s~~spsR~~-sPsR~R~~~~~~ss~~~~~~~~~~silsf~~D~rkgKk  447 (529)
                      .+.+. .++++.||.|..  ..+.+|+++...   + .+.. +|+|.|++++..      ++++.++||+|++|++||||
T Consensus        71 ~~~~~-~ss~~~Sp~r~~~~~~~~~~~~~~~~---s-~~~~~sPsr~r~~~~~~------~~~~~~si~s~~~d~~rgkk  139 (311)
T PF04484_consen   71 LPGGS-LSSWALSPSRSSSSSSPSSPSSLSTS---S-SSPSSSPSRSRRSTSSG------QSNSGPSILSFAADVRRGKK  139 (311)
T ss_pred             ccCCc-CCcCCCCCCCCCCCCCCCCCCccccC---C-CCCCCCCCCCCCCCCcc------cCCCCccccccccccccccc
Confidence            33333 334456887742  233344444332   1 1222 699999664322      44788999999999999999


Q ss_pred             CCccchhhhhhhhhhccchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHhhhh
Q 009652          448 GENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQ  527 (529)
Q Consensus       448 ~~~~~Ed~HqLRLLhNR~LQWRFaNARAea~~~~Qk~~AE~~L~~aW~~is~Lr~sV~~KRieLQ~lkq~~KL~~IL~~Q  527 (529)
                      +++||||+|||||||||||||||||||||+++++|+++||++||++|++|++||++|++||||||++||++||++||++|
T Consensus       140 ~~~~~Ed~H~LRLLhNR~LQWRFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q  219 (311)
T PF04484_consen  140 GASQIEDAHQLRLLHNRLLQWRFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQ  219 (311)
T ss_pred             CcchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 009652          528 VR  529 (529)
Q Consensus       528 m~  529 (529)
                      |.
T Consensus       220 ~~  221 (311)
T PF04484_consen  220 MP  221 (311)
T ss_pred             Hh
Confidence            94




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 51/382 (13%), Positives = 103/382 (26%), Gaps = 109/382 (28%)

Query: 200 ERWPGRSRQPNSLSRSVDCTDERRNLVGSG-----GNVVR-----ALQNSMIDNSNNSNR 249
                  RQP+ ++R     ++R  L          NV R      L+ ++++     N 
Sbjct: 96  SPIKTEQRQPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 250 ALF------ETRLSTDSANAVLDKIQSQKKKQENDDGGVRYDLTASDTESVSSGSTSEAH 303
            +       +T +    A  V        K Q   D  + +         ++  + +   
Sbjct: 154 LIDGVLGSGKTWV----ALDVC----LSYKVQCKMDFKIFW---------LNLKNCNSPE 196

Query: 304 E---------RNGVGIVNPRGPRGIVVPARFWHETSNRLRQ-QADPSTPVSKTNGLKI-- 351
                              R      +  R  H     LR+            N L +  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYE----NCLLVLL 251

Query: 352 -ACTPKLIVPKKFGFDSPASSPKGVVNTRGLSSPLRSAARPASPSKLVTSAGSSPVRGLS 410
                K      F         K ++ TR      +      S +     +       L+
Sbjct: 252 NVQNAKAW--NAFNLSC-----KILLTTRF-----KQVTDFLSAATTTHISLDHHSMTLT 299

Query: 411 PSRVRN---TAMGMNSSNL--ISVSNAPSVMSYAVDVRRGKVGENRVVDAHLLRLFHNRL 465
           P  V++     +     +L    ++  P  +S         + E        +R      
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--------IAE-------SIRDGLATW 344

Query: 466 LQWRFVNARA-----NAALSAQRLNAERSLY--------NAWIASSRL--------RESV 504
             W+ VN         ++L+       R ++        +A I +  L        +  V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 505 RTKRTELQ---LLKQNLKLTSI 523
                +L    L+++  K ++I
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTI 426


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00