Citrus Sinensis ID: 009664
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | yes | no | 0.998 | 0.942 | 0.704 | 0.0 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 1.0 | 0.929 | 0.658 | 0.0 | |
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | no | no | 0.956 | 0.935 | 0.298 | 6e-61 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.958 | 0.944 | 0.285 | 2e-59 | |
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | no | no | 0.947 | 0.927 | 0.271 | 3e-58 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | yes | no | 0.856 | 0.508 | 0.25 | 7e-31 | |
| Q5RAG2 | 1104 | Extended synaptotagmin-1 | yes | no | 0.928 | 0.444 | 0.257 | 1e-29 | |
| Q9Z1X1 | 1088 | Extended synaptotagmin-1 | no | no | 0.930 | 0.452 | 0.245 | 1e-29 | |
| Q9BSJ8 | 1104 | Extended synaptotagmin-1 | yes | no | 0.928 | 0.444 | 0.255 | 2e-29 | |
| Q3U7R1 | 1092 | Extended synaptotagmin-1 | no | no | 0.931 | 0.451 | 0.241 | 3e-29 |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/561 (70%), Positives = 463/561 (82%), Gaps = 33/561 (5%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
MGF G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVS+I+ +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE-- 418
DVWLKLVKDL++QRDTK RG+VHLELLY P+G N NPF + SMTSLE+VL N
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKNDTTD 419
Query: 419 ------------------------------KALKSGANGTEAIELEKDASQKRREVVNDC 448
+ L A+ + ++K ++ + VVND
Sbjct: 420 EENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDS 479
Query: 449 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDG 508
LNP+WNQTFDFVVEDGLHDML+ EVWDHDTFGKDY+GRCILTLTRVI+E EY D + LD
Sbjct: 480 LNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDE 539
Query: 509 TKSGKLKLHLKWMPQPIYRDT 529
+K+GKL+LHLKWM Q IYRD+
Sbjct: 540 SKTGKLQLHLKWMAQSIYRDS 560
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/568 (65%), Positives = 444/568 (78%), Gaps = 39/568 (6%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
MGF FGL +G+ V G++V F R + RS R++LA TIAAFARMTV+DS+K+LP +FYP
Sbjct: 1 MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKL WLN LEK+WPYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLG
Sbjct: 61 SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120
Query: 121 TVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
TVAPQFTGVSI+E G +G+TMELEMQWD N I+L +KT LGV+LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180
Query: 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
RLIF+PLVDEFP F A+SYSLREKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240
Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
TWPVRKI+PILPGDYS+LELKPVG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++T
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300
Query: 299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358
KK+KTI+N LNPIWNEHFEFIVED STQHL VR++DDEG+ SS+LIG AQV L EL PGK
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360
Query: 359 VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL---- 414
VKD+WLKLVKDL++QRDTK RGQV LELLYCP G E NPF P++S+T LEKVL
Sbjct: 361 VKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPES 420
Query: 415 -----TNGEKALKSG----------------------------ANGTEAIELEKDASQKR 441
T+ +K + S A+ I L+K ++ +
Sbjct: 421 EDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSK 480
Query: 442 REVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT 501
VV D LNP+WNQTFDFVVED LHD+L EVWDHD FGKD +GR I+TLTRV+LEGE+
Sbjct: 481 TRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRVMLEGEFQ 540
Query: 502 DCFELDGTKSGKLKLHLKWMPQPIYRDT 529
+ FELDG KSGKL +HLKW P+ RD
Sbjct: 541 EWFELDGAKSGKLCVHLKWTPRLKLRDA 568
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 161/539 (29%), Positives = 273/539 (50%), Gaps = 33/539 (6%)
Query: 2 GFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPS 61
GF G+ +GLV+G + V + ++ ++RS A RM E P
Sbjct: 12 GFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPE----------IPL 61
Query: 62 WVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRP-FILSSLKFSKFTLG 120
WV ++ W+N LE +WPY+++A + K+ +P++E+ P + + S++F TLG
Sbjct: 62 WVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTLG 121
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
++ P F G+ + + ME ++W AN +I++AIK G+ VQV ++ R+
Sbjct: 122 SLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKA-FGLKATVQVVDLQVFAQPRI 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
+PLV FP FA + SL EK +DF LK+ G D+ +IPGL ++ I D + + W
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
P +VPIL D ++ +PVG + VK+V+A GL KDL+G +DP+ + + +KK
Sbjct: 241 PKTLVVPIL--DPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKK 298
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
+ + +LNP WNE F+F V D TQ L +YD E + + E +G + L E+ P + K
Sbjct: 299 TTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHK 358
Query: 361 DVWLKLVKDLDVQRD----TKYRGQVHLELLYCPF-------GMENVFTNPFAPNFSMTS 409
L+L K LD D KYRG++ +ELLY PF G E AP + +
Sbjct: 359 AFTLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEMPKGFEETQAVQKAPEGTPAA 418
Query: 410 --LEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVED-GLH 466
+ V+ + + ++ + + + +++ + V +P WN+ F F++E+ +
Sbjct: 419 GGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEFTFMLEEPPVR 478
Query: 467 DMLIAEVWDHDT-----FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 520
+ L EV + K+ +G + + V+ F L +K+GK+++ L+W
Sbjct: 479 EKLHVEVLSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELEW 537
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/536 (28%), Positives = 272/536 (50%), Gaps = 29/536 (5%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
+GF FG +G+V+G + + F ++ +++ + A M E P
Sbjct: 11 IGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPE----------IP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFTL 119
WV ++ WLN + +WPY+++A ++ KS +P++ EQ + + S++F TL
Sbjct: 61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120
Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
G++ P F G+ + + MEL ++W N +II+ K G+ VQV ++ R
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATPR 179
Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
+ +PLV FP FA + SL +K ++DF LK++G D+ IPGL ++ I D + +
Sbjct: 180 ITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYL 239
Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
WP V I+ D S+ KPVG L VK+++A L KDL+G SDPY L + K
Sbjct: 240 WPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGK 297
Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
K+ +++LNP WNE F+ +V++ +Q L + +YD E + + IG ++L +L P +
Sbjct: 298 KTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEP 357
Query: 360 KDVWLKLVKDLDVQR--DTKYRGQVHLELLYCPFGMENVFTNPFAPNF---------SMT 408
K + L+L+K ++ + K RGQ+ +E+ Y PF +++ N PN S
Sbjct: 358 KLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTG 417
Query: 409 SLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVV-EDGLHD 467
L V+ + + L+ + ++ L +++ + V P W++ F F + E ++D
Sbjct: 418 GLLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPIND 477
Query: 468 MLIAEVWDHDT---FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 520
L EV + K+ +G ++ L V+ D + L +K+G++++ L+W
Sbjct: 478 KLHVEVISSSSRLIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQW 533
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 148/546 (27%), Positives = 268/546 (49%), Gaps = 45/546 (8%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
+GF G+ +GL++G +++ S R + T+I+ + +
Sbjct: 11 IGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP---------- 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTL 119
W+ +++ W N + +WPY+++A +I+SSV+P+ Y F + S++F +L
Sbjct: 61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120
Query: 120 GTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
GT+ P GV E + E ++W N +I+L +K L + + VQ+ ++ F + R
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFAIVR 179
Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
+ +PL+ FP F V SL EK +DF LKV+GGD+ +IPGL ++ TI +
Sbjct: 180 VALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYH 239
Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
WP +PIL + ++ KPVG L V +++A+ L KDL+G SDPY L + K
Sbjct: 240 WPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAK 298
Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
K+ +LNP WNEHF+ IV+D ++Q L + ++D + + + +G + L ++ PG+
Sbjct: 299 KTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGER 358
Query: 360 KDVWLKLVKDLDVQRDT---KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTN 416
K+ L L+K+ +V D+ K RG++ ++L Y PF E++ S E+ +
Sbjct: 359 KEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESI-------KRRKESREEKSSE 411
Query: 417 GEKALKSGANGTEAIELEKDASQKRRE-----------------VVNDCLNPIWNQTFDF 459
+ L + A++ KD K++ ++ +P WN+ F F
Sbjct: 412 DDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQF 471
Query: 460 VVED-GLHDMLIAEVWDHDT----FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514
+E+ + + + EV T K+ +G + L V+ G + L +++G +
Sbjct: 472 TLEEPPVKESIRVEVMSKGTGFHFRSKEELGHVDINLDDVVDNGRINQKYHLINSRNGII 531
Query: 515 KLHLKW 520
+ ++W
Sbjct: 532 HIEIRW 537
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 130/520 (25%), Positives = 225/520 (43%), Gaps = 67/520 (12%)
Query: 28 RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
R R +L AAF + E + L + P+W+ F +++ W N + ++WPY+
Sbjct: 77 RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136
Query: 86 NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMEL 143
+ I+ +EP + + + L + F+K G P+ GV + D VT++L
Sbjct: 137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195
Query: 144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
++ + + I + + K R GV+ + G R+I PL+ + P AV+ +K
Sbjct: 196 QICYIGDCEISVELQKIRGGVS------GVQLQGTLRVILEPLLVDKPFIGAVTVFFLQK 249
Query: 203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
L + ++ +PG+++ ++ + D I + P R VP+ G D + L + P
Sbjct: 250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308
Query: 261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
G + V L++AK L KD L GKSDPYA + + + +S+TI +LNP WNE F
Sbjct: 309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG---LQHCRSRTIYKNLNPTWNEVF 365
Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
EF+V + Q L V +Y DE + +G Q+ L ++ +V D W L DT
Sbjct: 366 EFMVYEVPGQDLEVDLY-DEDTDKDDFLGSLQICLGDVMKNRVVDEWFAL-------NDT 417
Query: 377 KYRGQVHLELLYCPF---------------------GMENVFTNPFAP------NFSMTS 409
G++HL L + +EN P P +
Sbjct: 418 T-SGRLHLRLEWLSLLTDQEALTENDSGLSTAILVVFLENACNLPRNPFDYLNGEYRAKK 476
Query: 410 LEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDML 469
L + + N K+ + + ++L + +P+W+Q F F V + L
Sbjct: 477 LSRFVKN-----KASRDPSSYVKLTVGKKTFTSKTCPHSKDPVWSQVFSFFVHSVAAEQL 531
Query: 470 IAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELD 507
+V D + + +G L R++ + T CF+LD
Sbjct: 532 CLKVLDDEL--ECALGVLEFPLCRILPCADLTLEQCFQLD 569
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 144/559 (25%), Positives = 251/559 (44%), Gaps = 68/559 (12%)
Query: 6 GLVVGLVV-GLGIIVGF--VRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFY--- 59
GL VG V+ GL + +G+ VR E RS LR+ AR ++D +++ Y
Sbjct: 75 GLSVGFVLFGLALYLGWRRVRDEKERS-LRA---------ARQLLDDEEQLTAKTLYMSH 124
Query: 60 ---PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSK 116
P+WV F +K WLN + ++WP++ + +L+ +V P + P L + F++
Sbjct: 125 RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTR 183
Query: 117 FTLGTVAPQFTGVSIIE-DGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFT 175
LG + GV + + ++L + + + I + +K A VK +
Sbjct: 184 VELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLH 240
Query: 176 GVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIE 235
GV R+I PL+ + P AVS + LD + ++ IPGLS + I D+I
Sbjct: 241 GVLRVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIA 299
Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
+ P R +VP++P +L+ P G + + L+ A+GLT+KD + GKSDPY
Sbjct: 300 AFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPY 359
Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
A VR L +T S+ I+ +LNP W E +E +V + Q + V ++D + + L G
Sbjct: 360 A--LVR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFL-GR 415
Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF-----GMENVF---- 397
++ + ++ V D W L +GQVHL L + +E V
Sbjct: 416 MKLDVGKVLQAGVLDDWFPL---------QGGQGQVHLRLEWLSLLSDAEKLEQVLQWNQ 466
Query: 398 ---TNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELE-KDASQKRREVVN-DCLNPI 452
+ P P+ ++ + K ++L +D +Q+ + V + +C P+
Sbjct: 467 GVSSRPEPPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNC--PV 524
Query: 453 WNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELDGTK 510
W + F F ++D L +V D +G L L R++ E F+L +
Sbjct: 525 WEEAFRFFLQDPQSQELDVQVKDDSR--ALTLGALTLPLARLLTAPELILDQWFQLSSSG 582
Query: 511 SGKLKLHLKWMPQPIYRDT 529
+L++K + + +Y D+
Sbjct: 583 PNS-RLYMKLVMRILYLDS 600
|
May play a role as calcium-regulated intrinsic membrane protein. Pongo abelii (taxid: 9601) |
| >sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 137/558 (24%), Positives = 250/558 (44%), Gaps = 66/558 (11%)
Query: 6 GLVVGLVV-GLGIIVGFVRSENARSK-LRSELATTIAAFARMTVEDSKKILPAEFY---- 59
GL VG V+ GL + +G+ R + + + LR+ AR ++D ++I Y
Sbjct: 67 GLSVGFVLFGLALYLGWRRVRDGKERSLRA---------ARQLLDDEERITAETLYMSHR 117
Query: 60 --PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKF 117
P+WV F +K WLN + ++WP++ + +L+ +V P + P L + F++
Sbjct: 118 ELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRV 176
Query: 118 TLGTVAPQFTGVSI-IEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTG 176
LG + GV + + ++L + + + I + +K A VK + G
Sbjct: 177 ELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHG 233
Query: 177 VFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIED 236
V R+I PL+ + P AVS ++ LD + ++ IPGLS + I D+I
Sbjct: 234 VLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAA 292
Query: 237 SITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPYA 287
+ P R +VP++P +L+ P G + + L+ A+GL++KD + GKSDPYA
Sbjct: 293 FLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYA 352
Query: 288 VLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCA 347
++ V +T S+ I+ +LNP W E +E IV + Q + V ++D + + L G
Sbjct: 353 LVRVG---TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFL-GRM 408
Query: 348 QVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME------------N 395
++ + ++ V D W L +GQVHL L + +
Sbjct: 409 KLDVGKVLQAGVLDNWYPL---------QGGQGQVHLRLEWLSLLPDAEKLDQVLQWNRG 459
Query: 396 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELE-KDASQKRREVVN-DCLNPIW 453
+ + P P+ ++ + K ++L +D +Q+ + + +C P+W
Sbjct: 460 ITSRPEPPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTQESKATYSTNC--PVW 517
Query: 454 NQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELDGTKS 511
+ F F ++D L +V D +G L L R++ E T F+L +
Sbjct: 518 EEAFRFFLQDPRSQELDVQVKDDSR--ALTLGALTLPLARLLTASELTLDQWFQLSSSGP 575
Query: 512 GKLKLHLKWMPQPIYRDT 529
+L++K + + +Y D+
Sbjct: 576 NS-RLYMKLVMRILYLDS 592
|
May play a role as calcium-regulated intrinsic membrane protein. Rattus norvegicus (taxid: 10116) |
| >sp|Q9BSJ8|ESYT1_HUMAN Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 143/559 (25%), Positives = 251/559 (44%), Gaps = 68/559 (12%)
Query: 6 GLVVGLVV-GLGIIVGF--VRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFY--- 59
GL VG V+ GL + +G+ VR E RS LR+ AR ++D +++ Y
Sbjct: 75 GLSVGFVLFGLALYLGWRRVRDEKERS-LRA---------ARQLLDDEEQLTAKTLYMSH 124
Query: 60 ---PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSK 116
P+WV F +K WLN + ++WP++ + +L+ +V P + P L + F++
Sbjct: 125 RELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTR 183
Query: 117 FTLGTVAPQFTGVSIIE-DGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFT 175
LG + GV + + ++L + + + I + +K A VK +
Sbjct: 184 VELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLH 240
Query: 176 GVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIE 235
GV R+I PL+ + P AVS + LD + ++ IPGLS + I D+I
Sbjct: 241 GVLRVILEPLIGDLPFVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIA 299
Query: 236 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 286
+ P R +VP++P +L+ P G + + L+ A+GL++KD + GKSDPY
Sbjct: 300 AFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPY 359
Query: 287 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 346
A VR L +T S+ I+ +LNP W E +E +V + Q + V ++D + + L G
Sbjct: 360 A--LVR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFL-GR 415
Query: 347 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF-----GMENVF---- 397
++ + ++ V D W L +GQVHL L + +E V
Sbjct: 416 MKLDVGKVLQASVLDDWFPL---------QGGQGQVHLRLEWLSLLSDAEKLEQVLQWNW 466
Query: 398 ---TNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELE-KDASQKRREVVN-DCLNPI 452
+ P P+ ++ + K ++L +D +Q+ + V + +C P+
Sbjct: 467 GVSSRPDPPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNC--PV 524
Query: 453 WNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELDGTK 510
W + F F ++D L +V D +G L L R++ E F+L +
Sbjct: 525 WEEAFRFFLQDPQSQELDVQVKDDSR--ALTLGALTLPLARLLTAPELILDQWFQLSSSG 582
Query: 511 SGKLKLHLKWMPQPIYRDT 529
+L++K + + +Y D+
Sbjct: 583 PNS-RLYMKLVMRILYLDS 600
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 134/555 (24%), Positives = 242/555 (43%), Gaps = 62/555 (11%)
Query: 6 GLVVGLVV-GLGIIVGFVRSENARSK-LRSELATTIAAFARMTVEDSKKILPAEFY---- 59
GL VG V+ GL + +G+ R + + + LR+ AR ++D ++I Y
Sbjct: 65 GLSVGFVLFGLALYLGWRRVRDGKERSLRA---------ARQLLDDEERITAETLYMSHR 115
Query: 60 --PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKF 117
P+WV F +K WLN + ++WP++ + +L+ +V P + P L + F++
Sbjct: 116 ELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRV 174
Query: 118 TLGTVAPQFTGVSI-IEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTG 176
LG + GV + + ++L + + + I + +K A VK + G
Sbjct: 175 ELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKA---GVKGMQLHG 231
Query: 177 VFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIED 236
V R+I PL + P AVS ++ LD + ++ IPGLS + I D+I
Sbjct: 232 VLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAA 290
Query: 237 SITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPYA 287
+ P R +VP++P +L+ P G + + L+ A+GL++KD + GKSDPYA
Sbjct: 291 FLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYA 350
Query: 288 VLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCA 347
++ V +T S+ I+ +LNP W E +E IV + Q + V ++D + + L G
Sbjct: 351 LVRVG---TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKDPDKDDFL-GRM 406
Query: 348 QVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME------------N 395
++ + ++ V D W L +GQVHL L + +
Sbjct: 407 KLDVGKVLQAGVLDNWYPL---------QGGQGQVHLRLEWLSLLPDAEKLDQVLQWNRG 457
Query: 396 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455
+ + P P+ ++ + K ++L + + +P+W +
Sbjct: 458 ITSRPEPPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTRESKATYSTNSPVWEE 517
Query: 456 TFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELDGTKSGK 513
F F ++D L +V D +G L L R++ E T F+L +
Sbjct: 518 AFRFFLQDPRSQELDVQVKDDSR--ALTLGALTLPLARLLTASELTLDQWFQLSSSGPNS 575
Query: 514 LKLHLKWMPQPIYRD 528
+L++K + + +Y D
Sbjct: 576 -RLYMKLVMRILYLD 589
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | ||||||
| 356562953 | 565 | PREDICTED: extended synaptotagmin-1-like | 0.984 | 0.922 | 0.738 | 0.0 | |
| 118484311 | 566 | unknown [Populus trichocarpa] | 0.986 | 0.922 | 0.736 | 0.0 | |
| 449443041 | 567 | PREDICTED: synaptotagmin-5-like [Cucumis | 0.986 | 0.920 | 0.729 | 0.0 | |
| 224144112 | 566 | plant synaptotagmin [Populus trichocarpa | 0.986 | 0.922 | 0.734 | 0.0 | |
| 255579863 | 558 | calcium lipid binding protein, putative | 0.984 | 0.933 | 0.734 | 0.0 | |
| 224120508 | 566 | plant synaptotagmin [Populus trichocarpa | 1.0 | 0.934 | 0.733 | 0.0 | |
| 356562955 | 557 | PREDICTED: extended synaptotagmin-1-like | 0.969 | 0.921 | 0.729 | 0.0 | |
| 357478297 | 566 | Synaptotagmin-1 [Medicago truncatula] gi | 0.973 | 0.909 | 0.731 | 0.0 | |
| 225446229 | 567 | PREDICTED: extended synaptotagmin-1 [Vit | 0.998 | 0.931 | 0.734 | 0.0 | |
| 186478159 | 560 | calcium-dependent lipid-binding domain-c | 0.998 | 0.942 | 0.704 | 0.0 |
| >gi|356562953|ref|XP_003549732.1| PREDICTED: extended synaptotagmin-1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/573 (73%), Positives = 471/573 (82%), Gaps = 52/573 (9%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
MGF FG+VVG++VGL IIVGFVR EN+R+ RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1 MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS QKL+WLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61 SWVVFSSSQKLSWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE I DA+EDSITW
Sbjct: 181 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 241 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
DVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN FTNPFAPN+SMTSLEKVL N
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKN---- 416
Query: 421 LKSGANGTEAIELEKDASQKRRE------------------------------------- 443
ANG E+ E +QK++E
Sbjct: 417 ----ANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKA 472
Query: 444 -------VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496
VVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 473 ETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVIL 532
Query: 497 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 529
EGEY + F LDG KSG L LHLKWMPQPI+RD+
Sbjct: 533 EGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS 565
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118484311|gb|ABK94033.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/573 (73%), Positives = 469/573 (81%), Gaps = 51/573 (8%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1 MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61 SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKTSLEPVLEQYRPVILSSLKFSKFTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFRL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKNLTNKDLIGKSDPFAKLYIRPLPDKTKT 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
DVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN NPF+ +FSMTSLEKV
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVENGLVNPFSSDFSMTSLEKV------- 413
Query: 421 LKSGANGTEAIELEKDASQKRRE------------------------------------- 443
LKSG NGT I + +QKRRE
Sbjct: 414 LKSGENGTGVIGNGNEVTQKRREVIIRGVLAVTVISAEDLPMVDLMGKADPFVTLTMKKS 473
Query: 444 -------VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496
VVN+CLNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 474 EMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLIIEVWDHDTFGKDYMGRCILTLTRVIL 533
Query: 497 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 529
EGEY +CF+LD KSG+L LHLKW PQ IYRD+
Sbjct: 534 EGEYKECFQLDEAKSGRLNLHLKWTPQHIYRDS 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443041|ref|XP_004139289.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449517890|ref|XP_004165977.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/574 (72%), Positives = 470/574 (81%), Gaps = 52/574 (9%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
M F GLV+GL VGLG++VGFV+SENARSK R++LA TIAAFARMTVEDS+K+LP ++YP
Sbjct: 1 MAFVLGLVLGLFVGLGLVVGFVKSENARSKRRADLAATIAAFARMTVEDSRKLLPPQYYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKLTWLN HL K+WPYVNEAAS+LIK+SVEPVLEQYRP ILSSLKFS+FTLG
Sbjct: 61 SWVVFSQRQKLTWLNQHLTKIWPYVNEAASDLIKASVEPVLEQYRPIILSSLKFSRFTLG 120
Query: 121 TVAPQFTGVSIIEDGGS-GVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFR 179
TVAPQ TG+SIIEDGG+ G+TME EMQWD N SIIL IKTRLGVALPVQVKN+GFTGVFR
Sbjct: 121 TVAPQLTGISIIEDGGTDGITMEFEMQWDGNQSIILDIKTRLGVALPVQVKNLGFTGVFR 180
Query: 180 LIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSIT 239
LIF+PLVDEFP F AV +SLR+KKKLDF LKV+GGDIS IPGL ++E TI DA+EDSIT
Sbjct: 181 LIFKPLVDEFPCFGAVCFSLRQKKKLDFTLKVIGGDISAIPGLYSALEGTIRDAVEDSIT 240
Query: 240 WPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK 299
WPVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RPL ++ K
Sbjct: 241 WPVRKVIPIIPGDYSDLELKPVGILEVKLVQAKELTNKDVIGKSDPYAELYIRPLRDRMK 300
Query: 300 KSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359
SK INNDLNP+WNEHFEF+VEDESTQHLVV++YDDEG+Q+SELIGCAQ++L EL+PGKV
Sbjct: 301 TSKIINNDLNPVWNEHFEFVVEDESTQHLVVKVYDDEGLQASELIGCAQIQLSELQPGKV 360
Query: 360 KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEK 419
KDVWLKLVKDL+V RD K RGQVHLELLYCPFGMEN FTNPFA +F MTSLE VL N
Sbjct: 361 KDVWLKLVKDLEVIRDNKNRGQVHLELLYCPFGMENGFTNPFASDFRMTSLESVLKN--- 417
Query: 420 ALKSGANGTEAIELEKDASQKRRE------------------------------------ 443
ANGTEA E E+ +QKR+E
Sbjct: 418 ----RANGTEATESEQAVTQKRKEVIIRGVLSVTVISAEDLPATDLVGKSDPYVVLTMKK 473
Query: 444 --------VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVI 495
VVN+ LNPIWNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVI
Sbjct: 474 SGMKNKTRVVNESLNPIWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVI 533
Query: 496 LEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 529
LEGEY + FELDG KSG+L LHLKWMPQPIYRDT
Sbjct: 534 LEGEYKESFELDGAKSGRLNLHLKWMPQPIYRDT 567
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144112|ref|XP_002325190.1| plant synaptotagmin [Populus trichocarpa] gi|222866624|gb|EEF03755.1| plant synaptotagmin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/573 (73%), Positives = 469/573 (81%), Gaps = 51/573 (8%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
M FF GL+ GL VGL +IVGFV+SENARSKLRSELATTIAAFARMTV+DS+KILPAEFYP
Sbjct: 1 MSFFVGLIFGLAVGLALIVGFVKSENARSKLRSELATTIAAFARMTVDDSRKILPAEFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKL WLN HL K+WPYV++AAS LIK+S+EPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61 SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKASLEPVLEQYRPVILSSLKFSKFTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTR GV+LPVQVK+IGFTGVF+L
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILGIKTRFGVSLPVQVKDIGFTGVFKL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IF+PLV EFP F A+ YSLR+KKK+DF LKV+GGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGDISAIPGLDDAIQETIRNAVEDSITW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SK INNDLNPIWNEHFEF+VED STQHLVV++YDDEG+Q+SEL+GCAQV+L ELEPGKVK
Sbjct: 301 SKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDDEGLQASELLGCAQVKLSELEPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
DVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN NPF+ +FSMTSLEKV
Sbjct: 361 DVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVENGLVNPFSSDFSMTSLEKV------- 413
Query: 421 LKSGANGTEAIELEKDASQKRRE------------------------------------- 443
LKSG NGT I + +QKRRE
Sbjct: 414 LKSGENGTGVIGNGNEVAQKRREVIIRGVLAVTVISAEDLPMVDLMGKADPFVTLTMKKS 473
Query: 444 -------VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496
VVN+CLNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 474 EMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLIIEVWDHDTFGKDYMGRCILTLTRVIL 533
Query: 497 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 529
EGEY +CF+LD KSG+L LHLKW PQ IYRD+
Sbjct: 534 EGEYKECFQLDEAKSGRLNLHLKWTPQHIYRDS 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579863|ref|XP_002530768.1| calcium lipid binding protein, putative [Ricinus communis] gi|223529684|gb|EEF31628.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/566 (73%), Positives = 463/566 (81%), Gaps = 45/566 (7%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
M FFFGLV+GL VGL I+VGFV+SENARSK RSELA T+AAFARMTVEDS+KILP+EFYP
Sbjct: 1 MSFFFGLVIGLAVGLAIVVGFVKSENARSKRRSELARTVAAFARMTVEDSRKILPSEFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SW LTWLN HL K+WPYVNEAASELIK+SVEPVLEQYRP ILSSLKFSK TLG
Sbjct: 61 SW--------LTWLNLHLTKIWPYVNEAASELIKASVEPVLEQYRPIILSSLKFSKLTLG 112
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVSIIEDGGSG+TMELEM WD N SI+L IKTRLGV+LPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIVLDIKTRLGVSLPVQVKNIGFTGVFRL 172
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IF+PLV+EFP F AV +SLR+KKKLDF LKV+GGDISTIPG+ D+IE TI DAIEDSITW
Sbjct: 173 IFKPLVNEFPCFGAVCFSLRQKKKLDFTLKVIGGDISTIPGIYDAIEGTIRDAIEDSITW 232
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK++PILPGDYS+LELKPVG LEVKLVQAK LTNKD+IGKSDPYA L++RP+ ++ K
Sbjct: 233 PVRKVIPILPGDYSDLELKPVGMLEVKLVQAKELTNKDIIGKSDPYAELYIRPIRDRIKT 292
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SKTINNDLNPIWNEHFEFIVED STQHLVV+I+DDEG+QSSELIGCAQV+LCEL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFIVEDASTQHLVVKIFDDEGLQSSELIGCAQVQLCELQPGKVK 352
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
DVWLKLVKDL+VQRD + RGQVHLELLYCPFGMEN F NPFAP FSMTSLEKVL G
Sbjct: 353 DVWLKLVKDLEVQRDNRNRGQVHLELLYCPFGMENGFKNPFAPTFSMTSLEKVLKGGVDG 412
Query: 421 LKSGANGTEAIELEKDA-------------------------------------SQKRRE 443
++ NG + +D ++ +
Sbjct: 413 MEITENGQAGTQRRRDVIVRGVLSVTVISAEDLPVVDLMGKADPYVVLTMKKSETRNKTR 472
Query: 444 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDC 503
VVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCI+TLTRVILEGEY D
Sbjct: 473 VVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGRCIMTLTRVILEGEYKDK 532
Query: 504 FELDGTKSGKLKLHLKWMPQPIYRDT 529
F +DG KSG L ++LKWMPQPIYRD+
Sbjct: 533 FPIDGAKSGTLYVNLKWMPQPIYRDS 558
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120508|ref|XP_002331065.1| plant synaptotagmin [Populus trichocarpa] gi|222872995|gb|EEF10126.1| plant synaptotagmin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/566 (73%), Positives = 464/566 (81%), Gaps = 37/566 (6%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
M FF GL++GL VGL +IVGFV+SENARSKLRSELA IAAFARMTVEDS+KILPAE+YP
Sbjct: 1 MSFFVGLIIGLAVGLALIVGFVKSENARSKLRSELAIAIAAFARMTVEDSRKILPAEYYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKL WLN HL K+WPYV++AAS LIK SVEPVLEQYRP ILSSLKFSKFTLG
Sbjct: 61 SWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKDSVEPVLEQYRPIILSSLKFSKFTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL IKTRLGV+LPVQVK+IGFTGVFRL
Sbjct: 121 TVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILDIKTRLGVSLPVQVKDIGFTGVFRL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IF+PLV EFP F AV SLR+KKK+DFKLKVVGGDIS IPGL D+I+ TI +A+EDSITW
Sbjct: 181 IFKPLVAEFPCFGAVCCSLRQKKKMDFKLKVVGGDISAIPGLDDAIQETIQNAVEDSITW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK+VPILPGDYS+LELKPVG LEVKLVQAK LTNKDLIGKSDP+A L++RPLP+KTK
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
+K INNDLNPIWNEHFEF+VED +TQHLVV+IYDDEGIQ++EL+GCAQV+L ELEPGKVK
Sbjct: 301 TKIINNDLNPIWNEHFEFVVEDATTQHLVVKIYDDEGIQAAELLGCAQVKLNELEPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
D+WLKLVKDL+VQRD K RGQVHLELLY PFGMEN N FA +FSMTSLEKVL NG +
Sbjct: 361 DLWLKLVKDLEVQRDNKNRGQVHLELLYRPFGMENGLGNSFASSFSMTSLEKVLKNGANS 420
Query: 421 LKSGANGTE-------------------------------------AIELEKDASQKRRE 443
++ N E + ++K + +
Sbjct: 421 MEITGNVNEVTKKRREVIVRGVLSITVISAEDLPVVDLMGKADPFVTLTMKKSEMRNKTR 480
Query: 444 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDC 503
VVN+ LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVILEGEY DC
Sbjct: 481 VVNNNLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKDC 540
Query: 504 FELDGTKSGKLKLHLKWMPQPIYRDT 529
F+LD KSG+L LHLKW PQ IYRD+
Sbjct: 541 FQLDEAKSGRLNLHLKWSPQHIYRDS 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562955|ref|XP_003549733.1| PREDICTED: extended synaptotagmin-1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/573 (72%), Positives = 465/573 (81%), Gaps = 60/573 (10%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
MGF FG+VVG++VGL IIVGFVR EN+R+ RS+LATT+AAFARMTVEDS+KILP +FYP
Sbjct: 1 MGFIFGVVVGIIVGLAIIVGFVRGENSRAAQRSQLATTVAAFARMTVEDSRKILPPQFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SW LTWLN HL K+WPYVNEAASELIK+SVEP+LE+YRP +L++LKFSKFTLG
Sbjct: 61 SW--------LTWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLG 112
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL IKT LGVALPVQVKNIGFTGVFRL
Sbjct: 113 TVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRL 172
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGDIS IPGL D+IE I DA+EDSITW
Sbjct: 173 IFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITW 232
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK+VPILPGDYS+LELKP G LEVKLVQAK LTNKD+IGKSDPYAV+++RPL E+ KK
Sbjct: 233 PVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKK 292
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SKTINNDLNPIWNEHFEF+VED STQH+ V++YD EG+QSSELIGCAQ++L EL+PGKVK
Sbjct: 293 SKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVK 352
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
DVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN FTNPFAPN+SMTSLEKVL N
Sbjct: 353 DVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKN---- 408
Query: 421 LKSGANGTEAIELEKDASQKRRE------------------------------------- 443
ANG E+ E +QK++E
Sbjct: 409 ----ANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKA 464
Query: 444 -------VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496
VVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVIL
Sbjct: 465 ETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVIL 524
Query: 497 EGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 529
EGEY + F LDG KSG L LHLKWMPQPI+RD+
Sbjct: 525 EGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS 557
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478297|ref|XP_003609434.1| Synaptotagmin-1 [Medicago truncatula] gi|355510489|gb|AES91631.1| Synaptotagmin-1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/552 (73%), Positives = 455/552 (82%), Gaps = 37/552 (6%)
Query: 15 LGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 74
L II+ FVRSEN+RS RS+LATTIAAFARMTVEDS+K+LP++FYPSWVVFS+RQKLTWL
Sbjct: 15 LAIIIAFVRSENSRSARRSQLATTIAAFARMTVEDSRKLLPSQFYPSWVVFSNRQKLTWL 74
Query: 75 NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED 134
N HL K+WPYVNEAASELIK+S EP+LE+YRP ILS+LKFSKFTLGTVAPQFTGVSIIED
Sbjct: 75 NSHLTKIWPYVNEAASELIKTSAEPILEEYRPMILSALKFSKFTLGTVAPQFTGVSIIED 134
Query: 135 GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAA 194
GG GVTMELE+QWD N SIIL IKT +G+ALPVQVKN+GFTGVFRLIF+PLV+EFPGF A
Sbjct: 135 GGDGVTMELEVQWDGNPSIILDIKTLVGLALPVQVKNVGFTGVFRLIFKPLVNEFPGFGA 194
Query: 195 VSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYS 254
V YSLR+KKKLDF LKV+GGDISTIPGL D+IE I DA+EDSITWPVRKIVPILPGDYS
Sbjct: 195 VCYSLRQKKKLDFTLKVIGGDISTIPGLYDAIEGAIRDAVEDSITWPVRKIVPILPGDYS 254
Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
+LELKPVG LEVKLVQAK LTNKD+IGKSDPYAVL++RPL +TKKSKTINNDLNPIWNE
Sbjct: 255 DLELKPVGILEVKLVQAKELTNKDIIGKSDPYAVLYIRPLRNRTKKSKTINNDLNPIWNE 314
Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR 374
HFEFIVED STQHL V++YDDEG+QSSELIGC ++L ELEPGK+KDVWLKLVKDL++QR
Sbjct: 315 HFEFIVEDASTQHLFVKVYDDEGLQSSELIGCTDIKLSELEPGKIKDVWLKLVKDLEIQR 374
Query: 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIE-- 432
D K RGQVHLELLYCP+G EN FTNPFA N+SMTSLEKVL + S N +EA +
Sbjct: 375 DNKNRGQVHLELLYCPYGTENSFTNPFARNYSMTSLEKVLKGSSNGIDSNGNESEAAQRK 434
Query: 433 -----------------------------------LEKDASQKRREVVNDCLNPIWNQTF 457
L+K ++ + VVN+ LNP+WNQTF
Sbjct: 435 KEVIIRGVLSVTVISAEDLPAVDFMGKSDPFVVLTLKKAETKNKTRVVNNSLNPVWNQTF 494
Query: 458 DFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLH 517
DFVVEDGLHDML+ EV+DHDTFGKDYMGR ILTLTR ILEGEY + FELDG KSG L LH
Sbjct: 495 DFVVEDGLHDMLLVEVYDHDTFGKDYMGRVILTLTRAILEGEYKERFELDGAKSGFLNLH 554
Query: 518 LKWMPQPIYRDT 529
LKWMPQ IYRD+
Sbjct: 555 LKWMPQSIYRDS 566
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446229|ref|XP_002265034.1| PREDICTED: extended synaptotagmin-1 [Vitis vinifera] gi|296084522|emb|CBI25543.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/565 (73%), Positives = 464/565 (82%), Gaps = 37/565 (6%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
M FF GLV+G+ VG+G+IV FVRSEN RSK RS LATT+AA ARMTVEDS+KILP++FYP
Sbjct: 1 MSFFLGLVIGITVGIGLIVLFVRSENIRSKQRSALATTVAALARMTVEDSRKILPSKFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKLTWLNHHL K+WPYVNEAASELI+++VEP+LEQYRP ILSSLKFS+FTLG
Sbjct: 61 SWVVFSQRQKLTWLNHHLTKIWPYVNEAASELIRTNVEPILEQYRPMILSSLKFSRFTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TV+PQFTGVSIIEDG +T+ELE+QWD N SIIL I TRLGVALPVQVKNIGFTGVFRL
Sbjct: 121 TVSPQFTGVSIIEDGADCITLELELQWDGNPSIILDINTRLGVALPVQVKNIGFTGVFRL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
+F+PLVDEFP F AV +SLR+KKKLD LKVVGGDIS IPG+SD+I+ TI +AIEDSI W
Sbjct: 181 MFKPLVDEFPCFGAVCFSLRQKKKLDLTLKVVGGDISAIPGISDAIKDTIDNAIEDSIMW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK+VPILPGDYS+LELKPVGTLEVKLVQAK LTNKD+IGKSDP+AVL+VRPLP + K
Sbjct: 241 PVRKVVPILPGDYSDLELKPVGTLEVKLVQAKELTNKDIIGKSDPFAVLYVRPLPNRMKT 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SKTINN LNP+WNEHFEFIVED STQHLVV+IYD+EG+Q+SELIGCAQV+L ELEPGKVK
Sbjct: 301 SKTINNQLNPVWNEHFEFIVEDASTQHLVVKIYDNEGLQASELIGCAQVQLRELEPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKA 420
D W KLVKDL+VQRDTK RGQVHLELLY PFGMEN FTNPFAP FSMTSLEKVL NG
Sbjct: 361 DAWWKLVKDLEVQRDTKNRGQVHLELLYVPFGMENGFTNPFAPKFSMTSLEKVLKNGVDG 420
Query: 421 LKSGANGTEAIE-------------------------------------LEKDASQKRRE 443
+ NG ++ L+K + +
Sbjct: 421 TEVAENGNAVMQKKREVIVRGVLSITVISAEDLPVVDLMGKADPYVVLILKKSEIRNKTR 480
Query: 444 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDC 503
VVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTFGKDYMGRCILTLTRVILEGEY +
Sbjct: 481 VVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGRCILTLTRVILEGEYKET 540
Query: 504 FELDGTKSGKLKLHLKWMPQPIYRD 528
F+LD KSG+L LHLKWMPQPIYRD
Sbjct: 541 FQLDEAKSGRLNLHLKWMPQPIYRD 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478159|ref|NP_172041.2| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|75301121|sp|Q8L706.1|SYT5_ARATH RecName: Full=Synaptotagmin-5; AltName: Full=NTMC2T2.1; AltName: Full=Synaptotagmin E gi|22655178|gb|AAM98179.1| Ca2+-dependent lipid-binding protein, putative [Arabidopsis thaliana] gi|31711980|gb|AAP68346.1| At1g05500 [Arabidopsis thaliana] gi|110737090|dbj|BAF00497.1| putative Ca2+-dependent lipid-binding protein [Arabidopsis thaliana] gi|332189725|gb|AEE27846.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/561 (70%), Positives = 463/561 (82%), Gaps = 33/561 (5%)
Query: 1 MGFFFGLVVGLVVGLGIIVGFVRSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYP 60
MGF G+V+GL+VG+ II+GFV+ EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYP
Sbjct: 1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60
Query: 61 SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 120
SWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+SVEPVLEQYRP I++SL FSK TLG
Sbjct: 61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120
Query: 121 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 180
TVAPQFTGVS+I+ +G+T+EL+MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRL
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180
Query: 181 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 240
IFRPLV++FP F AVS SLREKKKLDF LKVVGGDIS IPGLS++IE TI DA+EDSITW
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240
Query: 241 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 300
PVRK++PI+PGDYS+LELKPVG LEVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPGKVK
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360
Query: 361 DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE-- 418
DVWLKLVKDL++QRDTK RG+VHLELLY P+G N NPF + SMTSLE+VL N
Sbjct: 361 DVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKNDTTD 419
Query: 419 ------------------------------KALKSGANGTEAIELEKDASQKRREVVNDC 448
+ L A+ + ++K ++ + VVND
Sbjct: 420 EENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDS 479
Query: 449 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDG 508
LNP+WNQTFDFVVEDGLHDML+ EVWDHDTFGKDY+GRCILTLTRVI+E EY D + LD
Sbjct: 480 LNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDE 539
Query: 509 TKSGKLKLHLKWMPQPIYRDT 529
+K+GKL+LHLKWM Q IYRD+
Sbjct: 540 SKTGKLQLHLKWMAQSIYRDS 560
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | ||||||
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.739 | 0.698 | 0.757 | 1.9e-201 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.786 | 0.731 | 0.68 | 1.1e-187 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.682 | 0.707 | 0.399 | 2.7e-68 | |
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.865 | 0.852 | 0.287 | 8e-53 | |
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.790 | 0.774 | 0.299 | 9.2e-52 | |
| WB|WBGene00020443 | 713 | esyt-2 [Caenorhabditis elegans | 0.550 | 0.408 | 0.290 | 1.1e-35 | |
| UNIPROTKB|Q9BSJ8 | 1104 | ESYT1 "Extended synaptotagmin- | 0.563 | 0.269 | 0.287 | 5.4e-35 | |
| RGD|3053 | 1088 | Esyt1 "extended synaptotagmin- | 0.540 | 0.262 | 0.293 | 2.1e-33 | |
| MGI|MGI:1344426 | 1092 | Esyt1 "extended synaptotagmin- | 0.540 | 0.261 | 0.293 | 2.5e-33 | |
| MGI|MGI:1098699 | 891 | Esyt3 "extended synaptotagmin- | 0.589 | 0.350 | 0.286 | 2.1e-28 |
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1574 (559.1 bits), Expect = 1.9e-201, Sum P(2) = 1.9e-201
Identities = 297/392 (75%), Positives = 340/392 (86%)
Query: 25 ENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPY 84
EN+RSKLRSELA T+AAFARMTVEDS+K+LP EFYPSWVVFS RQKLTWLNHHL K+WPY
Sbjct: 25 ENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPSWVVFSERQKLTWLNHHLTKIWPY 84
Query: 85 VNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELE 144
V+EAASELIK+SVEPVLEQYRP I++SL FSK TLGTVAPQFTGVS+I+ +G+T+EL+
Sbjct: 85 VDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELD 144
Query: 145 MQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKK 204
MQWD N +I+L +KT +GV+LP+QVKNIGFTGVFRLIFRPLV++FP F AVS SLREKKK
Sbjct: 145 MQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKK 204
Query: 205 LDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTL 264
LDF LKVVGGDIS IPGLS++IE TI DA+EDSITWPVRK++PI+PGDYS+LELKPVG L
Sbjct: 205 LDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGML 264
Query: 265 EVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES 324
EVKLVQAK LTNKDL+GKSDP+A +F+RPL EKTK+SKTINNDLNPIWNEHFEF+VED S
Sbjct: 265 EVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDAS 324
Query: 325 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRGQVHL 384
TQHLVVRIYDDEG+Q+SELIGCAQ+RLCELEPG QRDTK RG+VHL
Sbjct: 325 TQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHL 384
Query: 385 ELLYCPFGMENVFTNPFAPNFSMTSLEKVLTN 416
ELLY P+G N NPF + SMTSLE+VL N
Sbjct: 385 ELLYIPYGSGNGIVNPFVTS-SMTSLERVLKN 415
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.1e-187, Sum P(2) = 1.1e-187
Identities = 289/425 (68%), Positives = 346/425 (81%)
Query: 23 RSENARSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLW 82
R + RS R++LA TIAAFARMTV+DS+K+LP +FYPSWVVFS RQKL WLN LEK+W
Sbjct: 23 RYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYPSWVVFSQRQKLNWLNLELEKIW 82
Query: 83 PYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVT 140
PYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLGTVAPQFTGVSI+E G +G+T
Sbjct: 83 PYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLGTVAPQFTGVSILESESGPNGIT 142
Query: 141 MELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLR 200
MELEMQWD N I+L +KT LGV+LP++VKNIGFTGVFRLIF+PLVDEFP F A+SYSLR
Sbjct: 143 MELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVFRLIFKPLVDEFPCFGALSYSLR 202
Query: 201 EKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKP 260
EKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSITWPVRKI+PILPGDYS+LELKP
Sbjct: 203 EKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSITWPVRKIIPILPGDYSDLELKP 262
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
VG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++TKK+KTI+N LNPIWNEHFEFIV
Sbjct: 263 VGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIV 322
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRG 380
ED STQHL VR++DDEG+ SS+LIG AQV L EL PG QRDTK RG
Sbjct: 323 EDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRG 382
Query: 381 QVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQK 440
QV LELLYCP G E NPF P++S+T LEKVL K + ++A +++K + K
Sbjct: 383 QVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVL-------KPESEDSDATDMKKLVTSK 435
Query: 441 RREVV 445
+++V+
Sbjct: 436 KKDVI 440
|
|
| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 149/373 (39%), Positives = 225/373 (60%)
Query: 28 RSKLRSELATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNE 87
RS R A + ++ +D KKI F P W+ F +++ WLN L K+WPY+ E
Sbjct: 28 RSSKRVAKAVDMKLLGSLSRDDLKKICGDNF-PQWISFPAFEQVKWLNKLLSKMWPYIAE 86
Query: 88 AASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQW 147
AA+ +I+ SVEP+LE YRP ++SLKFSK TLG VAP+ G+ + VTM+++++W
Sbjct: 87 AATMVIRDSVEPLLEDYRPPGITSLKFSKLTLGNVAPKIEGIRVQSFKEGQVTMDVDLRW 146
Query: 148 DANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSL--REKKKL 205
+ +I+L + T L ++P+Q+K++ V R+IF+ L DE P +AV +L K ++
Sbjct: 147 GGDPNIVLGV-TALVASIPIQLKDLQVFTVARVIFQ-LADEIPCISAVVVALLAEPKPRI 204
Query: 206 DFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPI--LPGDYSELELKPVGT 263
D+ LK VGG ++ IPGLSD I+ T+ ++D + WP R +VPI +P D S+LELKP G
Sbjct: 205 DYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDMLQWPHRIVVPIGGIPVDLSDLELKPQGK 264
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V +V+A L NK+LIGKSDPYA +++RP+ + K+K I N+LNP+W++ FE I ED+
Sbjct: 265 LIVTVVKATNLKNKELIGKSDPYATIYIRPVFKY--KTKAIENNLNPVWDQTFELIAEDK 322
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQR--DTKYRGQ 381
TQ L V ++D + + E +G ++ L LE G + D K RG
Sbjct: 323 ETQSLTVEVFDKD-VGQDERLGLVKLPLSSLEAGVTKELELNLLSSLDTLKVKDKKDRGS 381
Query: 382 VHLELLYCPFGME 394
+ L++ Y F E
Sbjct: 382 ITLKVHYHEFNKE 394
|
|
| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 137/477 (28%), Positives = 240/477 (50%)
Query: 60 PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFT 118
P WV ++ WLN + +WPY+++A ++ KS +P++ EQ + + S++F T
Sbjct: 60 PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLT 119
Query: 119 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178
LG++ P F G+ + + MEL ++W N +II+ K G+ VQV ++
Sbjct: 120 LGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATP 178
Query: 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 238
R+ +PLV FP FA + SL +K ++DF LK++G D+ IPGL ++ I D + +
Sbjct: 179 RITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMY 238
Query: 239 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 298
WP V I+ D S+ KPVG L VK+++A L KDL+G SDPY L +
Sbjct: 239 LWPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296
Query: 299 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGX 358
KK+ +++LNP WNE F+ +V++ +Q L + +YD E + + IG ++L +L P
Sbjct: 297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356
Query: 359 XXXXXXXXXXXXXXQRDT--KYRGQVHLELLYCPFGMENVFTNPFAPNF---------SM 407
+ K RGQ+ +E+ Y PF +++ N PN S
Sbjct: 357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPST 416
Query: 408 TSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LH 466
L V+ + + L+ + ++ L +++ + V P W++ F F +++ ++
Sbjct: 417 GGLLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPIN 476
Query: 467 DMLIAEVWDHDT---FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 520
D L EV + K+ +G ++ L V+ D + L +K+G++++ L+W
Sbjct: 477 DKLHVEVISSSSRLIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQW 533
|
|
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 131/438 (29%), Positives = 220/438 (50%)
Query: 43 ARMTVEDSKKILPAEF--YPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPV 100
AR VE S +L P W+ +++ W N + +WPY+++A +I+SSV+P+
Sbjct: 41 ARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPL 100
Query: 101 LEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKT 159
Y F + S++F +LGT+ P GV E + E ++W N +I+L +K
Sbjct: 101 FADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV 160
Query: 160 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 219
L + + VQ+ ++ F + R+ +PL+ FP F V SL EK +DF LKV+GGD+ +I
Sbjct: 161 -LSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSI 219
Query: 220 PGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDL 279
PGL ++ TI + WP +PIL + ++ KPVG L V +++A+ L KDL
Sbjct: 220 PGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDL 278
Query: 280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339
+G SDPY L + KK+ +LNP WNEHF+ IV+D ++Q L + ++D + +
Sbjct: 279 LGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVG 338
Query: 340 SSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDT---KYRGQVHLELLYCPFGMENV 396
+ +G + L ++ PG D+ K RG++ ++L Y PF E++
Sbjct: 339 GHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESI 398
Query: 397 FTNPFA--------PNF-SMTSLEKVLTNGEKAL--KSGANGTEAIELEKDASQKRREVV 445
+ +F S L V K + K + A+ L + +K+ +++
Sbjct: 399 KRRKESREEKSSEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFR-GEKKKTKML 457
Query: 446 NDCLNPIWNQTFDFVVED 463
+P WN+ F F +E+
Sbjct: 458 KKTRDPRWNEEFQFTLEE 475
|
|
| WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 90/310 (29%), Positives = 164/310 (52%)
Query: 44 RMTVEDSKKILPAEFY--PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL 101
R T ++++ A+ P+WV F +++ WLN + +LWPYV E + + P +
Sbjct: 58 RATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQV 117
Query: 102 EQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKT 159
+ P + + KF+K +G + + G+ + G + +++++ + ++ ++
Sbjct: 118 KAQMPGMFKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSCCG 177
Query: 160 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 219
G + NI F+G R I +PL+ P VS + E K+DF L +G ++ +
Sbjct: 178 FTG-----GMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVEL 231
Query: 220 PGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELEL-KPVGTLEVKLVQAKGLTNK 277
PGL D+I + I+ I P +VP+ P D ++L +P G + +K+++AK L N+
Sbjct: 232 PGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENR 291
Query: 278 DLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333
D+ GKSDPYA + V + K++TI++DLNPIWNE+FE +V+ Q L + ++
Sbjct: 292 DISFIKKGKSDPYAEIQVG---SQFFKTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELF 348
Query: 334 DDEGIQSSEL 343
D++ + EL
Sbjct: 349 DEDQGKDEEL 358
|
|
| UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 93/323 (28%), Positives = 161/323 (49%)
Query: 30 KLRSELATTIAAFARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWP 83
++R E ++ A AR ++D +++ Y P+WV F +K WLN + ++WP
Sbjct: 93 RVRDEKERSLRA-ARQLLDDEEQLTAKTLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWP 151
Query: 84 YVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIE-DGGSGVTME 142
++ + +L+ +V P + P L + F++ LG + GV + + ++
Sbjct: 152 FLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTRVELGEKPLRIIGVKVHPGQRKEQILLD 210
Query: 143 LEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
L + + + I + +K A VK + GV R+I PL+ + P AVS +
Sbjct: 211 LNISYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPFVGAVSMFFIRR 267
Query: 203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK- 259
LD + ++ IPGLS + I D+I + P R +VP++P D ++L
Sbjct: 268 PTLDINWTGMT-NLLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPL 326
Query: 260 PVGTLEVKLVQAKGLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
P G + + L+ A+GL++KD LI GKSDPYA+ VR L +T S+ I+ +LNP W
Sbjct: 327 PRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYAL--VR-LGTQTFCSRVIDEELNPQWG 383
Query: 314 EHFEFIVEDESTQHLVVRIYDDE 336
E +E +V + Q + V ++D +
Sbjct: 384 ETYEVMVHEVPGQEIEVEVFDKD 406
|
|
| RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 91/310 (29%), Positives = 155/310 (50%)
Query: 43 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
AR ++D ++I Y P+WV F +K WLN + ++WP++ + +L+ +
Sbjct: 97 ARQLLDDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAET 156
Query: 97 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG-VTMELEMQWDANSSIIL 155
V P + P L + F++ LG + GV + + ++L + + + I +
Sbjct: 157 VAPAVRGANPH-LQTFTFTRVELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDV 215
Query: 156 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 215
+K A VK + GV R+I PL+ + P AVS ++ LD + +
Sbjct: 216 EVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT-N 271
Query: 216 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 272
+ IPGLS + I D+I + P R +VP++P D ++L P G + + L+ A+
Sbjct: 272 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 331
Query: 273 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 326
GL++KD LI GKSDPYA+ VR + +T S+ I+ +LNP W E +E IV + Q
Sbjct: 332 GLSSKDKYVKGLIEGKSDPYAL--VR-VGTQTFCSRVIDEELNPHWGETYEVIVHEVPGQ 388
Query: 327 HLVVRIYDDE 336
+ V ++D +
Sbjct: 389 EIEVEVFDKD 398
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| MGI|MGI:1344426 Esyt1 "extended synaptotagmin-like protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Score = 313 (115.2 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 91/310 (29%), Positives = 154/310 (49%)
Query: 43 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
AR ++D ++I Y P+WV F +K WLN + ++WP++ + +L+ +
Sbjct: 95 ARQLLDDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAET 154
Query: 97 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG-VTMELEMQWDANSSIIL 155
V P + P L + F++ LG + GV + + ++L + + + I +
Sbjct: 155 VAPAVRGANPH-LQTFTFTRVELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDV 213
Query: 156 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 215
+K A VK + GV R+I PL + P AVS ++ LD + +
Sbjct: 214 EVKKYFCKA---GVKGMQLHGVLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT-N 269
Query: 216 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 272
+ IPGLS + I D+I + P R +VP++P D ++L P G + + L+ A+
Sbjct: 270 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 329
Query: 273 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 326
GL++KD LI GKSDPYA+ VR + +T S+ I+ +LNP W E +E IV + Q
Sbjct: 330 GLSSKDKYVKGLIEGKSDPYAL--VR-VGTQTFCSRVIDEELNPHWGETYEVIVHEVPGQ 386
Query: 327 HLVVRIYDDE 336
+ V ++D +
Sbjct: 387 EIEVEVFDKD 396
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| MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 96/335 (28%), Positives = 167/335 (49%)
Query: 28 RSKLRSELATTIAAFARMTVEDS--KKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYV 85
R R +L AAF + E + L + P+W+ F +++ W N + ++WPY+
Sbjct: 77 RRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPYL 136
Query: 86 NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG--VTMEL 143
+ I+ +EP + + + L + F+K G P+ GV + D + VT++L
Sbjct: 137 SMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDL 195
Query: 144 EMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREK 202
++ + + I + + K R GV+ VQ++ G R+I PL+ + P AV+ +K
Sbjct: 196 QICYIGDCEISVELQKIRGGVS-GVQLQ-----GTLRVILEPLLVDKPFIGAVTVFFLQK 249
Query: 203 KKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELELK-P 260
L + ++ +PG+++ ++ + D I + P R VP+ G D + L + P
Sbjct: 250 PHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLP 308
Query: 261 VGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
G + V L++AK L KD L GKSDPYA + + + +S+TI +LNP WNE F
Sbjct: 309 CGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGL---QHCRSRTIYKNLNPTWNEVF 365
Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
EF+V + Q L V +YD++ + +G Q+ L
Sbjct: 366 EFMVYEVPGQDLEVDLYDED-TDKDDFLGSLQICL 399
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L706 | SYT5_ARATH | No assigned EC number | 0.7040 | 0.9981 | 0.9428 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00006418001 | SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (583 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 529 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-35 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-27 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-26 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-25 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-20 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 6e-16 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 9e-16 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-15 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-15 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 5e-15 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 9e-15 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 6e-14 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-13 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 9e-13 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 1e-12 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-12 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-12 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-12 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 8e-12 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 2e-11 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-11 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 5e-11 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 6e-11 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 1e-10 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 1e-10 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-10 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-10 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 3e-10 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-10 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 1e-09 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 1e-09 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-09 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-09 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-09 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 4e-09 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-09 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 8e-09 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-08 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-08 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-08 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 2e-08 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 2e-08 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 5e-08 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 6e-08 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 6e-08 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 6e-08 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 1e-07 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 1e-07 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 2e-07 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 2e-07 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-07 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 5e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 7e-07 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 7e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-06 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 2e-06 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 2e-06 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-06 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 3e-06 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 3e-06 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-06 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 4e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 5e-06 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 6e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 9e-06 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 1e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-05 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 2e-05 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-05 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 3e-05 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 3e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 4e-05 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 4e-05 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 6e-05 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 7e-05 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 9e-05 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 1e-04 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-04 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 2e-04 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 3e-04 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 3e-04 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 3e-04 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 4e-04 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-04 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 5e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 5e-04 | |
| cd08389 | 124 | cd08389, C2A_Synaptotagmin-14_16, C2A domain first | 6e-04 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 6e-04 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 8e-04 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 0.002 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.002 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 0.004 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-35
Identities = 113/502 (22%), Positives = 198/502 (39%), Gaps = 75/502 (14%)
Query: 71 LTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVS 130
+ WLN L+K WP + + S+ + V L + P + +L +FTLG+ P+ G+
Sbjct: 223 VEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIR 282
Query: 131 IIEDGGSGVTMELEMQWDA-------------------NSSIILAIK--TRLGVA-LPVQ 168
S + M D N I L +K G LP+
Sbjct: 283 SYPSTESDT---VVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339
Query: 169 VKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG-----DISTIPGLS 223
V+++ F G R+ L+ ++P VS+ L E + DF L +GG DI IPGLS
Sbjct: 340 VEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDIFAIPGLS 398
Query: 224 DSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELKPVGTLEVKLVQAKGLTNKDLI-- 280
I+ I+ + + P + I + + +G +EVK+ A+GL D
Sbjct: 399 RFIQEIINSTLGPMLLPP--NSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTIN 456
Query: 281 GKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336
G DPY + V K++ N LNP+WNE F +I+ + T L + +YD
Sbjct: 457 GTVDPYITVTFSDRVIG------KTRVKKNTLNPVWNETF-YILLNSFTDPLNLSLYDFN 509
Query: 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ--RDTKYRGQVHLELLYCPFGME 394
+S +++G Q+ L L VK K+ + R+TK G++ +L + P +
Sbjct: 510 SFKSDKVVGSTQLDLALLHQNPVK-------KNELYEFLRNTKNVGRLTYDLRFFPVIED 562
Query: 395 NVFTNPFAP----------NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREV 444
++ ++ + K A + ++ K +
Sbjct: 563 KKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVY-STGKLKFT 621
Query: 445 VNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF 504
+P WN ++ +V D + + +D + + TL +I D F
Sbjct: 622 N----HPSWNLQYNVLVTDRKNSSIKVVTFDVQS--GKVIATEGSTLPDLIDRTL--DTF 673
Query: 505 ELDGTKSGKLKLHLKWMPQPIY 526
+ ++ K ++ + +PIY
Sbjct: 674 LVFPLRNPKGRIFITNYWKPIY 695
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Length = 1227 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-27
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
TL VK++ A+ L KD GKSDPY + + P++ KK+K + N LNP+WNE FEF V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
L + +YD + + IG + L +L G +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
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Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-26
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V +++A+ L KDL GKSDPY + + ++ K+K + N LNP+WNE FEF V D
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKL 366
+ L V ++D + + +G ++ L EL GK ++WL L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
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The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 2e-25
Identities = 33/85 (38%), Positives = 45/85 (52%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V ++ AK L KDL GKSDPY + + + TKK+K + N LNP+WNE F F V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQ 348
L + +YD + + IG
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85
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Length = 85 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 3e-20
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 18/131 (13%)
Query: 262 GTLEVKLVQAKGLTNKDLI------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
G L + +++A+ L KD GKSDPY ++ V +T KSK I +LNP WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEV 57
Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRD 375
+E +V++ Q L + ++D++ + L G + L +E D WL L DV+
Sbjct: 58 YEAVVDEVPGQELEIELFDEDPDKDDFL-GRLSIDLGSVEKKGFIDEWLPLE---DVK-- 111
Query: 376 TKYRGQVHLEL 386
G++HL+L
Sbjct: 112 ---SGRLHLKL 119
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Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 6e-16
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V ++ A+ L + D GKSDP+ ++ EK K+KTI LNP+WNE FE V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
L V +YD + +L+G A + L +LEP + ++ L L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ 104
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 9e-16
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
G L+VK+++A GL D+ GKSDP+ VL + +T TI LNP WN+ F F ++
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQT---HTIYKTLNPEWNKIFTFPIK 57
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
D L V +YD++ + E +G + L ++ G+ K W L KD ++ K G
Sbjct: 58 D-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYAL-KDKKLRTRAK--GS 111
Query: 382 VHLELLY 388
+ LE+
Sbjct: 112 ILLEMDV 118
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-15
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
G L V +V+AK L KD GKSDPYA+L V + K++TI N LNP WN EF
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP 57
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDT 376
+ Q L + ++D + + +G + L E+ D W+ L K + +
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITL-KSTRPGKTS 116
Query: 377 KYRGQVHLEL 386
G++HL+
Sbjct: 117 VVSGEIHLQF 126
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-KKSKTINNDLNPIWNEHFEFIVE 321
L++ L + + L +D G SDPY V F KT KSKTI +LNP+W+E F +E
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPY-VKF--KYGGKTVYKSKTIYKNLNPVWDEKFTLPIE 57
Query: 322 DESTQHLVVRIYD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
D TQ L ++++D D G+ + +G A V L LE K +V LKL
Sbjct: 58 D-VTQPLYIKVFDYDRGLT-DDFMGSAFVDLSTLELNKPTEVKLKLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 5e-15
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V++++A +T DL+ D Y L++ ++ K++KTI N +NP+WNE FEF ++ +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
L + + D++ + L G + +L+ G+ V L
Sbjct: 62 VKNVLELTVMDEDYVMDDHL-GTVLFDVSKLKLGEKVRVTFSL 103
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 9e-15
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
GTLEV L+ AKGL + D +GK DPY ++ R K+K +K + NP WNE F+F VE
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVE 58
Query: 322 D---ESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
L++RI D + + IG A + L
Sbjct: 59 YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 6e-14
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 31/136 (22%)
Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----------------------- 293
P+ L+V +++AKGL KD+ G SDPY +L + P
Sbjct: 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLK 82
Query: 294 --LPEK-TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVR 350
+P K K ++ LNP+WNE F F VED S L + I+D + + +GC +
Sbjct: 83 DTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIP 138
Query: 351 LCELEPGKVKDVWLKL 366
L +L + D W KL
Sbjct: 139 LKDLPSCGL-DSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCI 488
+ L+ D +K++ +VV + LNP+WN+TF+F V L EV+D D FG+D ++G+
Sbjct: 27 VSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVT 86
Query: 489 LTLTRVILEGEYTDC 503
+ L+ ++L G +
Sbjct: 87 IPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 9e-13
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
L V +++A+ L D G SDPY + + +K KK KT LNP++NE F F
Sbjct: 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73
Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGC 346
V E + LV+ + D + + +E+IG
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQ 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-12
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIV 320
GTL V +++A+ L NK + K DPY VL + TKK+KT +P W+E F +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI 57
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYR 379
++ L V ++DD+ + +LIG +V L L+ G+ D W ++ +Y
Sbjct: 58 TEDKKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDD-W------YELTLKGRYA 109
Query: 380 GQVHLELLY 388
G+V+LEL +
Sbjct: 110 GEVYLELTF 118
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-12
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 319
+G L V + A+GL D+IG + DPY + + ++K + NP+WNE +
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYIL 59
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKY 378
V T+ L + +YD + +LIG A+ L L + + +++ ++ R+ K
Sbjct: 60 VNSL-TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKP 112
Query: 379 RGQVHLELLYCP 390
G+++ +L + P
Sbjct: 113 VGELNYDLRFFP 124
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCI 488
+++ QK + +VV + LNP+WN+TF+F V D D L EVWD D F KD ++G
Sbjct: 24 VKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVE 83
Query: 489 LTLTRVILEGEYTD 502
+ L+ ++ G+ +
Sbjct: 84 IPLSELLDSGKEGE 97
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-12
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
L V ++QA L D+ G SDPY +++ LP+K KK +K LNP++NE F F
Sbjct: 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFTFK 73
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
V + + LV +YD + +LIG +V L ++ G V + W L
Sbjct: 74 VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 8e-12
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 441 RREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEY 500
+ +V+ + LNP WN+ ++ VV++ L E++D D D++GR + L V +G
Sbjct: 42 KSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFI 101
Query: 501 TDCFELDGTKSGKLKLHLKW 520
+ L+ KSG+L L L+W
Sbjct: 102 DEWLPLEDVKSGRLHLKLEW 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-----IVEDE 323
V K L L GK D A + R KK++ + N+LNP+WNE FE+ DE
Sbjct: 3 VSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR---G 380
S L + + D E + + LIG A V L +L + +V L+ D+ R
Sbjct: 58 S---LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL-------DSNGRPTGA 107
Query: 381 QVHLELLYCP 390
+ LE+ Y P
Sbjct: 108 TISLEVSYQP 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY + + ++ KK KT LNP +NE F F
Sbjct: 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 320 VEDESTQ--HLVVRIYDDEGIQSSELIG 345
V E Q HL+V + D + I ++ IG
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-11
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
+ LV+ K L D G SDPY V F L + KSK + LNP W E F+ + D+ +
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPY-VKF--RLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60
Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
Q L + ++D + + E IG ++ L L + + L+L
Sbjct: 61 QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-11
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
+++V+A+ L G SDPY L + K++TI + LNP W+E FE V
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD------VWLKLVKDLDVQRDTKYR 379
+ ++D + +L G A ++ L+P + D +WL DLD Q
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLK---LDPKRFGDDGLPREIWL----DLDTQ------ 111
Query: 380 GQVHLE 385
G++ L
Sbjct: 112 GRLLLR 117
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLNPIWNEH 315
L G L + +++A+ L D+ G SDPY L K KK+ N LNP +NE
Sbjct: 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEA 69
Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367
F V E+ + L++ + D + + +ELIG +V G+ ++ W +++
Sbjct: 70 LVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVG--PNADGQGREHWNEML 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
K +G L VKL+QA+ L +D G +DPY + + P TK+SK LNP ++E F F
Sbjct: 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72
Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
V ++ + L V +YD + E IG ++ L E++ + D+W K+
Sbjct: 73 EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFE 317
++ G L + L + L + D G SDP+ LF+ + K+K + LNP+WNE F
Sbjct: 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE--KSVYKTKVVKKTLNPVWNEEFT 1093
Query: 318 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377
V + L + + D + + ++L+G A++ L +LEPG + + LD +
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIP----LDGKTFIV 1149
Query: 378 YRGQVHLELLYCPFGMENV 396
G +H + NV
Sbjct: 1150 LDGTLHPGFNFRSKYALNV 1168
|
Length = 1227 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND--LNPIWNEHFEFIV 320
TLE+ ++ A+ L N +L GK YAV+++ P K+S ++ D NP WNE F +
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPL 57
Query: 321 EDESTQH----LVVRIYDDEGIQSSELIGCAQVRLCEL 354
++ Q L + +Y + +LIG +V L +L
Sbjct: 58 DERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
G L + + +A L N + +GK DPY + V K ++ TI+N LNP+W+E V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPV 57
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
Q + + + D E + +G ++ + +L
Sbjct: 58 TSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-10
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-SKTINNDLNPIWNEHFEFIVED 322
+ + +V A+GL KD G SDPY + V KTKK +KTI +LNP+WNE F F +
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHN 58
Query: 323 ESTQHLVVRIYD-DEGIQS 340
S+ + VR++D D+ I+S
Sbjct: 59 -SSDRIKVRVWDEDDDIKS 76
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-10
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCI 488
+ L ++ +VV + LNP+WN+TF F V L EV+D+D FGKD ++G
Sbjct: 26 VSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V++V A+ L KD G S Y L + K+++T DLNP+WNE F V D
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVEL---DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 324 S---TQHLVVRIYDDE 336
S L V +Y+D
Sbjct: 59 SRLSNLVLEVYVYNDR 74
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEF-- 318
L +++AKGL D G SDPY L + P K K +KT++ NP +NE +
Sbjct: 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75
Query: 319 IVEDE-STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
I E++ + L + + D++ ++ +G ++ L +L+P + K
Sbjct: 76 ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQ 118
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
+G L+V++V+ L +D SDPY VL L + K++ I +LNP+WNE V
Sbjct: 1 LGLLKVRVVRGTNLAVRDFTS-SDPYVVL---TLGNQKVKTRVIKKNLNPVWNEELTLSV 56
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356
+ L + ++D + + +G A++ +LEP
Sbjct: 57 PNPMAP-LKLEVFDKDTFSKDDSMGEAEI---DLEP 88
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE------KTKKSKTINNDLNPIWNEHFE 317
L V+++ A+ L D G SDP+ V LP T K++ L P+++E FE
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVK--VELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75
Query: 318 FIVEDESTQH----LVVRIYDDEGIQSSELIGCAQVRL 351
F V E L+ + D + + S++ G A + L
Sbjct: 76 FNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 4e-09
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V L AK L + PY L V + T+KSK NP+W E F F+V +
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNP 58
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKL 366
Q L + + DD+ +S +G + L EL EP D L
Sbjct: 59 ENQELEIEVKDDKTGKS---LGSLTLPLSELLKEPDLTLDQPFPL 100
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-09
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 269 VQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKT--INNDLNPIWNEHFEFIVEDES 324
+ + L +KD++ KSDP+ V++V+ + +T I N+LNP + F E
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 325 TQHLVVRIYDDEG----IQSSELIGCAQVRLCEL 354
Q L +YD + + + +G A+ L E+
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 437 ASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-GKDYMGRCILTLTRVI 495
A + + + + + LNP WN +F + + +L +WD D F GKDY+G + L V
Sbjct: 34 AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVF 93
Query: 496 LEGE-------YT---DCFELDGTKSGKLKLHLKW 520
+G+ T SG++ L W
Sbjct: 94 ADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 8e-09
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK---KSKTINNDLNPIWNEHFEFIVED 322
V +V+A+ L KD GKSDPY + + K K + I N LNP++ + FE
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLG----KKKINDRDNYIPNTLNPVFGKMFELEATL 59
Query: 323 ESTQHLVVRIYDDEGIQSSELIG 345
L + + D + + S +LIG
Sbjct: 60 PGNSILKISVMDYDLLGSDDLIG 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
L V++ +AK L D G SDPY L + P P+ +K+KTI LNP+WNE F F
Sbjct: 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ D+ + L + ++D + ++ +G + EL D W KL
Sbjct: 73 LKPADKDRR-LSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKL 119
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
TL +K+++A L KD G SDP+ +++ P + ++K +LNP WNE F F E
Sbjct: 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EG 74
Query: 323 ESTQHLVVRI-----YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ L R+ D + ++ IG + L +++ + + W L
Sbjct: 75 FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-08
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 263 TLEVKLVQAKGLTNKDLIGKS--DPYAVLFVRPLP---EKTKKSKTI-NNDLNPIWNEHF 316
TL +K++ + L S DPY + + LP K+K + NN NP+WNE F
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
EF V L +YD++ + +G A + L L G
Sbjct: 63 EFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG 102
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVL---------FVRPLPEKTKKSKTINNDLNPIWNE 314
L VK++ L KD+ G SDPY + + + KT K KT LNP WNE
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KT----LNPKWNE 56
Query: 315 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
F F V + L+ ++D+ + + +G +V L L
Sbjct: 57 EFFFRV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
+ + ++ A GL +DL DP+AV+ V +T + L+P WNEHF+ V
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGPS 59
Query: 324 STQHLVVRIYDDEGIQ--SSELIGCAQVR 350
S + ++++D + + +GC ++R
Sbjct: 60 SI--ITIQVFDQKKFKKKDQGFLGCVRIR 86
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-08
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
+L +++V+ K L KD+ G SDPY + V+ E ++ T+ LNP W E E+ V
Sbjct: 1 SLYIRIVEGKNLPAKDITGSSDPYCI--VKVDNEVIIRTATVWKTLNPFWGE--EYTVHL 56
Query: 323 ESTQH-LVVRIYDDEGIQSSELIG--CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
H + + D++ + ++IG + P + D W+ L + V D + +
Sbjct: 57 PPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI-DGWMNLTE---VDPDEEVQ 112
Query: 380 GQVHLEL 386
G++HLEL
Sbjct: 113 GEIHLEL 119
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHDTFGK-DYMG 485
K+ ++++ + + LNP+WN+TF F ++ D L EVWD D + D+MG
Sbjct: 47 KNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 263 TLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-IV 320
L V L++A+ L + DP+ + + P ++ +SK NP ++E F F +
Sbjct: 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74
Query: 321 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
E + L + +YD + +IG L +L+ K VW L
Sbjct: 75 FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-08
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
+ V +++A+ L D+ G SDPY +++ ++ +K KT+ LNP++NE F F
Sbjct: 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIG 345
+ E + L++ + D + + ++LIG
Sbjct: 75 IPLERLRETTLIITVMDKDRLSRNDLIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 271 AKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFIVED---- 322
K L KD GKSDP+ + R + T +++ I N LNP+W F ++
Sbjct: 9 GKKLDKKDFFGKSDPFLEIS-RQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNG 66
Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361
+ + + + +YD + +LIG + L EL +
Sbjct: 67 DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE 105
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-07
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLP-EKTKKSKTINNDLNPIWNEH 315
L G L V +++AK L D+ SDP+ + V L KTKK+ + ++P +NE
Sbjct: 10 LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69
Query: 316 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 345
F F V E ++ LV +Y S++ IG
Sbjct: 70 FSFKVPQEELENVSLVFTVYGHNVKSSNDFIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 440 KRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE 499
K EV LNP+WN+TF F VED +D L ++WDHD D++G + L + G
Sbjct: 91 KVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCGL 147
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHF-- 316
GTL V ++ AK L D G DPY ++ P P+KT K KT + NP +NE
Sbjct: 13 GTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY 70
Query: 317 -EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
VED + L V ++ + + +E +G + L +L+ + + W L
Sbjct: 71 DGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT----KKSKTINNDL 308
YS K L V + + + L D DPY L++ LP+K+ +K+ ++L
Sbjct: 11 YSSQRQK----LIVTVHKCRNLPPCDSSDIPDPYVRLYL--LPDKSKSTRRKTSVKKDNL 64
Query: 309 NPIWNEHFEFIV--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGK 358
NP+++E FEF V E+ + L V + + + S E L+G + L +L+ K
Sbjct: 65 NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 319
L V +++ L D G SDP+ L+++P K K KT LNP +NE F +
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIG 345
+ D + + L + ++D + +S++ IG
Sbjct: 73 IKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-07
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDF--VVEDGLHDMLI-AEVWDHDTFGK-DYMGRCILT 490
+ S++R + V LNP WNQTF++ V + L + + VWD+D G+ D++G ++
Sbjct: 50 SEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVID 109
Query: 491 LTRVILEGE 499
L +L+ E
Sbjct: 110 LADALLDDE 118
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-07
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L++ + AK L + K DPY + V P KK++ NP WNEHF +V +
Sbjct: 4 LQITVESAK-LKSNSKSFKPDPYVEVTVDGQP--PKKTEVSKKTSNPKWNEHFTVLVTPQ 60
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKL 366
ST +++ +++ L+G A + L ++ GK+++V L L
Sbjct: 61 STLEF--KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTL 104
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK----TINNDLNPIWNEHFE 317
L V ++QA+ L +D +PY +++ LP++++KSK T+ LNP WN+ FE
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYL--LPDRSEKSKRRTKTVKKTLNPEWNQTFE 73
Query: 318 F 318
+
Sbjct: 74 Y 74
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPEKTKKSKTINNDLNPIWNEH--FEFIV 320
L + QA+ L D G SDP+A V F+ ++++++ I L+P W++ F+ +
Sbjct: 3 LRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVE 58
Query: 321 EDESTQHL-------VVRIYDDEGIQSSELIGCAQVR------LCELEPGKVKDVWLKLV 367
S + + VV ++D + + E +G + + L E P K++ W +
Sbjct: 59 LYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ--WFPIY 116
Query: 368 KDLDVQ 373
K
Sbjct: 117 KGGQSA 122
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 263 TLEVKLVQAKGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
+L++K+ +AK L D Y V E+ ++KT+ L P + E F F +
Sbjct: 1 SLKIKIGEAKNLPPRSGPNKMRDCYCT--VNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
+ +HL IYD + ++ +IG ++ +L KD W L V D++ +G+
Sbjct: 59 -RTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQP---VDADSEVQGK 114
Query: 382 VHLEL 386
VHLEL
Sbjct: 115 VHLEL 119
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 437 ASQK-RREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRV 494
+QK + V+ LNP+WN+ V + L EV+D DTF KD MG + L +
Sbjct: 31 GNQKVKTRVIKKNLNPVWNEELTLSVPN-PMAPLKLEVFDKDTFSKDDSMGEAEIDLEPL 89
Query: 495 I 495
+
Sbjct: 90 V 90
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 272 KGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330
KGL T++ G PYA L++ + ++ NP WN EF+V D + V
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTV 58
Query: 331 RIYDDEGIQSSELIGCAQVRLCEL 354
+ DD + ++G + L +L
Sbjct: 59 VVKDD-RDRHDPVLGSVSISLNDL 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 440 KRREVVNDCLNPIWNQTFDF-VVEDGLHDMLIAEVWDHD-TFGKDYMGRCILTLTR 493
KR EV+ + NP WN TFDF VE L EVWD D + D +G C +
Sbjct: 61 KRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEA 116
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
L V++++ + L K G DP+A + + TK++K NP ++E F F +
Sbjct: 1 LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
+ ++E ++ SEL +V L D +L V+
Sbjct: 60 GFSYEKKSFKVEEEDLEKSEL----RVELWHASMV-SGDDFLGEVR 100
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V +++A+ L D + + + +T+ S+T N NP WNE F+ +
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNG--NPSWNEELMFVAAEP 59
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE----PGKVKDVWLKLVKDLDVQRD---T 376
HL++ + D G E +G A + L ++E V W L +
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR 119
Query: 377 KYRGQVHLEL 386
K+ ++HL L
Sbjct: 120 KFASRIHLRL 129
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
+G L V +V+ + L + GKSDPY + + + K+K +++ LNP WN +F V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEV---SMGSQEHKTKVVSDTLNPKWNSSMQFFV 70
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 354
+D L + ++D + + +G ++R+ ++
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADI 104
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 436 DASQKRR----EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILT 490
D + KRR + D LNP W++ F+ V G + A VWD GK D GR L
Sbjct: 30 DTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLK 89
Query: 491 LT 492
L
Sbjct: 90 LD 91
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 322
L +++A+ L KD G SDP+ +F +T ++ + P WNE FEF + +
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELME 57
Query: 323 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
+ L V ++D + + ++ +G + L+ K ++ W +L+ D + + + G
Sbjct: 58 GADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP--DPRAEEESGG 113
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF--IV 320
+L +++++AK L +K G DPY + + + ++KT+ LNP W E F F
Sbjct: 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVE-KLNPFWGEEFVFDDPP 54
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
D + L D +IG +V L +L+ G+ KD W L V D++ +G
Sbjct: 55 PDVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTP---VDPDSEVQG 109
Query: 381 QVHLELLY 388
V L Y
Sbjct: 110 SVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 422 KSGANGTEA-IELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH- 476
K G + A +EL+ D +KR LNP+WN+ F V D + +L V++
Sbjct: 15 KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR 74
Query: 477 -DTFGKDYMGRCILTLTRVILEGE 499
+ ++GR ++ T + E
Sbjct: 75 RSGRRRSFLGRVRISGTSFVPPSE 98
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 440 KRREVVNDCLNPIWNQTFDF---VVEDGLHDML------IAEVWDHDTFGKD-YMGRCI 488
+ EV+ + L+P W+QT F + ++ + E++D D+ GKD ++GR +
Sbjct: 35 QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSV 93
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 248 ILPGDYSELELKPV--GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK--- 302
+ P L+ K G L V + +AK L G SD + ++ LP+K+KKSK
Sbjct: 11 VPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL--LPDKSKKSKQKT 68
Query: 303 -TINNDLNPIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 351
+ +NP+WN F + ED S L + ++D + + S++ +G VRL
Sbjct: 69 PVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGG--VRL 119
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L VK ++A GL+ G S+PY VL + P+K + S N NP W+EHF F +
Sbjct: 1 LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTS-NPFWDEHFLFELSPN 57
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355
S + L+ +YD+ S+ +G A V EL
Sbjct: 58 SKE-LLFEVYDNGKKSDSKFLGLAIVPFDELR 88
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
L V +++A+ L D+ G +DPY + + ++ K KT LNP++NE F F
Sbjct: 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 320 VEDESTQHLVVRI--YDDEGIQSSELIG 345
+ E + + V D + + +E+IG
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 438 SQKRREVV--NDCLNPIWNQTFDFVVED-GLHDM--LIAEVWDHDTF-GKDYMGRCILTL 491
+Q+R+ V D NP WN+ F F VE G LI + D D F D++G + L
Sbjct: 32 TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91
Query: 492 TRVILEG 498
+ EG
Sbjct: 92 KGLFEEG 98
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 451 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL--- 506
P WN+ F+F + +G L EVWD D K D++G+ + ++ + + F L
Sbjct: 45 PRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD 104
Query: 507 ------DGTKSGKLKLHLK 519
G G L+L ++
Sbjct: 105 PRAEEESGGNLGSLRLKVR 123
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-05
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLH--DMLIAEVWDHDTFGKD-YMGRCILTLTRV 494
+K+ V+ + LNP+WN+TF++ + + L V D++ G++ +G ++L +
Sbjct: 26 VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDL 85
Query: 495 ILEGE 499
+ EG
Sbjct: 86 VSEGL 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 262 GTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTK--KSKTI--NNDLNPIWNEHF 316
G+LEV + + + L D +S+PY +++ LP+K+K K KT N NP++NE
Sbjct: 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYL--LPDKSKQSKRKTSVKKNTTNPVFNETL 71
Query: 317 EFIVE 321
++ +
Sbjct: 72 KYHIS 76
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 438 SQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVI 495
++K + +V + LNP W + FD + D +L EVWD DT KD ++GRC + L+
Sbjct: 31 NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSA-- 88
Query: 496 LEGEYTDCFELD 507
L E T EL+
Sbjct: 89 LPREQTHSLELE 100
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 443 EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYT 501
+ + LNP+WN++F+ V + +L EV+D D GK D +G + L+ + E
Sbjct: 37 KTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTE 96
Query: 502 DCFELDGTKSGKLK 515
LDG GKL
Sbjct: 97 LTLPLDGQGGGKLG 110
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 431 IELEKDASQKRRE---VVNDCLNPIWNQTFDFVVEDGLHD----MLIAEVWDHDTFGK-- 481
+ L+ DA +K + V LNP +N+ F + ++ D L VWD D GK
Sbjct: 40 LYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK--HSDLAKKTLEITVWDKD-IGKSN 96
Query: 482 DYMGRCILTLT 492
DY+G L +
Sbjct: 97 DYIGGLQLGIN 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 441 RREVVNDCLNPIWNQTFDFVVED---GLHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVI 495
R EV+ + LNP+W F ++ G +D + EV+D+D+ GK D +G TL ++
Sbjct: 41 RTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99
Query: 496 LEGEYTDCFEL 506
FEL
Sbjct: 100 KSSPLE--FEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 449 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497
LNP+W++ F +ED + L +V+D+D D+MG + L+ + L
Sbjct: 44 LNPVWDEKFTLPIED-VTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELN 92
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDM----LIAEVWDHDTFGK-DYMGRCIL 489
K +K+ + LNP +N++F F V + LI V D+D GK D +G+ +L
Sbjct: 49 KRLKKKKTTIKKRTLNPYYNESFSFEVP--FEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 38/138 (27%)
Query: 262 GTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFV 291
GTL+V + +A L N D+ SDPYA + +
Sbjct: 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66
Query: 292 RPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQV 349
+ ++T I N NP+WNE F ++ H+ + D++ + ++LIG A +
Sbjct: 67 ----AGARVARTRVIENSENPVWNESFHIYCAHYAS-HVEFTVKDNDVV-GAQLIGRAYI 120
Query: 350 RLCELEPGKVKDVWLKLV 367
+ +L G+ + WL ++
Sbjct: 121 PVEDLLSGEPVEGWLPIL 138
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNE-H 315
G L V + +A L D G SDPY F +PL ++ I DLNP+W E
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPL----YSTRIIRKDLNPVWEETW 56
Query: 316 FEFIVEDESTQH--LVVRIYD 334
F + DE L R++D
Sbjct: 57 FVLVTPDEVKAGERLSCRLWD 77
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 449 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494
LNP WN+ F F ++D +HD+L V+D D K +++G+ + L +
Sbjct: 44 LNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI 89
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 434 EKDASQKRREVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLT 492
D+++ + +VV + NP+WN+TF+F V L V+D D+ D++G+ L L
Sbjct: 38 ADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLD 97
Query: 493 R 493
Sbjct: 98 S 98
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 266 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 325
V + A+GL+ +D G +DPY ++ ++ +S + L+P ++ F + +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKPRS 63
Query: 326 QHLVVRIYDD 335
+ +++++
Sbjct: 64 P-IKIQVWNS 72
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEF--IV 320
L V +++A+ + KD G + + V V LP K +++KT + NP++NE F F +
Sbjct: 18 LTVTVIRAQDIPTKDR-GGASSWQVHLVL-LPSKKQRAKTKVQRGPNPVFNETFTFSRVE 75
Query: 321 EDESTQHLV-VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+E + R+Y E ++ LIG V L +L VWL L
Sbjct: 76 PEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 264 LEVKLVQAKGLT---NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
LEV ++ A+GL KD G +D Y V P K +++T+ + NP WNE + + V
Sbjct: 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVEDSSNPRWNEQYTWPV 58
Query: 321 EDESTQHLVVRIYD------DEGIQSSELIGCAQVRLCELEPGKV 359
D T L V ++D E +Q LIG ++RL LE +V
Sbjct: 59 YDPCTV-LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRV 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 437 ASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496
+KR + + + +NP+WN+TF+F ++ + ++L V D D D++G + ++++ L
Sbjct: 34 DEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKL 93
Query: 497 EGEYTDCFELDGTKSGKLKL 516
+ F L+ +L++
Sbjct: 94 GEKVRVTFSLNPQGKEELEV 113
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWDHDTFGKDYMG 485
A++ R + V+ NP +N+T + ED L V D D FG D++G
Sbjct: 48 ASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLG 102
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-I 319
+ TL V +++A GL D +D Y +F + K+++ I N+ NP WN F+F
Sbjct: 27 LATLTVTVLRATGL-WGDYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFDFGS 82
Query: 320 VEDESTQHLVVRIYDDEGIQSSELIG-CAQVRLCELEPGKVKD 361
VE L ++D + +L+G C+ V E G +D
Sbjct: 83 VELSPGGKLRFEVWDRDNGWDDDLLGTCSVV----PEAGVHED 121
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 437 ASQ-KRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGR 486
SQ + +VV+D LNP WN + F V+D D+L V+D D F D++GR
Sbjct: 45 GSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGR 96
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNE 314
P+G + V + +A L N+ GKSDPYA L K +TI ++ LNPIWNE
Sbjct: 709 PIGAIRVSVRKANDLRNEIPGGKSDPYA----TVLVNNLVKYRTIYGSSTLNPIWNE 761
|
Length = 1227 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 437 ASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTF---GKDYMGRCILTL 491
+++++ V D LNP++++TF+F V E+ L V + +F K +G+ ++ L
Sbjct: 52 STRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDL 111
Query: 492 TRVILEGEYTDCFEL 506
+ + L +T ++L
Sbjct: 112 SDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 263 TLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
L V +++ + L D G SDPY L + LPEK K KT + NP+++E F F
Sbjct: 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQL--LPEKEHKVKTRVLRKTRNPVYDETFTF 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.9 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.89 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.86 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.85 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.85 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.84 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.84 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.84 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.84 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.84 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.84 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.83 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.83 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.83 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.82 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.82 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.82 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.82 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.82 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.82 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.82 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.81 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.81 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.8 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.8 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.8 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.8 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.79 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.79 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.79 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.79 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.79 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.78 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.78 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.78 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.78 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.78 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.77 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.77 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.77 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.77 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.77 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.76 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.76 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.76 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.76 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.76 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.75 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.75 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.75 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.75 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.74 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.73 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.73 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.72 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.72 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.72 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.72 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.72 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.71 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.71 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.71 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.71 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.7 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.7 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.7 | |
| PLN03008 | 868 | Phospholipase D delta | 99.7 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.69 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.69 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.68 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.68 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.68 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.68 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.67 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.67 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.67 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.67 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.66 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.66 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.66 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.66 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.66 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.66 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.66 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.65 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.65 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.65 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.64 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.64 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.63 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.63 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.63 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.63 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.63 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.63 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.62 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.62 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.61 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.61 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.61 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.6 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.6 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.6 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.59 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.59 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.59 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.59 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.59 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.58 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.58 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.58 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.57 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.57 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.57 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.56 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.56 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.56 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.56 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.55 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.55 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.55 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.55 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.54 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.54 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.54 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.53 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.53 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.53 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.52 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.52 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.51 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.5 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.5 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.5 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.49 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.49 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.49 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.48 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.48 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.46 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.46 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.46 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.45 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.44 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.43 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.43 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.43 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.43 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.42 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.42 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.4 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.4 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.38 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.38 | |
| PLN03008 | 868 | Phospholipase D delta | 99.37 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.37 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.37 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.37 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.36 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.36 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.36 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.36 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.36 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.35 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.35 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.35 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.34 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.33 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.32 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.31 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.31 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.3 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.3 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.3 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.29 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.28 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.27 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.27 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.26 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.23 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.23 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.22 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.21 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.21 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.21 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.21 | |
| PLN02270 | 808 | phospholipase D alpha | 99.2 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.19 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.18 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.16 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.14 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.13 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.12 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.1 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.1 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.09 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.06 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.96 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.95 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.91 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.91 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.91 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.9 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.9 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.83 | |
| PLN02270 | 808 | phospholipase D alpha | 98.74 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.73 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.71 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.7 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.7 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.68 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.66 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.66 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.64 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.62 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.59 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 98.56 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.52 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.49 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.48 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.47 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.42 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.42 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.36 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.26 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.22 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.15 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.94 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.85 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.83 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 97.82 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 97.81 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.66 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.65 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.32 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.22 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.11 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.87 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.76 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.42 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.01 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 95.91 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.67 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 95.5 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.1 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.88 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 94.22 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.19 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.18 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.81 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.77 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.66 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.44 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 92.78 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.17 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.38 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 90.93 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 89.55 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 88.4 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 88.09 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 87.95 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 87.59 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 87.19 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 85.73 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 85.27 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 84.43 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 84.42 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 83.82 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 83.75 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 80.94 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=480.57 Aligned_cols=444 Identities=25% Similarity=0.407 Sum_probs=362.2
Q ss_pred CCCcchHHHHHHHHHHchhhHHHHHHHHHHhHHHHHhhcCCCccceEEEEEEecCCCCCeEeeEEEEec-CCCeEEEEEE
Q 009664 66 SHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELE 144 (529)
Q Consensus 66 ~~~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~i~~~~~~~~~lG~~~P~i~~i~~~~~-~~~~~~ld~~ 144 (529)
.|+|++||||++|+++||.+++.+++.|.+++|+.|+++.|+||+++.+.+||||++||||.+||.|+. +++.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 589999999999999999999999999999999999999999999999999999999999999999988 7799999999
Q ss_pred EEEec---------------CceEEEEEEe--eec-ceeeEEEEEEEEEEEEEEEEecCCCCCCcceeEEEEeccceeee
Q 009664 145 MQWDA---------------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLD 206 (529)
Q Consensus 145 ~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~v~~~f~~~p~l~ 206 (529)
+++.. ++.|.|.++. .+| .++||.|+++.|.|++|++++ |++.+|++..++++|++.|.+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~d 376 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFD 376 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCccee
Confidence 99962 3557777754 345 789999999999999999999 9999999999999999999999
Q ss_pred EEEEEcc-----cccccCCcchHHHHHHHHHHHhhhcccccccccCCCCCCccccccCcceEEEEEEEEecCCCccC--C
Q 009664 207 FKLKVVG-----GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKD--L 279 (529)
Q Consensus 207 f~l~~~g-----~~~~~~P~l~~~~~~~i~~~i~~~~~~P~~~~ipl~~~~~~~~~~~~~g~L~V~v~~a~~L~~~d--~ 279 (529)
|.++++| .||+++|||+.|++++|...++.|+++|+.+++++..-. ......+.|+|.|+|.+|++|...+ .
T Consensus 377 f~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m-~~~s~~aIGVv~vkI~sa~~lk~~d~~i 455 (1227)
T COG5038 377 FILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM-AGDSGTAIGVVEVKIKSAEGLKKSDSTI 455 (1227)
T ss_pred EEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh-ccccCCeeEEEEEEEeeccCcccccccc
Confidence 9999987 378999999999999999999999999999999764311 1114478999999999999999988 6
Q ss_pred CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCce
Q 009664 280 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 280 ~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~ 359 (529)
.+..|||+.+... +....||++.+++.||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|...+.
T Consensus 456 ~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~ 532 (1227)
T COG5038 456 NGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV 532 (1227)
T ss_pred cCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccc
Confidence 7899999999965 23356999999999999999999999765 56999999999989999999999999999876555
Q ss_pred ee-EEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCC---CCCcch----hhhhhhhcCCcccCCCceEEEEE
Q 009664 360 KD-VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFA---PNFSMT----SLEKVLTNGEKALKSGANGTEAI 431 (529)
Q Consensus 360 ~~-~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~~~~l~v~~~ 431 (529)
.. +-+.+ ..+.+..|+|+..+.|+|..+......... ++.... .+++....+......++.... +
T Consensus 533 ~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~-l 605 (1227)
T COG5038 533 KKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAE-L 605 (1227)
T ss_pred cccceeee------eccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEE-E
Confidence 43 24444 336788899999999999876543322211 111100 001100000011111221111 1
Q ss_pred EEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc-eeeeEEEcCCCC
Q 009664 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG-EYTDCFELDGTK 510 (529)
Q Consensus 432 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~-~~~~w~~L~~~~ 510 (529)
.. ..+..+.|+..+.+.+|.||+.++-.+.+.....+.+.++|.. ..+.+|+...+|.++.... .-..||++. ++
T Consensus 606 ~~-~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~ 681 (1227)
T COG5038 606 YT-NAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NP 681 (1227)
T ss_pred Ee-cceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCceeccccccchHhhhccccceEEEEcC-CC
Confidence 11 3455677888999999999999999999988999999999987 2478999999999988765 458999999 66
Q ss_pred ccEEEEEEEEEeCCC
Q 009664 511 SGKLKLHLKWMPQPI 525 (529)
Q Consensus 511 ~G~i~l~~~~~~~~~ 525 (529)
+|+|.+...|+|++.
T Consensus 682 kg~I~~t~~W~Pi~~ 696 (1227)
T COG5038 682 KGRIFITNYWKPIYN 696 (1227)
T ss_pred cceEEEEeccceeec
Confidence 899999999999865
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=257.94 Aligned_cols=225 Identities=28% Similarity=0.431 Sum_probs=189.1
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v~d 334 (529)
|......|.|+|++|++|+.+|..|.+||||++++.|+...+.+|++.++++||.|||+|.|.+.. ...+.|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 456778999999999999999977889999999999988889999999999999999999999643 356799999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--h
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--K 412 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~ 412 (529)
+|+++++++||++.++|..+........|.++.+.... .....|+|.++++|.|... .+.+..++ .
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p~~g----------~ltv~v~kar~ 309 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLPTAG----------RLTVVVIKARN 309 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeecCCC----------eEEEEEEEecC
Confidence 99999999999999999998777778899999875432 2222389999999998753 33333332 2
Q ss_pred hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee--cCCCCEEEEEEEECCCCCC-CeeEEEEE
Q 009664 413 VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCIL 489 (529)
Q Consensus 413 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i 489 (529)
+...+..+..++|++++++.......++||.+++++.||+|||+|.|.|+ ...+..|.|+|||++.++. ++||.+.+
T Consensus 310 L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~l 389 (421)
T KOG1028|consen 310 LKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCIL 389 (421)
T ss_pred CCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEe
Confidence 33456667788999999988887778899999999999999999999887 3356689999999999987 89999999
Q ss_pred eccc
Q 009664 490 TLTR 493 (529)
Q Consensus 490 ~L~~ 493 (529)
....
T Consensus 390 G~~~ 393 (421)
T KOG1028|consen 390 GSDS 393 (421)
T ss_pred cCCC
Confidence 8885
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=210.92 Aligned_cols=250 Identities=19% Similarity=0.289 Sum_probs=197.6
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
...|.|+|.+|+||+..+..|.+||||.+.+. +....||.++.+++.|.|.|.|+|.+...- +.|.|.|||.| +++
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~ 79 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKR 79 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEeccc-ccc
Confidence 35789999999999999999999999999997 456899999999999999999999996544 58999999999 899
Q ss_pred CceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhh-hcCCc
Q 009664 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL-TNGEK 419 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 419 (529)
|+.||.+.+.=.+|...+..+.|+.|++- +.+....|+|++++.+.+..... ...+..+.... ..-.+
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~~~--------~~~c~~L~~r~~~P~~~ 148 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQSS--------GLVCHVLKTRQGLPIIN 148 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccCCC--------cchhhhhhhcccCceeC
Confidence 99999999999999888889999999753 44678899999999998754321 11233332221 11234
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---------------CCCEEEEEEEEC-CCCC-CC
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KD 482 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~L~i~V~D~-~~~~-~d 482 (529)
+.+++|++|+...... .+.++|+++++|.||.|||.|.|.+... ..-.|.+++||. +... ++
T Consensus 149 ~~~dp~~~v~~~g~~~-~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSK-LKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCcceEEeecccch-hhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 5688999988654433 2347999999999999999999988533 234688889984 4444 48
Q ss_pred eeEEEEEecccccccceeeeEEEcCC----------CCccEEEEEEEEEeCCCC
Q 009664 483 YMGRCILTLTRVILEGEYTDCFELDG----------TKSGKLKLHLKWMPQPIY 526 (529)
Q Consensus 483 ~lG~~~i~L~~l~~~~~~~~w~~L~~----------~~~G~i~l~~~~~~~~~~ 526 (529)
++|++.+++...........||-|.. +.-|.+++.+.++-...|
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vl 281 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVL 281 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceec
Confidence 99999999999887777799999953 245789999998865443
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=171.47 Aligned_cols=119 Identities=24% Similarity=0.454 Sum_probs=103.7
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
.|.|+|+|++|++++..+ .|++||||++.++ +++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 7999999999997 67789999865 89999999999999764 358999999999999
Q ss_pred CCceeEEEEEECc-ccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 340 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 340 ~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+|++||++.+++. .+..+...+.|++|.+. ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~----~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK----QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc----cCCCCceEEEEEEeC
Confidence 9999999999996 57788878999999752 234577999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=165.45 Aligned_cols=119 Identities=21% Similarity=0.477 Sum_probs=103.0
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-----CCCCEEEEEEEECCCC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI 338 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-----~~~~~l~i~v~d~~~~ 338 (529)
++|+|++|+||+.++..|.+||||+++++ +++++|+++++++||+|||+|.|.+.. ...+.|.+.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999997 667899999999999999999999876 3567899999999998
Q ss_pred CCCceeEEEEEECcccC--CCceeeEEEEcccccccccCCccccEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~ 387 (529)
++|++||++.++|+++. .+.....|++|.... ....+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~--~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP--GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC--CCCccccceEEEEeC
Confidence 89999999999999987 566778999997432 123567899999863
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-21 Score=161.82 Aligned_cols=117 Identities=35% Similarity=0.567 Sum_probs=103.0
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
|.|+|+|++|++|+..+..+.+||||+++++ ++.++|+++. ++.||.|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999989999999999997 4677888875 5799999999999998766678999999999875
Q ss_pred CceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
|++||++.+++.++..+...+.|++|.. +++.+|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence 8999999999999877667789999964 34688999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=159.79 Aligned_cols=121 Identities=33% Similarity=0.527 Sum_probs=107.0
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|+|+|++|++|+..|..|.+||||+++++ +...++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 378999999999999988999999999986 23578999999999999999999998765 468999999999998999
Q ss_pred eeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
+||++.+++.++..+...+.|++|... ...+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence 999999999999988889999999642 22467899999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=157.06 Aligned_cols=116 Identities=30% Similarity=0.446 Sum_probs=100.8
Q ss_pred EEEEEEEEecC---CCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 263 TLEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
.|+|+|++|++ |..+|..|.+||||++.++ +++.||+++++++||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 8889999999999999997 67889999999999999999999997754 48999999998863
Q ss_pred ------CCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEE
Q 009664 340 ------SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 384 (529)
Q Consensus 340 ------~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l 384 (529)
+|++||++.+++.++..+...+.|++|.... ....+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 8999999999999999999999999997432 123556788865
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-20 Score=159.48 Aligned_cols=119 Identities=25% Similarity=0.464 Sum_probs=103.3
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.+.|.|+|+|++|++|++.|..|.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.++|||++.+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5789999999999999999989999999999996 6679999999999999999999999877677999999999998
Q ss_pred CCCceeEEEEEECcccCC-----CceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
++|++||++.+++.++.. ......|..+ ..+.+|+|++++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence 899999999999999864 2222344444 46778999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=156.18 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=104.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
+++|+|++|++|+..+..|.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999996 56789999999999999999999998776679999999999988999
Q ss_pred eeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+||++.++++++..+...+.|++|.+ ..|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence 99999999999988888999999953 259999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=155.95 Aligned_cols=109 Identities=22% Similarity=0.370 Sum_probs=93.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEec----CCCCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEEEEC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----LPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD 335 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v~d~ 335 (529)
.|+|+|++|++|+..+ .|.+||||++++.. ...++++|+++++|+||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 49999999999842 22346789999999999999999999974 3345799999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEccccccc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 372 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~ 372 (529)
+..++|++||++.+++.++..+.....|++|.+...+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 9878899999999999999988889999999876543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=156.90 Aligned_cols=116 Identities=27% Similarity=0.537 Sum_probs=103.0
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|+|+|++|++|++.+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975445678999999999999999999998766566899999999988 8999
Q ss_pred eEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
||++.++++++..+.....|++|.+ +.+|++++++..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEEEEe
Confidence 9999999999999999999999952 457998888765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=161.83 Aligned_cols=126 Identities=21% Similarity=0.388 Sum_probs=106.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCC-CCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
.|+|+|++|++|+.++..|.+||||+++++ ++..+|+++.+ ++||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999997 57889998866 69999999999999876667899999999988889
Q ss_pred ceeEEEEEECcccCCC----ceeeEEEEccccccc---ccCCccccEEEEEEEEEEc
Q 009664 342 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~---~~~~~~~G~i~l~l~~~p~ 391 (529)
++||++.++|+++..+ ...+.|++|.+.... .+..+.+|+|+|.+.|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999998643 446899999865321 1234678999999999753
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=154.55 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=93.1
Q ss_pred ccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecC-CCCeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEE
Q 009664 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR 331 (529)
Q Consensus 255 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~ 331 (529)
..+....|.|+|+|++|++|+ . .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+.. .....|.|.
T Consensus 7 L~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 7 LSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred EEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 345577899999999999998 3 467999999999853 3357899999999999999999999864 346689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
|||+|+++++++||++.++++++..+...++|..|
T Consensus 84 V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999999988777777788653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=158.36 Aligned_cols=121 Identities=29% Similarity=0.412 Sum_probs=104.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC---CCEEEEEEEECCCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ 339 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~---~~~l~i~v~d~~~~~ 339 (529)
.|+|+|++|++|+..+..|.+||||+++++ ++.++|+++.++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999997 56789999999999999999999987542 358999999999876
Q ss_pred -CCceeEEEEEECcccC-CCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 340 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 340 -~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.+++||++.++++++. .+.....|++|.+.. ..++.+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence 8999999999999987 567788999997542 1345789999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-20 Score=157.62 Aligned_cols=123 Identities=33% Similarity=0.539 Sum_probs=105.9
Q ss_pred eEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
|+|+|+|++|++|+..+. .+.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999986 56789999999999999999999998766679999999999988
Q ss_pred CCceeEEEEEECcccC---CCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 340 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
++++||++.+++.++. .......|+.|.+... ......+|+|++++.|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence 9999999999999986 3344679999975422 1335578999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=153.24 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCccC-CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 264 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
|.|+|++|+||+..+ ..|.+||||+++++ ....++|+++++|+||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 789999999999874 45789999999995 33468999999999999999999999754 368999999999999999
Q ss_pred eeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+||++.++++++..+...+.|++|++.. ..++.+|+|++++.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence 9999999999998877889999997642 234568999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=154.86 Aligned_cols=105 Identities=27% Similarity=0.462 Sum_probs=94.1
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEE-e--cCCCCEEEEEEEEC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD 335 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v-~--~~~~~~l~i~v~d~ 335 (529)
.|.|.|+|++|++|+.++ .+.+||||++++.+... .+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 689999999999999999 89999999999986543 468999999999999999999987 2 33556899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
+.++++++||++.++|.++..+...+.|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999888778899987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=153.51 Aligned_cols=122 Identities=30% Similarity=0.475 Sum_probs=104.6
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|.|+|++|++|+. ..|.+||||++++. ...+.++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 67899999999986 22456899999999999999999999854 35689999999999889999
Q ss_pred eEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
||++.++++++..+.....|++|.+... .+.+.+|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence 9999999999988888889999975421 235679999999999854
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=154.73 Aligned_cols=121 Identities=24% Similarity=0.486 Sum_probs=105.5
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|+|+|++|++|..++..+.+||||+++++ +...+|++++++.||.|||+|.|.+.+...+.|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999988899999999986 56789999999999999999999998766678999999999988999
Q ss_pred eeEEEEEECcccCCCceeeEEEEccccccc-ccCCccccEEEEEE
Q 009664 343 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL 386 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~~~~~~G~i~l~l 386 (529)
+||++.+++.++..+...+.|+.|.+.... ...++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999877777899999865422 23567789999875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=152.68 Aligned_cols=122 Identities=21% Similarity=0.368 Sum_probs=102.3
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
...|+|+|++|++|+.. +.+||||+++++ +.+..+|++. ++.||.|||+|.|.+.....+.+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999996 2345788874 68999999999998765544689999999999999
Q ss_pred CceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 341 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
|++||++.++|.++..+...+.|++|.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence 999999999999998888889999998642 123567799999999985
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=155.87 Aligned_cols=110 Identities=25% Similarity=0.430 Sum_probs=96.7
Q ss_pred cceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEE-EC
Q 009664 260 PVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD 335 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~-d~ 335 (529)
..|.|.|+|++|+||+.++ ..|.+||||++++.+.+. .++||+++++++||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3689999999999999864 568899999999986554 3789999999999999999999998 56779999999 57
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEccccc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 370 (529)
+.++++++||++.++|+++..+.....|++|.+..
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 88888999999999999998777788999998654
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=153.24 Aligned_cols=115 Identities=35% Similarity=0.634 Sum_probs=101.9
Q ss_pred eEEEEEEEEecCCCccCC------CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~ 335 (529)
|+|+|+|++|++|+..+. .|.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 3689999999997 5789999999999999999999999876678999999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+.. ++++||++.+++.++..+...+.|++|.. ...|+|++++.|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEEEeC
Confidence 987 89999999999999987777889999952 367999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=153.89 Aligned_cols=110 Identities=23% Similarity=0.428 Sum_probs=96.7
Q ss_pred cCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
....+.|.|+|++|+||+.++.. |.+||||++++.+... .+++|+++++++||.|||+|.|.+.. .....|.++|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 45678999999999999999875 8999999999986553 45799999999999999999999864 3456899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||++..+++++||++.++|.++..+.....|++|+
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999999998777788999873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=151.62 Aligned_cols=114 Identities=23% Similarity=0.445 Sum_probs=98.4
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|.|+|++|++|+.+ .+||||+++++ ++..+|++++++.||+|||+|.|.+.+...+.|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 378999999999877 78999999997 5678999999999999999999998776677999999999976 789
Q ss_pred eeEEEEEECcccCCC-----ceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 343 LIGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+||++.++++++... .....|++|.+.. ..+.+|+|++++.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 999999999998542 2356899997642 35788999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=155.89 Aligned_cols=97 Identities=34% Similarity=0.608 Sum_probs=89.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
...|.|+|+|++|.+|..+|..+++||||++.++ +++.||+++++++||+|||.|.|.+.++. ..|.+.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence 4679999999999999999988999999999998 88899999999999999999999999985 5999999999999
Q ss_pred CCCceeEEEEEECcccCCCce
Q 009664 339 QSSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~ 359 (529)
++||+||.++|+|..+.....
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred CcccccceeeeccHHHHHHhh
Confidence 999999999999998865443
|
|
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=152.48 Aligned_cols=111 Identities=34% Similarity=0.546 Sum_probs=99.4
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+.+..|.|.|+|++|++|+.++..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 3456799999999999999999889999999999986666789999999999999999999998643 35689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
++.++++++||++.++++++..+...+.|++|+
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999889999999999999998777889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=151.87 Aligned_cols=111 Identities=18% Similarity=0.323 Sum_probs=97.1
Q ss_pred ccCcceEEEEEEEEecCCCccCC-CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~ 331 (529)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.+. .++||++++++.||.|||+|.|.+... ....|.|.
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34678999999999999998875 47899999999986553 467999999999999999999998642 35689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|||++..+++++||++.++|.++......+.|++|+
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999999999999999999998888899999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=155.12 Aligned_cols=123 Identities=27% Similarity=0.485 Sum_probs=103.5
Q ss_pred ceEEEEEEEEecCCCccC------------------------------CCCCCCcEEEEEEecCCCCeEeccccCCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP 310 (529)
.|+|+|+|.+|++|+++| ..|.+||||+++++ +.+..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence 599999999999999987 24678999999997 2345799999999999
Q ss_pred eeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 311 ~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+|||+|.|.+.+. .+.|.|.|||++..+ +++||++.++++++..+...+.|++|.... .+..+..|+|+++++|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence 9999999998665 468999999999874 689999999999998888889999997542 12334568999999983
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=150.89 Aligned_cols=122 Identities=28% Similarity=0.505 Sum_probs=102.4
Q ss_pred ceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
.|.|+|+|++|++|+..+ ..+.+||||++++... .+.++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 4467999999999732 36789999999999999999999987 44679999999999988
Q ss_pred CCceeEEEEEECcccCCCceee-EEEEcccccccccCCccccEEEEEEEEEE
Q 009664 340 SSELIGCAQVRLCELEPGKVKD-VWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
+|++||++.+++.++..+...+ .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh------cCCccceEEEEEEEeCC
Confidence 9999999999999998766654 344442 25678899999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=146.28 Aligned_cols=118 Identities=33% Similarity=0.584 Sum_probs=102.1
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
|.|+|+|++|++|+..+..+.+||||++++. +...+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999986 5567999999999999999999998664 46899999999988899
Q ss_pred ceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
++||++.+++.++..+. ..|+.|.... ...+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~~---~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDKK---LRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECcccC---CCCceeeEEEEEEEe
Confidence 99999999999987654 5799986432 244578999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=149.45 Aligned_cols=110 Identities=32% Similarity=0.518 Sum_probs=98.6
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEEC
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 335 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~ 335 (529)
....|.|+|+|++|++|+.++..|.+||||++++.+...+.++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 356789999999999999999889999999999987666788999999999999999999998642 346899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+.++++++||++.++++++..+...+.|++|.
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99989999999999999998888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=150.30 Aligned_cols=123 Identities=27% Similarity=0.462 Sum_probs=102.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC----CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.|+|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... .+.|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 389999999999999988999999999997431 1257899999999999999999998654 45899999999999
Q ss_pred CCCceeEEEEEECcccCCCc------eeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEPGK------VKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+++++||++.+++.++..+. ....|++|.+.. ..++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS---SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC---CCCcceeEEEEEEeeC
Confidence 89999999999999986543 246899997532 2456799999999883
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=146.47 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=103.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
|.++|+|+|++|++|...+..|.+||||++.++ ++.++|++++++.||+|||.|.|.+.+. .+.|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999986 6678999999999999999999988765 56899999999876
Q ss_pred CCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 340 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
.|++||++.+++.++.. ....|++|.+... ..+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence 58999999999987643 3446777764332 346788999999998764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-19 Score=148.59 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=96.3
Q ss_pred cccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVV 330 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i 330 (529)
.+.+..+.|.|+|++|+||+..+..|.+||||++++.|+++ .+++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 34567899999999999999998888999999999998773 478999999999999999999998543 4679999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCC-ceeeEEEEc
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL 366 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 366 (529)
.|||++..+++++||++.++|+++... .....||+|
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999999999999999544 346778865
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=151.23 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=90.1
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEe---------------cCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST 325 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~---------------~~~~ 325 (529)
.|+|+|++|++|.. ..|.+||||++++.+.. .+.++|+++++|+||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999997 46899999999998432 24679999999999999999999985 1223
Q ss_pred CEEEEEEEECCCCCCCceeEEEEEECcccCCC-ceeeEEEEccccc
Q 009664 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL 370 (529)
Q Consensus 326 ~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~ 370 (529)
..|.|.|||++..++|++||++.+++.++..+ .....||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999876 5678999997654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=148.30 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=94.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEE-Ee--cCCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VE--DESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~-v~--~~~~~~l~i~v 332 (529)
+....+.|+|+|++|++|+..+.. |.+||||++++.+...++.||++++++.||.|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 345678999999999999998876 899999999998766677899999999999999999993 43 22345799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCC--ceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 367 (529)
||++.+++|++||++.++|+++... .....|++|+
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999998544 6678899885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=147.33 Aligned_cols=110 Identities=20% Similarity=0.404 Sum_probs=94.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~ 331 (529)
+....+.|.|+|++|+||+.++.. |.+||||++++.|..+ .++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 345678999999999999999875 8999999999987653 367999999999999999999998653 35689999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCC---ceeeEEEEc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPG---KVKDVWLKL 366 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 366 (529)
|||++.++++++||++.++|+++... .....||+|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999989999999999999998543 456789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-19 Score=146.47 Aligned_cols=103 Identities=26% Similarity=0.511 Sum_probs=89.5
Q ss_pred eEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~l~i~v~d~~~ 337 (529)
|+|+|+|++|++|+..+.. |.+||||++++.+.+...++|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975445678999999999999999999987543 34689999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+++|++||++.+++.++.. ...|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 9999999999999999873 34577663
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=147.06 Aligned_cols=120 Identities=22% Similarity=0.398 Sum_probs=100.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---------CCCEEEEEEE
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY 333 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------~~~~l~i~v~ 333 (529)
.|+|+|++|++|+.+|..|.+||||+++++ ++.++|++++++.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997 6788999999999999999999975432 1257999999
Q ss_pred ECCCCCCCceeEEEEE-ECcccC---CCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 334 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
|++..++|++||++.+ ++..+. .+.....|++|.+ .+...|+|.+++.+.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence 9999989999999986 444443 3466789999953 35678999999999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=144.31 Aligned_cols=118 Identities=26% Similarity=0.520 Sum_probs=99.5
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|.|+|++|++|.+++..|.+||||+++++ +....+|+++.++.||.|||.|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999986 23357999999999999999999998654 3689999999999999999
Q ss_pred eEEEEEECcccCCC-ceeeEEEEcccccccccCCccccEEEEEEE
Q 009664 344 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL 387 (529)
Q Consensus 344 lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~ 387 (529)
||++.+++.++..+ ...+.|++|.+. .......|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence 99999999888653 346899999653 223457899998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=145.71 Aligned_cols=110 Identities=30% Similarity=0.404 Sum_probs=98.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEE-Eec--CCCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~~l~i~v~ 333 (529)
+....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 44677899999999999999998899999999999877777889999887 999999999998 542 24568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++.++++++||++.++|+++..+.....|++|+
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999999999999999998888899999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-18 Score=140.99 Aligned_cols=100 Identities=31% Similarity=0.413 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|.|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999999888999999999997 578999999999999999999999988767799999999886 78
Q ss_pred eeEEEEEECcccCCCc--eeeEEEEccc
Q 009664 343 LIGCAQVRLCELEPGK--VKDVWLKLVK 368 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~--~~~~~~~L~~ 368 (529)
+||++.++|.++...+ ..+.||+|..
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999999999986543 6789999953
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-18 Score=145.46 Aligned_cols=116 Identities=24% Similarity=0.453 Sum_probs=100.5
Q ss_pred ceEEEEEEEEecCCCccCCC----------CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEE
Q 009664 261 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 330 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i 330 (529)
.|.|+|+|++|++|...+.. |.+||||+++++ +.+..+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 58999999999999988752 579999999997 2345789999999999999999999963 468999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCC--CceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
.|||++..+++++||++.++|.++.. +...+.|++|. +.|+|++++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEec
Confidence 99999988889999999999999876 56789999984 4599999999874
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=143.69 Aligned_cols=117 Identities=31% Similarity=0.454 Sum_probs=101.5
Q ss_pred EEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCCCCceeE
Q 009664 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG 345 (529)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~~d~~lG 345 (529)
|++|++|+. ..|.+||||+++++ +..++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 678999998 67899999999996 5678999999999999999999999754 4678999999999988999999
Q ss_pred EEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 346 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 346 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
++.++++++..+.....|++|.... .....|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCCC
Confidence 9999999999888889999996421 2335799999999998753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-18 Score=143.98 Aligned_cols=118 Identities=26% Similarity=0.533 Sum_probs=98.2
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC--C
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S 341 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~--d 341 (529)
|+|+|++|++|+..+..+.+||||+++++ +.+.++|++++++.||.|||+|.|.+.. .+.|.++|||++..+. |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999995 2567899999999999999999999965 5699999999998765 5
Q ss_pred ceeEEEEEECcccCCCc-eeeEEEEcccccccccCCccccEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
++||++.+++.++.... ....|++|.+... ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence 89999999999986443 3477999854321 22455689998875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=146.28 Aligned_cols=111 Identities=25% Similarity=0.410 Sum_probs=98.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v~ 333 (529)
+....+.|+|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 346678999999999999999988999999999997655677899999999999999999997432 23467999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++..+++++||++.++++++..+...+.|+.|+
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999889999999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-18 Score=144.34 Aligned_cols=106 Identities=25% Similarity=0.476 Sum_probs=91.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~ 336 (529)
..|.|.|+|++|+||+.++ .|.+||||++++.+...+ ++||++++++.||.|||+|.|.+... ....|.+.|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4689999999999999998 789999999999875543 66899999999999999999998543 2347899999998
Q ss_pred CCC-CCceeEEEEEECcccCCCceeeEEEEc
Q 009664 337 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 337 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
... ++++||++.+++.++..+...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999877778899975
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=143.13 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=100.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|+|+|++|++|+..+..+.+||||++++.+...+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58899999999999998899999999997633345689999999999999999999997765678999999999888899
Q ss_pred eeEEEEEECcccCC---CceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 343 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 343 ~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+||++.++|+++.. +...+.|++|. ..|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence 99999999987632 44678999984 258999998886
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=145.42 Aligned_cols=110 Identities=25% Similarity=0.425 Sum_probs=96.4
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....+.|+|+|++|+||+..+..+.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 345679999999999999999988999999999998544 4578999999999999999999998543 456899999
Q ss_pred EECCCC--CCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 333 YDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 333 ~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
||++.+ +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999887888999987
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=143.95 Aligned_cols=109 Identities=20% Similarity=0.445 Sum_probs=95.3
Q ss_pred cCcceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
....|.|+|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 456789999999999999988 678999999999975433 468999999999999999999998653 356899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
||++..+++++||++.++|+++..+...+.||+|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999988999999999999999877778899986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=142.29 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=98.2
Q ss_pred ccCcceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
+....+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 4467789999999999999988 678899999999986666678999999999999999999998653 2357999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++..+++++||++.++|+++........|++|.
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9999888999999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.4e-18 Score=139.15 Aligned_cols=94 Identities=15% Similarity=0.294 Sum_probs=82.2
Q ss_pred eEEEEEEEEecCCCccCCC----CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC-CCEEEEEEEECC
Q 009664 262 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE 336 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~l~i~v~d~~ 336 (529)
|+|.|+|++|++|+..+.. +.+||||+++++ ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999996 66789999999999999999999986543 357999999999
Q ss_pred CCCCCceeEEEEEECcccCCCc
Q 009664 337 GIQSSELIGCAQVRLCELEPGK 358 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~ 358 (529)
..+.|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999986544
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=141.89 Aligned_cols=115 Identities=32% Similarity=0.642 Sum_probs=97.0
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC----
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI---- 338 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~---- 338 (529)
.|+|+|++|++|+..|..|.+||||+++++ ...++|+++.++.||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999986 5678999999999999999999988654 45899999999852
Q ss_pred -------CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEE
Q 009664 339 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 339 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
+.+++||++.+++.++.. ..+.|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence 468999999999998753 357899998643 2456789998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=142.88 Aligned_cols=109 Identities=24% Similarity=0.423 Sum_probs=91.9
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC---CCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~l~i~v 332 (529)
....|.|+|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 35678999999999999999988999999999997533 2567999999999999999999986432 356899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||++..+++++||++.++|++. .......||+|+
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 9999988999999999999983 233456899883
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=144.77 Aligned_cols=103 Identities=39% Similarity=0.709 Sum_probs=90.8
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--------------------------CeEeccccCCCCCCee
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--------------------------KTKKSKTINNDLNPIW 312 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~kT~~~~~t~nP~W 312 (529)
++.+.|.|+|++|++|.++|..|.+||||++++.+... ..++|+++.+++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 68899999999999999999999999999999964321 3478999999999999
Q ss_pred ccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEc
Q 009664 313 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366 (529)
Q Consensus 313 ne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 366 (529)
||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766779999999997 8899999999999883 456899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=138.35 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=89.0
Q ss_pred EEEEEEEecCCCccCC-CCCCCcEEEEEEecCCCCeEeccccCCCCCCee-ccEEEEEEecC--CCCEEEEEEEECCCCC
Q 009664 264 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ 339 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~W-ne~f~~~v~~~--~~~~l~i~v~d~~~~~ 339 (529)
|.|+|++|++|+.++. .|.+||||+++++ ++.++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5899999999998884 6889999999997 47899999999999999 99999998654 3468999999999999
Q ss_pred CCceeEEEEEECcccCC---CceeeEEEEcc
Q 009664 340 SSELIGCAQVRLCELEP---GKVKDVWLKLV 367 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~---~~~~~~~~~L~ 367 (529)
++++||++.+++.++.. +...+.||+|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999866 44578899985
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=138.86 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=98.2
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEe-c-CCCCeEeccccCCCCCCeeccEEEEEEecCC--------CCEEEEE
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDES--------TQHLVVR 331 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--------~~~l~i~ 331 (529)
|.|+|....+.+|+..+..+.+||||++++. + ...++.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4445554444447788777899999999973 3 3456899999999999999999999995432 4579999
Q ss_pred EEECCCC-CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 332 IYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 332 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
|||++.+ ++|++||++.++|+.+........|++|.. ......|+|+++++.-
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence 9999986 579999999999999987777778999853 2345679999999875
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-17 Score=135.75 Aligned_cols=114 Identities=36% Similarity=0.564 Sum_probs=98.6
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|+|+|++|++|+..+..+.+||||++++. +.+.++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999996 2456899999999999999999999987666799999999998889999
Q ss_pred eEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEE
Q 009664 344 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 384 (529)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l 384 (529)
||++.+++.++..+...+.|++|.+. ++...|.+.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEEc
Confidence 99999999999888888999999642 3455666643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=145.46 Aligned_cols=109 Identities=22% Similarity=0.393 Sum_probs=94.8
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEe---cCCCCEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---DESTQHLVVRIY 333 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~---~~~~~~l~i~v~ 333 (529)
.+.|.|.|+|++|++|+..+..|.+||||++++.+.. ..+++|++++++.||.|||+|.|.+. +.....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 4679999999999999999988999999999997543 35789999999999999999999853 223458999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|++.++++++||++.++++++......+.|+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9999989999999999999987766778898874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=164.31 Aligned_cols=297 Identities=23% Similarity=0.370 Sum_probs=201.6
Q ss_pred CCcchHHHHHHHHHHHhhhcccccc-------ccc---CCCC-CC-cc-ccccCcceEEEEEEEEecCCCccCCCCCCCc
Q 009664 219 IPGLSDSIEATIHDAIEDSITWPVR-------KIV---PILP-GD-YS-ELELKPVGTLEVKLVQAKGLTNKDLIGKSDP 285 (529)
Q Consensus 219 ~P~l~~~~~~~i~~~i~~~~~~P~~-------~~i---pl~~-~~-~~-~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dp 285 (529)
++....-+...|.......++.|.+ ++. |+.- +. -+ .....+.|.++|.|..|.++......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4445555567777777777777765 111 3321 11 11 1234789999999999999998888899999
Q ss_pred EEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCC---ceeeE
Q 009664 286 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG---KVKDV 362 (529)
Q Consensus 286 yv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~---~~~~~ 362 (529)
|+++.+. +..++||-....++||.||+..+..+..+. +.+.+++.|++..+.|..+|++.++++++... .....
T Consensus 735 ya~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEec--ceeEEEEecccCccccceeeeEEEEecCCc-cEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999997 356788888899999999999888887764 57999999999999999999999999987431 11111
Q ss_pred EEE---cccccccccCCccccEEEEEEEEEEcccC---------------------------------------------
Q 009664 363 WLK---LVKDLDVQRDTKYRGQVHLELLYCPFGME--------------------------------------------- 394 (529)
Q Consensus 363 ~~~---L~~~~~~~~~~~~~G~i~l~l~~~p~~~~--------------------------------------------- 394 (529)
.+. ....+... +.+.+|++.+.+.|.|..-.
T Consensus 812 ~i~g~~~t~~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~ 890 (1227)
T COG5038 812 TIDGAEETGKLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIE 890 (1227)
T ss_pred eecCcccccccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhccee
Confidence 110 00001001 23456777777777653100
Q ss_pred -----C------------------C---------------------CCC-------------------------------
Q 009664 395 -----N------------------V---------------------FTN------------------------------- 399 (529)
Q Consensus 395 -----~------------------~---------------------~~~------------------------------- 399 (529)
. + ..+
T Consensus 891 v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~ 970 (1227)
T COG5038 891 VEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEY 970 (1227)
T ss_pred eccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhcc
Confidence 0 0 000
Q ss_pred -------------------------------CCCCC--Ccchh----------------h-------------------h
Q 009664 400 -------------------------------PFAPN--FSMTS----------------L-------------------E 411 (529)
Q Consensus 400 -------------------------------~~~~~--~~~~~----------------l-------------------~ 411 (529)
.+... +.... + .
T Consensus 971 s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~ 1050 (1227)
T COG5038 971 SETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGE 1050 (1227)
T ss_pred ceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccC
Confidence 00000 00000 0 0
Q ss_pred hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEe
Q 009664 412 KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILT 490 (529)
Q Consensus 412 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~ 490 (529)
.+...+.++.+++|+++.+ ++++.+||+++++|+||+|||.|+..|.+...+.+.+.|+|++..++ |.||.+.++
T Consensus 1051 nl~~~d~ng~sDpfv~~~l----n~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~id 1126 (1227)
T COG5038 1051 NLPSSDENGYSDPFVKLFL----NEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEID 1126 (1227)
T ss_pred CCcccccCCCCCceEEEEe----cceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcccccccccc
Confidence 0111233445667776654 45568999999999999999999999988888999999999998766 899999999
Q ss_pred cccccccceeeeEEEcCCCC----ccEEEEEEEEEeC
Q 009664 491 LTRVILEGEYTDCFELDGTK----SGKLKLHLKWMPQ 523 (529)
Q Consensus 491 L~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~~~ 523 (529)
|+.+..++..+.-.+|+|.. .|.++....+++.
T Consensus 1127 L~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1127 LSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred HhhcCcCCccceeeeccCcceEecccEeecceecchh
Confidence 99999888878888888753 4566666555553
|
|
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=139.82 Aligned_cols=115 Identities=27% Similarity=0.488 Sum_probs=97.4
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~----~~~l~i~v~d~~~ 337 (529)
+|+|+|++|++|+..+..+.+||||++++++ .+.++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4899999999999998889999999999972 3677888874 6899999999999997763 5789999999998
Q ss_pred CCCCceeEEEEEECcccCCCce-----eeEEEEcccccccccCCccccEEEE
Q 009664 338 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL 384 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~G~i~l 384 (529)
+++|++||++.+++.++..+.. ...|+.|... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence 8889999999999999865443 4689999742 4788898864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=139.01 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=92.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
+.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+ ++||+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44667899999999999999998899999999999865443 5689999999999999999999864 3456899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||+|.++++++||++.++... .+...++|..+..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999999999999997653 4555667776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=134.81 Aligned_cols=101 Identities=22% Similarity=0.375 Sum_probs=85.6
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
.|.|.|+|++|++|+..+ ..||||++.++ +++.+|++.++ .||.|||.|.|.+.+... .|.|+|||++.. .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-C
Confidence 368999999999997654 46899999997 67788998877 599999999999977544 599999999865 8
Q ss_pred CceeEEEEEECcccCCCcee--eEEEEccccc
Q 009664 341 SELIGCAQVRLCELEPGKVK--DVWLKLVKDL 370 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~ 370 (529)
||+||++.++|+++..+... .+||+|.+..
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999998765554 7999998654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=136.01 Aligned_cols=95 Identities=25% Similarity=0.408 Sum_probs=83.2
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-CCCCEEEEEEEECC
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDE 336 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-~~~~~l~i~v~d~~ 336 (529)
.++.|.|+|+|++|++|+. +..+.+||||+++++ +++++|++++++.||+|||+|.|.... ...+.|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3678999999999999984 667889999999996 558999999999999999999997533 34679999999999
Q ss_pred CCCCCceeEEEEEECcccCC
Q 009664 337 GIQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~ 356 (529)
..++|++||++.++|.....
T Consensus 100 ~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCCCeeEEEEEEecCCce
Confidence 99999999999999986553
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-17 Score=135.72 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=89.0
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDF 459 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f 459 (529)
|+|++++.|.|.. ..+.+..+++.... ..+.++||+++++....+ ..++||+++++|.||+|||+|.|
T Consensus 1 ~~l~fsL~Y~~~~----------~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F 68 (118)
T cd08677 1 PKLHYSLSYDKQK----------AELHVNILEAENIS-VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVF 68 (118)
T ss_pred CeEEEEEEEcCcC----------CEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEE
Confidence 5789999998764 23344444332211 345689999999865443 45779999999999999999999
Q ss_pred Eeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEc
Q 009664 460 VVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 506 (529)
Q Consensus 460 ~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L 506 (529)
.++. ..+..|.|+|||+|++++ ++||++.++++++......++|-.|
T Consensus 69 ~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 69 PLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9963 467889999999999987 8999999999998666666788654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=139.53 Aligned_cols=106 Identities=22% Similarity=0.373 Sum_probs=92.9
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecC-CCCeEeccccCCCCCCeeccEEEEEEecC---------------CCCE
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH 327 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~~ 327 (529)
|+|+|++|++|+.+ ..|.+||||++++... ....++|+++.++.||.|||+|.|.+... ..+.
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999732 24678999999999999999999998765 4568
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccccc
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 370 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 370 (529)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999988777789999998654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-17 Score=137.39 Aligned_cols=104 Identities=39% Similarity=0.644 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecC---CCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~---~~~~l~i~v~d~~~ 337 (529)
|.|+|+|++|++|+..+..+.+||||++++. ++.++|+++. ++.||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999986 5567888877 489999999999999876 35689999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++++++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999987777899999865
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=134.35 Aligned_cols=118 Identities=19% Similarity=0.368 Sum_probs=96.3
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC----------CCeEeccccCCCCCCee-ccEEEEEEecCCCCEEEEE
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 331 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~l~i~ 331 (529)
+..|++++|++|+ ++..|++||||++++.+.+ ++.++|+++++++||+| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 7778999999999997544 24789999999999999 9999999853 4689999
Q ss_pred EEECCCCCC---CceeEEEEEECcccCCC---ceeeEEEEcccccccccCCccccEEEEEE
Q 009664 332 IYDDEGIQS---SELIGCAQVRLCELEPG---KVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 332 v~d~~~~~~---d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
|||++..++ +++||++.+++.++..+ .....|++|.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence 999865433 79999999999998644 2366799998654 2566789998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=140.85 Aligned_cols=111 Identities=21% Similarity=0.371 Sum_probs=92.2
Q ss_pred cccCcceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV 329 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~ 329 (529)
.+.+..|.|.|+|++|+||..+|. .+.+||||++++.+.+. .++||+++++++||+|||+|.|.+... ....|.
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE 88 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence 345678999999999999999883 34599999999986543 367999999999999999999998653 356899
Q ss_pred EEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 330 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 330 i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|+|||+|.++++++||++.+++.. .+...++|..+..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999999975 4556667776643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=167.90 Aligned_cols=129 Identities=22% Similarity=0.512 Sum_probs=109.8
Q ss_pred cceEEEEEEEEecCCCccCC------------------------------------------CCCCCcEEEEEEecCCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEK 297 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~ 297 (529)
-.|.|.++|.+|++|+++|. .+++||||++.++ +.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QAT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccc
Confidence 46899999999999886331 2467999999996 244
Q ss_pred eEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 377 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~ 377 (529)
..||++++++.||+|||+|.|.+.++. ..|.|.|||+|.++ +++||++.+|+.++..+...+.|++|....+ +..+
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k 165 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPK 165 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCC
Confidence 679999999999999999999998865 48999999999986 5899999999999999999999999987653 3456
Q ss_pred cccEEEEEEEEEEcccC
Q 009664 378 YRGQVHLELLYCPFGME 394 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~ 394 (529)
..|+|+++++|.|+...
T Consensus 166 ~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 166 AETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCcEEEEEEEEEEcccc
Confidence 67899999999998764
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=132.31 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=88.1
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..|.++||+.+++ .+...++|++++++.||.|||.|+|.+.++....|.|+|+|++..++++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v----~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 9 KTGLLSPYAELYL----NGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA 84 (111)
T ss_pred cCCCCCceEEEEE----CCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh
Confidence 3566789998886 233467999999999999999999999887778899999999988558999999999999765
Q ss_pred c-eeeeEEEcCCCCccEEEEEEEEEeC
Q 009664 498 G-EYTDCFELDGTKSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 ~-~~~~w~~L~~~~~G~i~l~~~~~~~ 523 (529)
+ ...+||+|.+...|+|++++.|+|+
T Consensus 85 ~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhccceeEECCCCCCCEEEEEEEEecC
Confidence 3 4589999998889999999999985
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-17 Score=140.41 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=93.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|.|+|++|++|+..|..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 445679999999999999999988999999999998543 2467999999999999999999998643 346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.+++.. .+...++|+.+.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988899999999999985 4455678988764
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=137.23 Aligned_cols=93 Identities=29% Similarity=0.587 Sum_probs=85.0
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
.|.|+|+|++|++|+..+. +.+||||+++++ ++..+|++++++.||+|||+|.|.+.++ .+.+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 899999999996 6789999999999999999999999877 5689999999999999
Q ss_pred CceeEEEEEECcccCCCc
Q 009664 341 SELIGCAQVRLCELEPGK 358 (529)
Q Consensus 341 d~~lG~~~i~l~~l~~~~ 358 (529)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999986543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=133.76 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=91.1
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
|.|+|+|++|++|+..+..|.+||||+++++ +...++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999995 23568899999999999999999988765 46899999999999999
Q ss_pred ceeEEEEEECcccCCCceeeEEEEccc
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++||++.+++.++..+ ..+.||.|..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999776 5578888864
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=137.72 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=85.6
Q ss_pred EEEEEEEEecCCCccCCCC--------------CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC-CCCE
Q 009664 263 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH 327 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~ 327 (529)
.|.|+|++|++|+.+|..+ .+||||++.++ ++..+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999997 5677999999999999999999997544 3468
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCce-------eeEEEEcc
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLV 367 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~ 367 (529)
|.|+|||+|..++|++||++.+++.++..... ...|+.+.
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 99999999999899999999999999865432 24666663
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=135.78 Aligned_cols=119 Identities=19% Similarity=0.329 Sum_probs=92.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCc-ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEK-ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~-~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
+|+|++++.|.+... .+.+..+++ +...+.. +.++||+++++........++||++++++.||+|||
T Consensus 1 ~G~i~~sl~y~~~~~----------~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE 70 (125)
T cd08393 1 QGSVQFALDYDPKLR----------ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNE 70 (125)
T ss_pred CcEEEEEEEEECCCC----------EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCc
Confidence 699999999986532 223332222 2223333 678999999987765555678999999999999999
Q ss_pred eEEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
.|.|.+.. .....|.++|||++..++ ++||++.++|.++........||+|.
T Consensus 71 ~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 71 TLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999863 356789999999998876 89999999999997776678999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=131.69 Aligned_cols=102 Identities=25% Similarity=0.477 Sum_probs=87.1
Q ss_pred CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCC-C
Q 009664 279 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G 357 (529)
Q Consensus 279 ~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~-~ 357 (529)
.+|.+||||+++++ +...++|++++++.||.|||.|.|.+.+...+.|.|.|||++.+ ++++||++.++|.++.. +
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999996 22467999999999999999999999877667899999999988 89999999999999843 4
Q ss_pred ceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 358 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 358 ~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
...+.|++|.. ...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSG--------NGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCC--------CCCCEEEEEEEEecC
Confidence 45689999952 457999999999873
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=134.86 Aligned_cols=119 Identities=18% Similarity=0.349 Sum_probs=92.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
+|+|++++.|.+... .+.+..+++ +...+ ..+.+++|+++++........++||++++++.||+|||
T Consensus 1 ~G~i~~sl~y~~~~~----------~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE 70 (125)
T cd04029 1 SGEILFSLSYDYKTQ----------SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNE 70 (125)
T ss_pred CcEEEEEEEEECCCC----------eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccc
Confidence 589999999976442 233333322 21222 23678899999987665555678999999999999999
Q ss_pred eEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
+|.|.++.. ....|.|+|||++..++ ++||++.++|.++........||+|.
T Consensus 71 ~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 71 TLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred eEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999642 46689999999998876 79999999999998888889999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=135.99 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=94.6
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhc-CCcccCCCceEEEEEEEccCCeeEeeecccCCCCC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTN-GEKALKSGANGTEAIELEKDASQKRREVVNDCLNP 451 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP 451 (529)
.....|+|++++.|. . ..+.+..+++ +... +..+.++||++++++..+....++||+++++|+||
T Consensus 13 ~~~~~G~l~lsl~y~--~----------~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnP 80 (146)
T cd04028 13 ASPSMGDIQLGLYDK--K----------GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDP 80 (146)
T ss_pred cCCCcceEEEEEEeC--C----------CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCC
Confidence 345679999999993 1 2233333332 2222 23467899999998776555568999999999999
Q ss_pred ccCceEEEEeecCCCCEEEEEEE-ECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 452 IWNQTFDFVVEDGLHDMLIAEVW-DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 452 ~wne~f~f~v~~~~~~~L~i~V~-D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
+|||+|+|.+. ..+..|.|+|| |++.+++ ++||++.|+|+++........||+|.+.
T Consensus 81 vfNE~F~f~v~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 81 LYQQQLVFDVS-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred ccCCeEEEEEc-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 99999999998 67789999999 5776655 8999999999998766677899999864
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-16 Score=133.97 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=93.0
Q ss_pred cccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC---eEeccccCCCCCCeeccEEEEEEec--CCCCEEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVV 330 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i 330 (529)
.+....+.|.|+|++|+||+.++..|.+||||++++.+..++ ++||++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 345678999999999999999998899999999999865432 5799999999999999999999864 34568999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
.|||++.++++++||++.+++..... ...++|..+..
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 99999999999999999998864322 23457877653
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=130.54 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=85.6
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC----CCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~----~~~l~i~v~d~~~ 337 (529)
-.|+|+|++|++|. .|.+||||+++++ +++++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 36899999999998 4789999999998 56789999999999999999999975432 4589999999999
Q ss_pred CCCCceeEEEEEECcccCCC---ceeeEEEEcc
Q 009664 338 IQSSELIGCAQVRLCELEPG---KVKDVWLKLV 367 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~ 367 (529)
+++|++||++.++|+++..+ .....|++|.
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 88899999999999998655 3357899885
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=133.72 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=90.5
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|++++.|.. ..+.+..+ +.+...+ .+.++||+++++........++||++++++.||+|||+|
T Consensus 2 G~l~~~l~y~~------------~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F 68 (122)
T cd08381 2 GQVKLSISYKN------------GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68 (122)
T ss_pred CeEEEEEEEeC------------CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence 88999999871 12222222 2222334 567899999998776555678899999999999999999
Q ss_pred EEEe-e--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 458 DFVV-E--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 458 ~f~v-~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
+|.+ + +.....|.|+|||++.+++ ++||++.++|+++...+....||+|.
T Consensus 69 ~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 69 VYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred EEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 9987 3 3466799999999998876 89999999999998777779999983
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-16 Score=133.85 Aligned_cols=98 Identities=27% Similarity=0.380 Sum_probs=86.2
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC----CCeEeccccCCCCCCeeccEEEEEEecC----CCCEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~l~i 330 (529)
...+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 4568999999999999999888999999999997543 3578999999999999999999998653 3458999
Q ss_pred EEEECCCCCCCceeEEEEEECcccCC
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~ 356 (529)
+|||++..+++++||++.++|+++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999889999999999999863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=130.87 Aligned_cols=96 Identities=19% Similarity=0.341 Sum_probs=81.1
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecc-ccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLT-RVI 495 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~-~l~ 495 (529)
.+.++||+++.+ +.+++||+++.+ +.||+|||.|+|.+.+. ...|.|+|||++.+++ ++||++.+++. .+.
T Consensus 19 ~g~sDPYv~i~l-----g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 92 (121)
T cd04016 19 LTRMDPYCRIRV-----GHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDERIAWTHITIPESVF 92 (121)
T ss_pred CCCCCceEEEEE-----CCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCceEEEEEEECchhcc
Confidence 357889999886 667789999876 79999999999999764 4679999999999986 79999999996 465
Q ss_pred ccceeeeEEEcCC----CCccEEEEEEEE
Q 009664 496 LEGEYTDCFELDG----TKSGKLKLHLKW 520 (529)
Q Consensus 496 ~~~~~~~w~~L~~----~~~G~i~l~~~~ 520 (529)
.....++||+|.+ ...|+|+|+++|
T Consensus 93 ~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 93 NGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 5555799999986 457999999975
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=133.31 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=91.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCC-cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGE-KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
.|+|++++.|.+... .+.+..+ +.+...+. .+.+++|++++++.......++||++++++.||+|||
T Consensus 1 ~G~i~~sl~Y~~~~~----------~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE 70 (128)
T cd08392 1 TGEIEFALHYNFRTS----------CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNE 70 (128)
T ss_pred CcEEEEEEEEeCCCC----------EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccce
Confidence 489999999986542 2222222 22222333 2678999999998776666688999999999999999
Q ss_pred eEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc---ceeeeEEEcC
Q 009664 456 TFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE---GEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~---~~~~~w~~L~ 507 (529)
+|.|.++.. ....|.+.|||.+.+++ ++||++.|+|+++... ....+||+|+
T Consensus 71 ~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 71 TLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 999998643 45799999999998766 8999999999998553 2468999985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=132.73 Aligned_cols=112 Identities=10% Similarity=0.211 Sum_probs=90.2
Q ss_pred ccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCC-CCeeccEEEEEEecCC-CCEEEE
Q 009664 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVV 330 (529)
Q Consensus 255 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~-nP~Wne~f~~~v~~~~-~~~l~i 330 (529)
.++.+..|.|+|+|++|+||++.+..+.+||||++++...+++ ++||+++++|+ ||.|||+|.|.+.... +-.|.+
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 3566788999999999999998765667799999999855443 68899999995 6999999999986532 347889
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+|||++..+++++||++.++.+.. .+...++|..+.
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 999999988999999999999763 333456776654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=137.35 Aligned_cols=110 Identities=29% Similarity=0.485 Sum_probs=91.5
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|+|+|++|++|++.+..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4467899999999999999999999999999999974332 467899999999999999999987542 334799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.+++. ..+...+.|+.+..
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred EECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 99999999999999999987 33455567877653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-16 Score=137.83 Aligned_cols=109 Identities=23% Similarity=0.369 Sum_probs=92.1
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
....+.|.|+|++|++|+..|..|.+||||++++.+.+. .+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 356789999999999999999889999999999975433 257899999999999999999998542 3457999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|++.++++++||++.+++.. .+....+|+.+..
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 99999999999999999988 4555678888753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=132.44 Aligned_cols=110 Identities=30% Similarity=0.449 Sum_probs=92.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|+|+|++|++|+.++..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999999999889999999999974332 467899999999999999999997543 234799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++.+++|++||++.+++... +...++|+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999999999999999999763 445567777753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=130.75 Aligned_cols=125 Identities=18% Similarity=0.327 Sum_probs=99.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
+-...|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|.|.|..... ...+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 55678999999999998754 799999997 23346999999999999999999975443 35799999875532
Q ss_pred ----CCCceeEEEEEECcccCCCceeeEEEEcccccccc-----cCCccccEEEEEEEEEEc
Q 009664 339 ----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 339 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-----~~~~~~G~i~l~l~~~p~ 391 (529)
.++++||.+.|++.++..+...+.||+|....... ......++|+++++|.+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 25789999999999999999999999998654211 012445899999999875
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=133.93 Aligned_cols=110 Identities=23% Similarity=0.395 Sum_probs=91.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
+....|.|.|+|++|++|+..+..|.+||||++++.+.+ ...++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 445679999999999999999988999999999996432 236789999999999999999998753 2346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++.++++++||++.+++.+. +...++|+.+..
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 9999999999999999999875 444567776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=129.02 Aligned_cols=118 Identities=24% Similarity=0.415 Sum_probs=93.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
..|+|+|.+|+ |...+..+.+||||+++++ +...++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 5555557889999999996 2237899999999999999999999854 46899999999999899
Q ss_pred ceeEEEEEECcccCCCc---e--eeEEEEcccccccccCCccccEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL 386 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~~~~~~~~G~i~l~l 386 (529)
++||++.++|.++.... . ...|+++.+.. ....+..|+|.+++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence 99999999999985432 2 23588886432 11346789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-16 Score=132.38 Aligned_cols=92 Identities=28% Similarity=0.398 Sum_probs=80.8
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
+|+|.|++|++|+..|..|.+||||++++++. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 47999999999999998899999999999722 22357888889999999999999987666779999999999998999
Q ss_pred eeEEEEEECcccC
Q 009664 343 LIGCAQVRLCELE 355 (529)
Q Consensus 343 ~lG~~~i~l~~l~ 355 (529)
+||++.+++++..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=136.93 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=93.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v 332 (529)
+....+.|.|+|++|+||+..+ .+.+||||++++.+... .+++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3456789999999999999988 78899999999986533 36789999999999999999999853 3446899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.++......+...++|..+..
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999998999999999999766666666778877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=130.70 Aligned_cols=111 Identities=27% Similarity=0.477 Sum_probs=89.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|+|+|++|++|+..|..|.+||||++++.+... ++++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 3456799999999999999999889999999999864322 457899999999999999999998532 344799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++..+++++||++.+....... ...++|..+..
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999998999999999866533222 23467877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=129.60 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=86.7
Q ss_pred EEEecCCCccCCCCCCCcEEEEEEecCC----CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC----CC
Q 009664 268 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ 339 (529)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~----~~ 339 (529)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999989999999999998543 125899999999999999999998765455689999999997 78
Q ss_pred CCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 340 SSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
++++||++.+++.++..+.....|+.|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999998877788888883
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=130.55 Aligned_cols=98 Identities=15% Similarity=0.342 Sum_probs=82.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeec-----CCCCEEEEEEEECCCCCC-CeeEEEEEe
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFGK-DYMGRCILT 490 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-----~~~~~L~i~V~D~~~~~~-d~lG~~~i~ 490 (529)
+..+.++||+++++ +..++||++++++.||+|||.|+|.+++ +....|.++|||++.+++ ++||++.++
T Consensus 15 d~~g~~dpYv~v~l-----~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~ 89 (126)
T cd08682 15 GKSGTNDAYVIIQL-----GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIP 89 (126)
T ss_pred CCCcCCCceEEEEE-----CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEE
Confidence 44567889999985 4567899999999999999999999976 357789999999998875 899999999
Q ss_pred ccccc--ccceeeeEEEcCCC------CccEEEEEEE
Q 009664 491 LTRVI--LEGEYTDCFELDGT------KSGKLKLHLK 519 (529)
Q Consensus 491 L~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~ 519 (529)
|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 90 l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 90 LNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred HHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99987 34456899999752 4699999874
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-15 Score=125.86 Aligned_cols=114 Identities=31% Similarity=0.512 Sum_probs=89.3
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC--CCEEEEEEEECCCCCCC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~l~i~v~d~~~~~~d 341 (529)
|+|+|++|++|+.. |.+||||+++++ +.+.++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999996 224578999988 99999999999986632 34688888998766566
Q ss_pred ceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
..+|. +++..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence 66665 4555555577789999997542 235678999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=130.03 Aligned_cols=106 Identities=34% Similarity=0.570 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI 338 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~~~ 338 (529)
|.|+|+|++|++|+..+..+.+||||++.+.+.+ ...++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8999999999999998888899999999997432 3578999999999999999999998654 346899999999988
Q ss_pred CCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+++++||++.++++++... ..+.|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999998754 6789999964
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=128.08 Aligned_cols=107 Identities=24% Similarity=0.404 Sum_probs=90.6
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v 332 (529)
....+.|+|+|++|++|++.+..+.+||||++++.+.. ....+|++++++.||.|||+|.|.... ...+.+.|+|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 35568999999999999998888899999999986433 347899999999999999999986322 2346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEE
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLK 365 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 365 (529)
||++.. .+++||++.++++++..+..++.|+.
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999988 89999999999999998877777654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-16 Score=153.50 Aligned_cols=108 Identities=32% Similarity=0.577 Sum_probs=94.8
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~ 336 (529)
....|+|+|.+|+||.++|.+|.||||+++.+-|+++ .+++|++++.++||+|||+|.|.+... .++.|.|+|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3468899999999999999999999999999987554 368999999999999999999998643 3568999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+.+++||+|..++.+++|...+ .+.||.|..
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHHhh
Confidence 9999999999999999987654 568988864
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-15 Score=121.49 Aligned_cols=96 Identities=26% Similarity=0.467 Sum_probs=76.1
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC------
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------ 335 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~------ 335 (529)
|.|+|.+|+||. +.+||||++++.+.+ ....+|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999995 569999999997543 246899999999999999999999964 56999999998
Q ss_pred -CCCCCCceeEEEEEECcc--cCCCceeeEEEEc
Q 009664 336 -EGIQSSELIGCAQVRLCE--LEPGKVKDVWLKL 366 (529)
Q Consensus 336 -~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L 366 (529)
|..+.|+++|++.+.|+. +.....+...+.|
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 456789999888888753 3443334443443
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=127.57 Aligned_cols=96 Identities=28% Similarity=0.481 Sum_probs=85.8
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccce
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE 499 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~ 499 (529)
+.++||+.+++ +.+++||++++++.||.|||.|+|.+.+.....|.|+|||++..++++||++.++|+++..++.
T Consensus 26 g~~dPyv~v~~-----~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~ 100 (121)
T cd08391 26 GKSDPYVIVRV-----GAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGF 100 (121)
T ss_pred CCcCCEEEEEE-----CCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCc
Confidence 56789998885 3478999999999999999999999987677899999999998755899999999999988777
Q ss_pred eeeEEEcCCCCccEEEEEEEE
Q 009664 500 YTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~~~G~i~l~~~~ 520 (529)
..+||+|.+...|+|+|+++|
T Consensus 101 ~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 101 IDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred cceEEECcCCCCceEEEEEeC
Confidence 799999999888999999988
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=127.55 Aligned_cols=100 Identities=19% Similarity=0.363 Sum_probs=85.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||+++++.. ....++||++++++.||+|||.|+|.+.....+.|.|+|||++..++++||++.++++++..+.
T Consensus 18 ~~~~Dpyv~v~~~~--~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~ 95 (119)
T cd04036 18 LSTPDCYVELWLPT--ASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGE 95 (119)
T ss_pred CCCCCcEEEEEEcC--CCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCC
Confidence 45778999888522 2345789999999999999999999997666678999999999885589999999999998877
Q ss_pred eeeeEEEcCCCCccEEEEEEEE
Q 009664 499 EYTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 499 ~~~~w~~L~~~~~G~i~l~~~~ 520 (529)
....||+|.+.++|++++++..
T Consensus 96 ~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 96 KVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEECCCCCCceEEEEEEe
Confidence 8899999999889999998864
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-16 Score=133.19 Aligned_cols=108 Identities=28% Similarity=0.433 Sum_probs=93.7
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCC--CCEEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~l~i~v~d 334 (529)
...+.|.|+|++|++|+..+..+.+||||++++.+... ..++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 45689999999999999988888999999999985433 3579999999999999999999986542 5689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++..+++++||++.+++++ .+...++|++|..
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 9988899999999999998 5666788999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=125.57 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+++.+ .+...+||++++++.||.|||.|.|.+.++ ...|.|+|||++..++ ++||++.++|+++.
T Consensus 16 d~~g~~Dpyv~v~~----~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 16 DRGGTSDPYVKFKY----GGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred CCCCCCCCeEEEEE----CCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcC
Confidence 34467889999875 234678999999999999999999999764 5789999999999865 89999999999998
Q ss_pred ccceeeeEEEcCCC----CccEEEEEEEEEe
Q 009664 496 LEGEYTDCFELDGT----KSGKLKLHLKWMP 522 (529)
Q Consensus 496 ~~~~~~~w~~L~~~----~~G~i~l~~~~~~ 522 (529)
.+...+.|++|.+. ..|+|++.+.++|
T Consensus 91 ~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 91 LNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 88788999999754 3599999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-16 Score=150.24 Aligned_cols=231 Identities=23% Similarity=0.307 Sum_probs=170.9
Q ss_pred ccccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEE--EecC-CCCE
Q 009664 253 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI--VEDE-STQH 327 (529)
Q Consensus 253 ~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~--v~~~-~~~~ 327 (529)
++.++......+..++.+|++|.+++.++..|||+++.+.+.-++ ..+|++..+++||.|+|+-.+. ..+. ....
T Consensus 84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence 344556677889999999999999999999999999999865443 4788899999999999875443 3332 2346
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCceee--EEEEccccc-cc-ccCCccccEEEEEEEEEEcccCCCCCCCCCC
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDL-DV-QRDTKYRGQVHLELLYCPFGMENVFTNPFAP 403 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~--~~~~L~~~~-~~-~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~ 403 (529)
+++.|.|.+.+..++++|+..+++..+.+.+... .|+.-.-.. .. ..+...+|+|.+++.|-... .
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~----------~ 233 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT----------P 233 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCC----------C
Confidence 7899999999999999999999999887655432 232211110 01 11236789999999986432 1
Q ss_pred CCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee--cCCCCEEEEEEEECCCC
Q 009664 404 NFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTF 479 (529)
Q Consensus 404 ~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~D~~~~ 479 (529)
.+-++.++ .+..+++++.+++|++.+.........++||.+.++|.||+||+.|.|.+. +....++.|.|||++..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 12223333 223567889999999999775555567889999999999999999999986 34677899999999987
Q ss_pred CC-CeeEEEEEeccc
Q 009664 480 GK-DYMGRCILTLTR 493 (529)
Q Consensus 480 ~~-d~lG~~~i~L~~ 493 (529)
+. +.+|-+...+..
T Consensus 314 ~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 314 KSNDSIGGSMLGGYR 328 (362)
T ss_pred cCccCCCcccccccc
Confidence 44 888877666544
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=123.15 Aligned_cols=119 Identities=25% Similarity=0.404 Sum_probs=95.9
Q ss_pred EEEEEEEEecCCCccC--CCCCCCcEEEEEEecCC---CCeEeccccCCCC-CCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 263 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~-nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
.|+|+|++|++|+..+ ..+.+||||++++...+ ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999887 57889999999996432 3568999887765 9999999999998766568999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
.. ++++||++.++++++..+. .|++|.... ......|.|.+.+..
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~---~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK---GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC---CCCCcceeEEEEEEE
Confidence 87 8999999999999996653 577775321 123456888887764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-15 Score=124.49 Aligned_cols=97 Identities=29% Similarity=0.453 Sum_probs=85.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+++++ +..++||+++++|.||.|||.|+|.+.+.....|.|+|||++..++ ++||++.++|+++..+
T Consensus 18 ~~~~dPyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~ 92 (116)
T cd08376 18 NGLSDPYVKFRL-----GNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPRE 92 (116)
T ss_pred CCCCCcEEEEEE-----CCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCC
Confidence 457789999885 4567899999999999999999999987767899999999998865 8999999999999887
Q ss_pred ceeeeEEEcCCCCccEEEEEEEEE
Q 009664 498 GEYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 498 ~~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
.....||+|++. .|+|++.+.|.
T Consensus 93 ~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 93 QTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CceEEEEEccCC-CcEEEEEEEec
Confidence 778999999976 59999998774
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=128.71 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=81.6
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhh--hhcC--CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV--LTNG--EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
.|+|.+++.|.|.... +.+..+++. ...+ ..+.+|+|+++++........++||++++++.||+||
T Consensus 1 ~Gel~~sL~Y~~~~~~----------L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfN 70 (138)
T cd08407 1 TGEVLLSISYLPAANR----------LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWN 70 (138)
T ss_pred CCEEEEEEEEeCCCCe----------EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccc
Confidence 4999999999986532 333333221 1122 1234789999998877656678899999999999999
Q ss_pred ceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 455 QTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 455 e~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
|.|.|.++.. .+..|.|+|||++.+++ ++||++.+++..
T Consensus 71 E~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 71 EMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred cEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 9999999743 56789999999999876 899999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-15 Score=123.97 Aligned_cols=94 Identities=20% Similarity=0.321 Sum_probs=79.9
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC-------CCCeeEEEEE
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-------GKDYMGRCIL 489 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~-------~~d~lG~~~i 489 (529)
+..+.++||+.+++ +.++.||++++++.||+|||+|.|.+.++. ..|.|+|||++.. ++++||++.+
T Consensus 19 d~~g~sDPYv~i~~-----g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i 92 (126)
T cd08379 19 DGRGSTDAYCVAKY-----GPKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWKEAVQPDVLIGKVRI 92 (126)
T ss_pred ccCCCCCeeEEEEE-----CCEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCccccccCCCCceEEEEEE
Confidence 44578899998884 667889999999999999999999998744 5899999999886 4589999999
Q ss_pred ecccccccceeeeEEEcCC------CCccEEEE
Q 009664 490 TLTRVILEGEYTDCFELDG------TKSGKLKL 516 (529)
Q Consensus 490 ~L~~l~~~~~~~~w~~L~~------~~~G~i~l 516 (529)
+|+++..+.....||+|.+ .+.|+|++
T Consensus 93 ~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 93 RLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999988888899999983 24577664
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-15 Score=126.85 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=88.3
Q ss_pred EEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccC-CeeEeeecccCCCCCccCceE
Q 009664 381 QVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKD-ASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 381 ~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~kT~v~~~t~nP~wne~f 457 (529)
+|++++.|.+.... +.+..++ .+...+..+.+++|++++++..... ..++||++++++.||+|||+|
T Consensus 2 ~i~~sL~Y~~~~~~----------L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F 71 (124)
T cd08680 2 QVQIGLRYDSGDSS----------LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVF 71 (124)
T ss_pred eEEEEEEECCCCCE----------EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEE
Confidence 57888888765422 2222222 2222244567889999999887654 458899999999999999999
Q ss_pred EEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc-eeeeEEEc
Q 009664 458 DFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG-EYTDCFEL 506 (529)
Q Consensus 458 ~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~-~~~~w~~L 506 (529)
+|.++. ..+..|.++|||++..++ ++||++.|+|+++.... ...+||+|
T Consensus 72 ~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 72 RVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999963 367899999999998766 89999999999995554 46889986
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=125.95 Aligned_cols=88 Identities=16% Similarity=0.289 Sum_probs=74.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCC--CCeeEEEEEeccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFG--KDYMGRCILTLTRVI 495 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~--~d~lG~~~i~L~~l~ 495 (529)
.+.++||+++++........++||++++++.||+|||+|.|.+... ....|.|+|||++..+ +++||++.|+|.++.
T Consensus 29 ~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 29 SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 4678899999988776666778999999999999999999998643 3457999999998764 379999999999998
Q ss_pred ccceeeeEEEc
Q 009664 496 LEGEYTDCFEL 506 (529)
Q Consensus 496 ~~~~~~~w~~L 506 (529)
..+..++||.|
T Consensus 109 ~~~~~~~Wy~l 119 (119)
T cd08685 109 NQKEISGWYYL 119 (119)
T ss_pred cCccccceEeC
Confidence 66667999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-15 Score=126.68 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=91.8
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
+.|+|.+++.|.+... .+.+..+ +.+...+..+.+++|+++++........++||++++++.||+|||
T Consensus 1 ~~G~l~~~l~y~~~~~----------~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne 70 (127)
T cd04030 1 PLGRIQLTIRYSSQRQ----------KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDE 70 (127)
T ss_pred CCeEEEEEEEEeCCCC----------EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECe
Confidence 4699999999986432 1222222 222223345678899999987655556789999999999999999
Q ss_pred eEEEEeec--CCCCEEEEEEEECCCC--CC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVVED--GLHDMLIAEVWDHDTF--GK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v~~--~~~~~L~i~V~D~~~~--~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
.|.|.+.. .....|.+.|||++.+ ++ ++||++.++|+++.......+||+|.
T Consensus 71 ~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 71 TFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99999863 3457899999999875 34 89999999999997777779999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-15 Score=125.07 Aligned_cols=98 Identities=20% Similarity=0.351 Sum_probs=82.5
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++.+ +..++||+++++ +.||+|||.|.|.+..+..+.|.|+|||++..++++||++.++++++..
T Consensus 18 ~~~~~dpyv~v~~-----~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~ 92 (118)
T cd08681 18 KLDKQDPYCVLRI-----GGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALK 92 (118)
T ss_pred cCCCCCceEEEEE-----CCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhh
Confidence 3456789999875 336788998765 7899999999999987667899999999998777899999999999877
Q ss_pred cceeeeEEEcCCC--CccEEEEEEEE
Q 009664 497 EGEYTDCFELDGT--KSGKLKLHLKW 520 (529)
Q Consensus 497 ~~~~~~w~~L~~~--~~G~i~l~~~~ 520 (529)
.....+||+|.+. ..|+|+|+++|
T Consensus 93 ~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 93 EGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred cCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 6667999999853 57999999976
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-15 Score=125.90 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=89.9
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|++++.|.+... .+.+..+ +.+...+..+.++||+++++... +..++||++++++.||+|||.
T Consensus 2 ~G~l~~sl~y~~~~~----------~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~~P~wne~ 69 (124)
T cd08387 2 RGELHFSLEYDKDMG----------ILNVKLIQARNLQPRDFSGTADPYCKVRLLPD--RSNTKQSKIHKKTLNPEFDES 69 (124)
T ss_pred CCEEEEEEEECCCCC----------EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC--CCCcEeCceEcCCCCCCcccE
Confidence 699999999976431 1222222 22223344567889999987433 345789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.++|+++...+..+.||+|+
T Consensus 70 f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 70 FVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99998643 45689999999998865 89999999999998777889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.6e-15 Score=130.94 Aligned_cols=131 Identities=24% Similarity=0.369 Sum_probs=97.1
Q ss_pred ccEEEEEEEEEEcccCCCCC--CCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 379 RGQVHLELLYCPFGMENVFT--NPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
+|+|.+++.|.|........ ......+.+..++ .+...+..+.++||+++++.....+..++||++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 58999999999866432211 1112233333332 2223344567899999998766666678999999999999999
Q ss_pred ceEEEEee---cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 455 QTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 455 e~f~f~v~---~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.|.+. +..+..|.|+|||++.+++ ++||++.++++++...+....||+|.+.
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 99999853 2345689999999999875 8999999999999877777889988763
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=125.25 Aligned_cols=98 Identities=26% Similarity=0.486 Sum_probs=85.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++++ +..++||++++++.||.|||.|+|.+.++..+.|.|+|||++.+++ ++||++.++|+++..
T Consensus 32 ~~g~~DPYv~v~~-----~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 32 SNGKSDPYCEVSM-----GSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCcCcEEEEEE-----CCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 3457889998885 4567999999999999999999999988777899999999998875 899999999999986
Q ss_pred -----cceeeeEEEcCCCCccEEEEEEEE
Q 009664 497 -----EGEYTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 497 -----~~~~~~w~~L~~~~~G~i~l~~~~ 520 (529)
...+.+|.+|.+...|+|+|++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 107 ETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred ccccCCCcEEEEeccccccceeEEEEEEe
Confidence 334578999998889999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=125.02 Aligned_cols=97 Identities=26% Similarity=0.497 Sum_probs=83.2
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc-
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL- 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~- 496 (529)
.+.++||+.+++ +..++||++++++.||.|||.|+|.+.++....|.|+|||++..++ ++||++.++|+++..
T Consensus 21 ~~~~dPyv~v~~-----~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~ 95 (128)
T cd04024 21 KGKSDPYAILSV-----GAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFAD 95 (128)
T ss_pred CCCcCCeEEEEE-----CCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcc
Confidence 456789998774 4567899999999999999999999987667899999999998865 899999999999874
Q ss_pred --cceeeeEEEcCCC-------CccEEEEEEEE
Q 009664 497 --EGEYTDCFELDGT-------KSGKLKLHLKW 520 (529)
Q Consensus 497 --~~~~~~w~~L~~~-------~~G~i~l~~~~ 520 (529)
.+...+||+|++. ..|+|+|++.|
T Consensus 96 ~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 96 GKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cccCccceeEEccCcccCccccccceEEEEEEC
Confidence 2335899999865 58999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=122.40 Aligned_cols=95 Identities=22% Similarity=0.369 Sum_probs=81.1
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc--
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG-- 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~-- 498 (529)
.++||+++++ +..+.||++++++.||+|||.|+|.+.++....|.++|||++..++++||++.++|+++..+.
T Consensus 16 ~~Dpyv~v~l-----~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~ 90 (121)
T cd08378 16 SNDPVVEVKL-----GNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPP 90 (121)
T ss_pred cCCCEEEEEE-----CCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCC
Confidence 5679999885 335789999999999999999999998777789999999999876699999999999987543
Q ss_pred ---eeeeEEEcCCCC----ccEEEEEEEE
Q 009664 499 ---EYTDCFELDGTK----SGKLKLHLKW 520 (529)
Q Consensus 499 ---~~~~w~~L~~~~----~G~i~l~~~~ 520 (529)
...+||+|.+.. .|+|+|.++|
T Consensus 91 ~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 91 DSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred CCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 247999998643 6999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=127.10 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=85.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
+..+.++||+++.+ +.+++||+++.+ +.||+|||.|+|.+.++..+.|.|+|+|++..++ ++||++.++|+++
T Consensus 16 d~~g~sDPYV~v~l-----~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l 90 (150)
T cd04019 16 DKNRVPEVFVKAQL-----GNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCCCCCeEEEEEE-----CCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHC
Confidence 44568889999886 447889999876 6999999999999987767899999999998754 8999999999998
Q ss_pred ccc----ceeeeEEEcCCCC-----------ccEEEEEEEEEeCC
Q 009664 495 ILE----GEYTDCFELDGTK-----------SGKLKLHLKWMPQP 524 (529)
Q Consensus 495 ~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~~~~ 524 (529)
... ....+||+|.+.. .|+|+|++.+.+..
T Consensus 91 ~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 91 ERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred cccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 653 2358999998643 39999999988654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=123.91 Aligned_cols=117 Identities=19% Similarity=0.364 Sum_probs=88.3
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
|+|++++.|.+... .+.+..++ .+...+ ..+..+||+++++........++||++++++.||.|||+
T Consensus 1 G~i~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~ 70 (123)
T cd08521 1 GEIEFSLSYNYKTG----------SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNET 70 (123)
T ss_pred CeEEEEEEEeCCCC----------EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccce
Confidence 78888888865432 22222222 122222 345788999999865544446789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEc
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 506 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L 506 (529)
|.|.+... ....|.|+|||++..++ ++||++.++|+++........||+|
T Consensus 71 f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 71 LKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99998643 45689999999998876 8999999999999777777999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=168.02 Aligned_cols=121 Identities=14% Similarity=0.294 Sum_probs=104.3
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC-CCEEEEEEEECCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG 337 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~l~i~v~d~~~ 337 (529)
.-.|.|+|+|++|+||. +..|.+||||++.++. +++.||++++++.||+|||.|+|.+.++. ++.+.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 35699999999999998 4468999999999982 44679999999999999999999998875 4679999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccE---EEEEEEEEE
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP 390 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~---i~l~l~~~p 390 (529)
+++ +.+|.+++++.++..+.....||+|.+ +++..|+ |++++.|.+
T Consensus 2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCC-CCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence 854 589999999999998888999999963 3456677 999999864
|
|
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=123.76 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=89.4
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|.+++.|.+... .+.+..+ +.+...+..+.++||+++++... ..+++||++++++.||+|||.
T Consensus 2 ~G~l~~~l~y~~~~~----------~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~ 69 (124)
T cd08385 2 LGKLQFSLDYDFQSN----------QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNET 69 (124)
T ss_pred ccEEEEEEEEeCCCC----------EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC--CCCceecccCcCCCCCceeee
Confidence 589999999975432 1222222 22222344567889999997543 335789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|+|.+... ....|.|+|||++.+++ ++||++.++|+++......++|++|+
T Consensus 70 f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 70 FTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99998642 45689999999998866 89999999999997777779999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=124.37 Aligned_cols=118 Identities=23% Similarity=0.435 Sum_probs=87.2
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|.+++.|.+... .+.+..+ +.+...+..+.++||+++++........++||++++++.||+|||.
T Consensus 2 ~G~l~~~l~~~~~~~----------~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 71 (125)
T cd04031 2 TGRIQIQLWYDKVTS----------QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQT 71 (125)
T ss_pred cEEEEEEEEEeCCCC----------EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccE
Confidence 589999999986432 1222222 2222234456788999999865544456789999999999999999
Q ss_pred EEEEeec---CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVED---GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~---~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|+|.+.. .....|.|+|||++..++ ++||++.++|++.. ......||+|+
T Consensus 72 f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 72 FEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred EEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 9998632 246789999999998766 89999999999943 33347899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=119.06 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=77.1
Q ss_pred EEEEecCCCccCCCCCCCcEEEEEEecCC---CCeEeccccCCCCCCeeccEEEEEEecCC----CCEEEEEEEECCCCC
Q 009664 267 KLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGIQ 339 (529)
Q Consensus 267 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~~~----~~~l~i~v~d~~~~~ 339 (529)
-.++|++|+..|..|.+||||++++.+.. ...++|+++++++||+|| +|.|...+.. .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34689999999999999999999987432 235899999999999999 6888764332 568999999999999
Q ss_pred CCceeEEEEEECcccCCCce
Q 009664 340 SSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~ 359 (529)
+|++||++.++++++..+..
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSP 103 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCC
Confidence 99999999999999875443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-14 Score=120.12 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=86.3
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+.+++ ....+++||+++++|.||+|||.|.|.+.. ....|.|+|||++..++ ++||++.++++++..
T Consensus 14 ~~g~~dpyv~v~~---~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~ 89 (126)
T cd08678 14 AAGSSNPYCVLEM---DEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFLGLAIVPFDELRK 89 (126)
T ss_pred CCCCcCCEEEEEE---CCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceEEEEEEeHHHhcc
Confidence 3457889999885 222456899999999999999999999864 46789999999999875 899999999999998
Q ss_pred cceeeeEEEcCCC------CccEEEEEEEEEeC
Q 009664 497 EGEYTDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 497 ~~~~~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
.+...+||+|.+. ..|+|++++.|.+.
T Consensus 90 ~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 90 NPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 8777899999843 58999999999864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=120.33 Aligned_cols=96 Identities=17% Similarity=0.271 Sum_probs=81.1
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+.+++ .+...+||+++++|.||.|||.|+|.+.+. ...|.|.|||++.+++ ++||.+.++++++....
T Consensus 20 g~sDpYv~v~l----~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 94 (121)
T cd08401 20 KMRDCYCTVNL----DQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYY 94 (121)
T ss_pred CCcCcEEEEEE----CCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCC
Confidence 46789999876 233468999999999999999999999853 4689999999999866 89999999999998777
Q ss_pred eeeeEEEcCCC-----CccEEEEEEEE
Q 009664 499 EYTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 499 ~~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
..+.||+|+.. ..|+|+|++.+
T Consensus 95 ~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 95 GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 77999999853 37999998753
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=119.71 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=74.9
Q ss_pred ccCCCceEEEEEEE--ccCCeeEeeecccCCCCCccCceEEEEeec---CCCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 420 ALKSGANGTEAIEL--EKDASQKRREVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 420 ~~~~~~l~v~~~~~--~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
|.++||++|+++.. ....+++||+++.+|.||+|||+|+|.+.+ +....|.|.|||++..++ ++||++.++|++
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 67889999998642 223346799999999999999999999973 345679999999987765 799999999999
Q ss_pred ccccceeeeEEEcCC
Q 009664 494 VILEGEYTDCFELDG 508 (529)
Q Consensus 494 l~~~~~~~~w~~L~~ 508 (529)
+..++....|++|..
T Consensus 98 ~~~~~~~~~w~~L~~ 112 (120)
T cd08395 98 IAQAGSCACWLPLGR 112 (120)
T ss_pred CcCCCcEEEEEECcC
Confidence 998888899999975
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-15 Score=127.59 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=88.5
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|.++++|.|.... +.+..++ .+...+..+.+++|++++++.......++||++++++.||+|||+|
T Consensus 2 G~i~~sL~Y~~~~~~----------L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f 71 (136)
T cd08406 2 GEILLSLSYLPTAER----------LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAM 71 (136)
T ss_pred cEEEEEEEEcCCCCE----------EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeE
Confidence 899999999876432 2332222 2223345677899999999876555567899999999999999999
Q ss_pred EEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 458 DFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 458 ~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
.|.++. ..+..|.|+|||++..++ ++||++.|+.... ....++|..+..+
T Consensus 72 ~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~~ 124 (136)
T cd08406 72 IFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLAS 124 (136)
T ss_pred EEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHHC
Confidence 999964 367889999999998876 8999999987642 3334566666544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-14 Score=119.62 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=81.4
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+++.+ .+.++.||+++ ++.||.|||.|.|.+..+....++|.|||++..++ ++||++.++|+++...+
T Consensus 20 ~~~DPYv~v~l----~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~ 94 (126)
T cd08400 20 HVPHPYCVISL----NEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQ 94 (126)
T ss_pred CCCCeeEEEEE----CCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCC
Confidence 35689999886 23345688874 58999999999998765555689999999998876 79999999999998877
Q ss_pred eeeeEEEcCCC------CccEEEEEEEEEeC
Q 009664 499 EYTDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 499 ~~~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
..+.||+|.+. ..|+|+|++.|.+.
T Consensus 95 ~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 95 ETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred cccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 78999999753 34999999999874
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=120.67 Aligned_cols=117 Identities=9% Similarity=0.123 Sum_probs=84.1
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCC-CCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCL-NPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~-nP~wne~ 456 (529)
.+|.++|+|.|.... +.+..+++ +.....++..++|++|.+...+....++||+++++|. ||+|||+
T Consensus 1 ~el~~sL~Y~p~~~r----------LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEs 70 (135)
T cd08692 1 AELQLGTCFQAVNSR----------IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGET 70 (135)
T ss_pred CeEEEEeeecCcCCe----------EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecce
Confidence 378999999987643 33333222 1112234456799999998887777899999999995 6999999
Q ss_pred EEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|.|.|+.. .+..|.|+|||++..++ ++||++.++.++.. ....++|.+..
T Consensus 71 F~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 71 MIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 99999754 34578999999988765 89999999998632 12234554443
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=121.72 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=89.1
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|++++.|.+... .+.++.+++ +...+..+..++|+++.++.. ..+++||+++++ .||+|||+
T Consensus 2 ~G~l~~sl~Y~~~~~----------~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~--~~~~~kTkv~~~-~nP~fnE~ 68 (124)
T cd08389 2 CGDLDVAFEYDPSAR----------KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS--KKQRAKTKVQRG-PNPVFNET 68 (124)
T ss_pred CEEEEEEEEECCCCC----------EEEEEEEEecCCCchhcCCCCCcEEEEEEccC--CcceeecccccC-CCCcccCE
Confidence 599999999986542 233333322 222334566778998776554 346789999887 99999999
Q ss_pred EEEE-ee--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 457 FDFV-VE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 457 f~f~-v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|.|. ++ +..+..|.++|||++.+++ ++||++.++|+++...+....||+|++
T Consensus 69 F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 69 FTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred EEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9998 64 3357789999999998875 899999999999977777899999973
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-15 Score=144.01 Aligned_cols=128 Identities=22% Similarity=0.373 Sum_probs=103.6
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
....+|+|.+++...... ..+.+...+++...+.+|.++||+++.+........++||++++.++||+||
T Consensus 164 htE~RGrl~l~~~~~~~~----------l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wN 233 (683)
T KOG0696|consen 164 HTERRGRLYLEAHIKRDV----------LTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWN 233 (683)
T ss_pred chhhcceEEEEEEecCce----------EEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccc
Confidence 456789999988764110 1112233445667889999999999999998888899999999999999999
Q ss_pred ceEEEEeec-CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccE
Q 009664 455 QTFDFVVED-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 513 (529)
Q Consensus 455 e~f~f~v~~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 513 (529)
|+|+|.+.. ..+..|.|+|||+++-+. |+||++++.++++...+ .+.||.|-....|+
T Consensus 234 Etftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 234 ETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred ceeEEecccccccceeEEEEecccccccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 999999853 367789999999998776 99999999999987654 48999998877675
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=121.85 Aligned_cols=99 Identities=21% Similarity=0.347 Sum_probs=81.8
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---CCCEEEEEEEECCCCC--CCeeEEEEEecc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFG--KDYMGRCILTLT 492 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~--~d~lG~~~i~L~ 492 (529)
..+.++||+++++ +.+++||++++++.||+|||.|.|.+.++ ....|.|+|||++.++ +++||++.++++
T Consensus 17 ~~g~~dpyv~v~~-----~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~ 91 (127)
T cd04022 17 GQGSSSAYVELDF-----DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGT 91 (127)
T ss_pred CCCCcCcEEEEEE-----CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHH
Confidence 3456789998875 34678999999999999999999999754 2468999999998874 489999999999
Q ss_pred cccc-cceeeeEEEcCCC-----CccEEEEEEEEE
Q 009664 493 RVIL-EGEYTDCFELDGT-----KSGKLKLHLKWM 521 (529)
Q Consensus 493 ~l~~-~~~~~~w~~L~~~-----~~G~i~l~~~~~ 521 (529)
++.. +....+||+|+.. .+|+|+|++.++
T Consensus 92 ~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 92 SFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred HcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9974 3446899999853 589999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-14 Score=123.97 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=75.2
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee---------------cCCCCEEEEEEEECCCCCC-
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE---------------DGLHDMLIAEVWDHDTFGK- 481 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~---------------~~~~~~L~i~V~D~~~~~~- 481 (529)
..+.++||++|++........++||+++++|.||+|||.|+|.+. +.....|.|.|||++..++
T Consensus 15 ~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~d 94 (148)
T cd04010 15 KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGD 94 (148)
T ss_pred CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCC
Confidence 356788999999766544446789999999999999999999995 2233579999999998755
Q ss_pred CeeEEEEEeccccccc-ceeeeEEEcCC
Q 009664 482 DYMGRCILTLTRVILE-GEYTDCFELDG 508 (529)
Q Consensus 482 d~lG~~~i~L~~l~~~-~~~~~w~~L~~ 508 (529)
++||++.|+|.++... .....||+|..
T Consensus 95 dfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 95 VFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred ceeEEEEEecccccccCCcCcceeecCC
Confidence 8999999999999876 56689999964
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=116.04 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=74.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..+.+++|+++++ +.+++||++++++.||+|||.|+|.+.++..+.|.|+|+|++. +++||++.++|.++...
T Consensus 17 ~~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~ 89 (105)
T cd04050 17 STKEPSPYVELTV-----GKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKE 89 (105)
T ss_pred cCCCCCcEEEEEE-----CCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhcc
Confidence 3467889998886 3478999999999999999999999998777899999999987 68999999999999876
Q ss_pred c--eeeeEEEcCCCC
Q 009664 498 G--EYTDCFELDGTK 510 (529)
Q Consensus 498 ~--~~~~w~~L~~~~ 510 (529)
. ..++||+|.+++
T Consensus 90 ~~~~~~~w~~L~~~g 104 (105)
T cd04050 90 PDLTLDQPFPLDNSG 104 (105)
T ss_pred ccceeeeeEecCCCC
Confidence 4 469999999753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=120.24 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=87.0
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--------CCCEEEEEEEECCCC-C-CCeeEEE
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--------LHDMLIAEVWDHDTF-G-KDYMGRC 487 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--------~~~~L~i~V~D~~~~-~-~d~lG~~ 487 (529)
.++..|+|+++++.....+.+++||+++++|+||+|||.|.|.+... ....|.++|||++.+ + +++||++
T Consensus 21 ~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~ 100 (155)
T cd08690 21 NPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTA 100 (155)
T ss_pred CCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEE
Confidence 45578899999875555677899999999999999999999999643 245799999999986 3 4899999
Q ss_pred EEecccccccceeeeEEEcC-CC--CccEEEEEEEEEe
Q 009664 488 ILTLTRVILEGEYTDCFELD-GT--KSGKLKLHLKWMP 522 (529)
Q Consensus 488 ~i~L~~l~~~~~~~~w~~L~-~~--~~G~i~l~~~~~~ 522 (529)
.++|+.+..+.....|++|. |. ..|++++++.-+.
T Consensus 101 ~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 101 QVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99999998777778899987 43 3689999888764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=121.59 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=83.1
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..+.++||+.+.+ .+.+..||++++++.||.|||.|+|.+.+. .+.|.|+|+|++..++++||++.++++++...
T Consensus 54 ~~g~sDPYv~V~l----~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 54 GKITSDPYATVDL----AGARVARTRVIENSENPVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG 128 (158)
T ss_pred CCCCcCeEEEEEE----CCeEeeEEEEeCCCCCCccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCC
Confidence 3456789999885 233457999999999999999999998754 46799999999988889999999999999877
Q ss_pred ceeeeEEEcCCC------CccEEEEEEEEE
Q 009664 498 GEYTDCFELDGT------KSGKLKLHLKWM 521 (529)
Q Consensus 498 ~~~~~w~~L~~~------~~G~i~l~~~~~ 521 (529)
...++||+|.+. ..|+|+++++|+
T Consensus 129 ~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 129 EPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 777999999642 358999999884
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-14 Score=120.17 Aligned_cols=123 Identities=21% Similarity=0.410 Sum_probs=92.4
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|++++.|.+. .+.+..+ +.+...+..+..++|+++.+........++||++++++.||.|||+
T Consensus 1 ~g~~~~~~~~~~~------------~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~ 68 (131)
T cd04026 1 RGRIYLKISVKDN------------KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNET 68 (131)
T ss_pred CcEEEEEEEECCC------------EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccce
Confidence 5888888888641 1122211 1222223345678999998754444456789999999999999999
Q ss_pred EEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 457 FDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 457 f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
|.|.+... ....|.|+|||++..++ ++||++.++|+++... ....||+|.+.+.|+.
T Consensus 69 f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 69 FTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred EEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99998754 45689999999998766 8999999999999754 5689999999888864
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=115.85 Aligned_cols=100 Identities=21% Similarity=0.384 Sum_probs=86.1
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
.+.++||+++++ +..++||++++++.||+|||.|.|.+.++ ....|.|+|||++..++ ++||++.++|+++.
T Consensus 12 ~g~~Dpyv~v~~-----~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~ 86 (127)
T cd08373 12 KGKGDRIAKVTF-----RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLV 86 (127)
T ss_pred CCCCCCEEEEEE-----CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcc
Confidence 456789999885 34568999999999999999999999754 56889999999998866 89999999999999
Q ss_pred ccceeeeEEEcCCC----CccEEEEEEEEEeC
Q 009664 496 LEGEYTDCFELDGT----KSGKLKLHLKWMPQ 523 (529)
Q Consensus 496 ~~~~~~~w~~L~~~----~~G~i~l~~~~~~~ 523 (529)
.+.....|++|.+. ..|+|++++.|.|.
T Consensus 87 ~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 87 SEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred cCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 88888999999632 35899999999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=108.77 Aligned_cols=85 Identities=35% Similarity=0.596 Sum_probs=76.5
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|+|+|++|++|...+..+.+|||+++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998544456999999999999999999999877777789999999999888999
Q ss_pred eEEEE
Q 009664 344 IGCAQ 348 (529)
Q Consensus 344 lG~~~ 348 (529)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99973
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=116.59 Aligned_cols=95 Identities=19% Similarity=0.388 Sum_probs=80.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc--
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL-- 496 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~-- 496 (529)
+..+||+++++ .+.+..||+++++|.||.|||+|+|.+. ....|.|.|||++..+. ++||++.++|+++..
T Consensus 33 g~~dpyv~v~~----~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 106 (132)
T cd04014 33 QLLDPYVSIDV----DDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRG 106 (132)
T ss_pred cCcCcEEEEEE----CCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC
Confidence 56789999886 2334579999999999999999999997 45789999999988765 899999999999987
Q ss_pred cceeeeEEEcCCCCccEEEEEEEEEe
Q 009664 497 EGEYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
....+.||+|+. .|+|+|++.|+.
T Consensus 107 ~~~~~~w~~L~~--~G~l~l~~~~~~ 130 (132)
T cd04014 107 SGSFDLWVDLEP--QGKLHVKIELKG 130 (132)
T ss_pred CCcccEEEEccC--CcEEEEEEEEec
Confidence 345699999985 699999999985
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=118.42 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=87.7
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|++++.|.+... .+.+..+ +.+...+..+..+||+++++... +..++||++++++.||.|||.
T Consensus 2 ~G~l~~~l~y~~~~~----------~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~~~kT~v~~~t~~P~Wne~ 69 (125)
T cd08386 2 LGRIQFSVSYDFQES----------TLTLKILKAVELPAKDFSGTSDPFVKIYLLPD--KKHKLETKVKRKNLNPHWNET 69 (125)
T ss_pred ccEEEEEEEECCCCC----------EEEEEEEEecCCCCccCCCCCCceEEEEECCC--CCcceeeeeecCCCCCcccee
Confidence 599999999975432 1222222 22222334567889999987432 345689999999999999999
Q ss_pred EEEEee---cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 457 FDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 457 f~f~v~---~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|.|.+. ......|.++|||++.+++ ++||++.++++++........|++|..
T Consensus 70 f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 70 FLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred EEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 999752 2345689999999998876 899999999999987777799999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=116.34 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=86.6
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCc-ccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEK-ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
++|+|.+++.|.+... .+.++.++ .+...+.. +.+++|+++++... ..+++||++++++.||+||
T Consensus 1 ~~G~l~~~l~y~~~~~----------~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~--~~~~~kT~v~~~t~nP~wn 68 (128)
T cd08388 1 KLGTLFFSLRYNSEKK----------ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE--KEHKVKTRVLRKTRNPVYD 68 (128)
T ss_pred CCeEEEEEEEEECCCC----------EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC--cCceeeccEEcCCCCCcee
Confidence 3699999999986432 22232222 22222333 67889999987543 3456799999999999999
Q ss_pred ceEEE-Eee--cCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc--ceeeeEEEcC
Q 009664 455 QTFDF-VVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE--GEYTDCFELD 507 (529)
Q Consensus 455 e~f~f-~v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~--~~~~~w~~L~ 507 (529)
|.|.| .++ +.....|.++|||++.+++ ++||++.++|+++... ++..-|.+|+
T Consensus 69 E~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 69 ETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999 443 2345679999999998876 8999999999998655 5578898876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=117.19 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=87.5
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
|+|.+++.|.+... .+.+..++ .+...+ ..+.+++|+++++.... ...+||++++++.||+|||.
T Consensus 1 G~l~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T~v~~~~~~P~wne~ 68 (123)
T cd08390 1 GRLWFSVQYDLEEE----------QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQSKVKRKTQNPNFDET 68 (123)
T ss_pred CEEEEEEEECCCCC----------EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEeeeEcCCCCCccceE
Confidence 78888888875432 12222221 121222 34567899999875432 34679999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|.|.++.. ....|.|+|||++..++ ++||++.++|+++........|++|+.
T Consensus 69 f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 69 FVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred EEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 99998643 34689999999998765 899999999999988888899999973
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-14 Score=122.10 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=87.5
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|++++.|.|... .+.+..++ .+...+ .+.+++|+++++........++||++++++.||+|||.
T Consensus 1 ~G~i~~sl~y~~~~~----------~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~ 69 (137)
T cd08409 1 LGDIQISLTYNPTLN----------RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNES 69 (137)
T ss_pred CcEEEEEEEECCCCC----------eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccce
Confidence 389999999987542 22332222 222223 55688999999876544445779999999999999999
Q ss_pred EEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 457 FDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 457 f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
|.|.++. .....|.|+|||++..++ ++||++.++..........++|+.+..++
T Consensus 70 F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p 126 (137)
T cd08409 70 FSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKP 126 (137)
T ss_pred EEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCC
Confidence 9999963 355789999999998766 89999999976554444456666665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=114.98 Aligned_cols=96 Identities=23% Similarity=0.433 Sum_probs=80.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++++ +..+++|++++++.||.|||.|.|.+.+.....|.|+|||++..++ ++||++.++|+++..
T Consensus 17 ~~~~~DPyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 17 RNGTSDPFVRVFY-----NGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CCCCcCceEEEEE-----CCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHccc
Confidence 3456789999885 4467899999999999999999999987667889999999998876 899999999999977
Q ss_pred cceeeeEEEcCC---------CCccEEEEEE
Q 009664 497 EGEYTDCFELDG---------TKSGKLKLHL 518 (529)
Q Consensus 497 ~~~~~~w~~L~~---------~~~G~i~l~~ 518 (529)
.+....||.|.. ...|.|++.+
T Consensus 92 ~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 92 AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 666789999975 2457777765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-14 Score=121.20 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=88.1
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|.++++|.+... .+.+..+ +++...+..+.++||+++++...+....++||++++++.||.|||+
T Consensus 1 ~G~l~~~l~y~~~~~----------~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~ 70 (136)
T cd08404 1 RGELLLSLCYQPTTN----------RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNES 70 (136)
T ss_pred CCeEEEEEEEeCCCC----------eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCce
Confidence 599999999975432 2222222 2222334456789999998755433345789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.++++. ......+|++|...
T Consensus 71 F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 71 FVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred EEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 99998642 45679999999999876 899999999998 34456889988654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=158.86 Aligned_cols=101 Identities=21% Similarity=0.480 Sum_probs=89.3
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
.+.+|||+.+++ +...++||++++++.||+|||.|+|.+.+| .++.|+|+|||++.++++.||.+.|+|.++..+
T Consensus 1996 ~~~sdPyv~l~~----g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~ 2071 (2102)
T PLN03200 1996 MGNTNAFCKLTL----GNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVME 2071 (2102)
T ss_pred cCCCCCeEEEEE----CCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcC
Confidence 467889998774 223367999999999999999999999887 457799999999999889999999999999999
Q ss_pred ceeeeEEEcCC--CCccE---EEEEEEEEeC
Q 009664 498 GEYTDCFELDG--TKSGK---LKLHLKWMPQ 523 (529)
Q Consensus 498 ~~~~~w~~L~~--~~~G~---i~l~~~~~~~ 523 (529)
+.++.||+|.+ ++.|+ |+++++|++.
T Consensus 2072 ~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2072 GTYSGEYSLNPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred ceeeeeeecCcccccCCCcceEEEEEEecCC
Confidence 99999999996 67899 9999999873
|
|
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-13 Score=113.36 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=79.3
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+.+.+ .+....||++++++.||.|||.|.|.+.+ ....|.|+|||++..+. ++||++.++++++.
T Consensus 16 d~~g~~DPYv~v~~----~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~ 90 (121)
T cd04054 16 DITGSSDPYCIVKV----DNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIGKVSLTREVIS 90 (121)
T ss_pred CCCCCCCceEEEEE----CCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEEEEEEcHHHhc
Confidence 34457789998875 23345799999999999999999999865 34689999999998876 89999999999887
Q ss_pred ccc-eeeeEEEcCCC-----CccEEEEEEE
Q 009664 496 LEG-EYTDCFELDGT-----KSGKLKLHLK 519 (529)
Q Consensus 496 ~~~-~~~~w~~L~~~-----~~G~i~l~~~ 519 (529)
..+ ..++|++|.+. ..|+|+|++.
T Consensus 91 ~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 91 AHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred cCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 543 36899999763 3799998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-13 Score=120.22 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=86.5
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|.++++|.+... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.
T Consensus 1 ~G~l~~sl~y~~~~~----------~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~ 70 (136)
T cd08405 1 RGELLLSLCYNPTAN----------RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNES 70 (136)
T ss_pred CcEEEEEEEEcCCCC----------eEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccce
Confidence 589999999986432 22222222 222234456788999999765444445789999999999999999
Q ss_pred EEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 457 FDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 457 f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.++. ..+..|.|+|||++.+++ ++||++.+++.+. ....++|+++...
T Consensus 71 F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 71 FIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred EEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 9999863 245689999999998876 8999999999885 2334667666544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-13 Score=110.55 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=71.3
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccccee
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEY 500 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~ 500 (529)
..+||+.+.+ +.++.+|+++++ .||.|||.|.|.+.+.. ..|.|+|||++..++|+||++.|+|+++..+...
T Consensus 19 ~~dPYV~Ik~-----g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~ 91 (127)
T cd08394 19 KFNTYVTLKV-----QNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEE 91 (127)
T ss_pred CCCCeEEEEE-----CCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCC
Confidence 3458887775 667889999987 59999999999998754 4499999999987779999999999999876543
Q ss_pred --eeEEEcCC---CCccEEE
Q 009664 501 --TDCFELDG---TKSGKLK 515 (529)
Q Consensus 501 --~~w~~L~~---~~~G~i~ 515 (529)
.+||+|+. ...|++.
T Consensus 92 ~~~~Wy~L~~~~~~~~~~~~ 111 (127)
T cd08394 92 GPGEWLTLDSEVNMKNGQIV 111 (127)
T ss_pred CCCccEecChHHhccCCeEe
Confidence 89999984 3456553
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-13 Score=115.22 Aligned_cols=102 Identities=20% Similarity=0.338 Sum_probs=81.9
Q ss_pred CcccCCCceEEEEEEEcc--CCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 418 EKALKSGANGTEAIELEK--DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
..+.++||+++++..... ...++||+++++|.||.|||.|.|.+.. ....|.++|||++..++ ++||++.++++++
T Consensus 17 ~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l 95 (133)
T cd04033 17 IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95 (133)
T ss_pred CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCCCCCCeeEEEEEEHHHC
Confidence 345678999998754311 1235799999999999999999999864 35689999999999876 8999999999998
Q ss_pred cccce------eeeEEEcCC-----CCccEEEEEEEE
Q 009664 495 ILEGE------YTDCFELDG-----TKSGKLKLHLKW 520 (529)
Q Consensus 495 ~~~~~------~~~w~~L~~-----~~~G~i~l~~~~ 520 (529)
..... ..+||+|.+ ...|+|++++.|
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 96 PTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 86532 369999984 247999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=118.96 Aligned_cols=124 Identities=22% Similarity=0.315 Sum_probs=89.5
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|.+++.|.|... .+.+..++ .+...+..+.++||+++++........++||++++++.||.|||.
T Consensus 1 ~G~l~~~l~y~~~~~----------~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 70 (136)
T cd08402 1 LGDICFSLRYVPTAG----------KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNES 70 (136)
T ss_pred CcEEEEEeEEcCCCC----------eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccce
Confidence 489999999987542 12222222 222234456789999999765444446789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.+++... .....+|+++...+...+
T Consensus 71 f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 71 FSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred EEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 99998643 34589999999999876 8999999999863 334577887766544443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=110.65 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=81.6
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
..+.++||+.+.+ +.+++||++++++.||+|||.|.|.+.+. ...|.|+|||++..++++||++.++++++.
T Consensus 20 ~~g~~dPyv~v~~-----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~-- 91 (126)
T cd04046 20 SGGGADPYVIIKC-----EGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFLGQATLSADPND-- 91 (126)
T ss_pred CCCCcCccEEEEE-----CCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCceEEEEEecccCC--
Confidence 4567889998874 45678999999999999999999988764 678999999999887799999999998753
Q ss_pred ceeeeEEEcC-------CCCccEEEEEEEEEeCC
Q 009664 498 GEYTDCFELD-------GTKSGKLKLHLKWMPQP 524 (529)
Q Consensus 498 ~~~~~w~~L~-------~~~~G~i~l~~~~~~~~ 524 (529)
....+||+|. +...|+|.+++...+.+
T Consensus 92 ~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 92 SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CcCceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 4446888993 34689999999877654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-13 Score=114.99 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=85.2
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcch--hhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMT--SLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|.++++|.|... .+.+. ..+++...+..+.++||+++++........++||+++++|.||+|||.|
T Consensus 1 G~i~~~l~y~~~~~----------~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F 70 (135)
T cd08410 1 GELLLSLNYLPSAG----------RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESF 70 (135)
T ss_pred CcEEEEEEECCCCC----------eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeE
Confidence 78999999986542 22222 2222333344567899999987544444467899999999999999999
Q ss_pred EEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 458 DFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 458 ~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
.|.+.. .....|.|+|||++..++ ++||++.|+...... ...++|+.|...
T Consensus 71 ~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 71 SFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred EEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 999953 244579999999998766 899999987654422 224778877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=111.10 Aligned_cols=99 Identities=25% Similarity=0.384 Sum_probs=80.2
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+..++|+++++ ...+...+||++++++.||.|||.|.|.+.......|.|+|||++..++ ++||++.++|+++...
T Consensus 19 ~~~~Dpyv~v~~--~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~ 96 (126)
T cd04043 19 NGLSDPYVTLVD--TNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFG 96 (126)
T ss_pred CCCCCceEEEEE--CCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcC
Confidence 456789998863 1222456899999999999999999999987666789999999998765 7999999999986543
Q ss_pred c---eeeeEEEcCCCCccEEEEEEEEE
Q 009664 498 G---EYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 498 ~---~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
. ....|++|.+ .|++++++.+.
T Consensus 97 ~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 97 DDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred CCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 2 3478999986 69999988775
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=110.88 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=81.1
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+..++|+.+.+... ...+||++++++.||.|||.|.|.+. ...+.|.|+|||++..++ ++||++.++|.++....
T Consensus 22 ~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~ 97 (124)
T cd04044 22 GTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNP 97 (124)
T ss_pred CCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCc
Confidence 45679998886211 46789999999999999999999998 457799999999998765 89999999999998876
Q ss_pred eee-eEEEcC--CCCccEEEEEEEEEe
Q 009664 499 EYT-DCFELD--GTKSGKLKLHLKWMP 522 (529)
Q Consensus 499 ~~~-~w~~L~--~~~~G~i~l~~~~~~ 522 (529)
... .|+.+. +...|+|+++++|.|
T Consensus 98 ~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 98 EQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred cccCcchhhhcCCccceEEEEEEEeCC
Confidence 654 344443 556899999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=112.22 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=86.2
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccC-CeeEeeecccCCCCCccCce
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKD-ASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~kT~v~~~t~nP~wne~ 456 (529)
|+|.+++.|.+... .+.++.++ .+...+..+.+++|++++++..... ..++||++++++.||+|||+
T Consensus 2 ~ei~~sL~Y~~~~~----------~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEt 71 (138)
T cd08408 2 PELLLGLEYNALTG----------RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKET 71 (138)
T ss_pred CeEEEEeEEcCCCC----------eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeee
Confidence 68889999976542 23332222 2223345567899999998765432 35689999999999999999
Q ss_pred EEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 457 FDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 457 f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|.|.++. ..+..|.|+|||.+.+++ ++||++.+++..... .+.++|+.+..+
T Consensus 72 F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~ 126 (138)
T cd08408 72 FVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKES 126 (138)
T ss_pred EEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhC
Confidence 9999973 466799999999998766 899999999986432 223577777543
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-13 Score=117.28 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=90.2
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|++.++|.+... .+.+...+ .+...+..+..++|+++++........+++|++++++.||.|||.|
T Consensus 1 G~i~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f 70 (134)
T cd00276 1 GELLLSLSYLPTAE----------RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAF 70 (134)
T ss_pred CeEEEEEEeeCCCC----------EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeE
Confidence 78888888875431 22222222 2222234557789999997655433457899999999999999999
Q ss_pred EEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 458 DFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 458 ~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
.|.+... ....|.|+|||++..++ ++||++.+++++ .....++|++|.......+
T Consensus 71 ~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 71 SFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred EEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 9999754 36789999999998655 899999999999 4455689999987654433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=136.10 Aligned_cols=101 Identities=17% Similarity=0.337 Sum_probs=87.7
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||++|.+ .+.++.||++++++.||+|||.|.|.|.++ ...|.|+|+|++.++++.||++.|+|.++....
T Consensus 74 ~~tSDPYV~I~L----g~~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 74 VITSDPYVTVVV----PQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE 148 (868)
T ss_pred cCCCCceEEEEE----CCcceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC
Confidence 356789999986 234467999999999999999999999885 458999999999998899999999999998888
Q ss_pred eeeeEEEcCCC------CccEEEEEEEEEeCC
Q 009664 499 EYTDCFELDGT------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 499 ~~~~w~~L~~~------~~G~i~l~~~~~~~~ 524 (529)
..+.|++|.+. +.|+|+++++|+|..
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 88999999752 357999999999963
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=108.21 Aligned_cols=95 Identities=20% Similarity=0.357 Sum_probs=80.1
Q ss_pred EEEEEEEecCCCcc--CCCCC--CCcEEEEEEecCCCCeEeccccCCCCC--CeeccEEEEEEecC--------------
Q 009664 264 LEVKLVQAKGLTNK--DLIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE-------------- 323 (529)
Q Consensus 264 L~V~v~~a~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~kT~~~~~t~n--P~Wne~f~~~v~~~-------------- 323 (529)
|+|.|.+|++++.. +..|. +||||+..+.+....+++|.+.++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 79999999996543 34564 999999999866567899999999999 99999999887551
Q ss_pred ---------CCCEEEEEEEECCCCCCCceeEEEEEECcccCCCc
Q 009664 324 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 358 (529)
Q Consensus 324 ---------~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 358 (529)
....|.++|||.|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24579999999999999999999999999876544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=111.97 Aligned_cols=74 Identities=28% Similarity=0.436 Sum_probs=64.9
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.+|||+-++ .+.++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++. |+||.++|+|..+.
T Consensus 22 D~~~sSDPyVVl~-----lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 22 DFLGSSDPYVVLE-----LGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDDFMGEATIPLKPLL 95 (168)
T ss_pred ccccCCCCeEEEE-----ECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcccccceeeeccHHHH
Confidence 3346788998776 488899999999999999999999999985 5679999999999987 89999999998775
Q ss_pred c
Q 009664 496 L 496 (529)
Q Consensus 496 ~ 496 (529)
.
T Consensus 96 ~ 96 (168)
T KOG1030|consen 96 E 96 (168)
T ss_pred H
Confidence 4
|
|
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=110.24 Aligned_cols=102 Identities=23% Similarity=0.426 Sum_probs=79.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---------CCCEEEEEEEECCCCCC-CeeEE
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWDHDTFGK-DYMGR 486 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~D~~~~~~-d~lG~ 486 (529)
+..+.++||+++++ +..++||+++++|.||.|||.|.|.+... ....|.|+|||++..++ ++||+
T Consensus 17 d~~g~~dpyv~v~~-----~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~ 91 (135)
T cd04017 17 DKSGLSDPFARVSF-----LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGR 91 (135)
T ss_pred CCCCCCCCEEEEEE-----CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceE
Confidence 44567889999885 34578999999999999999999975321 12579999999998876 89999
Q ss_pred EEE-eccccccc---ceeeeEEEcC--CCCccEEEEEEEEEeC
Q 009664 487 CIL-TLTRVILE---GEYTDCFELD--GTKSGKLKLHLKWMPQ 523 (529)
Q Consensus 487 ~~i-~L~~l~~~---~~~~~w~~L~--~~~~G~i~l~~~~~~~ 523 (529)
+.+ ++..+... ....+||+|. +...|+|.|+++..++
T Consensus 92 ~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 92 SVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred EEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 997 44444321 3358999997 3467999999998875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-13 Score=114.55 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=84.3
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|.+++.|.+... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.|
T Consensus 1 g~l~~~~~y~~~~~----------~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f 70 (134)
T cd08403 1 GELMFSLCYLPTAG----------RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEAL 70 (134)
T ss_pred CeEEEEEEEcCCCC----------EEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceE
Confidence 78889999986542 22222222 2222344567889999997654444467899999999999999999
Q ss_pred EEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 458 DFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 458 ~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
.|.++.. ....|.|+|||++..++ ++||++.+++... ....+.|+++...
T Consensus 71 ~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~ 123 (134)
T cd08403 71 VFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEMLAN 123 (134)
T ss_pred EEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHHHHC
Confidence 9998632 44579999999999876 8999999998732 2334677777543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=111.17 Aligned_cols=110 Identities=19% Similarity=0.283 Sum_probs=81.1
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEcc--CCeeEeeecccCCCCCcc
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEK--DASQKRREVVNDCLNPIW 453 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~kT~v~~~t~nP~w 453 (529)
++|+|.+++.|.+... .+.+..++ .+...+..+.+++|+++++..... ...++||+++++|.||+|
T Consensus 1 ~~G~l~~~l~y~~~~~----------~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~w 70 (133)
T cd04009 1 PYGVLTVKAYYRASEQ----------SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF 70 (133)
T ss_pred CceEEEEEEEEcCCCC----------EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCcc
Confidence 3699999999975321 12222222 222233456788999998754332 346789999999999999
Q ss_pred CceEEEEeecC----CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 454 NQTFDFVVEDG----LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 454 ne~f~f~v~~~----~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
||.|.|.+... ....|.|+|||++..++ ++||++.++|+++..-
T Consensus 71 nE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 71 DESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999998642 35689999999998875 8999999999998643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=107.11 Aligned_cols=85 Identities=26% Similarity=0.513 Sum_probs=72.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCcc-CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
.+.+++|+++++ +..++||++++++.||.| ||.|+|.+... .+..|.|+|||++..++ ++||++.++++++
T Consensus 18 ~~~~Dpyv~v~~-----~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 18 SDLTDAFVEVKF-----GSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92 (110)
T ss_pred CCCCCceEEEEE-----CCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHh
Confidence 356789999886 337899999999999999 99999999754 35789999999999876 8999999999999
Q ss_pred ccc---ceeeeEEEcCC
Q 009664 495 ILE---GEYTDCFELDG 508 (529)
Q Consensus 495 ~~~---~~~~~w~~L~~ 508 (529)
... ...+.||+|.+
T Consensus 93 ~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 93 LLKDSVSQISGWFPIYD 109 (110)
T ss_pred cccCCccccCCeEEccc
Confidence 873 34689999975
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-13 Score=114.94 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
+..+.+++|+++++........++||++++++.||.|||.|.|.+... ....|.|+|||++..++ ++||++.++++.
T Consensus 29 d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 29 DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 445678899999987654445678999999999999999999998643 45689999999998765 899999999986
Q ss_pred ccccceeeeEEEcCCC
Q 009664 494 VILEGEYTDCFELDGT 509 (529)
Q Consensus 494 l~~~~~~~~w~~L~~~ 509 (529)
......+||++...
T Consensus 109 --~~~~~~~W~~~l~~ 122 (133)
T cd08384 109 --KGERLRHWLDCLKN 122 (133)
T ss_pred --CCchHHHHHHHHhC
Confidence 23345788888654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=109.04 Aligned_cols=95 Identities=20% Similarity=0.353 Sum_probs=76.6
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC---CeeEEEEEecccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---DYMGRCILTLTRV 494 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~---d~lG~~~i~L~~l 494 (529)
..+.++||+.+++ .+.+++||++++++.||.|||.|+|.+.. ...|.|+|||++.+++ ++||++.++++++
T Consensus 17 ~~~~~dpyv~v~~----~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l 90 (123)
T cd08382 17 LFRLPDPFAVITV----DGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGFLGCVRIRANAV 90 (123)
T ss_pred CCCCCCcEEEEEE----CCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCceEeEEEEEHHHc
Confidence 3457889998885 23667899999999999999999999975 6799999999998753 5999999999999
Q ss_pred cccce-eeeEEEcCCC-------CccEEEEEE
Q 009664 495 ILEGE-YTDCFELDGT-------KSGKLKLHL 518 (529)
Q Consensus 495 ~~~~~-~~~w~~L~~~-------~~G~i~l~~ 518 (529)
..... ...||+|... ..|+|.+++
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 91 LPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred cccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 76554 3789999532 257776654
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-12 Score=111.11 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=76.3
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.++||++|.+ +.++.||++++++.||+|||.|.|.+..+ ..+.|.|+|||++..++ ++||++.++|+++..
T Consensus 32 ~~~~DPYV~V~~-----~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 32 KELVDPYVEVSF-----AGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CCCcCcEEEEEE-----CCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 356789999885 34567999999999999999999998644 45689999999998865 899999999999877
Q ss_pred cce-------eeeEEEcCCCCccEEEE
Q 009664 497 EGE-------YTDCFELDGTKSGKLKL 516 (529)
Q Consensus 497 ~~~-------~~~w~~L~~~~~G~i~l 516 (529)
.+. ...|++|.++..+..++
T Consensus 107 ~~~~~~lp~~~p~W~~lyg~~~~~~~~ 133 (151)
T cd04018 107 SGDEGFLPTFGPSFVNLYGSPREYSLL 133 (151)
T ss_pred CCccccCCccCceEEEeecCccccccc
Confidence 653 26999999887665544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-12 Score=109.04 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=75.5
Q ss_pred CcccCCCceEEEEEEEc--cCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCC----CCC-CeeEEEEEe
Q 009664 418 EKALKSGANGTEAIELE--KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----FGK-DYMGRCILT 490 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~----~~~-d~lG~~~i~ 490 (529)
..+.++||+++++.... .....+||++++++.||+|||.|.|.+.....+.|.|+|||++. .++ ++||++.++
T Consensus 17 ~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 17 VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 34577899999976543 23356899999999999999999998765556789999999996 555 899999999
Q ss_pred cccccccceeeeEEEcCC
Q 009664 491 LTRVILEGEYTDCFELDG 508 (529)
Q Consensus 491 L~~l~~~~~~~~w~~L~~ 508 (529)
++++........|++|.+
T Consensus 97 l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 97 LGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred HHHHhcCCCcEEEEEccC
Confidence 999998777788999954
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-12 Score=105.89 Aligned_cols=94 Identities=22% Similarity=0.384 Sum_probs=77.4
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+.+++ ...+++|++++++.||.|||+|.|.+.+. ...|.|+|||++..++ ++||++.+++.++...
T Consensus 19 ~~~~dPyv~v~~-----~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~ 92 (119)
T cd08377 19 GGKSDPFCVLEL-----VNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG 92 (119)
T ss_pred CCCCCcEEEEEE-----CCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC
Confidence 346789998875 34467999999999999999999998753 5789999999998765 8999999999998643
Q ss_pred ceeeeEEEcCCC-----CccEEEEEEEE
Q 009664 498 GEYTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 498 ~~~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
..+||+|.+. ..|+|.+++++
T Consensus 93 --~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 93 --ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred --CceEEECcccCCCCceeeEEEEEEEe
Confidence 3689999642 48999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=108.23 Aligned_cols=116 Identities=21% Similarity=0.300 Sum_probs=83.8
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
.|+|++++.|.+... .+.+..+ +.+...+..+.+++|+++++........++||++++++.||.|||.
T Consensus 1 ~G~~~~~l~y~~~~~----------~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~ 70 (123)
T cd04035 1 LGTLEFTLLYDPANS----------ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNET 70 (123)
T ss_pred CcEEEEEEEEeCCCC----------EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccce
Confidence 388999999976531 1222222 1222233456788999999865554556889999999999999999
Q ss_pred EEEE-ee--cCCCCEEEEEEEECCCCCCCeeEEEEEecccccccceeeeEE
Q 009664 457 FDFV-VE--DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF 504 (529)
Q Consensus 457 f~f~-v~--~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~ 504 (529)
|.|. +. +..+..|.|+|||++..++++||++.++|+++..++...-|+
T Consensus 71 f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 71 LTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 9996 32 224578999999998875589999999999998766544444
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-12 Score=128.25 Aligned_cols=120 Identities=31% Similarity=0.606 Sum_probs=100.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC-
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI- 338 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~- 338 (529)
=...++++|+.|.+|..+|..|++|||+...++ ..+.+|++|...+||+|||.|.|..++. +..+.++|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dl 368 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDL 368 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccH
Confidence 347899999999999999999999999999997 6778999999999999999999999876 45899999998752
Q ss_pred ----------CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 339 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 339 ----------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
..|||+|+..+.+..|.. ..+.||.|.++.+ +...+|.|++.+..
T Consensus 369 ksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisv 423 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEE
Confidence 358999999999887653 3578999987642 45667877665544
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=100.26 Aligned_cols=97 Identities=38% Similarity=0.657 Sum_probs=82.5
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCc
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 342 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~ 342 (529)
.|.|+|++|++|......+..+||+++++.+.+...++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998776568899999999833225789999999999999999999998765679999999998877789
Q ss_pred eeEEEEEECcccCCCce
Q 009664 343 LIGCAQVRLCELEPGKV 359 (529)
Q Consensus 343 ~lG~~~i~l~~l~~~~~ 359 (529)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999998866543
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=99.88 Aligned_cols=101 Identities=39% Similarity=0.725 Sum_probs=86.5
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCce
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 343 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~ 343 (529)
|.|+|++|++|......+..+|||.+.+.. ...++|+++.++.||.||+.|.|.+.......+.++|||.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 478999999998866677899999999972 367899999999999999999999977445689999999998877899
Q ss_pred eEEEEEECcccC-CCceeeEEEEc
Q 009664 344 IGCAQVRLCELE-PGKVKDVWLKL 366 (529)
Q Consensus 344 lG~~~i~l~~l~-~~~~~~~~~~L 366 (529)
+|.+.+++.++. .......|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 66666777754
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.7e-12 Score=104.05 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=70.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC----CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
.+..+||+++++ +.+++||++++++.||.|||.|.|.+..+ .+..|.|+|||++.+++ ++||++.++|++
T Consensus 18 ~~~~dpyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 18 GGNIDPVVKVEV-----GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCCCEEEEEE-----CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 356789999886 34578999999999999999999998543 35689999999998875 899999999999
Q ss_pred ccccce---eeeEEEcCC
Q 009664 494 VILEGE---YTDCFELDG 508 (529)
Q Consensus 494 l~~~~~---~~~w~~L~~ 508 (529)
+..... +.+||+|.+
T Consensus 93 v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 93 VYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCCCCcceEEEEEeeC
Confidence 976533 589999975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-12 Score=106.31 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=69.5
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+.++||+++++... +...+||++++++.||+|||.|.|.+... ....|.++|||++..++ ++||++.++++++.
T Consensus 21 ~~~Dpyv~v~~~~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 21 GSSDPYVTASFAKF--GKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCccEEEEEccC--CCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh
Confidence 57789999986432 34568999999999999999999988643 45689999999999876 89999999999997
Q ss_pred ccceeeeEEEcCC
Q 009664 496 LEGEYTDCFELDG 508 (529)
Q Consensus 496 ~~~~~~~w~~L~~ 508 (529)
.+ ..|+++..
T Consensus 99 ~~---~~~~~~~~ 108 (111)
T cd04041 99 ED---RNWMGRRE 108 (111)
T ss_pred cC---CCCCcccc
Confidence 43 57887764
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=105.85 Aligned_cols=93 Identities=26% Similarity=0.578 Sum_probs=74.2
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC------------CCCeeE
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF------------GKDYMG 485 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~------------~~d~lG 485 (529)
..+.++||+.+++ +..+++|++++++.||.|||.|.|.+.++ ...|.|+|||++.. .+++||
T Consensus 18 ~~g~~DPyv~v~~-----~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 18 KTGTSDPYVTVQV-----GKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred CCCCcCcEEEEEE-----CCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 3456789998885 34578999999999999999999998654 56899999999852 248999
Q ss_pred EEEEecccccccceeeeEEEcCCC-----CccEEEEEE
Q 009664 486 RCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL 518 (529)
Q Consensus 486 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 518 (529)
++.+++.++. +...+||+|... ..|+|.+++
T Consensus 92 ~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 92 QTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 9999999874 345799999852 468888764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=105.39 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=77.6
Q ss_pred cccCCCceEEEEEEEccC--------CeeEeeecccCCCCCcc-CceEEEEeecCCCCEEEEEEEECCCCC----CCeeE
Q 009664 419 KALKSGANGTEAIELEKD--------ASQKRREVVNDCLNPIW-NQTFDFVVEDGLHDMLIAEVWDHDTFG----KDYMG 485 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~--------~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~i~V~D~~~~~----~d~lG 485 (529)
.+.++||+++.+...+.. .+++||++++++.||+| ||.|.|.+. .++.|.++|||++..+ +++||
T Consensus 18 fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~D~~~~~~~~~~d~lG 95 (137)
T cd08691 18 FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVKDKFAKSRPIIRRFLG 95 (137)
T ss_pred CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEEecCCCCCccCCceEE
Confidence 357889999997543322 45799999999999999 999999985 4568999999986532 48999
Q ss_pred EEEEecccccccc---eeeeEEEcCC-----CCccEEEEEE
Q 009664 486 RCILTLTRVILEG---EYTDCFELDG-----TKSGKLKLHL 518 (529)
Q Consensus 486 ~~~i~L~~l~~~~---~~~~w~~L~~-----~~~G~i~l~~ 518 (529)
++.++++++.... ....||+|.- ..+|+|.+++
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 96 KLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999999998653 3578999973 3468877765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=107.81 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=75.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---------------CCCEEEEEEEECCCCCC-C
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---------------LHDMLIAEVWDHDTFGK-D 482 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~L~i~V~D~~~~~~-d 482 (529)
.+..+||+++++... ....++||++++++.||.|||.|.|.+... ....|.|+|||++..++ +
T Consensus 16 ~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 16 NGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred CCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 456789999987532 235678999999999999999999998764 45689999999998755 8
Q ss_pred eeEEEEEecccccccceeeeEEEcCCC
Q 009664 483 YMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 483 ~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
+||++.++|+++...+....||+|+..
T Consensus 95 ~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 95 FLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999999877777999999864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=101.67 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=62.7
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
..+||+.+++ +.+++||++++++.||+|||.|.|.+.+. .+..|.|+|||++..++ ++||++.++|+++....
T Consensus 25 ~~DPYv~v~~-----~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 25 DMDPFVIISF-----GRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ccCceEEEEE-----CCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 4689998885 45678999999999999999999998654 44589999999998876 89999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=108.70 Aligned_cols=86 Identities=30% Similarity=0.493 Sum_probs=70.5
Q ss_pred CCcccCCCceEEEEEEEcc------------------------CCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEE
Q 009664 417 GEKALKSGANGTEAIELEK------------------------DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAE 472 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~------------------------~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~ 472 (529)
+..+.++||+++++..... ....++|++++++.||.|||.|.|.+.+.....|.|+
T Consensus 44 d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~ 123 (153)
T cd08676 44 DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLD 123 (153)
T ss_pred CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEE
Confidence 3456788999998743211 1235799999999999999999999987667899999
Q ss_pred EEECCCCCCCeeEEEEEecccccccceeeeEEEc
Q 009664 473 VWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL 506 (529)
Q Consensus 473 V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~~L 506 (529)
|||++ +++||++.++++++.. ...++||+|
T Consensus 124 V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 124 IWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred EEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99998 6899999999999984 446999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=102.73 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=74.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+..++|+++.+ .+...++|+++.++.||.|||.|.|.+.+.....+.|+|||++..++ ++||++.+++.++..+
T Consensus 17 ~~~~dpyv~v~~----~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~ 92 (115)
T cd04040 17 NGKSDPFVKFYL----NGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPE 92 (115)
T ss_pred CCCCCCeEEEEE----CCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCC
Confidence 456789998875 23456899999999999999999999987667899999999998765 7999999999999887
Q ss_pred ceeeeEEEcCCC
Q 009664 498 GEYTDCFELDGT 509 (529)
Q Consensus 498 ~~~~~w~~L~~~ 509 (529)
.....|++|.+.
T Consensus 93 ~~~~~~~~L~~~ 104 (115)
T cd04040 93 ETTELTLPLDGQ 104 (115)
T ss_pred CcEEEEEECcCC
Confidence 778999999863
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=124.64 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=106.6
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhh--hhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV--LTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++++.|..... .+.++.+.+. ...+..+.+++|++++++..+ ..+.+|++.++|+||.|
T Consensus 150 ~~~~G~l~fsl~Yd~~~~----------~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~f 217 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELN----------LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVF 217 (421)
T ss_pred ceeeeeEEEEEEecccCC----------EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC--CCcceeeeeecCcCCcc
Confidence 466799999999974331 2222222222 122334578999999998876 55789999999999999
Q ss_pred CceEEEEee--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC------CccEEEEEEEEEeCC
Q 009664 454 NQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 454 ne~f~f~v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~~~~ 524 (529)
||+|.|.|. +.....|+++|||.++++. ++||++.++|..+........|.+|... ..|+|.+.++|.|..
T Consensus 218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence 999999975 3467899999999999987 8999999999998777667889999742 237999999999863
|
|
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=104.05 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=74.9
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCC----CCEEEEEEEECCCCCC-CeeEEEEEecc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTFGK-DYMGRCILTLT 492 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~L~i~V~D~~~~~~-d~lG~~~i~L~ 492 (529)
.+..+||+.+++. +..+++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++.+++ ++||++.++|.
T Consensus 18 ~~~~dpYv~v~~~----~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~ 93 (125)
T cd04051 18 FGKMKVYAVVWID----PSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLK 93 (125)
T ss_pred ccCCceEEEEEEC----CCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHH
Confidence 4567799988752 23578999875 5899999999999997653 6889999999998665 89999999999
Q ss_pred cccccce-----eeeEEEcCC---CCccEEEE
Q 009664 493 RVILEGE-----YTDCFELDG---TKSGKLKL 516 (529)
Q Consensus 493 ~l~~~~~-----~~~w~~L~~---~~~G~i~l 516 (529)
++..... ...||+|.+ ...|.|++
T Consensus 94 ~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 94 DLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred HhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9987654 368999974 45677753
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-11 Score=101.40 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=75.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+++.+ .+..+++|++++++.||.|||.|.|.+.+. .+.|.|+|||++..++ ++||++.+++.++...
T Consensus 19 ~g~~DPYv~v~~----~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 19 VGKIDPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCCcCCEEEEEE----CCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence 457789999885 233578999999999999999999998764 4689999999998876 7999999999999876
Q ss_pred ceeeeEEEcCCCCccEEE
Q 009664 498 GEYTDCFELDGTKSGKLK 515 (529)
Q Consensus 498 ~~~~~w~~L~~~~~G~i~ 515 (529)
..+.||.|.++.+++..
T Consensus 94 -~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 94 -NEDGKYVEYDDEEERLK 110 (120)
T ss_pred -CCCceEEecCCCcceee
Confidence 55889999877666554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-11 Score=100.70 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=72.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccC-CCCCccCceEEEEeecC---CCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
+..+||+.+.+ +.+.++|+++++ +.||.|||.|.|.+.++ ....|.|+|||++.++. ++||++.++|+++
T Consensus 20 ~~~dpyv~v~~-----~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l 94 (124)
T cd04049 20 GKIDPYVIIQC-----RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94 (124)
T ss_pred CCcCceEEEEE-----CCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHh
Confidence 46779998875 345678888875 89999999999999876 35789999999998865 8999999999999
Q ss_pred cccceeeeEEEcCCC
Q 009664 495 ILEGEYTDCFELDGT 509 (529)
Q Consensus 495 ~~~~~~~~w~~L~~~ 509 (529)
...+..+.|++|...
T Consensus 95 ~~~~~~~~~~~l~p~ 109 (124)
T cd04049 95 FEEGVEPGTAELVPA 109 (124)
T ss_pred hhCCCCcCceEeecc
Confidence 988888999999875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=96.40 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=68.5
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECC-------CCCC-CeeEEEEEec
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-------TFGK-DYMGRCILTL 491 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~-------~~~~-d~lG~~~i~L 491 (529)
+.++||+++++...+....+.||+++++|.||+|||.|+|.+.+ ...|.+.|||++ ..++ +.+|...+.|
T Consensus 13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 45789999875443333467999999999999999999999973 669999999983 4444 7896666555
Q ss_pred --ccccccceeeeEEEcCCCCccEEEEEEEE
Q 009664 492 --TRVILEGEYTDCFELDGTKSGKLKLHLKW 520 (529)
Q Consensus 492 --~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 520 (529)
+.+..++....-+.|.+ =+|.++++|
T Consensus 91 d~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 91 DPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred CHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 45544555566677765 255555543
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-11 Score=102.31 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=64.0
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+.+++ +.+++||++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ ++||++.+++.++....
T Consensus 20 ~~sDPYV~v~~-----g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 20 TSSDPYVVLTL-----GNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCcCcEEEEEE-----CCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 46789998875 56789999999999999999999999876 7789999999999876 89999999999986543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=99.81 Aligned_cols=94 Identities=23% Similarity=0.384 Sum_probs=75.0
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+..+||+.+++ .+..++||++++++.||.|||.|.|.+.+ .+.|.|+|||++..+. ++||++.++|+++...
T Consensus 19 ~~~~dPyv~v~~----~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 19 SFKPDPYVEVTV----DGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCCCeEEEEEE----CCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhh
Confidence 345779998875 22347899999999999999999999863 5789999999998865 8999999999999865
Q ss_pred ce-----eeeEEEcCC------CCccEEEEEE
Q 009664 498 GE-----YTDCFELDG------TKSGKLKLHL 518 (529)
Q Consensus 498 ~~-----~~~w~~L~~------~~~G~i~l~~ 518 (529)
.. ...|++|.. ...|++.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 93 HNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred cCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 33 346999952 3368888765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-11 Score=99.06 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=70.6
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCC--CCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
+.++||+.+++ .+.+.+||+++++ .||.|||+|.|.+.+.. ...|.+.+||++..++ ..+|.+.+.. +..
T Consensus 16 ~~~dpyv~v~~----~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~--~~~ 88 (117)
T cd08383 16 GTRDPYCTVSL----DQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSK--LDL 88 (117)
T ss_pred CCCCceEEEEE----CCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecC--cCC
Confidence 56789998886 2334579999988 99999999999997542 3468888899876544 5677665544 444
Q ss_pred cceeeeEEEcCCC-----CccEEEEEEEE
Q 009664 497 EGEYTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 497 ~~~~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
.+..++||+|.+. ..|+|++++.|
T Consensus 89 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 89 GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 5667899999863 37999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=122.81 Aligned_cols=129 Identities=22% Similarity=0.420 Sum_probs=104.8
Q ss_pred cceEEEEEEEEecCCCccC------------------CCCCCCcEEEEEEecCCCCeEeccccCCC-CCCeeccEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIV 320 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v 320 (529)
-.|.|.|+|.+|++|++.+ ..+.+|||+.+.+. +.+..||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEee
Confidence 3699999999999998631 12467999999997 4567899999885 6999999999998
Q ss_pred ecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccC
Q 009664 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 394 (529)
Q Consensus 321 ~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 394 (529)
.... ..+.|.|.|.|.++. .+||.+.+|..++..+...+.|+++..... +..+...+|+++++|.|....
T Consensus 84 ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~--~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDK--NPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCC--CcCCCCCEEEEEEEEEEcccC
Confidence 7765 589999999998864 699999999999999999999999975431 112233589999999997653
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=100.50 Aligned_cols=96 Identities=8% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECC-CC----CCCeeEEEEEeccccccc
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-TF----GKDYMGRCILTLTRVILE 497 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~-~~----~~d~lG~~~i~L~~l~~~ 497 (529)
++|+.+.+ .+....||+++.++.||.|||.|.|.+..+ -..+.|.|++.+ .. ++++||.+.|+++++...
T Consensus 28 ~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~ 102 (146)
T cd04013 28 RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSR 102 (146)
T ss_pred CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCC
Confidence 47777664 233446999999999999999999976433 357999997543 22 237999999999999987
Q ss_pred ceeeeEEEcCCC-------------CccEEEEEEEEEeC
Q 009664 498 GEYTDCFELDGT-------------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 ~~~~~w~~L~~~-------------~~G~i~l~~~~~~~ 523 (529)
...++||+|.+. ..++||++++|++.
T Consensus 103 ~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 103 QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 778999999742 12699999999985
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-10 Score=115.40 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=85.2
Q ss_pred ceEEEEEEEEecCCCc-----cCCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~ 333 (529)
...|.|+|+.|.+++. .+.....||||++.+.. .+...++|++..|+.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3679999999998751 12234679999999963 2334577888899999999999999998887778999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|+|..+.|+++|++.+|+..|..|- .+++|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence 9998888999999999999999876 345664
|
|
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=97.16 Aligned_cols=72 Identities=31% Similarity=0.421 Sum_probs=60.7
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeec-CCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
+.+++|+++++ +.+++||++++++.||+|||.|.|.... .....|.|+|||++..++ ++||++.++|.....
T Consensus 46 g~~DPYVkV~~-----~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 46 TSTDGYVKVFF-----GGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeEEEEEE-----CCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 46689999885 3348899999999999999999997533 357799999999999866 899999999997653
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=90.47 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=72.9
Q ss_pred HHHHHHHch-hh-HHHHHHHHHHhHHHHHhh-cCCCccceEEEEEEecCCCCCeEeeEEEEec-CCCeEEEEEEEEEecC
Q 009664 75 NHHLEKLWP-YV-NEAASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN 150 (529)
Q Consensus 75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~-~~p~~i~~~~~~~~~lG~~~P~i~~i~~~~~-~~~~~~ld~~~~~~~~ 150 (529)
|.++.+++- +. .+++.+.+++.++..|++ .+|++++++++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 677888765 33 357899999999999998 4699999999999999999999999999865 4456999999999999
Q ss_pred ceEEEEEEe
Q 009664 151 SSIILAIKT 159 (529)
Q Consensus 151 ~~i~l~~~~ 159 (529)
..+.++.+.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 988887763
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-10 Score=115.69 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=85.8
Q ss_pred ceEEEEEEEEecCCCcc------CCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v 332 (529)
...|.|+|+.|.+++.. +.....||||++.+-. .+..+.+|+++.++.||.|||+|.|.+..+.-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 1123459999999863 334567899999999999999999999887766899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||+|..+.++++|++.+|+..|..|. .|++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCc
Confidence 99998888999999999999999876 478885
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-11 Score=125.41 Aligned_cols=131 Identities=34% Similarity=0.586 Sum_probs=106.4
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC----------------------------eEeccccCCCCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK----------------------------TKKSKTINNDLNP 310 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~----------------------------~~kT~~~~~t~nP 310 (529)
.|.-.+.|.+.+|++|.++|.+|.+|||+...+.+...+ .+-|++++.|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 345566788899999999999999999999987542110 2448888999999
Q ss_pred eeccEEEEEEecCCCCEEEEEEEECCCC---------------------------------CC---CceeEEEEEECccc
Q 009664 311 IWNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCEL 354 (529)
Q Consensus 311 ~Wne~f~~~v~~~~~~~l~i~v~d~~~~---------------------------------~~---d~~lG~~~i~l~~l 354 (529)
.|+|.|.|.+.+..+..+.+.+||+|.- +. |||+|+..+|+.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999999999999889999999998741 22 89999999999998
Q ss_pred CCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 355 EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 355 ~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
... +.+.||.|+++. ..++.+|++++.+......+
T Consensus 271 P~~-Gld~WFkLepRS---~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 271 PPD-GLDQWFKLEPRS---DKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred Ccc-hHHHHhccCccc---ccccccceEEEEEEEeeecc
Confidence 653 468999998764 25678899999998875543
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-10 Score=94.47 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=78.7
Q ss_pred cccCCCceEEEEEEEcc-CCeeEeeecccCCC-CCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEK-DASQKRREVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~-~~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~ 496 (529)
.+..++|+++++..... ...++||++++++. ||.|||.|.|.+..+....|.++|||++..++++||++.++++++..
T Consensus 22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQ 101 (128)
T ss_pred CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcC
Confidence 34667999999766554 56789999988776 99999999999987666789999999998755899999999999843
Q ss_pred cceeeeEEEcCC-----CCccEEEEEEEE
Q 009664 497 EGEYTDCFELDG-----TKSGKLKLHLKW 520 (529)
Q Consensus 497 ~~~~~~w~~L~~-----~~~G~i~l~~~~ 520 (529)
. .+|++|.+ ...|.|.++++.
T Consensus 102 g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 102 G---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred c---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 2 47888864 235788777754
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=97.59 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=63.4
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+++++. ......||++++++.||.|||.|+|.+..+..+.|.|+|||++..++ ++||++.++|++..
T Consensus 16 d~~g~~DPYv~v~~~---~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 16 DPNGKSDPYLKIKLG---KKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCCCcEEEEEEC---CeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 345678899998852 12234688888999999999999999877777899999999998865 89999999999876
Q ss_pred c
Q 009664 496 L 496 (529)
Q Consensus 496 ~ 496 (529)
.
T Consensus 93 ~ 93 (124)
T cd04037 93 F 93 (124)
T ss_pred c
Confidence 4
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=123.42 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=79.5
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCe--EeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
-..+|.+++|-+|.+.|.+|.+|||+++.++ ++. -++..+.+|+||+|.+.|++....+....+.++|||+|..+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3667999999999999999999999999997 333 56777899999999999999888777778999999999999
Q ss_pred CCceeEEEEEECcc
Q 009664 340 SSELIGCAQVRLCE 353 (529)
Q Consensus 340 ~d~~lG~~~i~l~~ 353 (529)
+|+.+|+..++|..
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999999875
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=94.37 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=62.1
Q ss_pred CcccCCCceEEEEEEEc-cCCeeEeeecccCCCCCccCceEEEEeecC----CCCEEEEEEEECCCCCC-CeeEEEEEec
Q 009664 418 EKALKSGANGTEAIELE-KDASQKRREVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTFGK-DYMGRCILTL 491 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~-~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~D~~~~~~-d~lG~~~i~L 491 (529)
..+.++||+++++.... .....+||++++++.||+|| .|.|.+.+. ....|.|+|||++..++ ++||++.+++
T Consensus 17 ~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 17 FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 34578899999864322 22356899999999999999 688876432 25789999999999876 8999999999
Q ss_pred ccccc
Q 009664 492 TRVIL 496 (529)
Q Consensus 492 ~~l~~ 496 (529)
+++..
T Consensus 96 ~~l~~ 100 (110)
T cd04047 96 DELLK 100 (110)
T ss_pred HHHhc
Confidence 99973
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-09 Score=108.20 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=84.8
Q ss_pred ceEEEEEEEEecCCCcc------CCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v 332 (529)
..+|.|+|+.+.+++.. +.....||||++.+-. .+..+.+|++..++.||.|||+|.|.+.-++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 36899999999987421 2223579999999863 223457888999999999999999999887777899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+|+|...+|+++|+..+|+..|..|-. .++|..
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~ 580 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN 580 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence 999988899999999999999988754 356643
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=107.99 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=141.0
Q ss_pred eEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC----CCCCceeEEEEEECcccCCCceeeEEEEcccccccc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 373 (529)
..+|.++.+.+||.|.+.|.+.......|.++++++|-+. ....+|+|++...+..+........-+.+.+
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence 4588999999999999998888776677899999999764 3467899999999998865443322222221
Q ss_pred cCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEE-EccCCeeEeeecccCCCCCc
Q 009664 374 RDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIE-LEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 374 ~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~kT~v~~~t~nP~ 452 (529)
......|+|.+...-..... .-....+.. .++...+..+.+++|+.++-.. .+.....++|+++++++||.
T Consensus 117 ~~~~~~g~iti~aee~~~~~-----~~~~~~~~~---~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~ 188 (529)
T KOG1327|consen 117 GKNAGSGTITISAEEDESDN-----DVVQFSFRA---KNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQ 188 (529)
T ss_pred CccCCcccEEEEeecccccC-----ceeeeeeee---eecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCc
Confidence 12345677777665432110 000011111 1222334556778999887543 33445678999999999999
Q ss_pred cCceEEEEeec----CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC---------CccEEEE-E
Q 009664 453 WNQTFDFVVED----GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT---------KSGKLKL-H 517 (529)
Q Consensus 453 wne~f~f~v~~----~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~---------~~G~i~l-~ 517 (529)
|.+ |.....+ ..+..+.+.|||++..++ +++|++.-+++++........|...+.. .+|.+.+ .
T Consensus 189 w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~ 267 (529)
T KOG1327|consen 189 WAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDR 267 (529)
T ss_pred ccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcccCCcccccccChhhhhhhhcccccceEEehh
Confidence 996 3443322 235679999999999888 8999999999998653333333333221 1466665 5
Q ss_pred EEEEeCCCCCC
Q 009664 518 LKWMPQPIYRD 528 (529)
Q Consensus 518 ~~~~~~~~~~~ 528 (529)
++-.-.++|+|
T Consensus 268 ~~~~~~~sfld 278 (529)
T KOG1327|consen 268 FTSLDQYSFLD 278 (529)
T ss_pred eeehhhhhHHH
Confidence 55555566654
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-09 Score=110.25 Aligned_cols=97 Identities=23% Similarity=0.546 Sum_probs=79.9
Q ss_pred cCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC------------CCCe
Q 009664 416 NGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF------------GKDY 483 (529)
Q Consensus 416 ~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~------------~~d~ 483 (529)
.+..|.++||+.+.+ ++.++||+++...+||+|||.|.|.+++ ..+.|.+.|||.+.. ++|+
T Consensus 310 kdktg~sdpyvt~qv-----~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrqkl~resddf 383 (1283)
T KOG1011|consen 310 KDKTGKSDPYVTAQV-----GKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQKLTRESDDF 383 (1283)
T ss_pred cccCCCCCCcEEEee-----cccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHHHhhhccccc
Confidence 456778889987764 7778899999999999999999999997 567899999998732 3489
Q ss_pred eEEEEEecccccccceeeeEEEcCC-----CCccEEEEEEEE
Q 009664 484 MGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKW 520 (529)
Q Consensus 484 lG~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~ 520 (529)
+|+..|.+..+ .++++-||+|+. +.+|-|+|.+..
T Consensus 384 lgqtvievrtl--sgemdvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 384 LGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred ccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEEE
Confidence 99999999887 467899999974 357888876554
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=105.30 Aligned_cols=104 Identities=23% Similarity=0.310 Sum_probs=83.9
Q ss_pred ceEEEEEEEEecCCC----cc--CCCCCCCcEEEEEEe--cCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEE
Q 009664 261 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v 332 (529)
...|+|+|+.|.++. .. +.....||||++.+. +.+..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 367999999998753 11 122457999999996 2334567899999999999999999998887767899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+|+|..+.++++|++.+|+..|..|-. .++|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~ 562 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLH 562 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEcc
Confidence 999987889999999999999988754 35664
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.2e-09 Score=107.78 Aligned_cols=121 Identities=22% Similarity=0.360 Sum_probs=93.1
Q ss_pred EEEEEEEEecCCCccC----CCCCCCcEEEEEEec--CCCCeEecc-ccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 009664 263 TLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRP--LPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d----~~g~~dpyv~v~~~~--~~~~~~kT~-~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~ 335 (529)
+|.|+|+.+.++...- ....+|||+.+.+-. .+....+|+ +..|+-||.|+|+|+|.+..+.-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766532 224579999999863 223467888 568899999999999999998877899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
|..++|||+|+..+|+..|..|-.+ ++|... ....-...+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~---~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSR---EGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCC---CCccccceeEEEEEEEe
Confidence 9999999999999999999887644 455422 11223445677777664
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-09 Score=83.26 Aligned_cols=84 Identities=24% Similarity=0.444 Sum_probs=69.5
Q ss_pred EEEEEEEecCCCccC---CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 264 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
|.|+|..|+++...+ ..+++|||+.+.++ +..+.||++ +.||.|||+|.|.+.. ...+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC-Ce
Confidence 579999999999877 67889999999997 334778876 5899999999999943 5689999999865 35
Q ss_pred CceeEEEEEECcccC
Q 009664 341 SELIGCAQVRLCELE 355 (529)
Q Consensus 341 d~~lG~~~i~l~~l~ 355 (529)
.-.+|..-+.++++.
T Consensus 73 ~~Pi~llW~~~sdi~ 87 (109)
T cd08689 73 PVPVGLLWLRLSDIA 87 (109)
T ss_pred ecceeeehhhHHHHH
Confidence 567899888888874
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=104.57 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=93.9
Q ss_pred eEEEEEEEEecCCCc---c---CCCCCCCcEEEEEEec--CCCCeEeccccCCCCCCee-ccEEEEEEecCCCCEEEEEE
Q 009664 262 GTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVRI 332 (529)
Q Consensus 262 g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~l~i~v 332 (529)
..|+|+|++|.+|+. . +.....||||++.+.+ .+...++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 1223479999999863 2345679999999999999 99999999887767899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
+|+|..+.|+++|++.+|+..|..|-. .++|.... ...-..++|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence 999988889999999999999988754 45664321 11223467888887764
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=100.98 Aligned_cols=122 Identities=25% Similarity=0.441 Sum_probs=100.5
Q ss_pred eEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeec-cEEEEEEecC--CCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~--~~~~l~i~v~d~~~ 337 (529)
|.|.|+|..|++|+-+|.. ...|.||.+.+. ...+||.+..+++||.|| +.|.|.|.+. .+..|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 6788999999999998854 467999999997 778999999999999999 4689998654 46689999999999
Q ss_pred CCCCceeEEEEEECcccC----------CCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 338 IQSSELIGCAQVRLCELE----------PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
.+.+|-||.+.++++.|. .+.....|+++... -...+|+|.+-+..--+
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-----ihgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-----IHGIRGEINVIVKVDLF 138 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-----cccccceeEEEEEEeeh
Confidence 999999999999998872 23456789998643 25678999877655433
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-08 Score=103.80 Aligned_cols=100 Identities=16% Similarity=0.278 Sum_probs=85.4
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCC-CCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
+.+++|+.|.+ .+...-||+++.+. .||+|||.|...|.... ..++|.|+|.+.+|..+||.+.||..+++...
T Consensus 45 ~~~~~y~tv~~----~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~ 119 (808)
T PLN02270 45 GESQLYATIDL----EKARVGRTRKIENEPKNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGE 119 (808)
T ss_pred CCCCceEEEEe----CCcEEEEEeecCCCCCCCccccceEEeeccCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCCC
Confidence 46779998876 45567899999874 69999999999997654 67999999999999999999999999999988
Q ss_pred eeeeEEEcCCC------CccEEEEEEEEEeCC
Q 009664 499 EYTDCFELDGT------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 499 ~~~~w~~L~~~------~~G~i~l~~~~~~~~ 524 (529)
.+++||++.+. +..+|+++++|+|+.
T Consensus 120 ~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 120 EVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 89999999753 235999999999863
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-09 Score=106.93 Aligned_cols=97 Identities=31% Similarity=0.478 Sum_probs=84.5
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC----CeEeccccCCCCCCeeccEEEEEEecC----CCCEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 330 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~l~i 330 (529)
.+...|.|.|+.|+++.+-|.+|.+||||++.+.|... ...+|+++.+|+||+|+|+|+|.|... .+..+.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 46678899999999999999999999999999985332 357999999999999999999998643 2447999
Q ss_pred EEEECCCCCCCceeEEEEEECcccC
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELE 355 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~ 355 (529)
.|.|+|-.+.+||-|++.+.|+++.
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCC
Confidence 9999999999999999999998874
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.71 E-value=9e-08 Score=98.57 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=77.5
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|++|.+........++||++..++.||+|||.|+|.+..|.-+.|.|+|+|+|..++ +++|+..+|++.+...
T Consensus 434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G-- 511 (537)
T PLN02223 434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEG-- 511 (537)
T ss_pred CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCC--
Confidence 4568999998766666667788888889999999999999998888999999999998765 8999999999998654
Q ss_pred eeeEEEcCCC-----CccEEEEEEEE
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
.++.+|.+. ....+.++++|
T Consensus 512 -yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 512 -IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred -ceeEeccCCCcCCCCCceEEEEEEe
Confidence 356677543 23455666665
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-08 Score=84.29 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=63.9
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCC--CccCceEEEEeec-----------------------CCCCEEEEEEEE
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLN--PIWNQTFDFVVED-----------------------GLHDMLIAEVWD 475 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~~-----------------------~~~~~L~i~V~D 475 (529)
.+|+|+++.+... ...+++|.+.+++.| |+||+.|.|++.- .....|.++|||
T Consensus 24 ~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 24 MSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred ccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 4789999986554 466789999999999 9999999998754 135689999999
Q ss_pred CCCCCC-CeeEEEEEecccccccc
Q 009664 476 HDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 476 ~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
.|.++. |+||++.++|+.+.+..
T Consensus 102 ~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 102 NDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred CcccCCCCcceEEEEEhhhccccc
Confidence 999876 89999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=100.86 Aligned_cols=121 Identities=14% Similarity=0.315 Sum_probs=92.5
Q ss_pred cceEEEEEEEEecCCCcc----CC-CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNK----DL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD 334 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~----d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d 334 (529)
-.|.|.++|.+|+.+... +. ....|||+.+.+. +.+..|| .+..||.|+|+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999844322 11 1123999999997 3456777 556699999999999877654579999988
Q ss_pred CCCCCCCceeEEEEEECcccCCCce-eeEEEEcccccccccCCccc-cEEEEEEEEEEcccC
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYR-GQVHLELLYCPFGME 394 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~-G~i~l~l~~~p~~~~ 394 (529)
...+||.+.+|..++..+.. .+.|+++..... .... .+|+++++|.|....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG----KPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC----CCCCCCEEEEEEEEEEhhhC
Confidence 26799999999999988866 899999975432 1122 599999999998754
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-08 Score=99.96 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=94.4
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEec---CCCCeEeccccCCCCCCeec-cEEEEEEecCCCCEEEEEEEECCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG 337 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~~~~~l~i~v~d~~~ 337 (529)
-.|.|.|+.|++|+... .|-..||+.+.+.. +.+..++|.++.|++||+|| |.|+|.+.++.-..|+|.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46789999999999543 35567999999862 22345666677999999999 999999999987899999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
++...|||++.+|+..+..|-. ..+|.... .+.-....|.+.+...|..+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y---SEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY---SEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc---hhhhhhhhheeeeEeccccC
Confidence 9988899999999998876642 23443211 11223356777777777653
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=99.33 Aligned_cols=96 Identities=20% Similarity=0.314 Sum_probs=76.9
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccccee
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY 500 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~ 500 (529)
.++|++|.+........++||+++.++.||+|||.|+|.+..+.-+.+.|+|+|+|..++ +++|+..+|++.+...-
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 468999987766555677899999999999999999999988877889999999998765 89999999999996553
Q ss_pred eeEEEcCC---CCccEEEEEEEE
Q 009664 501 TDCFELDG---TKSGKLKLHLKW 520 (529)
Q Consensus 501 ~~w~~L~~---~~~G~i~l~~~~ 520 (529)
+|++|.+ ..-+.++|-+.+
T Consensus 575 -R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 575 -RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred -eeEeCcCCCCCCCCCEEEEEEE
Confidence 5889963 333455554443
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=76.72 Aligned_cols=82 Identities=32% Similarity=0.521 Sum_probs=68.1
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc-ccc
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI-LEG 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~-~~~ 498 (529)
..++|+.+.+.. ...++|+++.++.||.||+.|.|.+.......+.++|||++..+. .++|++.+++.++. ...
T Consensus 19 ~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~ 94 (102)
T cd00030 19 KSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK 94 (102)
T ss_pred CCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCC
Confidence 556888777532 467899999999999999999999986567789999999998764 89999999999998 555
Q ss_pred eeeeEEEc
Q 009664 499 EYTDCFEL 506 (529)
Q Consensus 499 ~~~~w~~L 506 (529)
...+|++|
T Consensus 95 ~~~~~~~l 102 (102)
T cd00030 95 EGELWLPL 102 (102)
T ss_pred cCcceecC
Confidence 66888875
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-08 Score=100.81 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=91.9
Q ss_pred EEecCCCccCCCCCCCcEEEEEEec-CCCCeEeccccCCCCCCeeccEEEEEEecC---------------CCCEEEEEE
Q 009664 269 VQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQHLVVRI 332 (529)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~~l~i~v 332 (529)
+.++++-+.+ ++.+|||+++.... ...+..+|+++++|.+|.|+|.|+|.+... ..-.|++.+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4444555544 45699999999862 222457999999999999999999998644 234688999
Q ss_pred EE-CCCCCCCceeEEEEEECcccCCCceeeEEEEccccccc--ccCCccccEEEEEEEEEE
Q 009664 333 YD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV--QRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 333 ~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~~~~~~G~i~l~l~~~p 390 (529)
|+ .+....++|+|++.+++..+........||.|++.... ..++...|.+++.++|..
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 99 56666699999999999998877777899999876432 223456689999999963
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=76.43 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=62.9
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|+++++.... ...++|+++.++.||.|||.|.|.+..+....|.|+|||++..+. ..+|.+.+++.++.....
T Consensus 20 ~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 20 KSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 45688888763221 357899999999999999999999987657899999999998764 799999999999866544
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=95.22 Aligned_cols=173 Identities=25% Similarity=0.369 Sum_probs=112.2
Q ss_pred EEEEEEEEEecCCCCCCcceeEEEEeccceeeeEEEEEcccccccCCcchH-HHHHHHHHHHhhhcccccccccCCC--C
Q 009664 174 FTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSD-SIEATIHDAIEDSITWPVRKIVPIL--P 250 (529)
Q Consensus 174 ~~g~~rv~l~pl~~~~P~~~~v~~~f~~~p~l~f~l~~~g~~~~~~P~l~~-~~~~~i~~~i~~~~~~P~~~~ipl~--~ 250 (529)
-.|+..++..-+.|.|-....+.|.|++.+.+.|.++..+.. .+.+.+ .+.+...+.+..+.. -.....++. +
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~---~~~l~~~dflg~~~c~l~~ivs-~~~~~~~l~~~~ 116 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR---TPDLSSADFLGTAECTLSQIVS-SSGLTGPLLLKP 116 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc---cCCcchhcccceeeeehhhhhh-hhhhhhhhhccc
Confidence 346777888878888887788999999999999999887543 111111 111111111111110 000011110 0
Q ss_pred CCccccccCcceEEE-------------EEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeecc
Q 009664 251 GDYSELELKPVGTLE-------------VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNE 314 (529)
Q Consensus 251 ~~~~~~~~~~~g~L~-------------V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne 314 (529)
+ .....|.+. .-..+|++|.++|..+++|||..++-..+.+ ..++|++.++++||.|.+
T Consensus 117 ~-----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~ 191 (529)
T KOG1327|consen 117 G-----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP 191 (529)
T ss_pred C-----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc
Confidence 0 001112222 2235689999999999999999888653222 258999999999999998
Q ss_pred EEEEEEecCC----CCEEEEEEEECCCCCCCceeEEEEEECcccCC
Q 009664 315 HFEFIVEDES----TQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 315 ~f~~~v~~~~----~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~ 356 (529)
|.+.....+ ...+.+.+||++..++++++|.+..++.++..
T Consensus 192 -~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 192 -FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred -cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 666654432 35788999999998899999999999998864
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-08 Score=76.94 Aligned_cols=67 Identities=28% Similarity=0.548 Sum_probs=54.5
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEE
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCI 488 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~ 488 (529)
+..++|+++.+... ...+++|++++++.+|.|||.|.|.+..+..+.|.|+|||++..++ ++||++.
T Consensus 18 ~~~~~yv~v~~~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 18 GKPDPYVRVSVNGS--ESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SSBEEEEEEEEETT--TCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred Ccccccceeeccee--eeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 35557777765222 2267999999999999999999999887777779999999999885 8999873
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.6e-08 Score=104.55 Aligned_cols=108 Identities=26% Similarity=0.407 Sum_probs=91.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEE---EecCCCCEEEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYD 334 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~---v~~~~~~~l~i~v~d 334 (529)
..|+|.|-|..|++|.-..-+..+||||+.|+.|+..+ +.||+++++|.||.|||...+. ......+.|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999965554567999999999977654 6899999999999999987665 223445789999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
.+....+.++|.+.++|.++...++...||.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999999999999999999988777777999985
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.5e-07 Score=92.90 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=83.8
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCCCCCcc-CceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDCLNPIW-NQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
.++|++|.+........++||++++++.||+| ||.|+|.+..+.-+-|.|.|+|++..+. +++|+..+|++.|...
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~G-- 535 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSG-- 535 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCC--
Confidence 56899998876655667789999988899999 9999999988888899999999987654 8999999999999544
Q ss_pred eeeEEEcCCC-----CccEEEEEEEEEeCCCCC
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKWMPQPIYR 527 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~~~~~~~~ 527 (529)
.+..+|.+. ....+.+++.+.+...|+
T Consensus 536 -YR~VpL~~~~G~~l~~atLfv~~~~~~~~~~~ 567 (567)
T PLN02228 536 -VRAVRLHDRAGKAYKNTRLLVSFALDPPYTFR 567 (567)
T ss_pred -eeEEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence 345566432 346788899998888874
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-07 Score=93.52 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=76.2
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|++|.+........++||++..++.||+|||.|+|.+.-|.-+.|.|+|+|++..++ +++|+..+|++.|...-
T Consensus 495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy- 573 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI- 573 (598)
T ss_pred CCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc-
Confidence 3578999998766555566799998899999999999999988888999999999998654 89999999999996543
Q ss_pred eeeEEEcCCC-----CccEEEEEEEE
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
+..+|.+. ....+.+++.|
T Consensus 574 --R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 574 --HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred --ceEeccCCCcCCCCCCeeEEEEEe
Confidence 45666543 13355556554
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.9e-07 Score=93.02 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=76.0
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccce
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 499 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~ 499 (529)
..++|++|.+........++||+++.++.||+|||.|+|.+..+.-+-|.|.|+|+|..+. +++|+..+|++.+...
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G-- 555 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG-- 555 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCc--
Confidence 4568999988666555667899999999999999999999988888899999999987654 8999999999998654
Q ss_pred eeeEEEcCCC-----CccEEEEEEEE
Q 009664 500 YTDCFELDGT-----KSGKLKLHLKW 520 (529)
Q Consensus 500 ~~~w~~L~~~-----~~G~i~l~~~~ 520 (529)
.+..+|.+. ....+.+.+.|
T Consensus 556 -yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 556 -IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred -cceEEccCCCcCCCCCeeEEEEEEe
Confidence 345666543 23355555554
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-07 Score=93.42 Aligned_cols=101 Identities=22% Similarity=0.363 Sum_probs=79.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
+...+|+++|.+..+.....+.+|+++. ++-||.|+|.|+|.+..|.-+-|.|.|+|++..++ |++|+..+|++++..
T Consensus 638 ~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~ 717 (746)
T KOG0169|consen 638 GEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQ 717 (746)
T ss_pred cccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhC
Confidence 3467799999876666666778999554 67899999999999999999999999999999885 999999999999965
Q ss_pred cceeeeEEEcCCC-----CccEEEEEEEEEe
Q 009664 497 EGEYTDCFELDGT-----KSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~~~w~~L~~~-----~~G~i~l~~~~~~ 522 (529)
.- +-.+|.+. ....+.+++.|.+
T Consensus 718 Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 718 GY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred ce---eeeeecCCCCccccceeEEEEEEEec
Confidence 53 34555442 3456667777654
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-07 Score=99.81 Aligned_cols=216 Identities=19% Similarity=0.210 Sum_probs=134.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---------CCCEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVV 330 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------~~~~l~i 330 (529)
..-.+++.+.+|+.|...|..+.+|||+.+... ++.+.|.++.+|+||.|+++..|.-.+. .-..+.+
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~---~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFC---GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcc---cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 345678888999999999999999999999987 7788999999999999999887752111 1236889
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccC---------C---CCC
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME---------N---VFT 398 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~---------~---~~~ 398 (529)
++||.++.+.++++|++.....-... ...-.|+++-+ ++...|.+.++......+.. . ..+
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r------g~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~vp 353 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR------GAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLVP 353 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-CCccceEEeec------ccccccchhHHHHHHhhcCCCCCCCcccccceeccc
Confidence 99999999999999998765443222 44567888743 34455554443321111100 0 000
Q ss_pred CCCCCCCcchh-------hhhhhhcCCcccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEee---c--CC
Q 009664 399 NPFAPNFSMTS-------LEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVE---D--GL 465 (529)
Q Consensus 399 ~~~~~~~~~~~-------l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~---~--~~ 465 (529)
....+.+.... ++......-.....|-+ +.. .+.++.++..+. .-.||.|+..|-+..- + ..
T Consensus 354 ~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~----~~e-~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y 428 (1105)
T KOG1326|consen 354 KKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPAL----LVE-FGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELY 428 (1105)
T ss_pred cCCCcceeeeeeehhhhhhcccccccccccCCcce----eEe-eCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhh
Confidence 00111111111 11111111111122222 122 344444555554 4779999987666442 2 24
Q ss_pred CCEEEEEEEECCCCCC-CeeEEEEEe
Q 009664 466 HDMLIAEVWDHDTFGK-DYMGRCILT 490 (529)
Q Consensus 466 ~~~L~i~V~D~~~~~~-d~lG~~~i~ 490 (529)
...+.++|.|.+.+|. ...|++.+.
T Consensus 429 ~ppl~akvvd~~~fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 429 MPPLNAKVVDLRQFGRMEVVGQCKIL 454 (1105)
T ss_pred CccceeEEEecccccceeehhhhcch
Confidence 5689999999999987 899998876
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-07 Score=99.34 Aligned_cols=122 Identities=17% Similarity=0.179 Sum_probs=92.0
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcc--hhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSM--TSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
++..|+|.+++.|.-. .+.+ .-++.+.....+..+++|++.++...-....++||+++++|+||.|
T Consensus 1509 ~~iggqV~LsIsY~~~------------~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTf 1576 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYNNG------------TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTF 1576 (1639)
T ss_pred cccCceEEEEEEEcCc------------eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCch
Confidence 4566899999999721 1111 1111111112334678999999998887888999999999999999
Q ss_pred CceEEEE---eecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 454 NQTFDFV---VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 454 ne~f~f~---v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
||...+. ........|.++||..+.... .++|.+.|+|.++...++..+||+|...
T Consensus 1577 nE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1577 NEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 9988776 233356789999999988765 7999999999999887777899999764
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=90.50 Aligned_cols=96 Identities=22% Similarity=0.374 Sum_probs=78.8
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeec-ccCCCCCccC-ceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREV-VNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v-~~~t~nP~wn-e~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
..+..+|++.|.++.......+++|.+ +.+.+||+|| |.|+|.|.+|.-+-|.+.|+|.|.+++ .+||++..|+..+
T Consensus 1081 gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1081 GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhh
Confidence 344567999999888877766666655 5578999999 999999999999999999999999998 8999999999998
Q ss_pred cccceeeeEEEcCCCCccEEEE
Q 009664 495 ILEGEYTDCFELDGTKSGKLKL 516 (529)
Q Consensus 495 ~~~~~~~~w~~L~~~~~G~i~l 516 (529)
... -+-.+|+++.+-++.|
T Consensus 1161 k~G---fRsVpLkN~ySEdlEL 1179 (1267)
T KOG1264|consen 1161 KSG---FRSVPLKNGYSEDLEL 1179 (1267)
T ss_pred hcc---ceeeecccCchhhhhh
Confidence 543 4668888876665553
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-06 Score=88.67 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccce-ee
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE-YT 501 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~-~~ 501 (529)
++|+.|.+ .+...-|| .+..||+|||.|...|....+..++|.|+| +..+||.+.||..+++..+. ++
T Consensus 37 ~~y~tv~~----~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~ 105 (758)
T PLN02352 37 ATYVTIKI----GNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFIN 105 (758)
T ss_pred CceEEEEe----CCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccc
Confidence 68888775 33445677 555699999999999987666689999999 35799999999999988766 89
Q ss_pred eEEEcCCCC----c-cEEEEEEEEEeCC
Q 009664 502 DCFELDGTK----S-GKLKLHLKWMPQP 524 (529)
Q Consensus 502 ~w~~L~~~~----~-G~i~l~~~~~~~~ 524 (529)
.||++.+.. . .+|+++++|+|+.
T Consensus 106 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 106 GFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred eEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 999997531 3 5999999999974
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=81.44 Aligned_cols=104 Identities=24% Similarity=0.337 Sum_probs=82.5
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEec--CCCCEEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~v~d 334 (529)
....-|.|++++|.+|..+|.+|.+|||+..++.++.+. +++|.+.+++.||+||+.|.|.+.. .....+.+.|||
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd 309 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD 309 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence 456778999999999999999999999999999866554 5788889999999999999998753 335578999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEE
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWL 364 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 364 (529)
++..+..+++|-+...+. ..+...++|.
T Consensus 310 ~~~G~s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred cCCCcCccCCCccccccc--ccchhhcCcc
Confidence 998778889988755543 3333344443
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=85.19 Aligned_cols=89 Identities=17% Similarity=0.345 Sum_probs=73.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.-.|+..+++++|+ ++ ..|+|..+-.- +.+.+||.+.++|.||+||+...|.+........++.|||.+++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEe--cceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 34699999999997 33 35898655432 37899999999999999999999999776656679999999999
Q ss_pred CCCceeEEEEEECcccCC
Q 009664 339 QSSELIGCAQVRLCELEP 356 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~ 356 (529)
++++++|.|+++|.++..
T Consensus 122 s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CHHHhhhheeecHhhccH
Confidence 999999999998877643
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.1e-05 Score=63.93 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=63.9
Q ss_pred CCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEee--------c-------CCCCEEEEEEEECCCCC-------
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVE--------D-------GLHDMLIAEVWDHDTFG------- 480 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--------~-------~~~~~L~i~V~D~~~~~------- 480 (529)
++|+++.+--. ...+.++|+++.++-.|.||..++|+|+ + ...+.+.++||..+..+
T Consensus 34 N~yv~i~lSFl-~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 34 NSYVTIHLSFL-PEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred ceEEEEEeccC-CCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 36777664333 3455789999999999999999999986 1 13568999999876432
Q ss_pred ---CC-eeEEEEEecccccccc-eeeeEEEc
Q 009664 481 ---KD-YMGRCILTLTRVILEG-EYTDCFEL 506 (529)
Q Consensus 481 ---~d-~lG~~~i~L~~l~~~~-~~~~w~~L 506 (529)
+| .||.+.||+.+++.+. .+..||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 13 6999999999998764 57999985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=76.30 Aligned_cols=227 Identities=15% Similarity=0.261 Sum_probs=153.3
Q ss_pred CCCCceecCCC-------cchHHHHHHHHHHchhh--HHHHHHHH----HHhHHHHHhhcC-CCccceEEEEEEecCCCC
Q 009664 58 FYPSWVVFSHR-------QKLTWLNHHLEKLWPYV--NEAASELI----KSSVEPVLEQYR-PFILSSLKFSKFTLGTVA 123 (529)
Q Consensus 58 ~~p~w~~~~~~-------E~~~WlN~~l~~~Wp~~--~~~~~~~~----~~~~~~~l~~~~-p~~i~~~~~~~~~lG~~~ 123 (529)
..|.|..+... -.|-.+|.++..++.-. .+++...+ ...+...+.... ...+..+...++-+|..-
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 46778765321 12445566666666521 22233333 333444444433 348899999999999999
Q ss_pred CeEeeEEEEecC-------------------------CCeEEEEEEEEEecCceEEEEEEeeecceeeEEEEEEEEEEEE
Q 009664 124 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 178 (529)
Q Consensus 124 P~i~~i~~~~~~-------------------------~~~~~ld~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~ 178 (529)
|.+++.+++.-+ -..+.+-+|+.|.|+.--++++....+....+.|+-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998521 1234566789999987767777766777778899999999999
Q ss_pred EEEEecCCCCCCcceeEEEEeccceeeeEEEEE--cccccccCCcchHHHHHHHHHHHhhhccccccccc--CCCC---C
Q 009664 179 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILP---G 251 (529)
Q Consensus 179 rv~l~pl~~~~P~~~~v~~~f~~~p~l~f~l~~--~g~~~~~~P~l~~~~~~~i~~~i~~~~~~P~~~~i--pl~~---~ 251 (529)
|+.+. .-| ...++++|...|.+...++. .|..+- --+.+.+...++.+++...+||++..- |..+ +
T Consensus 241 r~~~~----r~p-y~hw~~sf~G~P~~e~di~s~~qg~qLQ--~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQP-YHHWTFSFVGQPIFETDINSQIQGHQLQ--RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----ecc-ceeeeeeeccCchhhhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99887 344 45689999999976655443 232211 013467788888889999999997542 3332 1
Q ss_pred -----CccccccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEec
Q 009664 252 -----DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP 293 (529)
Q Consensus 252 -----~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 293 (529)
..+.....+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 11223346789999999999888644 57888999998864
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.9e-05 Score=62.25 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=53.7
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~ 497 (529)
.+.+++|+.+.+ ....+.||++ +.||.|||.|+|.+. ....+.+.|||+.....--+|-+-+.++++...
T Consensus 20 ~~~~etyV~IKv----ed~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 20 SKRPETYVSIKV----EDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ccCCCcEEEEEE----CCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeecceeeehhhHHHHHHH
Confidence 345678888875 2334778877 589999999999994 467899999999652224699999999998743
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=6e-05 Score=76.49 Aligned_cols=95 Identities=24% Similarity=0.415 Sum_probs=75.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc-eEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ-TFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne-~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++.+.+ +...+||.|..+++||.||. -|.|.+.|. .++.|.|.++|++..+. |.||.+.|+++-+.
T Consensus 23 d~tdafveik~-----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 23 DLTDAFVEIKF-----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLC 97 (1169)
T ss_pred ccchheeEEEe-----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHH
Confidence 45567776664 66789999999999999996 589998754 67899999999999886 99999999999775
Q ss_pred ccc----------eeeeEEEcCC---CCccEEEEEEE
Q 009664 496 LEG----------EYTDCFELDG---TKSGKLKLHLK 519 (529)
Q Consensus 496 ~~~----------~~~~w~~L~~---~~~G~i~l~~~ 519 (529)
-++ -+..|||+-+ +-.|+|.+-++
T Consensus 98 ~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 98 LEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred HHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 321 2489999975 45788887654
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.8e-05 Score=61.07 Aligned_cols=103 Identities=17% Similarity=0.356 Sum_probs=74.0
Q ss_pred EEEEEEEecCCCccC-------C------CCCCCcEEEEEEec-CCCCeEeccccCCCCCCeeccEEEEEEe--------
Q 009664 264 LEVKLVQAKGLTNKD-------L------IGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE-------- 321 (529)
Q Consensus 264 L~V~v~~a~~L~~~d-------~------~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~Wne~f~~~v~-------- 321 (529)
|.|.|++|.+|.... . .---++|+++.+.- .+++..+|+++.++-.|.|+.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888876421 0 01248999998653 2356789999999999999999999864
Q ss_pred c-------CCCCEEEEEEEECCCC----------CCCceeEEEEEECcccC-CCceeeEEEEc
Q 009664 322 D-------ESTQHLVVRIYDDEGI----------QSSELIGCAQVRLCELE-PGKVKDVWLKL 366 (529)
Q Consensus 322 ~-------~~~~~l~i~v~d~~~~----------~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 366 (529)
+ .....+.++||+.+.. .+|-.||.+.+|+.+|. .......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1245789999997532 24568999999999974 44556778764
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.3e-05 Score=58.01 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=69.0
Q ss_pred EEEEEEecCCCccCCCC-CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEe--cCCCCEEEEEEEECCCCCCC
Q 009664 265 EVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE--DESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~--~~~~~~l~i~v~d~~~~~~d 341 (529)
-|+++.|++|.-....| .+.-|++--+.-...-..||++.++..||+|+|+|.|.+. ...+-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47899999987544322 3445665444322334688999999999999999999864 3445578889988 44577
Q ss_pred ceeEEEEEECcccCCCceeeEEEE
Q 009664 342 ELIGCAQVRLCELEPGKVKDVWLK 365 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~ 365 (529)
+.||.|.+.++++-.. +.++|..
T Consensus 80 e~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHH-Hhhhhhc
Confidence 8999999999886442 3445543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00017 Score=55.24 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCeeEeeecccCCCCCccCceEEEEee--cCCCCEEEEEEEECCCCCCCeeEEEEEecccccccceeeeEEE
Q 009664 436 DASQKRREVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFE 505 (529)
Q Consensus 436 ~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~~~~~w~~ 505 (529)
..-..||+++....||.|+|+|.|.+. +..+-.|.+.|+.. .-.++.||.+.++|+++-. .+.++|..
T Consensus 33 kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 33 KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-TPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-CCccceeeEEEeecccCCH-HHhhhhhc
Confidence 334579999999999999999999875 44667899999983 3245899999999999743 33466754
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00026 Score=68.86 Aligned_cols=110 Identities=24% Similarity=0.378 Sum_probs=85.7
Q ss_pred CcceEEEEEEEEecCCCccCC-CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEE-
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD- 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d- 334 (529)
...|.|.|.|++|++|..+.- ...++||++||+.+.+. -+.+|+...+|.+|.+.+...|.-. +....|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 467999999999999987543 23689999999985433 2568888899999988776666543 345689999994
Q ss_pred CCCCCCCceeEEEEEECcccCCCc-eeeEEEEcccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVKD 369 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 369 (529)
+.+..++.|+|.+.+-+.+|.... ....||+|...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 677778889999999999996655 67789998653
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0005 Score=67.56 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=92.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEe--cCCCCeEeccccCCCCCCeeccEEEEEEecC---C--------CC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---S--------TQ 326 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~--------~~ 326 (529)
....|.+.|+++.+++........|-|+++.+. .+..++.+|.++++|.+|.|+|.|.+.+... . ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 445677788888877654322235778888764 2345678899999999999999999988652 1 23
Q ss_pred EEEEEEEECCCC-CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 327 HLVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 327 ~l~i~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.+.|++|+...+ ..|.++|.|.+.|..|...-.....++|.. ......|.|.+.+...
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence 589999998775 578899999999998877666667777742 2345668998888875
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0014 Score=70.36 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=56.5
Q ss_pred EEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 432 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
....|.+++||...++|.||+||+...|.+........++.|||++.++. +++|.+.++|.++...+
T Consensus 74 ~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 74 CVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred EEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHH
Confidence 34578999999999999999999998888864444446999999999887 89999999998876553
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.024 Score=49.35 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred CcceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCC------------
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES------------ 324 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~------------ 324 (529)
+..-.|.++|..++-....-. .+..+.-..+++. -++++++|+.+..+.+|.++|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 345678999988876543211 1445555555554 3378999999999999999999999986442
Q ss_pred -CCEEEEEEEECCCCCCCceeEEEEEECcccCCCcee--eEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 325 -TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK--DVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 325 -~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
.+.+.+.|---|..+...++|+-.++...+...... .....|.... .....+.|-|.+++...|..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecCC
Confidence 346788888777766678999999999887655443 3333333211 22345789999999988753
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.002 Score=62.82 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=71.7
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEE-CCCCCC-CeeEEEEEecccccccc
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD-HDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D-~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
.+++|++||.+..+....+.||+...+|.+|.|-+...|.-. +....|.+.||- +..... .+||.++|-|.++-...
T Consensus 290 ~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~ 368 (405)
T KOG2060|consen 290 LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS 368 (405)
T ss_pred ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccccccchHHHhhHHHHHhhhhcccc
Confidence 677999999988888888899999999999998887777644 466789999994 444333 69999999999987665
Q ss_pred -eeeeEEEcCCC
Q 009664 499 -EYTDCFELDGT 509 (529)
Q Consensus 499 -~~~~w~~L~~~ 509 (529)
....||+|-+.
T Consensus 369 ~~~igwyKlfgs 380 (405)
T KOG2060|consen 369 SPVIGWYKLFGS 380 (405)
T ss_pred ccceeeeeccCC
Confidence 45899999874
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.084 Score=52.52 Aligned_cols=119 Identities=12% Similarity=0.221 Sum_probs=87.3
Q ss_pred EEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-------CCCCEEEEEEEECC
Q 009664 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE 336 (529)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-------~~~~~l~i~v~d~~ 336 (529)
+.|+|++|++.+... ...-.+..+++ +....|..+..+..|.||....+.+.. .....|++++|-.|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998652 23445666665 778889999999999999988887642 23568999999987
Q ss_pred -CCCCCceeEEEEEECccc---CCC--ceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 337 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 337 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
..+..+.+|.+.++|... ..+ .....|++|..... +-.+..-+|.+.+....
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIED 133 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEec
Confidence 456788999999999998 555 46778999975321 11233456777776654
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.017 Score=57.06 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-----------CCCEEEEEEEECCCCC--CCeeEEEE
Q 009664 422 KSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-----------LHDMLIAEVWDHDTFG--KDYMGRCI 488 (529)
Q Consensus 422 ~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-----------~~~~L~i~V~D~~~~~--~d~lG~~~ 488 (529)
-+.|+++.+....-..++.||.+++.|.+|.|+|.|...+... ....+.|+++.+..+- +.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 3456666644333345678999999999999999999998642 1236899999998773 36999999
Q ss_pred EecccccccceeeeEEEcCCC---CccEEEEEEEEE
Q 009664 489 LTLTRVILEGEYTDCFELDGT---KSGKLKLHLKWM 521 (529)
Q Consensus 489 i~L~~l~~~~~~~~w~~L~~~---~~G~i~l~~~~~ 521 (529)
+.|..|...-.+...++|.++ ..|.+.+++..+
T Consensus 468 ikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999998777677889999864 358888877665
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.033 Score=60.16 Aligned_cols=92 Identities=25% Similarity=0.441 Sum_probs=69.3
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC----CeEecccc-CCCCCCeeccE-EEEE-EecCCCCEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----KTKKSKTI-NNDLNPIWNEH-FEFI-VEDESTQHLVVRI 332 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----~~~kT~~~-~~t~nP~Wne~-f~~~-v~~~~~~~l~i~v 332 (529)
-.+.+.|+|++|.-|..++ ...||.+.+-..+. +.++|+++ .++.||+|+|. |.|. |--+.-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3578999999999998765 34799998753322 35778876 57899999974 7765 3233345799999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCce
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKV 359 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~ 359 (529)
|+.++ .+||+=.+|+..+..|-.
T Consensus 777 yeEgg----K~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 777 YEEGG----KFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred eccCC----ceeeeeccchhcccCcce
Confidence 99764 699999999999887754
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.93 Score=39.26 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=76.0
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEecccc-CCCCCCeeccEEEEEEec---C-----CCCEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED---E-----STQHLVVR 331 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~Wne~f~~~v~~---~-----~~~~l~i~ 331 (529)
.=.+.+++.+..+++. ....-|++...+.......+|+.. ..+..-.|||.|.+.+.- . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467788899988875 122233443333111002333332 334557999999888531 1 23468899
Q ss_pred EEECCCCCCCceeEEEEEECcccCCC--ceeeEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
|+....-++...+|.+.++|.+.... ......++|.. .......|++++.+.+..
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR 138 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence 99875333336899999999998663 44556666643 235668899999888765
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.2 Score=43.70 Aligned_cols=92 Identities=24% Similarity=0.343 Sum_probs=71.0
Q ss_pred EEccCCeeEeeecccCCCCCccCceEEEEeecC-------------CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-------------LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 432 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------------~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
....+.++++|+.+.-+.+|.|+|.|-|.++.. ..+.+++.|.-.+..++ .++|+-.++...++..
T Consensus 39 ~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 39 HLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred EEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 345677899999999999999999999998632 23579999998888766 7999999999999887
Q ss_pred cee--eeEEEcCCC------CccEEEEEEEEEeC
Q 009664 498 GEY--TDCFELDGT------KSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 ~~~--~~w~~L~~~------~~G~i~l~~~~~~~ 523 (529)
+.. .--..|.|. ..|-+.++++-.|.
T Consensus 119 ~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 119 GNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 764 444555543 35777777766654
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.73 Score=40.71 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=58.9
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~~-~~~~l~i~v~d~ 335 (529)
..++|+|++++++.-.+ .+|-|+.+.+--++. ....|+.+.. .++.|||..+|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 467888886642221 1223443333 67999998888753 32 356899999997
Q ss_pred CCCC----CCceeEEEEEECcc
Q 009664 336 EGIQ----SSELIGCAQVRLCE 353 (529)
Q Consensus 336 ~~~~----~d~~lG~~~i~l~~ 353 (529)
...+ ....+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 5421 23469999999865
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.26 Score=42.86 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred eEeeecccCC-CCCccCceEEEEee--c-CCCCEEEEEEEECCCCCC-----CeeEEEEEecccc
Q 009664 439 QKRREVVNDC-LNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFGK-----DYMGRCILTLTRV 494 (529)
Q Consensus 439 ~~kT~v~~~t-~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~~-----d~lG~~~i~L~~l 494 (529)
...|+.+.-+ .++.|||.++|.+. + |.++.|.|+||+.+.... ..||.+.++|-+.
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 3466666655 79999999999874 3 478899999998766443 4899999999885
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.36 Score=43.45 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=58.5
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEE--ecC-CCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIV--EDE-STQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v--~~~-~~~~l~i~v~d~ 335 (529)
..++|+|+.+.++.-.+ ...+-|+.+.+--++. ....|+....+.++.|||...|.+ .+. ....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 36889999999998522 3456677765532111 134565555456799999988875 332 356899999996
Q ss_pred CCCC----------------CCceeEEEEEECcc
Q 009664 336 EGIQ----------------SSELIGCAQVRLCE 353 (529)
Q Consensus 336 ~~~~----------------~d~~lG~~~i~l~~ 353 (529)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 23577887777754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.13 Score=49.22 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=71.4
Q ss_pred CcceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
...|+|.+++..+++|.-... .-.-+-||++... ...+.+|.+.....-=.|.|+|+..+.+. ..+.+-||.|+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~ 123 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP 123 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence 356999999999999975332 2345889998875 22234444444444448999999988654 36888899988
Q ss_pred CCCCCceeEEEEEECccc-CCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.-.++++.-...+.+..+ ..++.+. +.| .-.++|++.+.+.+.
T Consensus 124 pq~RHKLC~~g~l~~~~v~rqspd~~--~Al--------~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 124 PQRRHKLCHLGLLEAFVVDRQSPDRV--VAL--------YLEPRGQPPLRLPLA 167 (442)
T ss_pred chhhccccccchhhhhhhhhcCCcce--eee--------ecccCCCCceecccC
Confidence 765565532222333322 1222222 222 235678888877664
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.2 Score=38.62 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=68.1
Q ss_pred CceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEee---cC-----CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 424 GANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVE---DG-----LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 424 ~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~---~~-----~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
+.+.|...+.+......+|+... .+..-.|||.|.+.+. +. ....+.|.|+.....++ ..+|.+.|+|++
T Consensus 24 ~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 24 GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHH
Confidence 45555443333221123443333 3456789999999874 11 33468899988754444 489999999999
Q ss_pred cccc--ceeeeEEEcCCC--CccEEEEEEEEEeCCCC
Q 009664 494 VILE--GEYTDCFELDGT--KSGKLKLHLKWMPQPIY 526 (529)
Q Consensus 494 l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~~~~~~ 526 (529)
.... .....-++|.+. .+..+++.+...++...
T Consensus 104 y~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 104 YANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred hhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 9885 456788999865 45788888888876543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.94 Score=35.45 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceee
Q 009664 282 KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361 (529)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 361 (529)
-++-.+.+.+. +....+|.-.. -.+..|++.|.+.+.. +..|+|.||=.|- ..+-|-..+.|.+... .
T Consensus 8 ~~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~ 75 (98)
T cd08687 8 CSEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----E 75 (98)
T ss_pred ccceEEEEEEc--CeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----c
Confidence 36778888886 34566676543 3578999999999865 4689999987663 3466777788877322 1
Q ss_pred EEEEcccccccccCCccccEEEEEEEE
Q 009664 362 VWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 362 ~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
.-.+ -.+.|.+..+++|
T Consensus 76 ~~~~----------lepqg~l~~ev~f 92 (98)
T cd08687 76 VQLD----------MEPQLCLVAELTF 92 (98)
T ss_pred ceec----------cccccEEEEEEEe
Confidence 2222 3567888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.58 Score=41.37 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=58.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEECC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYDDE 336 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~l~i~v~d~~ 336 (529)
.++|++....++...+ ....+-|+.+.+--++. ....|.......++.|||...|.+. + +....|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888877776411 23456677665542221 2234444444478999999888753 3 23558999999976
Q ss_pred CCC--CCceeEEEEEECcc
Q 009664 337 GIQ--SSELIGCAQVRLCE 353 (529)
Q Consensus 337 ~~~--~d~~lG~~~i~l~~ 353 (529)
..+ .+..||.+.++|-+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 543 46799999999865
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.3 Score=43.23 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=44.3
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
..|+.+.-+..+.|||-.+|+|. + +.++.|.|+|||....++ ..+|.+.++|-+-
T Consensus 49 v~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 49 VQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 46666666778899999999884 3 478899999999876544 6899999999884
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.63 Score=46.42 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=69.4
Q ss_pred EEEccCCeeEeeecccCCCCCccCceEEEEee-------cCCCCEEEEEEEECCC-CC-CCeeEEEEEecccc---ccc-
Q 009664 431 IELEKDASQKRREVVNDCLNPIWNQTFDFVVE-------DGLHDMLIAEVWDHDT-FG-KDYMGRCILTLTRV---ILE- 497 (529)
Q Consensus 431 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-------~~~~~~L~i~V~D~~~-~~-~d~lG~~~i~L~~l---~~~- 497 (529)
+..........|..+..+..|.||....+.+. ......|.++|+--+. .+ ++.+|.+.++|..+ ...
T Consensus 22 v~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~ 101 (340)
T PF12416_consen 22 VEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKN 101 (340)
T ss_pred EEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccc
Confidence 44555666788999999999999999999885 2356789999998873 23 38999999999998 433
Q ss_pred -ceeeeEEEcCCC------CccEEEEEEEEEe
Q 009664 498 -GEYTDCFELDGT------KSGKLKLHLKWMP 522 (529)
Q Consensus 498 -~~~~~w~~L~~~------~~G~i~l~~~~~~ 522 (529)
.....||+|-+. .+-++.+.+.-..
T Consensus 102 ~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 102 QKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred cccCCCeeEccccccccccCCccEEEEEEEec
Confidence 334899999876 3567777665543
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.68 Score=41.02 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEECCCCCCCceeEEEEEECcc
Q 009664 281 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSSELIGCAQVRLCE 353 (529)
Q Consensus 281 g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~~-~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~ 353 (529)
..+|-|+.+.+-.++. ....|+.+.-+..+.|||...|.+. +. ....|.|.+||.+..++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4567787776642221 1235555555667899998888763 32 356899999998765567799999999865
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.74 Score=41.39 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccC----CCCCCeeccEEEEEEe--c-CCCCEEEEE
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTIN----NDLNPIWNEHFEFIVE--D-ESTQHLVVR 331 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~----~t~nP~Wne~f~~~v~--~-~~~~~l~i~ 331 (529)
..+.|+|.++.+++........|-|+.+.+--++. ....|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 46789999999998765444577888886642211 122343211 1235779998888763 2 235589999
Q ss_pred EEECCCCC---------CCceeEEEEEECcc
Q 009664 332 IYDDEGIQ---------SSELIGCAQVRLCE 353 (529)
Q Consensus 332 v~d~~~~~---------~d~~lG~~~i~l~~ 353 (529)
+|+....+ .+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99976543 35688999888865
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.63 Score=41.11 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCCC--C-CeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFG--K-DYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~--~-d~lG~~~i~L~~l 494 (529)
..|.......++.|||..+|++. + |.++.|.|.||+.+..+ + ..||.+.++|-+.
T Consensus 47 ~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 47 QSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 34444444478999999999863 3 47889999999977654 2 5899999999884
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=89.55 E-value=3.9 Score=37.17 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=40.6
Q ss_pred eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCC-C-CceeEEEEEECc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ-S-SELIGCAQVRLC 352 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~-~-d~~lG~~~i~l~ 352 (529)
.++|-+...+.+|.|+|++.+.+... ....|.|++++..... + ...+|.+-+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 57888899999999999999887543 4557889888754321 1 256888888873
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.9 Score=37.69 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC---eEeccccCCCCCCeeccEEEEEEe--cC-CCCEEEEEEEECC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE 336 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~~-~~~~l~i~v~d~~ 336 (529)
.++|+|.++..+. .+......-|+.+.+-- +++ ..+|....-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 5678888876432 22222233455554431 122 224555555678999998877753 32 3568999999964
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=88.09 E-value=5.9 Score=36.12 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=40.9
Q ss_pred eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC-CC---CceeEEEEEECc
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-QS---SELIGCAQVRLC 352 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~-~~---d~~lG~~~i~l~ 352 (529)
.++|-+...+.+|.|+|++.+.+... ....|.|.+++.... .+ ...+|.+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 57888888999999999998887543 456899999885432 12 246888888874
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.4 Score=38.88 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=39.4
Q ss_pred eeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCC-C---C-CeeEEEEEecccc
Q 009664 441 RREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTF-G---K-DYMGRCILTLTRV 494 (529)
Q Consensus 441 kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~-~---~-d~lG~~~i~L~~l 494 (529)
.|+.+.. .++.|||-.+|+|. + +.++.|.|+||+.... + + ..+|.+.++|-+-
T Consensus 46 ~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 46 NTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 4544443 68999999999874 3 4788999999996542 1 2 3699999999874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.8 Score=38.12 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=34.6
Q ss_pred CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCC-C--CceeEEEEEECcc
Q 009664 297 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ-S--SELIGCAQVRLCE 353 (529)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~-~--d~~lG~~~i~l~~ 353 (529)
..+.|.+..++.+|.|+|+|.+.+... ....|.|.+++...-. + +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356788888999999999999988654 3458999999965422 1 2689999999865
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.7 Score=39.22 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=40.2
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCC---------------C--CCeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTF---------------G--KDYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~---------------~--~d~lG~~~i~L~~l 494 (529)
.+|+.+.-+.++.|||-++|.|. | +..+.|.|.||+.... + +..||.+.+.|-+-
T Consensus 48 ~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 48 RRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred ceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 35666666778999999999874 3 4788999999985221 1 13688899888774
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=85.73 E-value=2.8 Score=38.09 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=35.3
Q ss_pred eeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCC-C---CeeEEEEEeccc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG-K---DYMGRCILTLTR 493 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~-~---d~lG~~~i~L~~ 493 (529)
..+.|.+..++.+|.|+|+|.+.++.. .+..|.+++++..... + ..+|.+.++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888999999999999999988744 4668999999865432 1 489999999988
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=85.27 E-value=2.3 Score=38.27 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=41.0
Q ss_pred EeeecccCCCCCccCceEEEEee--c-CCCCEEEEEEEECCCCC----------------C-CeeEEEEEecccc
Q 009664 440 KRREVVNDCLNPIWNQTFDFVVE--D-GLHDMLIAEVWDHDTFG----------------K-DYMGRCILTLTRV 494 (529)
Q Consensus 440 ~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~i~V~D~~~~~----------------~-d~lG~~~i~L~~l 494 (529)
..|+.+.-+.++.|||.++|.+. + |.++.|.|.||+....+ + ..||.+.++|-+.
T Consensus 46 ~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 46 VKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred eEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 45655555678999999999774 3 47889999999865321 1 4799999998874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.43 E-value=2.7 Score=46.50 Aligned_cols=106 Identities=12% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCcEEEEEEecCCCCeEeccccCCC-CCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccCCCceee
Q 009664 283 SDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 361 (529)
Q Consensus 283 ~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 361 (529)
.++|+.+.+. .....+|....+. .+|.|.+.|......... .+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 4889988886 2344566666666 799999999877766543 78888888887776789999999999998888888
Q ss_pred EEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 362 VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 362 ~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
.|+++...... .....-.+.+.+.|.+...
T Consensus 215 ~~~~Il~~d~~--~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 215 GWFPILDNDGK--PHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ceeeeeccCCc--cccCCcccceEEeeEeech
Confidence 99988643211 1122234567788877654
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=84.42 E-value=18 Score=32.35 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=51.4
Q ss_pred CCCcEEEEEEecCCCCeEeccccCC--CCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCCceeEEEEEECcccC
Q 009664 282 KSDPYAVLFVRPLPEKTKKSKTINN--DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 355 (529)
Q Consensus 282 ~~dpyv~v~~~~~~~~~~kT~~~~~--t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~ 355 (529)
+..-|+++.++ ++...+|+...- ...-.++|.|.+.+.... ..|.++||.... ..+..|+++.+|+-...
T Consensus 36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecCC-CEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 44568888886 345566665432 333467899999997754 589999999887 57889999999986653
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=83.82 E-value=16 Score=32.59 Aligned_cols=88 Identities=11% Similarity=0.275 Sum_probs=59.0
Q ss_pred cCCeeEeeecccCC--CCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc--ce--eeeEEEcCC
Q 009664 435 KDASQKRREVVNDC--LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE--GE--YTDCFELDG 508 (529)
Q Consensus 435 ~~~~~~kT~v~~~t--~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~--~~--~~~w~~L~~ 508 (529)
+++.+.+|+...=+ ..=.|||.|.+.+.. .-..|.++||.....++..|+++.+++-..... .. ...||.+..
T Consensus 46 N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~~~~~~eFsS 124 (168)
T PF15625_consen 46 NDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNVPLEEYEFSS 124 (168)
T ss_pred CCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCCceEeEEEcC
Confidence 45556666554432 334589999999976 446899999999875568999999997754432 11 233333321
Q ss_pred ------------------------CCccEEEEEEEEEeC
Q 009664 509 ------------------------TKSGKLKLHLKWMPQ 523 (529)
Q Consensus 509 ------------------------~~~G~i~l~~~~~~~ 523 (529)
.-+|.+.+++.|...
T Consensus 125 ~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~ 163 (168)
T PF15625_consen 125 DQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVG 163 (168)
T ss_pred CceeeccceeccccccCCCCcccceeeeEEEEecEEeCC
Confidence 137999999999754
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=83.75 E-value=7.9 Score=33.47 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=39.1
Q ss_pred eccccCCC-CCCeeccEEEEEEe--c-CCCCEEEEEEEECCCCCCC----ceeEEEEEECccc
Q 009664 300 KSKTINND-LNPIWNEHFEFIVE--D-ESTQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL 354 (529)
Q Consensus 300 kT~~~~~t-~nP~Wne~f~~~v~--~-~~~~~l~i~v~d~~~~~~d----~~lG~~~i~l~~l 354 (529)
.|+...-+ .++.|||...|.+. + +....|.|.||+.+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56555555 79999999888864 3 3456899999997765444 6899999998653
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=80.94 E-value=4.4 Score=36.77 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=41.8
Q ss_pred eeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCC--CC-CeeEEEEEeccc
Q 009664 438 SQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF--GK-DYMGRCILTLTR 493 (529)
Q Consensus 438 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~--~~-d~lG~~~i~L~~ 493 (529)
..++|.|..++.+|.|||++.+.++.. ....|.++++..... .+ ..+|-.-++|-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 357899999999999999999988633 566788876654322 12 569988899854
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 529 | ||||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 5e-09 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 8e-09 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 1e-08 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 2e-08 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 7e-08 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-07 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 7e-07 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 8e-07 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 8e-07 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 1e-06 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 1e-06 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 2e-06 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 2e-06 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 2e-06 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 2e-06 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 2e-06 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 3e-06 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 3e-06 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 3e-06 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 4e-06 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 4e-06 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 7e-06 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 2e-05 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 4e-05 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 5e-05 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 8e-04 |
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-40
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
P GTLEV LV AKGL + D + DPY L R + K + P WNE F F
Sbjct: 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--TQDQKSNVAEGMGTTPEWNETFIF 64
Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTK 377
V + +T+ L +I+D + + +G A + L + G + +VK D +
Sbjct: 65 TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEE 117
Query: 378 YRGQVHLELLYCPFGMEN 395
Y+G++ + L + P G +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-17
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496
QK P WN+TF F V +G L A+++D D + D +G + L V +
Sbjct: 43 DQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPLEPVFV 101
Query: 497 EGEYTDCFEL---DGTKSGKLKLHLKWMP 522
EG D G++ + L + P
Sbjct: 102 EGSIPPTAYNVVKDEEYKGEIWVALSFKP 130
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 4e-40
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 255 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPI 311
EL + VK++ GL KD++G SDPY + + + ++KTI LNP
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60
Query: 312 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
WNE F V + ++ ++D+ + + +G V L L + KD
Sbjct: 61 WNEEILFRVLPQ-RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119
Query: 372 VQRDT---KYRGQVHLELLYCPF 391
+ + + +G + L++ Y P
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLPK 142
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 9e-12
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 491
+ + + LNP WN+ F V ++ EV+D + + D++G+ + L
Sbjct: 41 MSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDENRLTRDDFLGQVDVPL 99
Query: 492 TRVILEGEYTDCFEL-----------DGTKSGKLKLHLKWMPQ 523
+ E + G L+L + ++P+
Sbjct: 100 YPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-37
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 244 KIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKK 300
V L D + + V+++ GL KD++G SDPY + + + +
Sbjct: 7 VEVFGLLEDE-----ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61
Query: 301 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 360
+KTI LNP WNE F V + L+ ++D+ + + +G V L L +
Sbjct: 62 TKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
Query: 361 DVWLKLVKDLDVQ---RDTKYRGQVHLELLYCP 390
KD + ++ +G + L++ Y P
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 3e-13
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 491
+ + + LNP WN+ F V L+ EV+D + + D++G+ + L
Sbjct: 53 MNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFDENRLTRDDFLGQVDVPL 111
Query: 492 TRVILEGEYTDCFEL-----------DGTKSGKLKLHLKWMP 522
+ E + G L+L + ++P
Sbjct: 112 YPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-36
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
G L V + A + K GK DP + + + KK+K ++N+LNP+WNE EF +
Sbjct: 7 GMLRVIVESASNI-PKTKFGKPDPIVSVIFKD---EKKKTKKVDNELNPVWNEILEFDLR 62
Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378
+ + L + + D E I ++LIG A V L +L + + + KL+ L+ ++
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDT 121
Query: 379 RGQVHLELLYCP 390
+ L + Y P
Sbjct: 122 GATIDLVIGYDP 133
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 438 SQKRR-EVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLT 492
+K++ + V++ LNP+WN+ +F + L V D +T G+ +G + L
Sbjct: 37 DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALK 96
Query: 493 RVILEGEYTDCFEL-------DGTKSGKLKLHLKWMP 522
+ + + ++L + L + + P
Sbjct: 97 DLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-36
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
S ++K VG L+VK+++A L D GKSDP+ +L + ++ T+ +LNP WN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWN 61
Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
+ F F ++D L V ++D++G + + +G + L + G+ LK
Sbjct: 62 KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL---- 116
Query: 374 RDTKYRGQVHLELLYC 389
+ ++G ++LE+
Sbjct: 117 -EQAFKGVIYLEMDLI 131
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-16
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 439 QKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496
+ + V LNP WN+ F F ++D +HD+L V+D D D++G+ + L +
Sbjct: 45 DRLQTHTVYKNLNPEWNKVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD 103
Query: 497 EGEYT---DCFELDGTKSGKLKLHLKWM 521
+L+ G + L + +
Sbjct: 104 GQPNCYVLKNKDLEQAFKGVIYLEMDLI 131
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 7e-36
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 264 LEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
V +++A +T D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 321 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
+ L + + D + E +G A + ++ G+ K+V +
Sbjct: 65 DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF--------NQVTEM 115
Query: 381 QVHLELLYC 389
+ + L
Sbjct: 116 VLEMSLEVA 124
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 4e-18
Identities = 16/91 (17%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCIL 489
+ + ++R N+ +NP+WN+TF+F+++ ++L + D + + +G
Sbjct: 33 LFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATF 92
Query: 490 TLTRVILEGEYTDCFELDGTKSGKLKLHLKW 520
T++ + + + F + L++ L+
Sbjct: 93 TVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 131 bits (329), Expect = 2e-32
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Query: 248 ILPGDYSELELKPVGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTI 304
I P + +E + V +++A +T D++ DPY LF+ P+ K+++
Sbjct: 4 IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63
Query: 305 NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWL 364
NND+NP+WNE FEFI++ L + + D + E +G A + ++ G+ K+V
Sbjct: 64 NNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122
Query: 365 KL--VKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 406
V ++ ++ + L E F +
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIR 166
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 64.6 bits (156), Expect = 5e-11
Identities = 20/91 (21%), Positives = 44/91 (48%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 497
S+KR N+ +NP+WN+TF+F+++ ++L + D + + +G T++ + +
Sbjct: 56 SRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVG 115
Query: 498 GEYTDCFELDGTKSGKLKLHLKWMPQPIYRD 528
+ F + L++ L+ P R
Sbjct: 116 EKKEVPFIFNQVTEMVLEMSLEVCSCPDLRF 146
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 3e-32
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 49/250 (19%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 322 DE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
+ + LV+ +YD + ++IG +V + ++ G V + W L +++
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE--KL 136
Query: 380 GQVHLELLYCPFGME----------------NVFTNPFAPNFSMTSLEKV-LTNGEKALK 422
G + L Y P + ++P+ K+ L K LK
Sbjct: 137 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYV---------KIHLMQNGKRLK 187
Query: 423 SGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFG 480
K+ + + LNP +N++F F V E ++ V D+D G
Sbjct: 188 K----------------KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231
Query: 481 K-DYMGRCIL 489
K D +G+ +
Sbjct: 232 KNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY + + ++ KK KT N LNP +NE F F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 373
V E +VV + D + I ++ IG +V + G W ++ +
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG--KVFVGYNSTGAELRHWSDMLANPRRP 263
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGR 486
+ L D +K +V LNP++N+ F F V + L+ V+D D F K D +G
Sbjct: 46 VFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGE 105
Query: 487 CILTLTRVILEGEYTDCFELDGTKS------GKLKLHLKWMPQ 523
+ + V + +L + G + L+++P
Sbjct: 106 FKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT 148
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-31
Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQV--RLCELEPGKVKDVWLKLVKDLDVQRDTK 377
+ + + L +YD + +LIG + L E + +W +++ +
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG---GSEKA 136
Query: 378 YRGQVHLELLYCPFGME----------------NVFTNPFAPNFSMTSLEKV-LTNGEKA 420
G+++ L Y P F++P+ K L + +
Sbjct: 137 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYV---------KASLISEGRR 187
Query: 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDF-VVEDGLHDM-LIAEVWDHDT 478
LK ++ + + LNP +N+ F V + + ++ L V D+D
Sbjct: 188 LKK----------------RKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 231
Query: 479 FGK-DYMGRCIL 489
G + +G C +
Sbjct: 232 IGHNEVIGVCRV 243
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGR 486
I L D +K + +V LNPI+N+TF F V + L V+D D F + D +G+
Sbjct: 47 IYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQ 106
Query: 487 CILTLTRVILEGEYTDCFELD-------GTKSGKLKLHLKWMPQ 523
+L + E D G+L L ++P
Sbjct: 107 VVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPT 150
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-28
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 9/136 (6%)
Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
S L L++ ++ AK NK PY + V ++KK++ NN +P W
Sbjct: 28 SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWK 84
Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDL 370
+ IV S L R++ + ++S L+G A + + E K+++V + L
Sbjct: 85 QPLTVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142
Query: 371 DVQRDTKYRGQVHLEL 386
D + T+ G + + L
Sbjct: 143 D-KEPTETIGDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-13
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 438 SQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVI 495
Q ++ E N+ +P W Q +V L VW H T D +G L + +
Sbjct: 67 GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETL 124
Query: 496 LEG-----EYTDCFELDGTKS-----GKLKLHLKWMPQP 524
E +L G K G L + L +
Sbjct: 125 KSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE 163
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 3e-27
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 254 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 313
+ K + + +V A+GL KD G SDPY + V + K++KTI +LNP+W
Sbjct: 9 LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWE 65
Query: 314 EHFEFIVEDESTQHLVVRIYD-----------DEGIQSSELIGCAQVRLCELEPGKVKDV 362
E+F F + S+ + VR+ D +S + +G + + L DV
Sbjct: 66 ENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDV 122
Query: 363 WLKLVKDLDVQRDTKYRGQVHLEL 386
W L K + G + L +
Sbjct: 123 WYNLDK---RTDKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-11
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 432 ELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---------- 481
++ ++KR + + LNP+W + F F + D + V D D K
Sbjct: 43 TVQVGKTKKRTKTIYGNLNPVWEENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRE 101
Query: 482 --DYMGRCILTLTRVILEGEYTDCFELD-----GTKSGKLKLHLK 519
D++G+ I+ + L GE + LD SG ++LH+
Sbjct: 102 SDDFLGQTIIEVRT--LSGEMDVWYNLDKRTDKSAVSGAIRLHIS 144
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-27
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
+ + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 324 STQHLVVRIYDDEGI---QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 380
+ + +++ + I Q + +GC ++ + K + L+ RG
Sbjct: 66 --DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123
Query: 381 QVHLELLY 388
Q+ + L
Sbjct: 124 QIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 6e-14
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 431 IELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD----YMGR 486
I ++ + V + L+P WNQ +D V D + VW+H K ++G
Sbjct: 32 IVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK--TDSITISVWNHKKIHKKQGAGFLGC 89
Query: 487 CILTLTRVILEGEYTDCFELDGTK---------SGKLKLHLKW 520
L I + T LD K G++ + L+
Sbjct: 90 VRLLS-NAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-24
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
L+ +++AKGL D G +DPY L + P K+ K +KT+ N NP+WNE ++
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
ED + L + + D++ +E IG + L +L+ + K+ + L +
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-09
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCI 488
S K R + + + NP+WN+T + ED L V D D FG +++G
Sbjct: 61 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120
Query: 489 LTLTRVILEGEYTDCFEL 506
+L ++ L
Sbjct: 121 FSLKKLKANQRKNFNICL 138
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 2e-23
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 28/154 (18%)
Query: 247 PILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGK----------SDPYAVLFVRPLPE 296
+ G S +K G L V++ +A GL + DPY + V
Sbjct: 14 LVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ--V 71
Query: 297 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-- 354
+ ++ T P +NE F V D HL + ++ + + + ++ EL
Sbjct: 72 RVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLR 129
Query: 355 --EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 386
+ W+ L G+V + +
Sbjct: 130 TTGASDTFEGWVDLEP----------EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 6e-13
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTR 493
+ P +N+ F V DG H L V+ G D ++ C L
Sbjct: 69 DQVRVGQTSTKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQE 126
Query: 494 VILEGEYTDCFE--LDGTKSGKLKLHLKW 520
++ +D FE +D GK+ + +
Sbjct: 127 LLRTTGASDTFEGWVDLEPEGKVFVVITL 155
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-23
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
TL VK+++A+ L KD G SDP+ +++ P + ++K +LNP WNE F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
E + L +++ D + ++ IG + L +++ +++ W L
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDF---VVEDGLHDMLIAEVWDHDTFGK-DYMG 485
I L D K +V LNP WN+TF F E + +L +V D+D F + D +G
Sbjct: 53 IYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIG 112
Query: 486 RCILTLTRVILEGEYTDCFEL--DGTKSG 512
+ L +V L T +L G SG
Sbjct: 113 EVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-23
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ + LV+ +YD + ++IG +V + ++ G V + W L
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGR 486
+ L D +K +V LNP++N+ F F V + L+ V+D D F K D +G
Sbjct: 61 VFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 120
Query: 487 CILTLTRVILEGEYTDCFEL 506
+ + V + +L
Sbjct: 121 FKVPMNTVDFGHVTEEWRDL 140
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-22
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101
Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ + LV+ +YD + ++IG +V + ++ G V + W L
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGR 486
+ L D +K +V LNP++N+ F F V + L+ V+D D F K D +G
Sbjct: 69 VFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 128
Query: 487 CILTLTRVILEGEYTDCFELDGTK 510
+ + V + +L +
Sbjct: 129 FKVPMNTVDFGHVTEEWRDLQSAE 152
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
L V + AK L D G SDPY L + P P+ +K+KTI LNP WNE F F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 320 V-EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369
+ E + + L V I+D + ++ +G + EL+ V W KL+
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG-WFKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 6e-15
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILT 490
+ + K++ + + LNP WN+TF F +++ D L E+WD D + D+MG
Sbjct: 63 DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFG 122
Query: 491 LTRVILEGEYTDCFELDGTKSGK 513
++ + G F+L + G+
Sbjct: 123 ISELQKAGV-DGWFKLLSQEEGE 144
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 3e-21
Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 27/141 (19%)
Query: 259 KPVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINND 307
G L++K+ +A L + DPY L V + ++ T
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKT 60
Query: 308 LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLK 365
+P W++ F V + + + + ++ D I + + ++ EL + + W+
Sbjct: 61 NSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 366 LVKDLDVQRDTKYRGQVHLEL 386
L G+V++ +
Sbjct: 119 LEP----------EGKVYVII 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 7e-13
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 436 DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRV 494
D+ + +P W+ F V +G + V+ G D ++ C + +
Sbjct: 48 DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEEL 105
Query: 495 ILEGEYTDCFELDGTKSGKLKLHLK 519
+ G +D GK+ + +
Sbjct: 106 LQNGSRHFEDWIDLEPEGKVYVIID 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
L V ++A + G D Y V + ++ L+ W E +
Sbjct: 26 AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
E+ T L + + + + G ++ L W +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-10
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 7/89 (7%)
Query: 431 IELEKDASQKRRE--VVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMG 485
+ + + L+ W + + E+ L + D F + G
Sbjct: 50 GSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAG 109
Query: 486 RCILTLTRVILEGEYTDCFELD--GTKSG 512
L L + EL G SG
Sbjct: 110 ELRLGLDGTSVPLGAAQWGELKTSGPSSG 138
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-19
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
G LEV++++A+ LT K PY +++ K KT L+P++ + F
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 319 IVEDESTQHLVVRIYDDEG-IQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ + L V ++ D G + +G AQ+ L EL+ + W KL
Sbjct: 90 DESPQG-KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDTFGK-DYMGRCILT 490
K++ + L+P++ Q+ F +L VW D+ +MG +
Sbjct: 63 NGACIAKKKTRIARKTLDPLYQQSLVFDESPQ-GKVLQVIVWGDYGRMDHKCFMGVAQIL 121
Query: 491 LTRVILEGEYTDCFEL 506
L + L ++L
Sbjct: 122 LEELDLSSMVIGWYKL 137
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 262 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 318
+L V + + L D +S+PY ++ P + K KT + +NP+++E +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 319 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
+ + + L ++ + +G A++++ + K D L L + + +
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142
Query: 377 KY 378
+
Sbjct: 143 HH 144
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCILT 490
+ +++ + D +NP++++T + + L L VW H FG+ ++G +
Sbjct: 57 KSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQ 116
Query: 491 LTRVILEGEYTDCFELDGTKSGKLKLHLKW 520
+ L+ + C L G S + + H
Sbjct: 117 MDSWKLDKKLDHCLPLHGKISAESEGHHHH 146
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-19
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT---KKSKTINNDLNPIWNEHFEF 318
+ ++Q L+ + V P E T +++ ++ ++NE F
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 319 IVEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV 367
+ + L V + + E +G AQ+ L E+ G+ W L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 435 KDASQKRR-EVVNDCLNPIWNQTFDFVV-EDGLHD-MLIAEVWDHDTFGK-DYMGRCILT 490
+ + R ++ ++N+ F + LH L +V D + +G ++
Sbjct: 77 ESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQIS 136
Query: 491 LTRVILEGE 499
L V GE
Sbjct: 137 LAEVCRSGE 145
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 6e-19
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
GTL + ++ K L +D +PY ++ P KT +K+K NP +NE +
Sbjct: 20 GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 320 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
E + L + + E ++ + +G + L + K W +L
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDF--VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCIL 489
S+++ ++ NP +N+ + ++ L L V ++ + ++G L
Sbjct: 52 THKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITL 111
Query: 490 TLTRVILEGEYTDCFELDGTKS 511
L L E ++L
Sbjct: 112 PLKDFNLSKETVKWYQLTAATY 133
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 9e-19
Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 262 GTLEVKLVQAKGL-------TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 314
L V++++A+ L ++ + S+PY + + P + +K++ P++ E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 315 HFEFIV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ F + + + L++ + D + +IG V LCE++ K W L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 436 DASQKRR-EVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 491
D ++ V P++ + + F + + L+ V D D F + +G+ + L
Sbjct: 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
Query: 492 TRVILEGEYTDCFEL--DGTKSG 512
V L L G SG
Sbjct: 125 CEVDLVKGGHWWKALIPSGPSSG 147
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 9e-19
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
V + +A+GL D SDPY + + P + K++ + L+P ++E F F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
L I + ++IG + L +E + K + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-09
Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDF--VVEDGLHDM-LIAEVWDHDTFGK-DYMG 485
+ + + K + V+ L+P +++TF F + + ++ L + D F + D +G
Sbjct: 50 MTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIG 109
Query: 486 RCILTLTRVILEGE 499
++ L+ + L
Sbjct: 110 EVLIPLSGIELSEG 123
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 9e-19
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLNP 310
G L + ++QA+ L +D G SDP+ +++ P E +++K + LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
WN+ + E + L V ++D + S++ +G + L W L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCI 488
A KRR + V LNP WNQT + E + L VWD+D F D++G +
Sbjct: 59 NASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118
Query: 489 LTLTRVILEGEYTDCFEL 506
+ L+ + L
Sbjct: 119 IDLSSTSHLDNTPRWYPL 136
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 9e-18
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
++ V +++A+ L D+ G SDPY +++ ++ +K KT +LNPI+NE F F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ E + +++ + D + + +++IG +
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCIL 489
+K +K+ LNPI+N++F F + + L + +I V D D + D +G+ L
Sbjct: 49 DKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-17
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
L V + + L SDPY +++ P ++ + KT LNP++++ F+F
Sbjct: 24 NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 320 V--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGKVKDVWLKLVKD 369
V + + L V + + G S + L+G V L E K W L +D
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-09
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGKD---YMGRCI 488
++ + +++ V LNP+++Q+FDF V + L V + F +G+ +
Sbjct: 56 KRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVL 115
Query: 489 LTLTRVILEGEYTDCFEL 506
+ L L +T ++L
Sbjct: 116 VALASEELAKGWTQWYDL 133
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-17
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
L V ++ AK L +++ +PY ++ P +++KT+ L P WN+ F +
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ + L + ++D + + SE +G + L W KL
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 128
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDF--VVEDGLHD-MLIAEVWDHDTFGK---DYMGR 486
++ KRR + V L P WNQTF + V + ML +WD + +++G
Sbjct: 50 DRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 109
Query: 487 CILTLTRVILEGE 499
++ L +L+ E
Sbjct: 110 ILIELETALLDDE 122
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-17
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
L V ++ AK L +++ +PY ++ P +++KT+ L P WN+ F +
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 320 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ + L + ++D + + SE +G + L W KL
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 131
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 434 EKDASQKRR-EVVNDCLNPIWNQTFDF--VVEDGLHD-MLIAEVWDHDTFGK---DYMGR 486
++ KRR + V L P WNQTF + V + ML +WD + +++G
Sbjct: 53 DRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 112
Query: 487 CILTLTRVILEGEYTDCFELDGTKSGK 513
++ L +L+ E ++L SG
Sbjct: 113 ILIELETALLDDE-PHWYKLQTHDSGP 138
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-17
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF- 318
L + +++ KGL +K G DPY + + P + + KT + + +P ++EHF F
Sbjct: 27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 319 IVEDESTQHLVVRIYDDEGIQ-SSELIGCAQVRLCELE-PGKVKDVWLKL 366
+ E++ + L+V +++ S LIGC + L P K W L
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDF-VVEDGLHDMLIAEVWDHDTFGK--DYMGRCILT 490
+ ++ + V DC +P +++ F F V E+ L+ VW+ + + +G
Sbjct: 59 DSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFG 118
Query: 491 LTRVILEGEYTDC-FELDGTKSGKLKLHLK 519
+ ++ + + L G G+ HLK
Sbjct: 119 VKSLLTPDKEISGWYYLLGEHLGR-TKHLK 147
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-16
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
G L V +++ L D G SDP+ L+++P K K KT LNP +NE F +
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
+ D + + L + ++D + +S++ IG Q+ + G+ W + +K+ D
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 148
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-08
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCIL 489
++ + ++ LNP +N+ F + ++ L L VWD+D DY+G C L
Sbjct: 71 GKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 5e-16
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY + + ++ KK KT N LNP +NE F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
V E +VV + D + I ++ IG V
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 489
K +K+ + + LNP +N++F F V + + + ++ V D+D GK D +G+ +
Sbjct: 58 GKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 78.8 bits (193), Expect = 1e-15
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 431 IELEKDASQKRREVVNDCLNPIWNQTFDF-VVEDGLHDMLIAEVWDHDTFGK-DYMGRCI 488
+++ + R VV + NP W DF V L +VWD D D +G C
Sbjct: 418 LKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCD 477
Query: 489 LTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQP 524
+ G + EL G++K P
Sbjct: 478 RSPHS----GFHEVTCEL---NHGRVKFSYHAKCLP 506
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 1e-11
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF- 318
+ L V +A+ L +D Y +F + ++ + N+ NP W + +F
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVF---FGGQEFRTGVVWNNNNPRWTDKMDFE 447
Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK-----DLDVQ 373
V + L V+++D + +L+G G +V +L +
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSG-FHEVTCELNHGRVKFSYHAK 503
Query: 374 RDTKYRGQVHLELLYCPFGM 393
G LE Y P G+
Sbjct: 504 CLPHLTGGTCLE--YAPQGL 521
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-15
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
TL V +++A+ L D+ G SDPY + + ++ K KT N ++NE F F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 320 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
+ E + + D E +E+IG ++ L G W ++
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHWKEICD 138
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 489
+K S+K+ V N ++N+ F F + + L ++ + V D + + + +GR +L
Sbjct: 63 KKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-11
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 6/96 (6%)
Query: 439 QKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498
K + P W Q F F + L L EVW+ +G + L +
Sbjct: 34 VKSTTIAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSN 92
Query: 499 E--YTDCFELDG---TKSGKLKLHLKWMPQPIYRDT 529
E + LD ++ I D
Sbjct: 93 EEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDA 128
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-09
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + +AK ++ K + Y L V+ + T + P W + F F +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG----SQPSWEQDFMFEIN 57
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRDTK 377
L V ++ ++G+ ++G + L + E G + WL L + D++
Sbjct: 58 RLDLG-LTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQA-IMADSE 112
Query: 378 YRGQV----HLELLYCPF 391
G H LL F
Sbjct: 113 ICGTKDPTFHRILLDAHF 130
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 2e-11
Identities = 27/144 (18%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 253 YSELELKPVGT---LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLN 309
+ L P G+ L V L L G++D A + R ++ S+ + N +
Sbjct: 9 HHSSGLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCED 60
Query: 310 PI-WNEHFEFIVED--ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
++E F + V + + L ++I++ + S++LIG ++ L ++ V++ +++
Sbjct: 61 VADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV----VEENRVEV 116
Query: 367 VKDLDVQRDTKYRGQVHLELLYCP 390
L + + + +E+ Y
Sbjct: 117 SDTLIDDNNAIIKTSLSMEVRYQA 140
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 5e-05
Identities = 12/92 (13%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 439 QKRREVVNDCLNPI-WNQTFDFVVEDGL--HDMLIAEVWDHDTFGKD-YMGRCILTLTRV 494
V+ +C + +++TF + V + +++L +++++ + +G + L +V
Sbjct: 49 SFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
Query: 495 ILEGEYTDCFEL----DGTKSGKLKLHLKWMP 522
+ E L + L + +++
Sbjct: 109 VEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA 140
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 58.1 bits (139), Expect = 3e-09
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
L++ +++A+ L K Y L L +T + W EHFEF
Sbjct: 12 VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66
Query: 322 DESTQ---HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 363
HL + +G V + L + W
Sbjct: 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 6e-08
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
L V + +AK ++ K + Y L V+ + T + P W + F F +
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRG----SQPSWEQDFMFEIN 66
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRD 375
L V ++ ++G+ ++G + L + E G + WL L +
Sbjct: 67 RLDL-GLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 120
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 4e-06
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 494
K + + + P W Q F F + L L EVW+ +G + L +
Sbjct: 39 KVQNVESTTIAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKGLIWDTMVGTVWIPLRTI 97
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 1e-07
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTI-NNDLNPIWNEHFE 317
L V+++ + L + S + V ++++ I NN NP W+ FE
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557
Query: 318 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
F V + + D + ++ IG + + L+ G
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG 597
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 437 ASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 482
S++ + N+ NP W+ F+F V ++ V D+D+ K+
Sbjct: 536 GSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKN 581
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
+ +G L V +++A L GKS+PY + + ++ ++TI + LNP WN +
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNC 438
Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRD 375
+F ++D L + ++D + + +G ++ + ++ + K + + +V
Sbjct: 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP-- 496
Query: 376 TKYRGQVHLELLYCPF 391
G+V + F
Sbjct: 497 ---TGEVWVRFDLQLF 509
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 3e-05
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 201 EK---KKLDFKLKVVGGDISTIPGLSDSIEATI 230
EK KKL LK+ D + P L +I+AT+
Sbjct: 18 EKQALKKLQASLKLYADD--SAPAL--AIKATM 46
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 9e-05
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 250 PGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----EKTKKSKTI 304
P +++ TL + ++ + L+ + Y + + LP K
Sbjct: 666 PFSVDRIDVVVATTLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPS 721
Query: 305 NNDLNPIWNEH-FEFI-VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
N +NP+W E F F + L V + ++ ++ +G + + L G
Sbjct: 722 TNSINPVWKEEPFVFEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSG 772
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 9e-04
Identities = 53/423 (12%), Positives = 107/423 (25%), Gaps = 129/423 (30%)
Query: 37 TTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 96
T +A K +F W+ + + L+KL ++ + S
Sbjct: 164 TWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 97 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDAN------ 150
+ S++ L P + ++ + V +A
Sbjct: 221 SNI------KLRIHSIQAELRRLLKSKPYENCLLVLLN----V-------QNAKAWNAFN 263
Query: 151 -SSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKL 209
S IL + TR + F L + L
Sbjct: 264 LSCKIL-LTTR-------FKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLL 308
Query: 210 KVVGGDISTIPGLSDS--------IEATIHDAIEDSITWP----------VRKIVPIL-P 250
K + +P + I +I D + W + + +L P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 251 GDYSEL--ELK--------PVGTLEV---------------KLVQAKGLTNKDLIGKSDP 285
+Y ++ L P L + KL + L K K
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ--PKEST 425
Query: 286 YAV-----LFVRPLPEKTKKSKTI-----------NNDLNPIWNE---------HFEFIV 320
++ L + ++I ++DL P + + H + I
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 321 EDESTQHLVVRIY-DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 379
E L ++ D ++ ++R + L ++ L Y+
Sbjct: 486 HPERMT-LFRMVFLDFRFLE-------QKIRHDSTAWNASGSI-LNTLQQLK-----FYK 531
Query: 380 GQV 382
+
Sbjct: 532 PYI 534
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.87 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.86 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.86 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.85 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.85 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.85 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.85 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.84 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.83 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.81 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.81 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.81 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.81 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.8 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.8 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.79 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.77 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.77 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.77 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.76 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.76 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.76 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.76 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.76 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.76 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.75 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.75 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.74 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.74 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.73 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.72 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.71 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.69 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.68 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.67 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.66 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.64 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.62 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.62 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.61 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.61 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.6 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.59 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.59 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.59 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.58 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.58 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.58 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.57 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.56 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.56 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.56 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.56 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.55 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.55 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.55 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.54 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.54 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.54 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.53 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.52 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.51 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.5 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.5 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.5 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.49 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.49 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.48 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.48 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.47 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.46 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.46 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.45 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.45 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.39 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.29 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.26 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.26 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.18 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.16 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.15 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.15 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.09 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.07 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.06 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 98.98 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 98.97 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.94 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 98.93 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 98.88 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.68 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.53 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.48 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.47 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.44 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 92.56 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 90.2 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 81.71 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=274.99 Aligned_cols=241 Identities=24% Similarity=0.371 Sum_probs=193.1
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+....|.|+|+|++|++|+.+|..|.+||||++++.+...+.++|+++++++||.|||+|.|.+... ..+.|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 3457899999999999999999999999999999987666789999999999999999999998643 45799999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--h
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--K 412 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~ 412 (529)
++.+++|++||++.++|.++..+...+.|++|.+... ......|+|++++.|.|.. ..+.+..++ .
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~~~G~i~l~l~~~p~~----------~~l~v~v~~a~~ 161 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--EEQEKLGDICFSLRYVPTA----------GKLTVVILEAKN 161 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--CCCCCCCEEEEEEEEETTT----------TEEEEEEEEEES
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc--ccccccccEEEEEEecCcC----------CceEEEEEEeEC
Confidence 9999999999999999999988888899999975321 1234679999999998643 122222222 2
Q ss_pred hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEE
Q 009664 413 VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCIL 489 (529)
Q Consensus 413 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i 489 (529)
+...+..+.++||+++++...+....++||+++++|.||+|||.|.|.+... ....|.|+|||++.+++ ++||++.+
T Consensus 162 L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i 241 (284)
T 2r83_A 162 LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241 (284)
T ss_dssp CCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEE
T ss_pred CCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEE
Confidence 2233445678899999976533333578999999999999999999999643 24579999999999876 89999999
Q ss_pred eccccc----------c--cceeeeEEEcCCC
Q 009664 490 TLTRVI----------L--EGEYTDCFELDGT 509 (529)
Q Consensus 490 ~L~~l~----------~--~~~~~~w~~L~~~ 509 (529)
+++.+. . +....+||+|.+.
T Consensus 242 ~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 242 GYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp ETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred CCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 998632 1 2345899999874
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-32 Score=268.60 Aligned_cols=240 Identities=23% Similarity=0.337 Sum_probs=186.4
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+....|.|+|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d 94 (296)
T 1dqv_A 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 94 (296)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence 4467899999999999999999999999999999976667789999999999999999999998543 34589999999
Q ss_pred CCCCCCCceeEEEEEE-CcccCC-CceeeEEEEcccccccccCCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh-
Q 009664 335 DEGIQSSELIGCAQVR-LCELEP-GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE- 411 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~- 411 (529)
+|.+++|++||++.++ +.++.. ......|+.|.... ......|+|++++.|.|.. ..+.+..++
T Consensus 95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~vsl~y~~~~----------~~l~v~v~~a 161 (296)
T 1dqv_A 95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG---SEKADLGELNFSLCYLPTA----------GLLTVTIIKA 161 (296)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS---SCCSCCCEEEEEEEEETTT----------TEEEEEEEEE
T ss_pred cCCCCCCceEEEEEeccccccccCCccceeeecccccc---ccccccceEEEEEEecccc----------ceeEEEEEEe
Confidence 9999999999999996 444432 34457899986532 2345679999999998643 222222222
Q ss_pred -hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEE
Q 009664 412 -KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRC 487 (529)
Q Consensus 412 -~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~ 487 (529)
.+...+..+.+++|+++++........++||+++++|.||+|||.|.|.+... ....|.|+|||++.+++ ++||++
T Consensus 162 ~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~ 241 (296)
T 1dqv_A 162 SNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVC 241 (296)
T ss_dssp ESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEEC
T ss_pred ecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEE
Confidence 22233445677899998864322234678999999999999999999998743 35679999999999876 899999
Q ss_pred EEecccccc-------------cceeeeEEEcCCC
Q 009664 488 ILTLTRVIL-------------EGEYTDCFELDGT 509 (529)
Q Consensus 488 ~i~L~~l~~-------------~~~~~~w~~L~~~ 509 (529)
.|+++++.. +....+|++|.+.
T Consensus 242 ~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 242 RVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp CCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred EECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 999997643 2235788888754
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=169.50 Aligned_cols=125 Identities=34% Similarity=0.586 Sum_probs=111.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~ 337 (529)
.+.|.|+|+|++|++|+..+..|.+||||++++. ++.++|++++ ++.||.|||+|.|.+.+ ..+.|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCC
Confidence 5789999999999999999988999999999997 5678999998 89999999999999987 45699999999999
Q ss_pred CCCCceeEEEEEECccc-CCCceeeEEEEcccccccccCCccccEEEEEEEEEEccc
Q 009664 338 IQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 393 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~~ 393 (529)
+++|++||++.++|.++ ..+.....|++|.+ +.+..|+|++++.|.|...
T Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~------~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECCS
T ss_pred CCCCceEEEEEEEHHHhccCCCCCcEEEEeec------CCccCEEEEEEEEEEeCCC
Confidence 99999999999999998 55666789999962 4578899999999998753
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=167.55 Aligned_cols=129 Identities=29% Similarity=0.472 Sum_probs=110.5
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---CCCEEEEEEEEC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD 335 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~l~i~v~d~ 335 (529)
...|.|+|+|++|++|+.++. |.+||||++++. +++++|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 457999999999999999998 999999999997 5689999999999999999999998653 357899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
+.+++|++||++.+++.++..+...+.|+.+.+-.. .......|+|++++.|.|..
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~-~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC-TTCCEEEEEEEEEEEECCCB
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccC-CCCCCCCCEEEEEEEEECCC
Confidence 999999999999999999988888899998322111 12335679999999999754
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=169.54 Aligned_cols=129 Identities=25% Similarity=0.474 Sum_probs=104.3
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD 334 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d 334 (529)
....|.|+|+|++|++|+.+|..|.+||||++++.+... +.++|+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 367899999999999999999889999999999985332 578999999999999999999999764 4689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCcee------eEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVK------DVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
++.+++|++||++.++|.++..+... ..|++|.+.. ...+..|+|++++.|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS---TTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc---CCCCcceEEEEEEEEeC
Confidence 99999999999999999998655432 5899997542 23467899999999975
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=163.30 Aligned_cols=120 Identities=27% Similarity=0.525 Sum_probs=104.8
Q ss_pred ceEEEEEEEEecCCCc---cCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 009664 261 VGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~ 337 (529)
.|.|+|+|++|++|+. .+..|.+||||++++.+.+.+.++|+++++++||.|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 5899999999999998 4667899999999998554578999999999999999999999976667799999999998
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
. +|++||++.++|.++..+...+.|++|.+ ...|+|+++++..
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~--------~~~g~i~~~le~~ 124 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ--------VTEMVLEMSLEVA 124 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT--------TEEEEEEEEEECC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcCC--------CceEEEEEEEEeC
Confidence 7 48999999999999999999999999952 4567777777644
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=164.84 Aligned_cols=124 Identities=28% Similarity=0.538 Sum_probs=109.1
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
+..+.|.|+|+|++|++|+.+|..|.+||||++++. ++.++|+++++++||.|||+|.|.+.+. .+.|.|+|||++
T Consensus 8 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d 83 (133)
T 2ep6_A 8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED 83 (133)
T ss_dssp SCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred ccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence 457899999999999999999999999999999997 5688999999999999999999999865 468999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
..++|++||++.+++.++..+. ..|++|.... .+....|+|++++.|.
T Consensus 84 ~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~---~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 84 GDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD---LEQAFKGVIYLEMDLI 131 (133)
T ss_dssp TTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC---TTSCCSSEEEEEEEEE
T ss_pred CCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC---CCCccceEEEEEEEEE
Confidence 9888999999999999997654 5899997532 1346789999999986
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=168.98 Aligned_cols=117 Identities=22% Similarity=0.336 Sum_probs=101.5
Q ss_pred CcceEEEEEEEEecCCCccCC----------CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDL----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL 328 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l 328 (529)
...|.|+|+|++|++|+++|. .|.+||||+++++ +.+..+|+++++|+||+|||+|.|.+.+. +.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~v~~~--~~L 101 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCANVTDG--GHL 101 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEEcCCC--CEE
Confidence 567999999999999998873 2679999999996 23457999999999999999999999763 589
Q ss_pred EEEEEECCCCCCCceeEEEEEECcccCCC----ceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 329 VVRIYDDEGIQSSELIGCAQVRLCELEPG----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 329 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
.|+|||+|.+++|++||++.+++.++..+ ...+.|++|. +.|+|+++++|.
T Consensus 102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----------SSCEEEEEEEEC
T ss_pred EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----------CCcEEEEEEEEE
Confidence 99999999999999999999999998644 6789999994 269999999873
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=162.90 Aligned_cols=122 Identities=31% Similarity=0.565 Sum_probs=106.6
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
...|.|+|+|++|++|+.+|..|.+||||+++++ ++.++|+++++++||.|||+|.|.+.... +.|.|+|||++..
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~l~~~v~d~d~~ 89 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWEENFHFECHNSS-DRIKVRVLDEDDD 89 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCCSCSSCEEEEEEEEEECSTT-CEEEEEEEECCCS
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC---CEEEECCccCCCCCCCcccEEEEEecCCC-CEEEEEEEECCCC
Confidence 3569999999999999999999999999999996 67899999999999999999999997764 6899999999985
Q ss_pred -----------CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 339 -----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 339 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
++|++||++.++|.++ ....+.|++|.+.. .....+|+|++++.|.
T Consensus 90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 90 IKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRT---DKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSS---TTCCCCCEEEEEEEEE
T ss_pred ccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCC---CCCCCceEEEEEEEEE
Confidence 7899999999999998 34568999997532 2345779999999985
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=167.62 Aligned_cols=129 Identities=25% Similarity=0.482 Sum_probs=102.4
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEEC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 335 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~ 335 (529)
...|.|+|+|++|++|+.++..|++||||++++.+... +.++|+++++++||.|||+|.|.+... .+.|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence 56899999999999999999999999999999985333 568999999999999999999999754 46899999999
Q ss_pred CCCCCCceeEEEEEECcccCCCcee-e-----EEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVK-D-----VWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
+.+++|++||++.++|.++..+... + .|++|.... ...+..|+|++++.|.|.
T Consensus 84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS---TTCCCCSEEEEEEEECC-
T ss_pred CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC---CCCccCEEEEEEEEEEeC
Confidence 9999999999999999999765433 2 799997542 235578999999999986
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=161.17 Aligned_cols=118 Identities=19% Similarity=0.328 Sum_probs=101.6
Q ss_pred cceEEEEEEEEecCCCccCCCCC-----------CCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL 328 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l 328 (529)
..|.|+|+|++|++|+++|..++ +||||++++. +.+..+|+++.+|+||.|||+|.|.+.+. +.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46999999999999998885544 9999999985 23457899999999999999999999775 689
Q ss_pred EEEEEECCCCCCCceeEEEEEECcccCCC--ceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 329 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 329 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
.|+|||+|.+++|++||++.+++.++..+ ...+.|++|. +.|+|+++++|.+.
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC----------CCeEEEEEEEEEec
Confidence 99999999999999999999999998764 3458999873 36999999999863
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=155.05 Aligned_cols=125 Identities=22% Similarity=0.422 Sum_probs=103.2
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 339 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~ 339 (529)
....|+|+|++|++|+.+|..|.+||||++++.+. .+.++|+++++++||.|||+|.|.+.+.. .|.|+|||++.++
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCC
Confidence 35689999999999999999999999999999633 47899999999999999999999997753 5999999999886
Q ss_pred C---CceeEEEEEECccc-CCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 340 S---SELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 340 ~---d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
+ |++||++.+++.++ ........|++|.... .....+.+|+|++++.+
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~-~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLN-PSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSS-TTCCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecC-CCCCCceeEEEEEEEEc
Confidence 6 89999999999988 3334445789987532 12234568999999875
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=158.17 Aligned_cols=112 Identities=30% Similarity=0.475 Sum_probs=101.1
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+....+.|+|+|++|++|+.++..+.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 3467899999999999999999889999999999986666789999999999999999999998643 45789999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++.+++|++||++.++|.++..+...+.|++|++
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 9999999999999999999999888999999964
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=157.47 Aligned_cols=112 Identities=26% Similarity=0.444 Sum_probs=99.8
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec---CCCCEEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYD 334 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~l~i~v~d 334 (529)
....+.|+|+|++|++|+.++..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+.. .....|.|+|||
T Consensus 22 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 101 (141)
T 2d8k_A 22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLD 101 (141)
T ss_dssp CSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEE
T ss_pred eCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEE
Confidence 35679999999999999999989999999999998666678999999999999999999998522 235689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
++.+++|++||++.+++.++..+...+.|++|.+.
T Consensus 102 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 102 YDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp CCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred CCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 99999999999999999999888888999999753
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=158.51 Aligned_cols=112 Identities=30% Similarity=0.475 Sum_probs=100.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+....+.|+|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 3467899999999999999999899999999999986666789999999999999999999988543 35789999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
++.+++|++||++.++|.++..+...+.|++|.+
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999899999999999999988888899999963
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-20 Score=162.44 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=97.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~ 331 (529)
+....+.|+|+|++|++|+++|..|.+||||++++.+... .++||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 3457799999999999999999999999999999985322 378999999999999999999998642 24589999
Q ss_pred EEECCCCCCCceeEEEEEECcccC-CCceeeEEEEcc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKLV 367 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 367 (529)
|||+|.++++++||++.++|.++. .+.....|++|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999999999999999999995 467788999985
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=152.99 Aligned_cols=109 Identities=20% Similarity=0.352 Sum_probs=96.2
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecC--CCCeEeccccCCCCCCeeccEEEEE-EecC--CCCEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY 333 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~l~i~v~ 333 (529)
...|.|+|+|++|++|+. +..|.+||||++++.+. ...+++|+++++++||+|||+|.|. +... ....|.|+||
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL 95 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence 457899999999999997 77889999999999754 2457899999999999999999999 7532 4569999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|++.++++++||++.++|.++..+...+.|++|.+
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 99999999999999999999988888899999964
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-19 Score=157.50 Aligned_cols=126 Identities=25% Similarity=0.318 Sum_probs=104.2
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
...+.|+|+|++|++|+..+..+.+||||+++++ ++.++|+++++++||+|||+|.|.+.. .+.|.|+|||++.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence 4678999999999999944444559999999997 478999999999999999999999853 67999999999999
Q ss_pred CCCceeEEEEEECcccCCC---ce--eeEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 339 QSSELIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~---~~--~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
++|++||++.++|.++..+ .. ...|++|.... ...+..|+|.+.+.|.+..
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~---~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK---EPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS---CTTSEEEEEEEEEESEECC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC---CCCcccEEEEEEEeeeecc
Confidence 9999999999999998532 22 26799997641 2346789999999999764
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=149.64 Aligned_cols=110 Identities=23% Similarity=0.394 Sum_probs=90.5
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEe---cCCCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---DESTQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~---~~~~~~l~i~ 331 (529)
+....|.|+|+|++|++|+.++..|.+||||++++.+.+ ...++|+++++++||.|||+|.|.+. +.....|.|+
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 345679999999999999999999999999999997543 46799999999999999999999852 2235689999
Q ss_pred EEECCCCCC--CceeEEEEEECcccCCCceeeEEEEcc
Q 009664 332 IYDDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 332 v~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|||++..++ +++||++.++|.++.... .+.|++|+
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999999886 999999999999986654 78999983
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=148.55 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=96.2
Q ss_pred ccCcceEEEEEEEEecCCCccCCC-CCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEE-EecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~l~i~v 332 (529)
+....+.|+|+|++|++|+.+|.. |.+||||++++.+.+.+.++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 345789999999999999999985 899999999998655678999999999999999999996 5432 346899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCcee-eEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~L~~ 368 (529)
||++.+++|++||++.++|.++..+... ..|++|.+
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 9999999999999999999999776544 56788864
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-19 Score=154.53 Aligned_cols=113 Identities=17% Similarity=0.325 Sum_probs=98.8
Q ss_pred ccCcceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~ 331 (529)
+....|.|+|+|++|++|+.++ ..|.+||||++++.+... .+++|+++++++||.|||+|.|.+... ....|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 3467899999999999999888 578999999999986543 378999999999999999999998654 24579999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
|||++.+++|++||++.++|.++..+...+.|++|.+.
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 99999999999999999999999777778899999764
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=149.28 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=94.2
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecC-CCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
+....+.|+|+|++|+ ++|..|.+||||++++.+. +...++|+++++++||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 3456799999999999 3677899999999999753 23468999999999999999999998643 3468999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|+|.+++|++||++.++|.++..+...+.|++|.+
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999977777889999975
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=151.68 Aligned_cols=111 Identities=23% Similarity=0.410 Sum_probs=95.4
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEE-e--cCCCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v-~--~~~~~~l~i~v 332 (529)
....+.|+|+|++|++|+.++..|.+||||++++.+.. .+.++|+++++++||+|||+|.|.+ . +.....|.|+|
T Consensus 17 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 96 (141)
T 1v27_A 17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 96 (141)
T ss_dssp ETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEE
T ss_pred eCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEE
Confidence 35679999999999999999999999999999996432 4678999999999999999999984 3 22356999999
Q ss_pred EECCCCCC--CceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 333 YDDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 333 ~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
||++.+++ +++||++.++|.++.... .+.|++|.+.
T Consensus 97 ~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 97 WDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp EEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred EECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 99999886 999999999999986654 7899999753
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=152.08 Aligned_cols=111 Identities=26% Similarity=0.395 Sum_probs=95.9
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
....+.|+|+|++|++|+.++..| +||||++++.+.+. ..++|+++++++||+|||+|.|.+... ....|.|+||
T Consensus 20 ~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 98 (142)
T 2dmg_A 20 SSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK 98 (142)
T ss_dssp ETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred eCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence 456799999999999999999889 99999999986444 678999999999999999999998532 2358999999
Q ss_pred ECCCCCC--CceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 334 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 334 d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
|++.++. +++||++.++|.++..+...+.|++|.+.
T Consensus 99 d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 99 NSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp ECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred ECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 9998763 57999999999999877788899999753
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=153.28 Aligned_cols=112 Identities=21% Similarity=0.367 Sum_probs=96.6
Q ss_pred ccCcceEEEEEEEEecCCCcc-CC------CCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNK-DL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQH 327 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~ 327 (529)
+....|.|+|+|++|++|+.+ +. .|.+||||++++.+...+.++|+++++++||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 346789999999999999984 43 35899999999987656789999999999999999999997542 2358
Q ss_pred EEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 328 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 328 l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|.|+|||++.++++++||++.++|.++..+.....|+.|.+
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 99999999999999999999999999987777788999965
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=149.71 Aligned_cols=111 Identities=27% Similarity=0.502 Sum_probs=97.5
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEE-EecC--CCCEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRI 332 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~l~i~v 332 (529)
....|.|+|+|++|++|+.++..|.+||||++++.+.. ...++|+++++++||.|||+|.|. +... ....|.|+|
T Consensus 25 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 104 (142)
T 2chd_A 25 DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISV 104 (142)
T ss_dssp EGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEE
T ss_pred eCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEE
Confidence 35789999999999999999989999999999998533 267899999999999999999998 5432 235899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
||++.+++|++||++.++|.++..+.....|++|.+
T Consensus 105 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 105 CDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 999999999999999999999998888899999864
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=149.23 Aligned_cols=108 Identities=35% Similarity=0.553 Sum_probs=95.1
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~ 336 (529)
..|.|+|+|++|++|+.++..+.+||||++++.+.. ...++|+++++++||.|||+|.|.+... ....|.|+|||++
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 108 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence 358899999999999999989999999999998533 3578999999999999999999998653 2358999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
.+++|++||++.++|.++..+. .+.|++|.+
T Consensus 109 ~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~ 139 (149)
T 1a25_A 109 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS 139 (149)
T ss_dssp SSSCCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCCCCEEEEEEEEHHHhCcCc-cCCeEEccC
Confidence 9989999999999999997764 789999964
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-19 Score=153.29 Aligned_cols=108 Identities=23% Similarity=0.453 Sum_probs=94.6
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC-----------CeEeccccCCCCCCeeccEEEEE-Eec--CCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFI-VED--ESTQ 326 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~ 326 (529)
.|.|+|+|++|++|+.+|..|.+||||++++.+..+ ..++|+++++|+||.|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 689999999999999999999999999999985432 25789999999999999999997 532 2456
Q ss_pred EEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 327 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 327 ~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
.|.|+|||++.+++|++||++.++|.++..+...+.|++|.+
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 999999999999999999999999999877677789999964
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=153.44 Aligned_cols=109 Identities=25% Similarity=0.400 Sum_probs=95.8
Q ss_pred cceEEEEEEEEecCCCccCC-CCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEE-EC
Q 009664 260 PVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD 335 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~-d~ 335 (529)
..|.|.|+|++|++|+.+|. .|.+||||++++.+... ..++|+++++++||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 57899999999999999985 69999999999985432 37899999999999999999999854 4578999999 99
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
+.+++|++||++.++|.++..+...+.|++|.+.
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9999999999999999999888888999999754
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-18 Score=148.62 Aligned_cols=111 Identities=27% Similarity=0.477 Sum_probs=95.5
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEe--cCCCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE--DESTQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~--~~~~~~l~i~v 332 (529)
+....|.|+|+|++|++|+..+ .|.+||||++++.+.. ..+++|+++++++||.|||+|.|.+. +.. ..|.|+|
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~L~i~V 99 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQ-KRLLVTV 99 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTT-SEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhC-CEEEEEE
Confidence 4467899999999999999998 6999999999997532 35789999999999999999999984 333 4699999
Q ss_pred EECCCCCC-CceeEEEEEECcccCC-CceeeEEEEcccc
Q 009664 333 YDDEGIQS-SELIGCAQVRLCELEP-GKVKDVWLKLVKD 369 (529)
Q Consensus 333 ~d~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~ 369 (529)
||++.+++ |++||++.++|.++.. +.....|++|.+.
T Consensus 100 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 100 WNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp EECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred EeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 99998876 9999999999999974 7778899999753
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=147.66 Aligned_cols=113 Identities=31% Similarity=0.448 Sum_probs=95.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|+|+|++|++|+.+|..|.+||||++++.+.+. ..++|+++++++||.|||+|.|.+... ....|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 3457899999999999999999999999999999985432 468999999999999999999998643 245899999
Q ss_pred EECCCCCCCceeEEEEEECccc------------CCCceeeEEEEcccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVKD 369 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 369 (529)
||++.+++|++||++.+++..+ .++.....|++|.+.
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 9999999999999999999853 345567889998653
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=143.92 Aligned_cols=98 Identities=24% Similarity=0.444 Sum_probs=85.9
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCC--CCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~l~i~v 332 (529)
+....|.|+|+|++|++|+..|..|.+||||++++.+.+. .+++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 3457799999999999999999999999999999985432 4689999999999999999999986542 35899999
Q ss_pred EECCCCCCCceeEEEEEECccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCEL 354 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l 354 (529)
||++.+++|++||++.+++.++
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~ 112 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSG 112 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSC
T ss_pred EECCCCCCCcEEEEEEEccccC
Confidence 9999999999999999999864
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=145.63 Aligned_cols=98 Identities=24% Similarity=0.399 Sum_probs=86.5
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 111 (166)
T 2cm5_A 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111 (166)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence 345789999999999999999999999999999998533 3678999999999999999999998643 356899999
Q ss_pred EECCCCCCCceeEEEEEECccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCEL 354 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l 354 (529)
||++.+++|++||++.+++.++
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCC
T ss_pred EECCCCCCCcEEEeEEEecccC
Confidence 9999999999999999999875
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=144.32 Aligned_cols=109 Identities=24% Similarity=0.331 Sum_probs=85.3
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+....|.|.|+|++|++|+.++..|.+||||++++.+.+.. +++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 34577999999999999999998899999999999754332 67999999999999999999998654 236899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||++.+++|++||++.+++.+ .+...+.|+.|.
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 137 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA--EGSGGGHWKEIC 137 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred EeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence 999999999999999999987 233344555553
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=135.02 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=83.4
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEecccc-CCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
+.|.|+|+|++|+++.. .|.+||||+++ . . ..+|+++ .++.||.|||+|.|.+.+. ...|.|+|||+| +
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~---~-~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~ 72 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---Q-NVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L 72 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E---T-TEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE-e---c-CEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence 56899999999998853 57899999999 3 2 2345444 4799999999999999865 357999999999 8
Q ss_pred CCCceeEEEEEECcccCCCc--eeeEEEEcccccccccCCcccc-------EEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEPGK--VKDVWLKLVKDLDVQRDTKYRG-------QVHLELLY 388 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~~~~~~G-------~i~l~l~~ 388 (529)
++|++||++.++|.++.... ....|.++.-... ..+++..| .+.+++.|
T Consensus 73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI-MADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CCSCCCCCEEEEEEEE
T ss_pred CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccc-cCCCcCcceECCCccEEEEEEEe
Confidence 89999999999999985332 2224655543221 12333344 37777665
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=131.88 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=101.4
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecC--CCCEEEEEEEECCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI 338 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~ 338 (529)
=.|+|+|.+|.+|+ |++|||+++.+. +.+++|++++ ++.||+|||.|+|.+..+ .+..|.+.|||++++
T Consensus 21 msL~V~l~~a~~Lp-----g~~Dp~akv~FR---g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 21 MALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEEESCC-----SCEEEEEEEEET---TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEEecCCC-----CCCCCeEEEEEe---ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 37999999999998 689999999995 7899999998 699999999999998754 356899999999999
Q ss_pred CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
+++++||++.++|.++..+.....+.+|... +.....++|.++++|.|..
T Consensus 93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~----n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDD----NNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp SCCEEEEEEEEESHHHHHHSEEEEEEEEECT----TSCEEEEEEEEEEEEEETT
T ss_pred cCCCEEEEEEEEhHHhccCCeEEEeecccCC----CCCccccEEEEEEEecCCC
Confidence 9999999999999999776666666677542 2334458999999999854
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=167.48 Aligned_cols=120 Identities=22% Similarity=0.416 Sum_probs=105.4
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
...|.|+|+|++|++|+.+|..|.+||||+++++ ++.++|+++++|+||.|||+|.|.+.....+.|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~---~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG---SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC---CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4679999999999999999999999999999996 6789999999999999999999999877777899999999999
Q ss_pred CCCceeEEEEEECcccCCCce----eeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEPGKV----KDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
++|++||++.+++.++..+.. ...|+++. +...|+|++++.+.
T Consensus 461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--------~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH--------EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB--------SSSSCEEEEEEEEE
T ss_pred CCCCceEEEEEEHHHhccccCCCCceeeeecCC--------CCCCceEEEEEEEE
Confidence 999999999999999865443 67899874 34679999888764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-15 Score=155.31 Aligned_cols=173 Identities=19% Similarity=0.264 Sum_probs=123.1
Q ss_pred EEeccce-eeeEEEEEccccccc-CCcchHHHHHHHHHHHhhhccc-----ccccccCCCCCC------------cc-cc
Q 009664 197 YSLREKK-KLDFKLKVVGGDIST-IPGLSDSIEATIHDAIEDSITW-----PVRKIVPILPGD------------YS-EL 256 (529)
Q Consensus 197 ~~f~~~p-~l~f~l~~~g~~~~~-~P~l~~~~~~~i~~~i~~~~~~-----P~~~~ipl~~~~------------~~-~~ 256 (529)
-++...| .|++++.++. ++.. -+--...++..+..-+.+.-.+ |-.--.+...+. .. .+
T Consensus 309 ~Sv~~~P~~I~~~l~PI~-~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t~~~~C 387 (540)
T 3nsj_A 309 ASLPSNPGLVDYSLEPLH-TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCC 387 (540)
T ss_dssp HHTTTSCEEEEEEEEEGG-GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTBCGGGC
T ss_pred HHHhhCCceEEEEEEEHH-HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCcccccc
Confidence 3444444 5889998874 3322 2333456666666666655444 211101111111 01 12
Q ss_pred cc-CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEec-CCCCEEEEEEEE
Q 009664 257 EL-KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYD 334 (529)
Q Consensus 257 ~~-~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-~~~~~l~i~v~d 334 (529)
+. .+.|.|+|+|++|++|+. |..|++||||+++++ ++.++|+++++++||+|||+|.|.+.+ ...+.|+|+|||
T Consensus 388 ~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D 463 (540)
T 3nsj_A 388 PRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD 463 (540)
T ss_dssp BSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEE
T ss_pred cccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEE
Confidence 22 357999999999999998 989999999999997 567999999999999999999998654 356789999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+|..++||+||++.++|. .+ ..+.|++|. .|.|+++++..
T Consensus 464 ~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l~-----------~G~l~~~~~~~ 503 (540)
T 3nsj_A 464 ADYGWDDDLLGSCDRSPH---SG-FHEVTCELN-----------HGRVKFSYHAK 503 (540)
T ss_dssp CCSSSCCEEEEEEEECCC---SE-EEEEEEECS-----------SSEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEee---CC-cEEEEEEcC-----------CeEEEEEEEEE
Confidence 999989999999999987 23 367888762 38888887654
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-16 Score=133.78 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=95.7
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
.....|+|++++.|.+.. ..+.+..+++. ..+..+.++||+++++... .+..++||+++++|+||+||
T Consensus 8 s~~~~G~l~~sl~y~~~~----------~~L~V~v~~a~-~~d~~g~sDPyv~v~l~~~-~~~~~~kT~v~~~tlnP~wn 75 (138)
T 1wfm_A 8 SWNQAPKLHYCLDYDCQK----------AELFVTRLEAV-TSNHDGGCDCYVQGSVANR-TGSVEAQTALKKRQLHTTWE 75 (138)
T ss_dssp CCSSCCEEEEEEEEETTT----------TEEEEEEEEEE-CCCCSSCCCEEEEEEEEET-TEEEEEECCCCCCCSSEECS
T ss_pred CCCcceEEEEEEEEeCCC----------CEEEEEEEEEE-cCCCCCCcceEEEEEEEcC-CCcccEecccCcCCCCCcCC
Confidence 345679999999997532 22333333333 3456678899999997542 22456899999999999999
Q ss_pred ceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 455 QTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 455 e~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
|.|.|.+... ....|.|+|||++.+++ ++||++.++|+++.......+||+|.+..
T Consensus 76 E~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 76 EGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp SCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred ceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence 9999998643 45789999999999876 89999999999997556678999999754
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=129.51 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=86.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||+++++.. ....++||++++++.||+|||.|+|.+..+....|.|+|||++..++++||++.++|+++....
T Consensus 24 ~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~ 101 (126)
T 1rlw_A 24 LDTPDPYVELFIST--TPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGE 101 (126)
T ss_dssp HCCCCEEEEEECTT--STTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTC
T ss_pred CCCCCCEEEEEEcc--CCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCC
Confidence 35678999887521 1247889999999999999999999997667789999999999887789999999999998777
Q ss_pred eeeeEEEcCCCCccEEEEEEEEEe
Q 009664 499 EYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 499 ~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
....||+|.+.++|+|+++++..|
T Consensus 102 ~~~~~~~L~~~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 102 KKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEETTTEEEEEEEEEECCC
T ss_pred cEEEEEEcCCCceEEEEEEEEeCC
Confidence 789999999988888888886544
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=133.59 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=80.9
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc-
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE- 497 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~- 497 (529)
+.++||+++.+ .+.+..||+++++|+||+|||.|+|.+.+ ...|.|+|||++.+++ ++||++.|+|+++..+
T Consensus 58 g~sDPYv~v~l----~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~ 131 (157)
T 2fk9_A 58 QLLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLRTT 131 (157)
T ss_dssp CCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHH
T ss_pred CCCCeEEEEEE----CCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhccc
Confidence 56789998875 23345799999999999999999999975 3589999999999886 8999999999999865
Q ss_pred ---ceeeeEEEcCCCCccEEEEEEEEE
Q 009664 498 ---GEYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 498 ---~~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
...+.||+|++ .|+|+|+++|.
T Consensus 132 ~~~~~~~~W~~L~~--~G~i~l~l~~~ 156 (157)
T 2fk9_A 132 GASDTFEGWVDLEP--EGKVFVVITLT 156 (157)
T ss_dssp TTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred CCCCcccEEEECCC--CcEEEEEEEEE
Confidence 56799999986 79999999984
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=132.07 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=73.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~ 337 (529)
.+.|.|+|+|++|+++. ..|.+||||++. . . ..+|++++ ++.||+|||+|.|.+.+.. ..|.|+|||+|
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~---~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~-~~L~~~V~D~d- 80 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V---Q-NVESTTIAVRGSQPSWEQDFMFEINRLD-LGLTVEVWNKG- 80 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E---T-TEEEECCCEESSSCEEEEEEEEECCCTT-SEEEEEEEECC-
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e---c-ceEEEEecCCCCCCCCCCEEEEEeeCCC-CEEEEEEEECC-
Confidence 35789999999999885 257899999999 3 2 34566654 6999999999999998654 58999999999
Q ss_pred CCCCceeEEEEEECcccCC
Q 009664 338 IQSSELIGCAQVRLCELEP 356 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (529)
+++|++||++.++|.++..
T Consensus 81 ~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp SSCCEEEEEEEEEGGGSCB
T ss_pred CCCCceEEEEEEEHHHhcc
Confidence 8899999999999999853
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-15 Score=126.96 Aligned_cols=100 Identities=18% Similarity=0.306 Sum_probs=85.3
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC---CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+.+++|+++++ ..+++||++++++.||+|||.|+|.+.++ ....|.|+|||++.+++ ++||++.++|+++.
T Consensus 25 g~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~ 99 (140)
T 2dmh_A 25 GKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLT 99 (140)
T ss_dssp SCCCEEEEEEC-----SSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTC
T ss_pred CCCCeEEEEEE-----CCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhc
Confidence 56789998875 34679999999999999999999999754 46899999999999876 79999999999998
Q ss_pred ccceeeeEEE---cCCC----CccEEEEEEEEEeCC
Q 009664 496 LEGEYTDCFE---LDGT----KSGKLKLHLKWMPQP 524 (529)
Q Consensus 496 ~~~~~~~w~~---L~~~----~~G~i~l~~~~~~~~ 524 (529)
.......||+ |.+. ..|+|+|++.|.|.+
T Consensus 100 ~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 100 GDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp SSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred cCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence 8777789988 6542 359999999999854
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=164.34 Aligned_cols=111 Identities=29% Similarity=0.576 Sum_probs=101.2
Q ss_pred ccCcceEEEEEEEEecCCCc---cCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~ 333 (529)
+..+.|.|+|+|++|++|+. +|..|++||||++++.+...++++|+++++++||+|||+|.|.+.....+.|.|+||
T Consensus 13 e~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~ 92 (749)
T 1cjy_A 13 EHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLM 92 (749)
T ss_dssp CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEE
T ss_pred cCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEE
Confidence 34678999999999999998 888899999999999865557899999999999999999999998866679999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|+|.++ |++||++.++|.++..+...+.|++|.+
T Consensus 93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~ 126 (749)
T 1cjy_A 93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 126 (749)
T ss_dssp ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence 999998 9999999999999988888899999964
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-16 Score=134.92 Aligned_cols=127 Identities=20% Similarity=0.388 Sum_probs=96.1
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
+...|+|.+++.|.+.. ..+.+..++ .+...+..+.++||+++++.....+..++||+++++|.||+|
T Consensus 4 ~~~~G~i~~~l~y~~~~----------~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~w 73 (141)
T 1v27_A 4 GSSGGQLSIKLWFDKVG----------HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 73 (141)
T ss_dssp CCCCCEEEEEEEEETTT----------TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCC
T ss_pred CCcccEEEEEEEEeCCC----------CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCcc
Confidence 45689999999998643 222332222 222334456788999988655444567899999999999999
Q ss_pred CceEEEEe-e--cCCCCEEEEEEEECCCCC---CCeeEEEEEecccccccceeeeEEEcCCCCccE
Q 009664 454 NQTFDFVV-E--DGLHDMLIAEVWDHDTFG---KDYMGRCILTLTRVILEGEYTDCFELDGTKSGK 513 (529)
Q Consensus 454 ne~f~f~v-~--~~~~~~L~i~V~D~~~~~---~d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 513 (529)
||.|+|.+ + +.....|.|+|||++..+ +++||++.++|.++..+. ..+||+|.+...|+
T Consensus 74 ne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 74 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGP 138 (141)
T ss_dssp CCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSCC
T ss_pred ccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccCC
Confidence 99999984 3 224579999999999886 479999999999987655 78999999766553
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-16 Score=134.83 Aligned_cols=125 Identities=17% Similarity=0.370 Sum_probs=95.2
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcC-CcccCCCceEEEEEEEccCCeeEeeecccCCCCC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNG-EKALKSGANGTEAIELEKDASQKRREVVNDCLNP 451 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~-~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP 451 (529)
+...+|+|.+++.|.+.. ..+.+..+++ +...+ ..+.++||+++++........++||+++++|.||
T Consensus 5 ~~~~~G~l~~sl~y~~~~----------~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP 74 (148)
T 3fdw_A 5 NIFVTGRIAFSLKYEQQT----------QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74 (148)
T ss_dssp -CCCCCEEEEEEEEETTT----------TEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSC
T ss_pred CCccceEEEEEEEEeCCC----------CEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCC
Confidence 345789999999998643 2223332222 21122 3567889999987544333468999999999999
Q ss_pred ccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 452 IWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 452 ~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
+|||.|.|.+... ....|.|+|||++.+++ ++||++.++|+++.......+||+|.+.
T Consensus 75 ~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 75 LYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp EEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred cEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 9999999998653 35689999999999876 8999999999999877777899999875
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=132.87 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=94.0
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCc
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~ 452 (529)
.....|++.+++.|.+... .+.+..+++ +...+ .+.++||+++++........++||+++++|.||+
T Consensus 9 ~~~~~G~~~lsL~y~~~~~----------~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 77 (153)
T 3fbk_A 9 SHKVQGAGQLRLSIDAQDR----------VLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77 (153)
T ss_dssp ----CCCCEEEEEEEESSS----------EEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCE
T ss_pred ccCCCCEEEEEEEEECCCC----------EEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCc
Confidence 4567899999999997642 223322222 22223 4678899999977555456789999999999999
Q ss_pred cCceEEEEeecC-CCCEEEEEEEECCCCC--CCeeEEEEEecccccc-cceeeeEEEcCCCCcc
Q 009664 453 WNQTFDFVVEDG-LHDMLIAEVWDHDTFG--KDYMGRCILTLTRVIL-EGEYTDCFELDGTKSG 512 (529)
Q Consensus 453 wne~f~f~v~~~-~~~~L~i~V~D~~~~~--~d~lG~~~i~L~~l~~-~~~~~~w~~L~~~~~G 512 (529)
|||.|.|.+... ....|.|+|||++.++ +++||++.++|+++.. .....+||+|.+...|
T Consensus 78 wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g 141 (153)
T 3fbk_A 78 FHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG 141 (153)
T ss_dssp EEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred cccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence 999999999422 3356999999999875 4799999999999975 5667899999976554
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=141.71 Aligned_cols=111 Identities=32% Similarity=0.459 Sum_probs=94.1
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecCC--CCEEEEEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD 334 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~l~i~v~d 334 (529)
+..|.|.|+|++|++|+.+|..|.+||||++++.+.+. .+++|+++++++||.|||+|.|.+.... ...|.|+|||
T Consensus 147 p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 226 (284)
T 2r83_A 147 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 226 (284)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence 46789999999999999999999999999999975433 4689999999999999999999986542 3479999999
Q ss_pred CCCCCCCceeEEEEEECccc------------CCCceeeEEEEcccc
Q 009664 335 DEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVKD 369 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 369 (529)
++.++++++||++.+++..+ .++.....|++|.+.
T Consensus 227 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 227 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred CCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99999999999999999763 244566789998653
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=129.01 Aligned_cols=119 Identities=20% Similarity=0.403 Sum_probs=87.6
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
.+|+|.+++.|.+.. ..+.+..++ .+...+..+.++||+++++.....+..++||+++++|.||+|||
T Consensus 3 ~~G~l~~~l~y~~~~----------~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne 72 (129)
T 2bwq_A 3 LSGQLSIKLWFDKVG----------HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 72 (129)
T ss_dssp CCCEEEEEEEEETTT----------TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEE
T ss_pred eeEEEEEEEEEccCC----------CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCcccc
Confidence 469999999998643 222222222 22233445678899999976544456789999999999999999
Q ss_pred eEEEEe-e--cCCCCEEEEEEEECCCCC---CCeeEEEEEecccccccceeeeEEEcC
Q 009664 456 TFDFVV-E--DGLHDMLIAEVWDHDTFG---KDYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 456 ~f~f~v-~--~~~~~~L~i~V~D~~~~~---~d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
.|.|.+ + +.....|.|+|||++..+ +++||++.++|+++..++ ..+||+|+
T Consensus 73 ~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 73 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999985 3 235679999999999886 579999999999987765 78999985
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-16 Score=134.60 Aligned_cols=126 Identities=20% Similarity=0.361 Sum_probs=94.7
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++.+.|.. ..+.+..++ .+...+..+.+++|+++++........++||++++++.||+|
T Consensus 16 ~~~~G~l~~~l~~~~------------~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~w 83 (149)
T 1a25_A 16 MERRGRIYIQAHIDR------------EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEW 83 (149)
T ss_dssp -CTTCEEEEEEEESS------------SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEE
T ss_pred CCcceEEEEEEEecC------------CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcC
Confidence 355799999998731 122332222 222334456788999999765433467899999999999999
Q ss_pred CceEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccEE
Q 009664 454 NQTFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 514 (529)
Q Consensus 454 ne~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 514 (529)
||+|+|.+... ....|.|+|||++.+++ ++||++.++|.++... ...+||+|.+..+|++
T Consensus 84 ne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~ 145 (149)
T 1a25_A 84 NETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY 145 (149)
T ss_dssp EEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred CcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence 99999999754 35689999999999875 7999999999998765 4689999998766654
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-15 Score=133.44 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=91.4
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhh--hhhhhcCCcccCCCceEEEEEEEcc-CCeeEeeecccCCCCCc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSL--EKVLTNGEKALKSGANGTEAIELEK-DASQKRREVVNDCLNPI 452 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~kT~v~~~t~nP~ 452 (529)
....|+|++++.|.+.. ..+.+..+ +.+...+..+.++||+++++..... ...++||+++++|+||+
T Consensus 26 ~~~~G~l~~sl~y~~~~----------~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~ 95 (155)
T 2z0u_A 26 AVGATRIQIALKYDEKN----------KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLV 95 (155)
T ss_dssp --CCEEEEEEEEEETTT----------TEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEE
T ss_pred cCCcEEEEEEEEEcCCC----------CEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCc
Confidence 35679999999997543 22223222 2333445667889999999754221 12478999999999999
Q ss_pred cCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccc-cceeeeEEEcC
Q 009664 453 WNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL-EGEYTDCFELD 507 (529)
Q Consensus 453 wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~-~~~~~~w~~L~ 507 (529)
|||+|+|.++.. ....|.|+|||++.+++ ++||++.++|+++.. .....+||+|.
T Consensus 96 wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 96 FNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred cccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999998642 35789999999999877 899999999999964 45568999986
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-15 Score=127.01 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=78.5
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEE-eec--CCCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
..+.++||+++++........++||+++++|.||+|||.|.|. +.. .....|.|+|||++.+++ ++||++.++|++
T Consensus 36 ~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 115 (134)
T 2b3r_A 36 DGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115 (134)
T ss_dssp TSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGG
T ss_pred CCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhh
Confidence 3567889999998754445678999999999999999999999 763 256799999999999876 799999999999
Q ss_pred ccccceeeeEEEcCCCCcc
Q 009664 494 VILEGEYTDCFELDGTKSG 512 (529)
Q Consensus 494 l~~~~~~~~w~~L~~~~~G 512 (529)
+.......+||+|.+...|
T Consensus 116 l~~~~~~~~W~~L~~~~~g 134 (134)
T 2b3r_A 116 FNLSKETVKWYQLTAATYL 134 (134)
T ss_dssp SCTTSCEEEEEECBC----
T ss_pred ccCCCCcceeEECCCccCC
Confidence 9877778999999986543
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=127.53 Aligned_cols=123 Identities=19% Similarity=0.248 Sum_probs=93.6
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++++.|.+.. ..+.+..++ .+...+..+.++||+++++.. ....++||++++++.||+|
T Consensus 9 ~~~~G~l~~~l~y~~~~----------~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~w 76 (141)
T 2d8k_A 9 RENLGRIQFSVGYNFQE----------STLTVKIMKAQELPAKDFSGTSDPFVKIYLLP--DKKHKLETKVKRKNLNPHW 76 (141)
T ss_dssp CCCCCEEEEEEEECSSS----------CCEEEEEEEEESCCCCSSSSCCCEEEEEEEES--CCSSEEECCCCTTCSSCCC
T ss_pred CceeeEEEEEEEEeCCC----------CEEEEEEEEeECCCCCCCCCCCCcEEEEEEEC--CCCccEeCceEcCCCCCcc
Confidence 45679999999997543 223333222 222334456788999988742 2346789999999999999
Q ss_pred CceEEEEe-e--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 454 NQTFDFVV-E--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 454 ne~f~f~v-~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
||.|.|.+ + +.....|.|+|||++.+++ ++||++.++|+++........||+|.+..
T Consensus 77 ne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 77 NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp CEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred ccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 99999985 2 2246789999999999876 89999999999998877789999998653
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-15 Score=128.82 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=93.5
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++++.|.+.. ..+.+..++ .+...+..+.+++|+++++.. .+.+++||+++++|.||+|
T Consensus 25 ~~~~G~l~~~l~y~~~~----------~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP~w 92 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDFQN----------NQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKKKFETKVHRKTLNPVF 92 (152)
T ss_dssp -CCCCEEEEEEEEETTT----------TEEEEEEEEEESCCCCSTTSCCCEEEEEEEET--TCCSCEECCCCTTCSSCEE
T ss_pred CCCceEEEEEEEEeCCC----------CEEEEEEEEeECCCCccCCCCcCeEEEEEEEc--CCCceEeccccCCCCCCcC
Confidence 45679999999998643 222333222 222334456788999998652 2346789999999999999
Q ss_pred CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 454 NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 454 ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
||.|.|.+... ....|.|+|||++.+++ ++||++.++|+++.......+||+|.+.
T Consensus 93 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 93 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp EEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred cccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 99999998643 46899999999999875 8999999999999777778999999864
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=125.24 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=85.5
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.++||+++++ ..+++||++++ ++.||+|||.|+|.+.+ ....|.|+|||++.+++ ++||++.++|+++..
T Consensus 28 ~g~~dpyv~v~~-----~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~ 101 (136)
T 1wfj_A 28 LNNMDPYVQLTC-----RTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFV 101 (136)
T ss_dssp SCSSCCCEEEES-----SSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHH
T ss_pred CCCcCceEEEEE-----CCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcc
Confidence 457789998874 44578999998 89999999999999987 67799999999998876 899999999999965
Q ss_pred cc-eeeeEEEcC--CCCccEEEEEEEEEeCCC
Q 009664 497 EG-EYTDCFELD--GTKSGKLKLHLKWMPQPI 525 (529)
Q Consensus 497 ~~-~~~~w~~L~--~~~~G~i~l~~~~~~~~~ 525 (529)
.+ ...+||+|. +...|+|+|++.|.|...
T Consensus 102 ~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 102 EGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp HSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred CCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence 44 358999995 446799999999999653
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=127.13 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=82.7
Q ss_pred cccCCCceEEEEEEEcc-CCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEK-DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.+++|+++++..... ...++||+++++|.||+|||.|.|.+.+ ....|.|+|||++..++ ++||++.++|+++..
T Consensus 38 ~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 116 (153)
T 3b7y_A 38 LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPT 116 (153)
T ss_dssp ---CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCB
T ss_pred CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEECCCCcCCCeeEEEEEEHHHccc
Confidence 35678999998753111 1367899999999999999999999976 45789999999999876 899999999999976
Q ss_pred ccee------eeEEEcCC-----CCccEEEEEEEEEe
Q 009664 497 EGEY------TDCFELDG-----TKSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~------~~w~~L~~-----~~~G~i~l~~~~~~ 522 (529)
.... .+||+|.+ ...|+|+|++.|.|
T Consensus 117 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 117 ENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 5432 59999964 34799999999986
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=123.39 Aligned_cols=95 Identities=17% Similarity=0.359 Sum_probs=81.2
Q ss_pred ccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 498 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~ 498 (529)
+.++||+++.+ .+....+|+++++|+||+|||.|+|.+.+. ..|.|+|||++..++ ++||++.++|+++..++
T Consensus 36 ~~~DPyv~v~l----~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~ 109 (136)
T 1gmi_A 36 FLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109 (136)
T ss_dssp CCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTT
T ss_pred cCcCcEEEEEE----CCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccC
Confidence 34789999875 233457999999999999999999999865 789999999998876 79999999999998753
Q ss_pred --eeeeEEEcCCCCccEEEEEEEEEe
Q 009664 499 --EYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 499 --~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
..+.|++|++ .|+|+|+++|.+
T Consensus 110 ~~~~~~w~~L~~--~G~i~l~l~~~~ 133 (136)
T 1gmi_A 110 SRHFEDWIDLEP--EGKVYVIIDLSG 133 (136)
T ss_dssp CSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred CCCccEEEEcCC--CeEEEEEEEEEe
Confidence 3589999986 699999999976
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=125.89 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=93.0
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++++.|.+.. ..+.+..+++ +...+..+.+++|+++++... ..+++||+++++|.||+|
T Consensus 17 ~~~~G~l~~~l~y~~~~----------~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~w 84 (143)
T 3f04_A 17 VEKLGKLQYSLDYDFQN----------NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKKKFETKVHRKTLNPVF 84 (143)
T ss_dssp CCCCCEEEEEEEEETTT----------TEEEEEEEEEECCCCBGGGBCCCEEEEEEEESC--CSCCEECCCCCSCSSCEE
T ss_pred ccCeEEEEEEEEEeCCC----------CEEEEEEEEecCCCCCCCCCCcCcEEEEEEECC--CCccEECccCcCCCCCcC
Confidence 45679999999998643 2222222222 222334567889999987432 345789999999999999
Q ss_pred CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 454 NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 454 ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
||.|.|.+... ....|.|+|||++.+++ ++||++.++|+++.......+||+|..
T Consensus 85 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred cCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 99999998633 56899999999999876 899999999999988777899999975
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=150.50 Aligned_cols=124 Identities=17% Similarity=0.306 Sum_probs=102.0
Q ss_pred cceEEEEEEEEecCCCccCC--CCCCCcEEEEEEecC--CCCeEeccccCCC-CCCeeccEEEEEEecCCCCEEEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPL--PEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYD 334 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~~~~~l~i~v~d 334 (529)
..+.|+|+|++|++|+..+. .|.+||||++.+.+. ...++||++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 56899999999999999874 688999999999632 2357899999987 999999999999987665689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
+|.+++|++||++.++|..+..|. .|++|.... ...-..|.|.+.+.|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~---g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN---GDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT---SCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC---cCCCCceEEEEEEEEE
Confidence 999999999999999999998753 588885421 1112457888888774
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-15 Score=128.81 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=94.3
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCc
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~ 452 (529)
.....|+|++++.|.+.. ..+.+..++ .+...+..+ ++||+++++........++||+++++|.||+
T Consensus 6 ~~~~~G~l~~~l~y~~~~----------~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 74 (142)
T 2dmg_A 6 SGSPLGQIQLTIRHSSQR----------NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPV 74 (142)
T ss_dssp CSCSSCEEEEEEEEETTT----------TEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCE
T ss_pred CCCCcceEEEEEEEeCCC----------CEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCC
Confidence 345679999999998643 222232222 222334455 8899999976544445789999999999999
Q ss_pred cCceEEEEeecC--CCCEEEEEEEECCCCC--C-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 453 WNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 453 wne~f~f~v~~~--~~~~L~i~V~D~~~~~--~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
|||.|.|.+... ....|.|+|||++.++ + ++||++.++|+++.......+||+|.+..
T Consensus 75 wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 75 FDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137 (142)
T ss_dssp EEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred cCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence 999999998532 3468999999999875 3 59999999999987766778999998753
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=123.17 Aligned_cols=97 Identities=24% Similarity=0.474 Sum_probs=81.9
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCC-----------CC-CeeE
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-----------GK-DYMG 485 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~-----------~~-d~lG 485 (529)
..+.++||+.+++ +.+++||+++++|.||.|||.|.|.+.++ .+.|.|+|||++.. ++ ++||
T Consensus 34 ~~g~~dpyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG 107 (148)
T 3kwu_A 34 KTGSSDPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLG 107 (148)
T ss_dssp TTSCCCEEEEEEE-----TTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEE
T ss_pred CCCCcCeEEEEEE-----CCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCccccccccccCCCCccEE
Confidence 3467889998886 56789999999999999999999999764 47899999999985 44 8999
Q ss_pred EEEEecccccccceeeeEEEcCC-----CCccEEEEEEEEEe
Q 009664 486 RCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKWMP 522 (529)
Q Consensus 486 ~~~i~L~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~~~ 522 (529)
++.++|+++ .....+||+|.. ...|+|+|++.+.-
T Consensus 108 ~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 108 QTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp EEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred EEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence 999999998 345689999984 24699999998863
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=125.96 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=91.6
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhh-cC------CcccCCCceEEEEEEEccCCeeEeeecc
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLT-NG------EKALKSGANGTEAIELEKDASQKRREVV 445 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~-~~------~~~~~~~~l~v~~~~~~~~~~~~kT~v~ 445 (529)
.....|+|++++.|.+.. ..+.+..+++ +.. .+ ..+.++||+++++... ..+++||+++
T Consensus 8 ~~~~~G~l~~~l~y~~~~----------~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~--~~~~~kT~v~ 75 (147)
T 2enp_A 8 SKYQLGMLHFSTQYDLLH----------NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD--QKNSKQTGVK 75 (147)
T ss_dssp SCCCCCEEEEEEEEETTT----------TEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETC--CSSCEECCCC
T ss_pred CCCcceEEEEEEEEcCCC----------CEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeC--CCcceEeecc
Confidence 446789999999998643 2222222222 111 01 1246889999987532 2357899999
Q ss_pred cCCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 446 NDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 446 ~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
+++.||+|||.|.|.+... ....|.|+|||++.+++ ++||++.++|+++........|++|.+.
T Consensus 76 ~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 76 RKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp CSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred cCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 9999999999999998642 34689999999999876 7999999999999776667899999864
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=127.48 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=92.2
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|++++.|.+.. ..+.+..++ .+...+..+.++||+++++........++||+++++|.||+|
T Consensus 8 ~~~~G~l~~~l~y~~~~----------~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 77 (159)
T 1tjx_A 8 LEKLGDICFSLRYVPTA----------GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77 (159)
T ss_dssp GGCCCEEEEEEEEETTT----------TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEE
T ss_pred cCcCCeEEEEEEEcCCC----------CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcc
Confidence 45679999999998643 222332222 222334456789999998754322335789999999999999
Q ss_pred CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccc----------ccc--ceeeeEEEcCCCCc
Q 009664 454 NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV----------ILE--GEYTDCFELDGTKS 511 (529)
Q Consensus 454 ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l----------~~~--~~~~~w~~L~~~~~ 511 (529)
||.|.|.+... ....|.|+|||++.+++ ++||++.++++.+ ... ....+||+|.+...
T Consensus 78 ne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~~ 150 (159)
T 1tjx_A 78 NESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEE 150 (159)
T ss_dssp EEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHHH
T ss_pred cceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCccc
Confidence 99999998643 35689999999999875 8999999999953 322 34689999987533
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=123.62 Aligned_cols=104 Identities=19% Similarity=0.347 Sum_probs=80.0
Q ss_pred cccCCCceEEEEEEEccC-CeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKD-ASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.+++|+++++.....+ ..++||++++++.||.|||.|.|.+.. ....|.|+|||++.+++ ++||++.++|.++..
T Consensus 26 ~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~ 104 (176)
T 3m7f_B 26 LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPT 104 (176)
T ss_dssp CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEECC----CEEEEEEEEESCSCCB
T ss_pred CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccc
Confidence 456889999987542111 157899999999999999999999974 45789999999998876 899999999999987
Q ss_pred ccee-e-----eEEEcCCC-----CccEEEEEEEEEeC
Q 009664 497 EGEY-T-----DCFELDGT-----KSGKLKLHLKWMPQ 523 (529)
Q Consensus 497 ~~~~-~-----~w~~L~~~-----~~G~i~l~~~~~~~ 523 (529)
.... . +||+|... ..|+|+|++.|.|.
T Consensus 105 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 105 ENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred cCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 6443 2 89999742 47999999999985
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=123.40 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=84.0
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|.+++.|.+.. ..+.+..++ .+...+..+.+++|+++++........++||++++++.||+|||.
T Consensus 2 ~G~l~~sl~y~~~~----------~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~ 71 (138)
T 3n5a_A 2 RGELLLSLCYNPSA----------NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNES 71 (138)
T ss_dssp CCEEEEEEEEETTT----------TEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEE
T ss_pred CcEEEEEEEEcCCC----------CeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcce
Confidence 69999999998643 222222222 222234456788999998765433446789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcC
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
|.|.+... ....|.|+|||++.+++ ++||++.++|+++. ....+|++|.
T Consensus 72 f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~ 123 (138)
T 3n5a_A 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMI 123 (138)
T ss_dssp EEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHH
T ss_pred EEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHH
Confidence 99998643 34689999999999876 79999999999743 1224455444
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=129.37 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=90.2
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCC-cccCCCceEEEEEEEccCCeeEeeecccCCCCCc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGE-KALKSGANGTEAIELEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~ 452 (529)
....|+|++++.|. . ..+.+..++ .+...+. .+.+++|+++++........++||+++++|.||+
T Consensus 15 ~~~~G~l~~~l~y~-~-----------~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 82 (171)
T 2q3x_A 15 TPAMGDIQIGMEDK-K-----------GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPL 82 (171)
T ss_dssp --CCCEEEEEEEEE-T-----------TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCE
T ss_pred CCCccEEEEEEEEC-C-----------CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCC
Confidence 34579999999993 1 122332222 2222332 4678899999876532223578999999999999
Q ss_pred cCceEEEEeecCCCCEEEEEEE-ECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 453 WNQTFDFVVEDGLHDMLIAEVW-DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 453 wne~f~f~v~~~~~~~L~i~V~-D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|||+|+|.+.. ....|.|+|| |++.+++ ++||++.++|+++.......+||+|.+.
T Consensus 83 wne~f~f~v~~-~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 83 YQQSLVFDESP-QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp EEEEEECSSCC-TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCcEEEEEecC-CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 99999999853 5678999999 9999876 8999999999999877778999999864
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=122.04 Aligned_cols=97 Identities=24% Similarity=0.390 Sum_probs=81.7
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+.++||+++.+ +.+++||++++++.||.|||.|.|.+.+. ...|.|+|||++..++ ++||++.++|+++..
T Consensus 30 ~~g~~dpyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~ 103 (133)
T 2ep6_A 30 FSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD 103 (133)
T ss_dssp SSSCCCEEEEEEE-----TTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEEEECCBCEEEGGGCCS
T ss_pred CCCCcCeEEEEEE-----CCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCCCCCCCeeEEEEEEHHHccC
Confidence 3457789998875 44678999999999999999999999864 5789999999999865 899999999999865
Q ss_pred cceeeeEEEcCC-----CCccEEEEEEEEEe
Q 009664 497 EGEYTDCFELDG-----TKSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~~~w~~L~~-----~~~G~i~l~~~~~~ 522 (529)
.. .+||+|.+ ...|+|+|+++|..
T Consensus 104 ~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 104 GQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp SC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred CC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 33 58999974 35799999998863
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-15 Score=129.79 Aligned_cols=123 Identities=20% Similarity=0.369 Sum_probs=91.3
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccC---------CeeEeeec
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKD---------ASQKRREV 444 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~kT~v 444 (529)
...+|+|++++.|.. ..+.+..++ .+...+..+.++||+++++...... ..++||++
T Consensus 3 ~~~~G~i~~~l~y~~------------~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v 70 (142)
T 1rh8_A 3 HPITGEIQLQINYDL------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY 70 (142)
T ss_dssp CCCCCEEEEEEEEET------------TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTT
T ss_pred CCcceEEEEEEEEcC------------CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccc
Confidence 346899999999971 122333222 2223345677899999886322111 13679999
Q ss_pred ccCCCCCccCceEEEE-ee--cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 445 VNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 445 ~~~t~nP~wne~f~f~-v~--~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
+++|.||+|||.|.|. +. +.....|.|+|||++.+++ ++||++.++|+++.......+||+|.+..
T Consensus 71 ~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 71 VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp THHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred cCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 9999999999999997 54 3356799999999999876 89999999999997766678999999754
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-15 Score=144.27 Aligned_cols=97 Identities=32% Similarity=0.424 Sum_probs=85.0
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
.+..|.|+|+|++|++|+.+|..|.+||||++++.+.+ ..+++|+++++++||.|||+|.|.+... ....|.|+||
T Consensus 148 ~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 227 (296)
T 1dqv_A 148 LPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVV 227 (296)
T ss_dssp ETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEE
T ss_pred ccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEE
Confidence 35679999999999999999999999999999997533 2578999999999999999999988653 2347999999
Q ss_pred ECCCCCCCceeEEEEEECccc
Q 009664 334 DDEGIQSSELIGCAQVRLCEL 354 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l 354 (529)
|++.+++|++||++.+++.++
T Consensus 228 d~d~~~~~~~iG~~~i~l~~~ 248 (296)
T 1dqv_A 228 DYDCIGHNEVIGVCRVGPEAA 248 (296)
T ss_dssp ECCSSSCCEEEEECCCSSCTT
T ss_pred eCCCCCCCceEEEEEECCccC
Confidence 999999999999999999875
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=123.20 Aligned_cols=124 Identities=18% Similarity=0.315 Sum_probs=91.9
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCc
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~ 452 (529)
.....|+|.+++.|.+.. ..+.+..++ .+...+..+.++||+++++........++||++++++.||+
T Consensus 11 ~~~~~G~l~~~l~y~~~~----------~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~ 80 (142)
T 2chd_A 11 QATTLGALEFSLLYDQDN----------SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80 (142)
T ss_dssp ---CCCEEEEEEEEEGGG----------TEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCE
T ss_pred CCCccceEEEEEEEeCCC----------CEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCc
Confidence 345679999999998643 122222222 22233445678899999875433335789999999999999
Q ss_pred cCceEEEE-eec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 453 WNQTFDFV-VED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 453 wne~f~f~-v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
|||.|.|. +.. .....|.|+|||++.+++ ++||++.++|+++.......-|++|+.
T Consensus 81 wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 81 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred CcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 99999998 542 224789999999999877 899999999999987777788888875
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-14 Score=123.90 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=81.7
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|.+++.|.|.. ..+.+..++ .+...+..+.+++|+++++........++||+++++|.||+|
T Consensus 13 ~~~~G~l~~~l~y~~~~----------~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~w 82 (153)
T 1w15_A 13 PSGRGELLVSLCYQSTT----------NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82 (153)
T ss_dssp ---CCEEEEEEEEETTT----------TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEE
T ss_pred CccccEEEEEEEEcCCC----------CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCee
Confidence 45679999999998643 222222222 222234456788999999765332234789999999999999
Q ss_pred CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCC
Q 009664 454 NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG 508 (529)
Q Consensus 454 ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~ 508 (529)
||.|+|.+... ....|.|+|||++.+++ ++||++.++|++. .....+||+|..
T Consensus 83 ne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 83 NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp EEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred cceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 99999999754 34689999999998876 8999999999982 222344555443
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=117.87 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCC-cccCCCceEEEEEEEccCCeeEeeecccCCCCC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGE-KALKSGANGTEAIELEKDASQKRREVVNDCLNP 451 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP 451 (529)
.....|+|.+++.|.+... .+.+..++ .+...+. .+.++||+++++.. .+..++||+++++|.||
T Consensus 4 ~~~~~G~l~~~l~y~~~~~----------~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~--~~~~~~kT~v~~~t~nP 71 (138)
T 1ugk_A 4 GSSGLGTLFFSLEYNFERK----------AFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHKVKTRVLRKTLDP 71 (138)
T ss_dssp CCCCCCEEEEEEEEEGGGT----------EEEEEEEEEESCCCCBTTTTBCEEEEEEEEET--TTCSEEECCCCSSCSSC
T ss_pred CCCccEEEEEEEEEECCCC----------EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEec--CCCceEecCcCcCCCCC
Confidence 3456799999999986532 22222222 2222233 26788999988642 23478999999999999
Q ss_pred ccCceEEEE-eecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccce-eeeEEEcCCC
Q 009664 452 IWNQTFDFV-VEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE-YTDCFELDGT 509 (529)
Q Consensus 452 ~wne~f~f~-v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~-~~~w~~L~~~ 509 (529)
+|||.|+|. ++.. ....|.|+|||++.+++ ++||++.++|+++..... ..-|++|...
T Consensus 72 ~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred cEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 999999995 6532 45799999999998876 899999999999977544 4667999864
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=122.86 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=81.8
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
...+|+|++++.|.+.. ..+.+..++ .+...+..+.++||+++++........++||+++++|.||+|
T Consensus 20 ~~~~G~l~~~l~y~~~~----------~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 89 (166)
T 2cm5_A 20 IEERGKILVSLMYSTQQ----------GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF 89 (166)
T ss_dssp CCCCCEEEEEEEEETTT----------TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEE
T ss_pred cCccceEEEEEEEECCC----------CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcc
Confidence 45779999999998643 222222222 222334456789999998754333356899999999999999
Q ss_pred CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 454 NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 454 ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
||.|.|.+... ....|.|+|||++.+++ ++||++.++|+++
T Consensus 90 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 90 NEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp EEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 99999999643 36799999999999876 8999999999985
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-15 Score=154.30 Aligned_cols=127 Identities=17% Similarity=0.279 Sum_probs=23.8
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCC---CCCeeccEEEEEEecCCCCEEEEEEEE
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND---LNPIWNEHFEFIVEDESTQHLVVRIYD 334 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t---~nP~Wne~f~~~v~~~~~~~l~i~v~d 334 (529)
.+..|.|+|+|++|++|+++| ||||+++++ +....||+++++| +||+|||+|.|.+... .+.|.++|||
T Consensus 7 ~r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d 78 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYR 78 (483)
T ss_dssp EEEEECC----------------------------------------------------CCEECC---------------
T ss_pred ceeccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEe
Confidence 356799999999999999876 999999997 2346789999999 9999999999986543 4689999999
Q ss_pred C-C---CCCCCceeEEEEEECcccCCCceeeEEEEccccccc-------------------ccCCccccEEEEEEEEEEc
Q 009664 335 D-E---GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV-------------------QRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 335 ~-~---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~-------------------~~~~~~~G~i~l~l~~~p~ 391 (529)
+ | ..++|++||++.+++.++..+...+.|++|...... .+.....|.|++++.|.+.
T Consensus 79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 4 4 367899999999999999888888999999542210 0112346999999999865
Q ss_pred c
Q 009664 392 G 392 (529)
Q Consensus 392 ~ 392 (529)
.
T Consensus 159 ~ 159 (483)
T 3bxj_A 159 S 159 (483)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=117.81 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=80.0
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCC----CCeeEEEEEeccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG----KDYMGRCILTLTR 493 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~----~d~lG~~~i~L~~ 493 (529)
..+.++||+++++ ....+++||+++++|.||+|||.|.|.+.+. +.|.|+|||++..+ +++||++.+++++
T Consensus 22 ~~g~sDpyv~v~~---~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~ 96 (132)
T 3pyc_A 22 FFRLPDPFAKIVV---DGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKKQGAGFLGCVRLLSNA 96 (132)
T ss_dssp TTCCCCEEEEEEE---TTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSSTTTTEEEEEEECHHH
T ss_pred CCCCcCeEEEEEE---CCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCCCCCCceEEEEEeHHH
Confidence 4457889998875 2224789999999999999999999999764 34999999999876 4899999999999
Q ss_pred cccc-ceeeeEEEcCCC-------CccEEEEEEEEE
Q 009664 494 VILE-GEYTDCFELDGT-------KSGKLKLHLKWM 521 (529)
Q Consensus 494 l~~~-~~~~~w~~L~~~-------~~G~i~l~~~~~ 521 (529)
+... ....+|++|... ..|+|++++.++
T Consensus 97 l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r 132 (132)
T 3pyc_A 97 ISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR 132 (132)
T ss_dssp HHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred hhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence 8433 334689999753 379999999864
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=119.42 Aligned_cols=97 Identities=22% Similarity=0.343 Sum_probs=81.3
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccc-
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG- 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~- 498 (529)
.++||+++++ +.+++||+++++|.||+|||.|.|.+.. ...|.|+|||++.+++ ++||++.++|.++....
T Consensus 56 ~sDPYv~v~~-----~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~ 128 (173)
T 2nq3_A 56 GPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNN 128 (173)
T ss_dssp CCCEEEEEEE-----TTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTT
T ss_pred CCCeEEEEEE-----CCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCC
Confidence 3779998875 3378999999999999999999999853 7899999999999876 79999999999987532
Q ss_pred -e---eeeEEEcCCC-----CccEEEEEEEEEeCC
Q 009664 499 -E---YTDCFELDGT-----KSGKLKLHLKWMPQP 524 (529)
Q Consensus 499 -~---~~~w~~L~~~-----~~G~i~l~~~~~~~~ 524 (529)
. ...|++|... ..|+|.+.+.+.++.
T Consensus 129 ~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 129 MKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp TEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred CCcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence 1 2679999753 479999999998763
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=138.51 Aligned_cols=109 Identities=35% Similarity=0.558 Sum_probs=94.7
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC-CCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~l~i~v~d~~ 336 (529)
..+.|.|++++|++|.++|..|.+|||+++++.+.+ ..+++|+++++++||.|||+|.|.+... ....|.++|||+|
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 358899999999999999999999999999997543 3578999999999999999999998654 2457999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
..++|++||++.+++.++.... .+.|+.|...
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccccccccccccchhhhccCC-cccceeeccc
Confidence 9999999999999999987654 4889998653
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=103.11 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=84.6
Q ss_pred ccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 420 ALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 420 ~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+.+++++++++ ...++||++++ .+.||+|||.|+|++..+ .++.|+|+|+|++++++ .+||++.++|.++.
T Consensus 35 g~~Dp~akv~F-----Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv 109 (144)
T 3l9b_A 35 GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVV 109 (144)
T ss_dssp SCEEEEEEEEE-----TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHH
T ss_pred CCCCCeEEEEE-----eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhc
Confidence 46779999886 56789999998 599999999999999644 67899999999999877 79999999999999
Q ss_pred ccceeeeEEEcCCC----CccEEEEEEEEEeCC
Q 009664 496 LEGEYTDCFELDGT----KSGKLKLHLKWMPQP 524 (529)
Q Consensus 496 ~~~~~~~w~~L~~~----~~G~i~l~~~~~~~~ 524 (529)
..+...-+-+|.+. -.+.|.+++.|.|-+
T Consensus 110 ~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 110 EENRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp HHSEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred cCCeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence 88887666777542 248999999999853
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-12 Score=131.96 Aligned_cols=100 Identities=21% Similarity=0.395 Sum_probs=87.4
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+.+++ +..+++|+++++|.||+|||.|.|.+.++....|.|+|||++.+++ ++||++.++|+++.
T Consensus 403 d~~~~sdpyv~v~~-----~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~ 477 (510)
T 3jzy_A 403 KPNGKSNPYCEISM-----GSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIR 477 (510)
T ss_dssp STTSCCCEEEEEEE-----TTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHH
T ss_pred CCCCCCCeEEEEEE-----CCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhc
Confidence 34567889999885 5678999999999999999999999987777899999999999876 89999999999997
Q ss_pred ccce----eeeEEEcCCCCccEEEEEEEEE
Q 009664 496 LEGE----YTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 496 ~~~~----~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
.... ...|++|.+...|+|++++..+
T Consensus 478 ~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 478 TEQESKGPMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp HHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred cccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence 6543 6899999999999999988764
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=101.17 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=59.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.++||+++. . +..||++++ ++.||+|||.|.|.+.+ ....|.|+|||++ .++ ++||++.|+|+++..
T Consensus 20 ~g~~DPYv~v~---~----~~~kt~~~~~~t~nP~WnE~f~f~v~~-~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 20 QEKFNTYVTLK---V----QNVKSTTIAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp GGGCEEEEEEE---E----TTEEEECCCEESSSCEEEEEEEEEECC-CSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCB
T ss_pred CCCcCeEEEEE---e----cCEEEeEecCCCCCceECCEEEEEEeC-CCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhh
Confidence 35677999887 1 234565555 69999999999999986 4557999999999 665 899999999999876
Q ss_pred cce--eeeEEEc
Q 009664 497 EGE--YTDCFEL 506 (529)
Q Consensus 497 ~~~--~~~w~~L 506 (529)
... ..+|+++
T Consensus 91 ~~~~~~~~~~~~ 102 (131)
T 2cjt_A 91 SNEEGPGEWLTL 102 (131)
T ss_dssp CSSCCCCEEEEC
T ss_pred cCCCCccccEEc
Confidence 542 1245544
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=126.26 Aligned_cols=116 Identities=17% Similarity=0.357 Sum_probs=90.3
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--C-CeEeccccCC-CCCCeecc-EEEEE-EecCCCCEEEEEEEEC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--E-KTKKSKTINN-DLNPIWNE-HFEFI-VEDESTQHLVVRIYDD 335 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~-~~~kT~~~~~-t~nP~Wne-~f~~~-v~~~~~~~l~i~v~d~ 335 (529)
..|+|+|++|++|+.. .+||||++.+.+.+ . ++++|+++++ +.||+||| +|.|. +..+....|+|+|||+
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 4899999999999853 68999999997321 1 3578999875 69999999 69998 7655556899999998
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
| +++||++.+||..|..|. .+++|.... ...-..|.|.+.+.+...
T Consensus 801 d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~---g~~l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 801 G----GKFVGHRILPVSAIRSGY---HYVCLRNEA---NQPLCLPALLIYTEASDY 846 (885)
T ss_dssp T----TEEEEEEEEETTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEEC
T ss_pred C----ccEEeeEEEEHHHcCCCc---eEEEecCCC---CCccCceEEEEEEEEEec
Confidence 7 799999999999998763 356775321 112246899999988753
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=125.23 Aligned_cols=116 Identities=19% Similarity=0.298 Sum_probs=88.5
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC---CCeEecc-ccC-CCCCCeecc-EEEE-EEecCCCCEEEEEE
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSK-TIN-NDLNPIWNE-HFEF-IVEDESTQHLVVRI 332 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~-~~~-~t~nP~Wne-~f~~-~v~~~~~~~l~i~v 332 (529)
..|.|.|+|++|++|+. +.+||||++.+.+.+ .+++||+ +++ ++.||+||| +|.| .+..+....|+|.|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 36899999999999984 468999999996321 2367899 775 569999999 6999 78666556899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
||++ +++||++.++|..|..| ..|++|.... ...-..+.|.+.+.+.
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~---g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSES---NMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCE---EEEEEEECTT---CCEEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCC---cEEEeccCCC---CCCCCceEEEEEEEEE
Confidence 9986 79999999999999875 3567775321 1112347777777653
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-10 Score=124.15 Aligned_cols=117 Identities=23% Similarity=0.374 Sum_probs=90.4
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--C--CeEeccccCC-CCCCeeccE-EEEE-EecCCCCEEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--E--KTKKSKTINN-DLNPIWNEH-FEFI-VEDESTQHLVVRIY 333 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~--~~~kT~~~~~-t~nP~Wne~-f~~~-v~~~~~~~l~i~v~ 333 (529)
.+.|+|+|++|++|+.+ .+||||++.+.+.+ . ++++|+++++ +.||+|||+ |.|. +..+....|+|.||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 68999999997321 2 4679999875 699999998 9998 76665568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
|++ +++||++.++|+.|..|- .+++|.... ...-..+.|.+.+.+.-.
T Consensus 725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~---g~~~~~atLfv~i~~~~~ 772 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNES---NRPLGLASVFAHIVAKDY 772 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEEC
T ss_pred ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCC---CCCCCceEEEEEEEEEec
Confidence 985 789999999999998763 457775421 112234788888877643
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-10 Score=117.39 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=77.8
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeec-CCCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
+..+.+|||+++++ +.+++||+++++++||+|||.|.|.+.+ .....|.|+|||+|..++ |+||++.++|..
T Consensus 409 D~~g~sDPYV~v~l-----~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~- 482 (540)
T 3nsj_A 409 DYTTATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS- 482 (540)
T ss_dssp SSCSCCCEEEEEEE-----TTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCCS-
T ss_pred ccCCCcCeEEEEEE-----CCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEeeC-
Confidence 44567889999885 3457999999999999999999998653 467789999999999876 899999999983
Q ss_pred cccceeeeEEEcCCCCccEEEEEEEEE
Q 009664 495 ILEGEYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 495 ~~~~~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
+....|++|+. |.|+++++.+
T Consensus 483 ---g~~~~~~~l~~---G~l~~~~~~~ 503 (540)
T 3nsj_A 483 ---GFHEVTCELNH---GRVKFSYHAK 503 (540)
T ss_dssp ---EEEEEEEECSS---SEEEEEEEEE
T ss_pred ---CcEEEEEEcCC---eEEEEEEEEE
Confidence 45678999874 8999888765
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=100.17 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=57.0
Q ss_pred cccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.++||+++. . +.+||++++ ++.||+|||.|.|.+.+. ...|.|+|||++ +++ ++||++.|+|+++..
T Consensus 29 ~g~~DPYV~v~---~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 29 QEKFNTYVTLK---V----QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp GGGCEEEEEEE---E----TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred CCCCCeEEEEE---e----cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence 35677999887 1 235676665 699999999999999864 457999999999 654 899999999999876
Q ss_pred cc
Q 009664 497 EG 498 (529)
Q Consensus 497 ~~ 498 (529)
..
T Consensus 100 ~~ 101 (167)
T 2cjs_A 100 SN 101 (167)
T ss_dssp CS
T ss_pred cC
Confidence 54
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-09 Score=86.70 Aligned_cols=113 Identities=12% Similarity=0.215 Sum_probs=84.0
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC-CCeEec-cccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT-~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
.+.|||...++.--+-+......||||.+.+.... ....+| ..+++|..|+|||+|.-.+.+ .+.|.+.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence 46788888666532212223468999999986211 112244 667889999999999988876 4689999997543
Q ss_pred CCCceeEEEEEECcccC-----CCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
++++.|++++.+|. .+...+.|+.|. +.|+|++.+.|+
T Consensus 82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe----------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMSVQYF 124 (126)
T ss_dssp ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEE
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEecc----------cCcEEEEEEEEe
Confidence 89999999999986 456779999984 479999999986
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=116.60 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=80.8
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCC-CCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
.+.++||++|.+........++||++++++ .||+|||.|+|.+..+....|.|+|||++..++ ++||++.++|+++..
T Consensus 517 ~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~ 596 (624)
T 1djx_A 517 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596 (624)
T ss_dssp SSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCC
T ss_pred cCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCC
Confidence 467889999987544344568899999997 999999999999987766899999999998865 899999999999854
Q ss_pred cceeeeEEEcCCC-----CccEEEEEEEEE
Q 009664 497 EGEYTDCFELDGT-----KSGKLKLHLKWM 521 (529)
Q Consensus 497 ~~~~~~w~~L~~~-----~~G~i~l~~~~~ 521 (529)
. .+|++|.+. ..+.|.+.+.++
T Consensus 597 G---~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 597 G---YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp E---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred C---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 3 468999653 246677777664
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-10 Score=121.49 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=78.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||+++++.. ....++||++++++.||+|||.|+|.+.+.....|.|+|||++.+++++||++.++|.++....
T Consensus 39 ~g~sDPYV~V~l~~--~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~ 116 (749)
T 1cjy_A 39 LDTPDPYVELFIST--TPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGE 116 (749)
T ss_dssp HCCCCEEEEEECTT--STTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTC
T ss_pred CCCcCeEEEEEEec--CCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCC
Confidence 35678999887521 1246789999999999999999999998777789999999999988779999999999997777
Q ss_pred eeeeEEEcCCCCccEEEE
Q 009664 499 EYTDCFELDGTKSGKLKL 516 (529)
Q Consensus 499 ~~~~w~~L~~~~~G~i~l 516 (529)
...+|++|.+. +++.+
T Consensus 117 ~~~~w~~L~~~--~e~~l 132 (749)
T 1cjy_A 117 KKEVPFIFNQV--TEMVL 132 (749)
T ss_dssp CCCEEEEETTT--EEEEE
T ss_pred ceEEEEecCCC--ceEee
Confidence 77999999975 44444
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-09 Score=86.80 Aligned_cols=114 Identities=16% Similarity=0.295 Sum_probs=84.5
Q ss_pred cceEEEEEEEEecCCCccC-CCCCCCcEEEEEEecCC-CCeEec-cccCCCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 260 PVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~-~~~~kT-~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
..+.|||...++.--+-+. .....||||.+.+...- ....+| ..+++|..|+|||+|.-.+.+ .+.|.|.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 3467888887766433221 12358999999987210 012455 555779999999999888866 468999999644
Q ss_pred CCCCCceeEEEEEECcccC-----CCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
. +++..|++++.+|. .+...+.|+.|. +.|+|++.+.|+
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe----------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLELK----------PQGRMLMNARYF 129 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECB----------SSCEEEEEEEEC
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEecc----------cCcEEEEEEEEE
Confidence 3 89999999999996 456679999984 579999999996
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-10 Score=121.48 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=18.5
Q ss_pred CCceEEEEEEEccCCeeEeeecccCC---CCCccCceEEEEeecCCCCEEEEEEEEC-C---CCC-CCeeEEEEEecccc
Q 009664 423 SGANGTEAIELEKDASQKRREVVNDC---LNPIWNQTFDFVVEDGLHDMLIAEVWDH-D---TFG-KDYMGRCILTLTRV 494 (529)
Q Consensus 423 ~~~l~v~~~~~~~~~~~~kT~v~~~t---~nP~wne~f~f~v~~~~~~~L~i~V~D~-~---~~~-~d~lG~~~i~L~~l 494 (529)
++|+++++ .+..+.||+++++| .||+|||.|+|.+... ...|.|+|||+ + ..+ +++||++.|+++++
T Consensus 28 dpYv~v~l----~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l 102 (483)
T 3bxj_A 28 RYYCELCL----DDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102 (483)
T ss_dssp -----------------------------------CCEECC---------------------------------------
T ss_pred CCeEEEEE----CCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCccccCCCCceEEEEEEEHHHh
Confidence 68888775 23345699999999 9999999999986433 47899999994 4 234 48999999999999
Q ss_pred cccceeeeEEEcCCC---------------------------CccEEEEEEEEEeCC
Q 009664 495 ILEGEYTDCFELDGT---------------------------KSGKLKLHLKWMPQP 524 (529)
Q Consensus 495 ~~~~~~~~w~~L~~~---------------------------~~G~i~l~~~~~~~~ 524 (529)
......++||+|.+. ..|.|+|++.|++..
T Consensus 103 ~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 103 AGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp ----CCEECC--------------------------------------CEEEEEECC
T ss_pred cCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 877677999999531 248999999998753
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=118.69 Aligned_cols=95 Identities=24% Similarity=0.447 Sum_probs=79.9
Q ss_pred cCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEeccc
Q 009664 416 NGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTR 493 (529)
Q Consensus 416 ~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~ 493 (529)
.+..+.++||+++.+........++||+++++|.||.|||.|.|.+... ....|.++|||++..+. ++||++.+++++
T Consensus 187 ~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~ 266 (674)
T 3pfq_A 187 MDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 266 (674)
T ss_dssp CSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTH
T ss_pred CCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhh
Confidence 4556788999999987666667789999999999999999999998754 45679999999999876 899999999999
Q ss_pred ccccceeeeEEEcCCCCc
Q 009664 494 VILEGEYTDCFELDGTKS 511 (529)
Q Consensus 494 l~~~~~~~~w~~L~~~~~ 511 (529)
+...+ ..+||.|.+...
T Consensus 267 l~~~~-~~~w~~Lls~~~ 283 (674)
T 3pfq_A 267 LQKAG-VDGWFKLLSQEE 283 (674)
T ss_dssp HHHCC-EEEEEECBCTTG
T ss_pred hccCC-cccceeeccccc
Confidence 97654 489999976433
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=76.25 Aligned_cols=93 Identities=10% Similarity=0.171 Sum_probs=73.0
Q ss_pred cCCCceEEEEEEEccCCeeEee-ecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc--
Q 009664 421 LKSGANGTEAIELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE-- 497 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT-~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~-- 497 (529)
..+||+.|.+-....+. .-+| ..+++|..|.||++|.-.+.+ ...|+|.|+.... +++..+++++.+|..+
T Consensus 26 ~lDPy~aV~vdE~~~~e-~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~ 99 (126)
T 1yrk_A 26 ANQPFCAVKMKEALSTE-RGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCK 99 (126)
T ss_dssp SCCCEEEEEEEEEEEET-TEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHH
T ss_pred cCCceEEEEeeeeEEcc-cceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhc
Confidence 45699988754333222 2344 677889999999999999885 4689999996554 8999999999999843
Q ss_pred ---ceeeeEEEcCCCCccEEEEEEEEE
Q 009664 498 ---GEYTDCFELDGTKSGKLKLHLKWM 521 (529)
Q Consensus 498 ---~~~~~w~~L~~~~~G~i~l~~~~~ 521 (529)
+..+-|++|+. .|+|++.++|.
T Consensus 100 ~~~g~~e~WvdLeP--~Gkl~~~i~~~ 124 (126)
T 1yrk_A 100 KNNGKAEFWLDLQP--QAKVLMSVQYF 124 (126)
T ss_dssp TTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred cCCCceEEEEeccc--CcEEEEEEEEe
Confidence 45689999998 69999999875
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-07 Score=75.00 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=72.1
Q ss_pred cCCCceEEEEEEEccCCeeEee-ecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccccc--
Q 009664 421 LKSGANGTEAIELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE-- 497 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT-~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~-- 497 (529)
..+||+.|.+-...... .-+| ..+++|..|.||+.|.-.+.+ ...|+|.|++... +++..+++++.+|..+
T Consensus 31 ~lDPY~aV~VdE~~~te-~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck 104 (138)
T 2enj_A 31 AVNPYCAVLVKEYVESE-NGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV---DLISETTVELYSLAERCR 104 (138)
T ss_dssp CCCCEEEEEEEEEEEET-TEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC---SCCEEEEEESHHHHHHHH
T ss_pred cCCceEEEEeeeeeecc-CceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhc
Confidence 45699988753332111 2345 556679999999999988875 5689999995443 8999999999999843
Q ss_pred ---ceeeeEEEcCCCCccEEEEEEEEEe
Q 009664 498 ---GEYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 498 ---~~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
+..+-|++|+. .|+|++.++|.-
T Consensus 105 ~~~g~~e~WvdLeP--~Gkl~v~i~~~~ 130 (138)
T 2enj_A 105 KNNGKTEIWLELKP--QGRMLMNARYFL 130 (138)
T ss_dssp HTTTCEEEEEECBS--SCEEEEEEEECC
T ss_pred cCCCceEEEEeccc--CcEEEEEEEEEE
Confidence 45689999998 699999999964
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=101.16 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=72.7
Q ss_pred cCCCceEEEEEEEccCC-eeEeeecccC-CCCCccCc-eEEEE-eecCCCCEEEEEEEECCCCCCCeeEEEEEecccccc
Q 009664 421 LKSGANGTEAIELEKDA-SQKRREVVND-CLNPIWNQ-TFDFV-VEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL 496 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~-~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~ 496 (529)
..+||++|.+....... .++||+++++ +.||+||| .|+|. |..+....|.|+|||++ +++||++.++|+.|..
T Consensus 741 ~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~ 817 (885)
T 3ohm_B 741 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRS 817 (885)
T ss_dssp CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCC
T ss_pred CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCC
Confidence 46788888864322222 3579999986 59999999 69998 77666778999999997 5899999999999854
Q ss_pred cceeeeEEEcCCC-----CccEEEEEEEEEe
Q 009664 497 EGEYTDCFELDGT-----KSGKLKLHLKWMP 522 (529)
Q Consensus 497 ~~~~~~w~~L~~~-----~~G~i~l~~~~~~ 522 (529)
. .++++|.+. ..|.|.+.+..+.
T Consensus 818 G---yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 818 G---YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp E---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 3 456777643 2467888887774
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-07 Score=99.72 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=70.8
Q ss_pred cCCCceEEEEEEEccC-CeeEeee-cccC-CCCCccCc-eEEE-EeecCCCCEEEEEEEECCCCCCCeeEEEEEeccccc
Q 009664 421 LKSGANGTEAIELEKD-ASQKRRE-VVND-CLNPIWNQ-TFDF-VVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVI 495 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~-~~~~kT~-v~~~-t~nP~wne-~f~f-~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~ 495 (529)
..+||++|.+...... .+++||+ ++++ +.||+||| .|+| .+..+..+.|.|+|||++ +++||++.++|+.+.
T Consensus 694 ~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~ 770 (799)
T 2zkm_X 694 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALN 770 (799)
T ss_dssp CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBC
T ss_pred CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcC
Confidence 5679999987543222 2367999 8775 69999999 6999 887666679999999997 589999999999985
Q ss_pred ccceeeeEEEcCCCC-----ccEEEEEEEEE
Q 009664 496 LEGEYTDCFELDGTK-----SGKLKLHLKWM 521 (529)
Q Consensus 496 ~~~~~~~w~~L~~~~-----~G~i~l~~~~~ 521 (529)
.. .+|++|.+.. .+.+.+.+.++
T Consensus 771 ~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 771 SG---YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp CE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred CC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 43 4677886532 35555666553
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=98.26 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=72.6
Q ss_pred cCCCceEEEEEEEccCC--eeEeeecccC-CCCCccCce-EEEE-eecCCCCEEEEEEEECCCCCCCeeEEEEEeccccc
Q 009664 421 LKSGANGTEAIELEKDA--SQKRREVVND-CLNPIWNQT-FDFV-VEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVI 495 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~--~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~ 495 (529)
..+||++|.+....... +++||+++++ +.||+|||. |+|. |..+..+.|.|+|||++ +++||++.++|+.+.
T Consensus 666 ~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~ 742 (816)
T 3qr0_A 666 QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIK 742 (816)
T ss_dssp CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCC
T ss_pred CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcC
Confidence 46799999875432222 5789999886 599999998 9998 87666689999999985 589999999999986
Q ss_pred ccceeeeEEEcCCCC-----ccEEEEEEEEE
Q 009664 496 LEGEYTDCFELDGTK-----SGKLKLHLKWM 521 (529)
Q Consensus 496 ~~~~~~~w~~L~~~~-----~G~i~l~~~~~ 521 (529)
.. .++++|.+.. .+.|.+.+..+
T Consensus 743 ~G---yR~vpL~~~~g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 743 PG---YRHVPLRNESNRPLGLASVFAHIVAK 770 (816)
T ss_dssp CE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred Cc---ceEEEEeCCCCCCCCceEEEEEEEEE
Confidence 53 4567776532 35666666655
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.56 E-value=2.4 Score=38.18 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=39.4
Q ss_pred eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEECCCCC----CCceeEEEEEEC
Q 009664 298 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ----SSELIGCAQVRL 351 (529)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d~~~~~----~d~~lG~~~i~l 351 (529)
.++|.+...+.+|.|+|++.+.+... ....|.|.+++..... ....+|.+.+||
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL 137 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL 137 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence 57888889999999999999988653 3457999998865321 123566666665
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=90.20 E-value=3.2 Score=35.17 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=83.6
Q ss_pred CcceEEEEEEEEecCCCcc-CCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC-------CCCEEEE
Q 009664 259 KPVGTLEVKLVQAKGLTNK-DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVV 330 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-------~~~~l~i 330 (529)
+..+.+.|+|.++.--+.. ...+..+|+.-+.+.=..-+.+.|.+.. +.+|.+|-+-+|.|.-. .+..+.+
T Consensus 15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l 93 (156)
T 2yrb_A 15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL 93 (156)
T ss_dssp SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence 4678999999998732211 1124467876666653344566777655 88999999888888432 2347889
Q ss_pred EEEECCCCCCCceeEEEEEECcccCCCce-eeEEEEcccccccccCC--ccccEEEEEEEEEE
Q 009664 331 RIYDDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDT--KYRGQVHLELLYCP 390 (529)
Q Consensus 331 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~--~~~G~i~l~l~~~p 390 (529)
+++.... +..+.+|.+.++|.++...+. .....+|... ++ ..-|.|.+.++...
T Consensus 94 ELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~-----~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 94 EVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT-----KGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS-----SSCCTTSEEEEEEEEEEE
T ss_pred EEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC-----CCCcceEEEEEEEEEEec
Confidence 9988754 356789999999999854333 3334455431 23 46799999888863
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=6.3 Score=43.73 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=58.9
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC---CeEeccccCCCCCCeeccEEEEEEe--c-CCCCEEEEEEEE
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYD 334 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~l~i~v~d 334 (529)
...++|+|.++.++... ..++-||.+.+--++. ....|+.+.-..+|.|||...|.+. + +....|.+.+|+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 46899999999998754 3467788776642221 2344554555678999999888864 2 346689999999
Q ss_pred CCCC--C----------CCceeEEEEEECcc
Q 009664 335 DEGI--Q----------SSELIGCAQVRLCE 353 (529)
Q Consensus 335 ~~~~--~----------~d~~lG~~~i~l~~ 353 (529)
.... + .+..+|.+.++|-+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 323 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFD 323 (940)
T ss_dssp EC----------------CEEEEEEEEESBC
T ss_pred ecCCccCccccccccccccceEEEEeeeEEC
Confidence 6321 1 23477888888754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 529 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-26 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-11 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-23 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-21 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-06 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-21 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 0.001 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-09 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 6e-17 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 9e-09 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 4e-16 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-04 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 5e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 9e-16 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-06 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-15 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 9e-08 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-15 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-07 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-14 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 6e-05 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-14 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 0.002 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 6e-14 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-05 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-13 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-06 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-13 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-06 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-10 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 4e-09 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 0.001 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 3e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 9e-05 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 102 bits (256), Expect = 1e-26
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
P GTLEV LV AKGL + D + DPY L R +K+ ++ + P WNE F F
Sbjct: 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMG--TTPEWNETFIF 64
Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLVKDLDVQRDTK 377
V + + L +I+D + + +G A + L + G + +VKD +
Sbjct: 65 TVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE------E 117
Query: 378 YRGQVHLELLYCPFGMEN 395
Y+G++ + L + P G +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 60.1 bits (145), Expect = 1e-11
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 438 SQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVIL 496
QK P WN+TF F V +G ++ +++D D +D +G + L V +
Sbjct: 43 DQKSNVAEGMGTTPEWNETFIFTVSEGTTELKA-KIFDKDVGTEDDAVGEATIPLEPVFV 101
Query: 497 EGEYTDCF---ELDGTKSGKLKLHLKWMPQ 523
EG D G++ + L + P
Sbjct: 102 EGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.7 bits (227), Expect = 7e-23
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 262 GTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 318
V +++A +T D++ DPY LF+ P+ K+++ NND+NP+WNE FEF
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 378
I++ L + + D E +G A + ++ G+ K+V +
Sbjct: 63 ILDPNQENVLEITLM-DANYVMDETLGTATFTVSSMKVGEKKEVPFIF--------NQVT 113
Query: 379 RGQVHLELLYCP 390
+ + L
Sbjct: 114 EMVLEMSLEVAS 125
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (148), Expect = 4e-12
Identities = 16/93 (17%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCIL 489
+ + ++R N+ +NP+WN+TF+F+++ ++L + D + + +G
Sbjct: 33 LFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATF 92
Query: 490 TLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP 522
T++ + + + F + L++ L+
Sbjct: 93 TVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS 125
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 88.3 bits (218), Expect = 2e-21
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 320
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 321 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ + LV+ +YD + ++IG +V + ++ G V + W L
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 4e-06
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 433 LEKDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 489
L + +V LNP++N+ F F V + L+ V+D D F K D +G +
Sbjct: 64 LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
Query: 490 TLTRVILEGEYTDCFELD 507
+ V + +L
Sbjct: 124 PMNTVDFGHVTEEWRDLQ 141
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.5 bits (216), Expect = 2e-21
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 316
++K VG L+VK+++A L D GKSDP+ +L + ++ T+ +LNP WN+ F
Sbjct: 1 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWNKVF 57
Query: 317 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 376
F ++D L V ++D++G + + +G + L + G+ LK +
Sbjct: 58 TFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-----EQ 111
Query: 377 KYRGQVHLEL 386
++G ++LE+
Sbjct: 112 AFKGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 446 NDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCF 504
LNP WN+ F F ++D + + V+D D D++G+ + L + +C+
Sbjct: 46 YKNLNPEWNKVFTFPIKDIHDVLEV-TVFDEDGDKPPDFLGKVAIPLLS--IRDGQPNCY 102
Query: 505 EL-----DGTKSGKLKLHLKWM 521
L + G + L + +
Sbjct: 103 VLKNKDLEQAFKGVIYLEMDLI 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.8 bits (204), Expect = 1e-19
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF- 318
L V + AK L D G SDPY L + P P E +K+KTI LNP WNE F F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 319 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
+ E + + L V I+D + ++ +G + EL+ V D W KL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 121
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.9 bits (129), Expect = 2e-09
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 431 IELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHDTFGK-DYMGRCI 488
I K S+++ + + LNP WN+TF F +++ D L E+WD D + D+MG
Sbjct: 45 IPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLS 104
Query: 489 LTLTRVILEGEYTDCFELDGTKSGK 513
++ + G F+L + G+
Sbjct: 105 FGISELQKAGV-DGWFKLLSQEEGE 128
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (183), Expect = 6e-17
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK--KSKTINNDLNPIWNEHFEFI 319
L V ++ AK L +++ +PY ++ P ++KT+ L P WN+ F +
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 320 V---EDESTQHLVVRIYDDEGIQSS--ELIGCAQVRLCELEPGKVKDVWLKL 366
+ + L + ++D ++ E +G + L W KL
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 9e-09
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK---DYMGRCI 488
D +++R + V L P WNQTF + + ML +WD + +++G +
Sbjct: 48 SDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 107
Query: 489 LTLTRVILEGE 499
+ L +L+ E
Sbjct: 108 IELETALLDDE 118
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.0 bits (178), Expect = 4e-16
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-----------KKSKTINNDLNP 310
G L + ++QA+ L +D G SDP+ +++ P + +++K + LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 311 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
WN+ + E + L V ++D + S++ +G + L W L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHD 477
L G ++ ++R + V LNP WNQT + E + L VWD+D
Sbjct: 47 LLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYD 106
Query: 478 TFGK-DYMGRCILTLTRVILEGEYTDCFEL 506
F D++G ++ L+ + L
Sbjct: 107 RFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (177), Expect = 5e-16
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 321
L++ ++ AK NK PY + V ++KK++ NN +P W + IV
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVT 62
Query: 322 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDTKY 378
L R++ + ++S L+G A + + E K+++V + L + + T+
Sbjct: 63 P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL-QLGGDKEPTET 119
Query: 379 RGQVHLEL 386
G + + L
Sbjct: 120 IGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 3e-04
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 436 DASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRV 494
D K+ E N+ +P W Q +V VW H T D +G L +
Sbjct: 36 DGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHF--RVWSHQTLKSDVLLGTAALDIYET 93
Query: 495 ILE 497
+
Sbjct: 94 LKS 96
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.1 bits (176), Expect = 9e-16
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
TL V +++A+ L D+ G SDPY + + ++ K KT N ++NE F F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
+ ES + + + D E +E+IG + G W ++
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 123
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 491
K S+K+ V N ++N+ F F + E + V D + + + +GR +L
Sbjct: 49 KRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 108
Query: 492 TRV 494
T
Sbjct: 109 TAE 111
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.3 bits (174), Expect = 1e-15
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 259 KPVGTLEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWN 313
+P L V+++ + L NK+ DP ++ + + T +T NN NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 314 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
FEF V + + D + ++ IG + + L+ G + L
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHL 110
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.0 bits (116), Expect = 9e-08
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY-MGRCILTLTR 493
S++ + N+ NP W+ F+F V ++ V D+D+ K+ +G+ +
Sbjct: 41 DTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 100
Query: 494 VILEGEYTDCFELDGTKSGKLKLHLK 519
+ + +G + L +K
Sbjct: 101 LKQGYRHVHLLSKNGDQHPSATLFVK 126
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 2e-15
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 320
V + +A+GL D SDPY + + P + K++ + L+P ++E F F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 321 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 368
L I + ++IG + L +E + K + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 4e-07
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 431 IELEKDASQKRR-EVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGKD-YMG 485
+ + + K + V+ L+P +++TF F L + D F +D +G
Sbjct: 50 MTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIG 109
Query: 486 RCILTLTRVIL-EGEYTDCFELDGTKS 511
++ L+ + L EG+ E+ S
Sbjct: 110 EVLIPLSGIELSEGKMLMNREIISGPS 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.3 bits (166), Expect = 2e-14
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 319
G L V +++ L D G SDP+ L+++P K K ++ LNP +NE F +
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
+ D + + L + ++D + +S++ IG Q+ + G+ W + +K+ D
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 126
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 6e-05
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 489
++ + ++ LNP +N+ F + + D L VWD+D DY+G C L
Sbjct: 49 GKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 106
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 5e-14
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 320
L V ++A + G D Y V + ++ L+ W E +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 321 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 366
E+ T L + + + + G ++ L W +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.002
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 5/84 (5%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG---KDYMGRCILT 490
+ + + + L+ W + + + + G L
Sbjct: 55 RTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLG 114
Query: 491 LTRVILEGEYTDCFELD--GTKSG 512
L + EL G SG
Sbjct: 115 LDGTSVPLGAAQWGELKTSGPSSG 138
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.8 bits (162), Expect = 6e-14
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 319
G L V +++A L DL G SDPY + + KK KT N LNP +NE F
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 320 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368
V E L + + D + I +E+IG +V +P ++ W +++
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 7e-05
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 434 EKDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILT 490
+ +++ + + LNP +N+ F V E + L V D+D G + +G C +
Sbjct: 53 GRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVG 112
Query: 491 LTRVILEG 498
G
Sbjct: 113 PEAADPHG 120
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 65.7 bits (159), Expect = 1e-13
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 27/142 (19%)
Query: 262 GTLEVKLVQAKGLTNKDL-----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 310
G L++K+ +A L DPY L V + ++ T +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63
Query: 311 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVK 368
W++ F V + L V G + + ++ EL + + W+ L
Sbjct: 64 AWHDEFVTDVCNGRKIELAVFHDAPIGYD--DFVANCTIQFEELLQNGSRHFEDWIDLEP 121
Query: 369 DLDVQRDTKYRGQVHLELLYCP 390
G+V++ +
Sbjct: 122 ----------EGKVYVIIDLSG 133
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 46.0 bits (108), Expect = 1e-06
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTR 493
D+ + +P W+ F V +G L V+ G D++ C +
Sbjct: 47 DDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIEL--AVFHDAPIGYDDFVANCTIQFEE 104
Query: 494 VILEGEYTDCFELDGTKSGKLKLHLKWMP 522
++ G +D GK+ + +
Sbjct: 105 LLQNGSRHFEDWIDLEPEGKVYVIIDLSG 133
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.0 bits (160), Expect = 2e-13
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 319
G L V +++AK L D+ G SDPY + + ++ KK+ N LNP +NE F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 371
V E Q +VV + D + I ++ IG V W ++ +
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE--LRHWSDMLANPR 136
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.0 bits (108), Expect = 2e-06
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 491
K +K+ + + LNP +N++F F V E ++ V D+D GK D +G+ +
Sbjct: 59 KRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118
Query: 492 TRVILEGE 499
E
Sbjct: 119 NSTGAELR 126
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.7 bits (136), Expect = 2e-10
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 264 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 323
L V + +AK ++ K + Y L V+ K + P W + F F +
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVKSTTIAVRGSQPSWEQDFMFEINRL 56
Query: 324 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVKDLDVQRDTKYRGQ 381
L V ++ ++G+ ++G + L + + WL L + D++ G
Sbjct: 57 -DLGLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT 113
Query: 382 V 382
Sbjct: 114 K 114
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (126), Expect = 4e-09
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-----INNDLNPIWNEH-- 315
TL + ++ + L+ + Y + + LP K+ N +NP+W E
Sbjct: 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57
Query: 316 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 357
+ L V + ++ + +G + + L G
Sbjct: 58 VFEKILMPELASLRVAVMEEGN----KFLGHRIIPINALNSG 95
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (86), Expect = 0.001
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 429 EAIELEKDASQKRRE---VVNDCLNPIWNQT--FDFVVEDGLHDMLIAEVWDHDTFGKDY 483
E L D ++ R + +NP+W + + L V + +
Sbjct: 25 ELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKF 81
Query: 484 MGRCILTLT-------RVILEGEYTDCFEL 506
+G I+ + + L E +
Sbjct: 82 LGHRIIPINALNSGYHHLCLHSESNMPLTM 111
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 3e-05
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 435 KDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 494
K + P W TFD + +G ++ D + +G +L
Sbjct: 37 TTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCK 96
Query: 495 ILEGEYTDCFELDGTKSGKLKLHLKWMPQ 523
G+ +L K+ + +++ +
Sbjct: 97 KNNGKAEFWLDLQ--PQAKVLMCVQYFLE 123
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (93), Expect = 9e-05
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 440 KRREVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496
+ +V LNPI+N+TF F V + L V+D D F + D +G+ +L +
Sbjct: 55 FQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELA 114
Query: 497 EGEYTDCFELDGTKSG 512
E D + G
Sbjct: 115 EQPPDRPLWRDILEGG 130
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.88 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.87 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.85 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.81 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.8 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.78 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.78 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.77 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.75 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.74 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.71 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.7 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.67 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.67 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.66 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.65 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.64 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.59 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.58 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.57 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.53 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.53 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.52 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.51 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.51 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.5 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.5 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.5 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.48 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.47 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.41 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.38 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.36 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.36 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.35 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.3 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 98.8 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 88.03 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 87.27 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-22 Score=171.10 Aligned_cols=122 Identities=29% Similarity=0.548 Sum_probs=106.9
Q ss_pred CcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCC
Q 009664 259 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 338 (529)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~ 338 (529)
++.|.|+|+|++|++|+.++..|.+||||+++++ +++++|++++++.||.|||+|.|.+.++. +.|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCTT-CEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC---CeEEEEEeeCCceeEEEEEEEEEEEeccC-ceeEEEEEEccCC
Confidence 6789999999999999999999999999999997 67899999999999999999999998764 6899999999998
Q ss_pred CCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEE
Q 009664 339 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 389 (529)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~ 389 (529)
++|++||++.++|.++..+. ..|+.|... ...++.+|+|++++.|.
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK---DLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSC--CEECCCBCS---CTTSCCSSEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCC--ceEEEcccc---CCCCceeEEEEEEEEEE
Confidence 89999999999999997664 468777532 22456779999999886
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=3.8e-22 Score=170.60 Aligned_cols=125 Identities=34% Similarity=0.575 Sum_probs=108.6
Q ss_pred cCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccC-CCCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 258 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
..|.|+|+|+|++|++|+.++..|++||||+++++ ++.++|++++ ++.||.|||+|.|.+.+.. ..|.|+|||++
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~-~~L~v~V~d~d 81 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSEGT-TELKAKIFDKD 81 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEESSC-CEEEEEECCSS
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe---eeeEEEEEEecCCCcEEEeeEEEEEEcCcc-ceEEEEEEEec
Confidence 36889999999999999999999999999999986 5677888876 6899999999999998754 57999999999
Q ss_pred CCCCCceeEEEEEECcccC-CCceeeEEEEcccccccccCCccccEEEEEEEEEEcc
Q 009664 337 GIQSSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 392 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~~ 392 (529)
.+++|++||++.++|.++. .+.....|+.+.. +++.+|+|++++.|.|..
T Consensus 82 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~------~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 82 VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECC
T ss_pred CCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC------CCccCEEEEEEEEEEeCC
Confidence 9999999999999999874 4555678998853 456789999999999864
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.3e-21 Score=163.48 Aligned_cols=121 Identities=26% Similarity=0.518 Sum_probs=106.3
Q ss_pred ceEEEEEEEEecCCCcc---CCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCC
Q 009664 261 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 337 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~ 337 (529)
.+.|+|+|++|+||+.. |..|.+||||++++++...++++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 46899999999999874 456899999999998655678999999999999999999999988777789999999986
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
. +|++||++.++|+++..+...+.|++|. ....|+|++++.++|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~--------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN--------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET--------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc--------CCCeEEEEEEEEEEe
Confidence 5 6899999999999999999999999994 345699999998865
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.81 E-value=2e-19 Score=153.05 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=100.4
Q ss_pred cceEEEEEEEEecCCCccC-----------CCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEE
Q 009664 260 PVGTLEVKLVQAKGLTNKD-----------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL 328 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l 328 (529)
-.|.|+|+|++|++|++.+ ..+.+||||+++++ +....+|+++.++.||.|||+|.|.+.+. +.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~~--~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEecC--Cce
Confidence 3699999999999998753 35678999999996 22456899999999999999999999764 589
Q ss_pred EEEEEECCCCCCCceeEEEEEECcccCCC--ceeeEEEEcccccccccCCccccEEEEEEEEEEc
Q 009664 329 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 391 (529)
Q Consensus 329 ~i~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p~ 391 (529)
.|+|||++.+++|++||++.++|+++..+ ...+.|++|. +.|++++.+.+.|.
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC----------CCcEEEEEEEEEeC
Confidence 99999999999999999999999998543 4567899984 35999999999875
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=1.8e-19 Score=155.09 Aligned_cols=111 Identities=31% Similarity=0.479 Sum_probs=100.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+....+.|+|+|++|+||+.++..|.+||||++++.+.+.+.++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 3456789999999999999999899999999999987767789999999999999999999987543 45689999999
Q ss_pred CCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 335 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
++.++++++||++.++|.++..+...++|++|+
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 999999999999999999998888889999985
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=5.2e-19 Score=149.95 Aligned_cols=107 Identities=36% Similarity=0.561 Sum_probs=93.8
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecCC-CCEEEEEEEECCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG 337 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~l~i~v~d~~~ 337 (529)
.+.|+|+|++|+||+.+|..|.+||||++++.+.. ..+++|+++++|.||.|||+|.|.+.... .+.|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 57999999999999999999999999999996432 35789999999999999999999986542 4579999999999
Q ss_pred CCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 338 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
+++|++||++.++|.++..+. .+.|++|..
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence 999999999999999987654 578999964
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.5e-19 Score=148.16 Aligned_cols=122 Identities=25% Similarity=0.353 Sum_probs=98.2
Q ss_pred ceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 261 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
.+.|.|+|++|+++..++..+.+||||++.++ ++.++|++++++.||.|||.|.|.+.+ .+.|.|+|||++.+++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~ 79 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS 79 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC---CeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence 37899999999999998888899999999997 678999999999999999999999865 3589999999999999
Q ss_pred CceeEEEEEECcccC---CCceeeE--EEEcccccccccCCccccEEEEEEEEEE
Q 009664 341 SELIGCAQVRLCELE---PGKVKDV--WLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 341 d~~lG~~~i~l~~l~---~~~~~~~--~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
|++||++.++|.++. .+..... |+.+... .......|+|.+.+.+..
T Consensus 80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~---~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESEE
T ss_pred CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC---CCCceEEEEEEEEEeeEE
Confidence 999999999999873 2333333 4444321 234567799999887764
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=5.3e-19 Score=149.37 Aligned_cols=112 Identities=29% Similarity=0.447 Sum_probs=95.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 334 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~d 334 (529)
+....+.|+|+|++|+||+.++..|.+||||++++.+.+.++++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d 92 (130)
T d1dqva1 13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 92 (130)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence 4467899999999999999999999999999999987666789999999999999999999998543 35679999999
Q ss_pred CCCCCCCceeEEEEEECcc-cC-CCceeeEEEEccc
Q 009664 335 DEGIQSSELIGCAQVRLCE-LE-PGKVKDVWLKLVK 368 (529)
Q Consensus 335 ~~~~~~d~~lG~~~i~l~~-l~-~~~~~~~~~~L~~ 368 (529)
++.+++|++||++.+++.. +. .......|++|.+
T Consensus 93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred cCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 9999999999999998644 32 2334567999864
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=8.8e-18 Score=141.91 Aligned_cols=121 Identities=18% Similarity=0.333 Sum_probs=92.4
Q ss_pred eEEEEEEEEecCCCc--cCCCCCCCcEEEEEEecC--CCCeEeccccCC-CCCCeeccEEEEEEecCCCCEEEEEEEECC
Q 009664 262 GTLEVKLVQAKGLTN--KDLIGKSDPYAVLFVRPL--PEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDE 336 (529)
Q Consensus 262 g~L~V~v~~a~~L~~--~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~ 336 (529)
..|+|+|++|++|+. .+..+++||||++++.+. +.++++|+++++ ++||.|||+|.|.+..+....|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 479999999999975 455678999999999632 345788888754 579999999999987776678999999999
Q ss_pred CCCCCceeEEEEEECcccCCCceeeEEEEcccccccccCCccccEEEEEEEE
Q 009664 337 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 388 (529)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~ 388 (529)
..++|++||++.++|+.+.++ ..|++|.... ...-..++|.+.+.+
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~---g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---GDQHPSATLFVKISI 129 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT---SCEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC---cCCCCCCEEEEEEEE
Confidence 999999999999999999765 3588885321 112235677777765
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=6.2e-19 Score=151.60 Aligned_cols=110 Identities=23% Similarity=0.447 Sum_probs=94.3
Q ss_pred cceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC-----------eEeccccCCCCCCeeccEEEEEEe---cCCC
Q 009664 260 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK-----------TKKSKTINNDLNPIWNEHFEFIVE---DEST 325 (529)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~-----------~~kT~~~~~t~nP~Wne~f~~~v~---~~~~ 325 (529)
..|.|.|+|++|+||+.+|..|.+||||++++.+.... +++|++++++.||.|||+|.|... +...
T Consensus 16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~ 95 (142)
T d1rh8a_ 16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK 95 (142)
T ss_dssp ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCC
Confidence 35899999999999999999999999999999643322 357999999999999999999732 2245
Q ss_pred CEEEEEEEECCCCCCCceeEEEEEECcccCCCceeeEEEEcccc
Q 009664 326 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 369 (529)
Q Consensus 326 ~~l~i~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 369 (529)
..|.|+|||++.+++|++||++.++|.++..+.....|++|.+.
T Consensus 96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 68999999999999999999999999999877778899999753
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=3.3e-17 Score=136.77 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=91.9
Q ss_pred eEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCCC
Q 009664 262 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 341 (529)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~d 341 (529)
+.|.|+|.+|++|.++| +.||||++.++ +.+.+|++++ +.||.|||+|.|.+.++. +.|.|+|||++.. +|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~---~~k~~T~~~k-~~nP~Wne~f~f~v~~~~-~~L~v~V~d~~~~-~d 72 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ---NVKSTTIAVR-GSQPSWEQDFMFEINRLD-LGLTVEVWNKGLI-WD 72 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEET---TEEEECCCEE-SSSCEEEEEEEEEECCCS-SEEEEEEEECCSS-CE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeC---CEEEEEEEec-CCCCeEEEEEEEeecccc-ceEEEEEEeCCCc-CC
Confidence 68999999999999876 68999999997 6778888876 559999999999998774 6899999999876 68
Q ss_pred ceeEEEEEECcccCC--CceeeEEEEccccccccc------CCccccEEEEEEEE
Q 009664 342 ELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQR------DTKYRGQVHLELLY 388 (529)
Q Consensus 342 ~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~------~~~~~G~i~l~l~~ 388 (529)
++||++.++|+++.. ......|++|........ ......+|+++++|
T Consensus 73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 999999999999853 334568999965432110 11234567777766
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.6e-17 Score=140.29 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=93.8
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC-CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 333 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v~ 333 (529)
+....+.|.|+|++|++|.. .|.+||||++++.+..+ ..++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 34567899999999999953 46799999999986433 357899999999999999999998543 4568999999
Q ss_pred ECCCCCCCceeEEEEEECcccCCCceeeEEEEccc
Q 009664 334 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 368 (529)
Q Consensus 334 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 368 (529)
|++.++++++||++.|+|.++..+...+.|+.|.+
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999999999999999987777899999965
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.2e-17 Score=137.51 Aligned_cols=110 Identities=20% Similarity=0.277 Sum_probs=90.9
Q ss_pred ccCcceEEEEEEEEecCCCccCCCC-CCCcEEEEEEecCCCCeEeccccCCCCCCeeccEEEEEEecC---CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g-~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~l~i~v 332 (529)
+....+.|+|+|++|+||+.++..+ .+||||++++.+.+.+.++|++++++.||.|||+|.|..... ....|+|+|
T Consensus 17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V 96 (138)
T d1ugka_ 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence 4456789999999999999988665 479999999987777789999999999999999999973222 245899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCc-eeeEEEEc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGK-VKDVWLKL 366 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 366 (529)
||++.+++|++||++.++|+++...+ ....|..+
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 99999999999999999999985433 34455554
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.3e-17 Score=136.54 Aligned_cols=110 Identities=24% Similarity=0.408 Sum_probs=87.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEE-EecC--CCCEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVR 331 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~-v~~~--~~~~l~i~ 331 (529)
+....+.|+|+|++|+||+.++..+.+||||++++.+... .+++|++++++.||.|||+|.|. +... ....|.|+
T Consensus 9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~ 88 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 88 (125)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence 3456789999999999999999889999999999975433 46899999999999999999996 4322 34589999
Q ss_pred EEECCCC--CCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 332 IYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 332 v~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|||++.. +++++||++.++|+++..... .+||+|+
T Consensus 89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9999875 346699999999999865543 5799983
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.9e-16 Score=137.99 Aligned_cols=112 Identities=30% Similarity=0.443 Sum_probs=93.9
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|.|+|++|+||+..+..+.+||||++++.+.+.+ .++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v 99 (157)
T d1uowa_ 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (157)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence 44667999999999999999998899999999999865433 46899999999999999999998654 345899999
Q ss_pred EECCCCCCCceeEEEEEECccc------------CCCceeeEEEEccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK 368 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~ 368 (529)
||++.++++++||++.+++... .++.....|+.|.+
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred cccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 9999999999999999999653 23445578888864
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.4e-16 Score=135.78 Aligned_cols=98 Identities=24% Similarity=0.296 Sum_probs=78.7
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCC--CeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|.|+|++|+||+.++..+.+||||++++.+.+. .+++|++++++.||.|||+|.|.+... ....|.|.|
T Consensus 10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v 89 (138)
T d1w15a_ 10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 89 (138)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence 4466789999999999999999889999999999975443 356899999999999999999987543 345799999
Q ss_pred EECCCCCCCceeEEEEEECccc
Q 009664 333 YDDEGIQSSELIGCAQVRLCEL 354 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l 354 (529)
||++.++++++||++.+++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 90 LDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EECCTTSCCEEEEEEEESTTCC
T ss_pred EeCCCCCCCCEEEEEEEcchhC
Confidence 9999999999999999998753
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=3e-16 Score=133.63 Aligned_cols=109 Identities=23% Similarity=0.391 Sum_probs=90.0
Q ss_pred ccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecC--CCCEEEEEE
Q 009664 257 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 332 (529)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~l~i~v 332 (529)
+.+..|.|+|+|++|+||+.++..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|.|
T Consensus 10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 346779999999999999999888999999999997533 3467899999999999999999998643 355899999
Q ss_pred EECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 333 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 333 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
||++..+++++||++.+++.++. ...++|+.|.
T Consensus 90 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~ 122 (137)
T d2cm5a1 90 WDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECL 122 (137)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHH
T ss_pred eeCCCCCCCCEEEEEEeCccccC--cchhhhhhHh
Confidence 99999999999999999997642 2234566554
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.7e-16 Score=133.14 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=88.5
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG 498 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~ 498 (529)
.+.++||+++.+ .....+++||++++++.||.|||.|+|.+.++....|.|+|||++..++++||++.++|+++..+.
T Consensus 24 ~~~~Dpyv~v~l--~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~ 101 (126)
T d1rlwa_ 24 LDTPDPYVELFI--STTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGE 101 (126)
T ss_dssp HCCCCEEEEEEC--TTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTC
T ss_pred CCCCCcEEEEEE--CCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCCCCCeEEEEEEEHHHccCCC
Confidence 356789998875 222346789999999999999999999998888889999999999877789999999999998777
Q ss_pred eeeeEEEcCCCCccEEEEEEEEEe
Q 009664 499 EYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 499 ~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
....||+|++..+|+|++++++.|
T Consensus 102 ~~~~~~~L~~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 102 KKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEETTTEEEEEEEEEECCC
T ss_pred eEEEEEEccCCCeEEEEEEEEEEe
Confidence 789999999988999999998765
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=6.5e-16 Score=128.17 Aligned_cols=110 Identities=13% Similarity=0.248 Sum_probs=87.0
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEecCC--CCeEeccccCCCCCCeeccEEEEEEecCCCCEEEEEEEECCCCCC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 340 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~l~i~v~d~~~~~~ 340 (529)
.+.|.+..+..++ ...+.+||||++++.+.. .+.++|+++++|+||+|||+|+|.+.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 3444445555544 446889999999997432 234678889999999999999999976 358999999976
Q ss_pred CceeEEEEEECccc-----CCCceeeEEEEcccccccccCCccccEEEEEEEEEE
Q 009664 341 SELIGCAQVRLCEL-----EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 390 (529)
Q Consensus 341 d~~lG~~~i~l~~l-----~~~~~~~~~~~L~~~~~~~~~~~~~G~i~l~l~~~p 390 (529)
++++|.+.+++.++ ..+...+.|++|. ++|+|++++.|++
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeCC----------CCEEEEEEEEEec
Confidence 68999999999987 3567789999983 4699999999984
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=5e-17 Score=137.49 Aligned_cols=123 Identities=20% Similarity=0.368 Sum_probs=94.3
Q ss_pred cccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCc
Q 009664 378 YRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQ 455 (529)
Q Consensus 378 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne 455 (529)
.+|+|++++.|.. ..+.+...+ .+...+..+.++||+++++.....+..++||+++++|.||+|||
T Consensus 2 ~rG~i~l~~~~~~------------~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne 69 (132)
T d1a25a_ 2 RRGRIYIQAHIDR------------EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 69 (132)
T ss_dssp TTCEEEEEEEESS------------SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEE
T ss_pred cccEEEEEEEecC------------CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccce
Confidence 4788888877731 112222222 22334556678999999987777777889999999999999999
Q ss_pred eEEEEeecC-CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCccE
Q 009664 456 TFDFVVEDG-LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 513 (529)
Q Consensus 456 ~f~f~v~~~-~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 513 (529)
.|.|.+.+. ....|.|+|||++.+++ ++||++.|+|+++... ..++||+|.+...|+
T Consensus 70 ~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~ge 128 (132)
T d1a25a_ 70 TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGE 128 (132)
T ss_dssp EEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHT
T ss_pred EEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCCc
Confidence 999999754 45689999999999876 7999999999998644 468999998765553
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=1.1e-16 Score=137.68 Aligned_cols=111 Identities=28% Similarity=0.439 Sum_probs=90.7
Q ss_pred cccCcceEEEEEEEEecCCCccCCCCCCCcEEEEEEecCCCC--eEeccccCCCCCCeeccEEEEEEec--CCCCEEEEE
Q 009664 256 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR 331 (529)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~l~i~ 331 (529)
.+....|.|+|+|++|+||+..+..+.+||||++++.+.+.. +++|++++++.||.|||+|.|.+.. .....|.|.
T Consensus 14 ~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~ 93 (145)
T d1dqva2 14 CYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 93 (145)
T ss_dssp EEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred EEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEE
Confidence 345677999999999999999988899999999999854433 5789999999999999999998753 234579999
Q ss_pred EEECCCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 332 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 332 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
|||++..+++++||++.+++..+.. ....+|+.|.
T Consensus 94 v~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~ 128 (145)
T d1dqva2 94 VVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEML 128 (145)
T ss_dssp EEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSS
T ss_pred EEecCCCCCCcEEEEEEECchHcCc-hhhHHHHHHH
Confidence 9999999999999999999987532 2234566654
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.7e-15 Score=129.81 Aligned_cols=123 Identities=17% Similarity=0.234 Sum_probs=93.3
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCc
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~ 452 (529)
.....|+|++++.|.+.. ..+.+..++ .+...+..+.+++|+++++.. .+.+++||++++++.||.
T Consensus 16 ~~~~~G~l~~sl~y~~~~----------~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~--~~~~~~kT~~~~~t~~P~ 83 (143)
T d1rsya_ 16 EEEKLGKLQYSLDYDFQN----------NQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKKKFETKVHRKTLNPV 83 (143)
T ss_dssp --CCCCEEEEEEEEETTT----------TEEEEEEEEEESCCCCSTTSCCCEEEEEEEET--TCCSCEECCCCTTCSSCE
T ss_pred chhcceEEEEEEEEeCCC----------CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcC--CCCeeEEEEEeccccCcc
Confidence 345679999999997543 122332222 222334556788999988643 345678999999999999
Q ss_pred cCceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 453 WNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 453 wne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
|||.|.|.+... ....|.|+|||++..++ ++||++.|+|+++.......+||+|+.+
T Consensus 84 wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~sa 143 (143)
T d1rsya_ 84 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143 (143)
T ss_dssp EEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred eeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCCC
Confidence 999999988633 56789999999998876 7999999999999777777899999863
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57 E-value=9.7e-15 Score=123.83 Aligned_cols=100 Identities=22% Similarity=0.358 Sum_probs=82.5
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeeccc-CCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
..+.++||+.+++ +.++++|++++ ++.||.|||.|+|.+.+. ...|+|+|||++.+++ ++||++.|+|.++.
T Consensus 27 ~~g~~Dpyv~v~~-----~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~ 100 (136)
T d1wfja_ 27 FLNNMDPYVQLTC-----RTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPLEPVF 100 (136)
T ss_dssp SSCSSCCCEEEES-----SSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTTTCCSEEEEEESHHHH
T ss_pred CCCCCCccEEEEE-----eeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCCCCCEEEEEEEEhHHhc
Confidence 3456789998874 55677888877 589999999999999864 4579999999999876 79999999999987
Q ss_pred ccce-eeeEEEcC--CCCccEEEEEEEEEeC
Q 009664 496 LEGE-YTDCFELD--GTKSGKLKLHLKWMPQ 523 (529)
Q Consensus 496 ~~~~-~~~w~~L~--~~~~G~i~l~~~~~~~ 523 (529)
.... ...||+|. +...|+|++++.|+|.
T Consensus 101 ~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 101 VEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp HHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred ccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence 6544 47899985 4456999999999985
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.4e-14 Score=122.95 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=94.3
Q ss_pred CCccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhhhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 375 DTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 375 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
+....|+|++++.|.+.. ..+.+..+++. ..+..+.+++|+++++... .+..++||++++++.||.||
T Consensus 8 s~~~~~~l~~sl~y~~~~----------~~L~V~v~~a~-~L~~~g~~dpyVkv~l~~~-~~~~~~kT~v~~~~~~P~wn 75 (138)
T d1wfma_ 8 SWNQAPKLHYCLDYDCQK----------AELFVTRLEAV-TSNHDGGCDCYVQGSVANR-TGSVEAQTALKKRQLHTTWE 75 (138)
T ss_dssp CCSSCCEEEEEEEEETTT----------TEEEEEEEEEE-CCCCSSCCCEEEEEEEEET-TEEEEEECCCCCCCSSEECS
T ss_pred CCCcCCEEEEEEEECCCC----------CEEEEEEEEcC-CCCCCCCcCcEEEEEECCC-CCccceeeeEECCCCCceEe
Confidence 455679999999997543 22333333321 1134566789999987543 33456899999999999999
Q ss_pred ceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCC
Q 009664 455 QTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 510 (529)
Q Consensus 455 e~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 510 (529)
|.|.|.+... ....|.|+|||++.+++ ++||++.|+|.++......+.|++|...+
T Consensus 76 e~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 76 EGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp SCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred eeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence 9999998643 56789999999998876 79999999999987666679999998753
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=6.5e-15 Score=125.19 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=77.4
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|+++++|.|... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.
T Consensus 1 rG~l~~sl~Y~~~~~----------~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~ 70 (138)
T d1w15a_ 1 RGELLVSLCYQSTTN----------TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 70 (138)
T ss_dssp CCEEEEEEEEETTTT----------EEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEE
T ss_pred CcEEEEEEEEcCCCC----------EEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcE
Confidence 699999999997542 22332222 222334456778999999876544456779999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccc
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 494 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l 494 (529)
|.|.+... ....|.|+|||++.+++ ++||++.|++++.
T Consensus 71 f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 71 FVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred EEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 99998533 44579999999998876 7999999999864
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.5e-15 Score=125.50 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=87.8
Q ss_pred ccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccC
Q 009664 377 KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWN 454 (529)
Q Consensus 377 ~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wn 454 (529)
.+.|+|.++++|.+.. ..+.+..++ .+...+..+.+++|+++++.. ...+++||+++++|.||+||
T Consensus 2 ~p~G~l~~sl~y~~~~----------~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~~P~wn 69 (130)
T d1dqva1 2 APCGRISFALRYLYGS----------DQLVVRILQALDLPAKDSNGFSDPYVKIYLLP--DRKKKFQTKVHRKTLNPIFN 69 (130)
T ss_dssp CSSCEEEEEEECCSSS----------CEEEEEEEEEECCCCCSTTSCCCEEEEEECTT--STTSCEECCCCCSCSSCEEE
T ss_pred CCcEEEEEEEEEECCC----------CEEEEEEEeeeCCccccCCCCcceEEEEEEcc--CCCceEeceeEcCCCCeeee
Confidence 4679999999997643 223332222 233344556788999887532 24457899999999999999
Q ss_pred ceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEeccccccc-c-eeeeEEEcCCC
Q 009664 455 QTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-G-EYTDCFELDGT 509 (529)
Q Consensus 455 e~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~-~-~~~~w~~L~~~ 509 (529)
|.|.|.+... ....|.|+|||++.+++ ++||++.|++...... . ....||+|..+
T Consensus 70 e~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 70 ETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp EEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred eEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 9999998643 56679999999998876 8999999986544333 2 34679999874
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=3.1e-14 Score=117.91 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=81.4
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccc-
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVIL- 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~- 496 (529)
..+.++||+.|++-......+.++|+++++|+||+|||+|+|.+.+ ...|.|.|||++ ++++|.+.+++.++..
T Consensus 20 ~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~ 94 (123)
T d1bdya_ 20 EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---EDPMSEVTVGVSVLAER 94 (123)
T ss_dssp CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TEEEEEEEEEHHHHHHH
T ss_pred CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---ccccCccEEehhheeec
Confidence 4567889999997555444455689999999999999999999975 468999999986 4799999999999864
Q ss_pred ----cceeeeEEEcCCCCccEEEEEEEEEe
Q 009664 497 ----EGEYTDCFELDGTKSGKLKLHLKWMP 522 (529)
Q Consensus 497 ----~~~~~~w~~L~~~~~G~i~l~~~~~~ 522 (529)
+...+.|++|+. .|+|+++++|-+
T Consensus 95 ~~~~~~~~~~W~~L~~--~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 95 CKKNNGKAEFWLDLQP--QAKVLMCVQYFL 122 (123)
T ss_dssp HHTTTTEEEEEEECBS--SCEEEEEEEEEE
T ss_pred cccCCCcccEEEeCCC--CEEEEEEEEEec
Confidence 234689999974 799999999975
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=6.5e-15 Score=122.98 Aligned_cols=117 Identities=22% Similarity=0.446 Sum_probs=84.4
Q ss_pred cEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceE
Q 009664 380 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTF 457 (529)
Q Consensus 380 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f 457 (529)
|+|++++.|.+... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.|
T Consensus 1 G~l~l~l~y~~~~~----------~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f 70 (125)
T d2bwqa1 1 GQLSIKLWFDKVGH----------QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 70 (125)
T ss_dssp CEEEEEEEEETTTT----------EEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEE
T ss_pred CEEEEEEEEECCCC----------EEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEE
Confidence 78999999976542 23332222 2223345567789999998765556677899999999999999999
Q ss_pred EEE-ee--cCCCCEEEEEEEECCCCC--C-CeeEEEEEecccccccceeeeEEEcC
Q 009664 458 DFV-VE--DGLHDMLIAEVWDHDTFG--K-DYMGRCILTLTRVILEGEYTDCFELD 507 (529)
Q Consensus 458 ~f~-v~--~~~~~~L~i~V~D~~~~~--~-d~lG~~~i~L~~l~~~~~~~~w~~L~ 507 (529)
.|. +. +.....|.|+|||++..+ + ++||++.|+|+++..++. .+||+|+
T Consensus 71 ~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 71 IYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 996 44 224568999999998763 2 489999999999876554 6899985
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.50 E-value=4.5e-14 Score=119.44 Aligned_cols=98 Identities=15% Similarity=0.328 Sum_probs=81.4
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEecccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 496 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~ 496 (529)
..+..+||+.+.+ ......+|++++++.||.|||.|+|.+++ ...|.|+|||++.+++ ++||++.|+|+++..
T Consensus 34 ~~~~~DPYv~v~l----~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~ 107 (136)
T d1gmia_ 34 QTFLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELAVFHDAPIGYDDFVANCTIQFEELLQ 107 (136)
T ss_dssp CCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTS
T ss_pred CCCCcCcEEEEEe----CCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEEEEEecCCCCceeEEEEEEEHHHhhh
Confidence 3456789998875 23345689999999999999999999975 3689999999999876 799999999999987
Q ss_pred cc--eeeeEEEcCCCCccEEEEEEEEEeC
Q 009664 497 EG--EYTDCFELDGTKSGKLKLHLKWMPQ 523 (529)
Q Consensus 497 ~~--~~~~w~~L~~~~~G~i~l~~~~~~~ 523 (529)
+. ..+.||+|++ .|+|+++++++|.
T Consensus 108 ~~~~~~~~w~~L~p--~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 108 NGSRHFEDWIDLEP--EGKVYVIIDLSGS 134 (136)
T ss_dssp TTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred cCCcceeEEEeCCC--CcEEEEEEEEEeC
Confidence 64 3578999986 5999999988873
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.4e-14 Score=122.94 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=87.9
Q ss_pred ccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCce
Q 009664 379 RGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQT 456 (529)
Q Consensus 379 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 456 (529)
+|+|+++++|.|... .+.+..++ .+...+..+.+++|+++++........++||++++++.||.|||.
T Consensus 1 rG~l~l~l~Y~~~~~----------~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~ 70 (137)
T d2cm5a1 1 RGKILVSLMYSTQQG----------GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 70 (137)
T ss_dssp CCEEEEEEEEETTTT----------EEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEE
T ss_pred CcEEEEEEEEECCCC----------EEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceE
Confidence 699999999986542 23332222 222334556788999999876655667789999999999999999
Q ss_pred EEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCCCc
Q 009664 457 FDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS 511 (529)
Q Consensus 457 f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~~~ 511 (529)
|.|.++.. ....|.|+|||++.+++ ++||++.++++++.. ...+||+|...+.
T Consensus 71 f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~ 126 (137)
T d2cm5a1 71 FFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYECLKNKD 126 (137)
T ss_dssp EEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTT
T ss_pred EEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCc--chhhhhhHhhCCC
Confidence 99998643 56789999999998766 799999999987532 2356776655443
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1e-14 Score=121.97 Aligned_cols=97 Identities=24% Similarity=0.400 Sum_probs=80.7
Q ss_pred CCcccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 417 GEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 417 ~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
+..+.++||+.+.+ +.++++|+++++|.||.|||.|+|.+.++ .+.|.|+|||++.+++ ++||++.|+|+++.
T Consensus 22 d~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~ 95 (126)
T d2ep6a1 22 DFSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR 95 (126)
T ss_dssp SSSSCCCEEEEEEE-----TTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEEEECCBCEEEGGGCC
T ss_pred CCCCCcCeEEEEEc-----CCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcCcceEEEEEEEHHHCC
Confidence 34567789998875 66789999999999999999999999875 4789999999998876 79999999999986
Q ss_pred ccceeeeEEEcCC-----CCccEEEEEEEEE
Q 009664 496 LEGEYTDCFELDG-----TKSGKLKLHLKWM 521 (529)
Q Consensus 496 ~~~~~~~w~~L~~-----~~~G~i~l~~~~~ 521 (529)
... .+||.|.. ..+|+|+|++++.
T Consensus 96 ~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 96 DGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp SSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence 543 57888753 3579999998874
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=3.7e-14 Score=123.22 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=92.5
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
.+..|+|.++++|.|... .+.+..++ .+...+..+.+++|+++++...+....++||++++++.||+|
T Consensus 8 ~~~~G~l~~sl~Y~~~~~----------~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~w 77 (157)
T d1uowa_ 8 LEKLGDICFSLRYVPTAG----------KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77 (157)
T ss_dssp GGCCCEEEEEEEEETTTT----------EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEE
T ss_pred ceeeeEEEEEEEEcCCCC----------EEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCccc
Confidence 456899999999987542 23333222 222334556788999999766544445679999999999999
Q ss_pred CceEEEEeecC--CCCEEEEEEEECCCCCC-CeeEEEEEecccc----------ccc--ceeeeEEEcCCC
Q 009664 454 NQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRV----------ILE--GEYTDCFELDGT 509 (529)
Q Consensus 454 ne~f~f~v~~~--~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l----------~~~--~~~~~w~~L~~~ 509 (529)
||.|.|.++.. ....|.|+|||++.+++ ++||++.|++... ... ....+||+|...
T Consensus 78 ne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 78 NESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp EEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred CCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 99999998654 46689999999999876 7999999999763 222 235799999753
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=6.1e-15 Score=126.13 Aligned_cols=122 Identities=20% Similarity=0.353 Sum_probs=91.3
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhh--hhhhcCCcccCCCceEEEEEEEc---------cCCeeEeeec
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLE--KVLTNGEKALKSGANGTEAIELE---------KDASQKRREV 444 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~v~~~~~~---------~~~~~~kT~v 444 (529)
...+|+|++++.|.. ..+.+..++ .+...+..+.++||+++++.... .+..++||++
T Consensus 3 ~p~~G~l~lsl~y~~------------~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v 70 (142)
T d1rh8a_ 3 HPITGEIQLQINYDL------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY 70 (142)
T ss_dssp CCCCCEEEEEEEEET------------TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTT
T ss_pred CCcceEEEEEEEEeC------------CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccC
Confidence 346799999999941 123333322 23334556778999999864222 1223468999
Q ss_pred ccCCCCCccCceEEEEee---cCCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 445 VNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 445 ~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
++++.||.|||.|.|.+- +.....|.|+|||++.+++ ++||++.|+|+++.......+||+|.+.
T Consensus 71 ~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 71 VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp THHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 999999999999999742 3357789999999998877 7999999999999877778899999875
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=4.5e-13 Score=112.43 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=79.2
Q ss_pred CcccCCCceEEEEEEEccCCeeEeeecccCC-CCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccc
Q 009664 418 EKALKSGANGTEAIELEKDASQKRREVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVI 495 (529)
Q Consensus 418 ~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~ 495 (529)
..+.++||+++++.......+++||++++++ .||.|||+|+|.+..+..+.|.|+|||++..++ ++||++.|+|+++.
T Consensus 23 ~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~ 102 (131)
T d1qasa2 23 KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLK 102 (131)
T ss_dssp ---CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBC
T ss_pred CCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccC
Confidence 3456789999998666666788999988765 699999999999987777899999999999876 79999999999985
Q ss_pred ccceeeeEEEcCCCC-----ccEEEEEEEEE
Q 009664 496 LEGEYTDCFELDGTK-----SGKLKLHLKWM 521 (529)
Q Consensus 496 ~~~~~~~w~~L~~~~-----~G~i~l~~~~~ 521 (529)
.. .+|++|.+.. .+.|.+++.++
T Consensus 103 ~g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 103 QG---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp CE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 32 4689986532 34566676654
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=8.7e-13 Score=109.51 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=67.3
Q ss_pred cCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCCCeeEEEEEecccccccc--
Q 009664 421 LKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG-- 498 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~~~~-- 498 (529)
..+||+.+.+ ++.+.+|.+++ +.||.|||.|.|.+.++ ...|.|+|||++..++++||++.|+|+++....
T Consensus 19 ~~dpYv~l~~-----~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~ 91 (128)
T d2cjta1 19 KFNTYVTLKV-----QNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEE 91 (128)
T ss_dssp GCEEEEEEEE-----TTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSC
T ss_pred CcCeEEEEEe-----CCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcceEEEEEEehhhccCCCC
Confidence 4568887775 56788888876 56999999999999876 578999999999877689999999999997543
Q ss_pred eeeeEEEcCC
Q 009664 499 EYTDCFELDG 508 (529)
Q Consensus 499 ~~~~w~~L~~ 508 (529)
...+||+|..
T Consensus 92 ~~~~W~~L~~ 101 (128)
T d2cjta1 92 GPGEWLTLDS 101 (128)
T ss_dssp CCCEEEECBC
T ss_pred CCCeeEECCc
Confidence 3478999964
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=8e-13 Score=111.92 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=85.9
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCc-ccCCCceEEEEEEEccCCeeEeeecccCCCCCc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEK-ALKSGANGTEAIELEKDASQKRREVVNDCLNPI 452 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~-~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~ 452 (529)
+...|+|++++.|.+... .+.+..+++ +...+.. +.+++|+++++.. ....++||++++++.||.
T Consensus 5 ~~~~G~l~~sl~Y~~~~~----------~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~--~~~~~~kT~v~~~t~nP~ 72 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNFERK----------AFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHKVKTRVLRKTLDPA 72 (138)
T ss_dssp CCCCCEEEEEEEEEGGGT----------EEEEEEEEEESCCCCBTTTTBCEEEEEEEEET--TTCSEEECCCCSSCSSCE
T ss_pred CCCCEEEEEEEEEeCCCC----------EEEEEEEEecCCCCCCCCCCccceEEEEEEcC--CCCEeEeCeeEeCCCCCc
Confidence 455799999999986542 223332222 2122222 2467999988753 355678999999999999
Q ss_pred cCceEEEE-eec--CCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc-ceeeeEEEcCCC
Q 009664 453 WNQTFDFV-VED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYTDCFELDGT 509 (529)
Q Consensus 453 wne~f~f~-v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~-~~~~~w~~L~~~ 509 (529)
|||.|.|. ++. .....|+|+|||++.+++ ++||++.|+|+++... .....|..+..+
T Consensus 73 wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~ 134 (138)
T d1ugka_ 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred eeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCC
Confidence 99999996 432 235689999999998876 8999999999998543 445666666443
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5e-12 Score=104.09 Aligned_cols=94 Identities=21% Similarity=0.398 Sum_probs=71.2
Q ss_pred EEEEEEEEecCCCccCCCCCCCcEEEEEEec---CCCCeEeccc--cCCCCCCeeccE-EEE-EEecCCCCEEEEEEEEC
Q 009664 263 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKT--INNDLNPIWNEH-FEF-IVEDESTQHLVVRIYDD 335 (529)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~--~~~t~nP~Wne~-f~~-~v~~~~~~~l~i~v~d~ 335 (529)
+|+|+|++|++|+.+ +.||||++++-+ +..++++|++ .+++.||.|||. |.+ .+..+....|+|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999864 579999999953 1223344444 478999999976 444 34444455899999997
Q ss_pred CCCCCCceeEEEEEECcccCCCceeeEEEEcc
Q 009664 336 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 367 (529)
Q Consensus 336 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 367 (529)
+ |++||++.+|++.+..|. .+++|.
T Consensus 78 d----~~~lG~~~ipl~~l~~Gy---R~vpL~ 102 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSGY---HHLCLH 102 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCEE---EEEEEE
T ss_pred C----CCEEEEEEEEcccCcCCc---eEEEcc
Confidence 5 789999999999998764 566774
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.9e-13 Score=111.45 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=76.6
Q ss_pred cccCCCceEEEEEEEccCCeeEeeecccCCCCCccCceEEEEeecCCCCEEEEEEEECCCCCC-CeeEEEEEeccccccc
Q 009664 419 KALKSGANGTEAIELEKDASQKRREVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 497 (529)
Q Consensus 419 ~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~ 497 (529)
.+.++||+.+.+ +.+++||+++++|.||.|||.|+|.+.+ .+.|.|+|||++.+++ ++||++.++|+++...
T Consensus 24 ~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~ 96 (133)
T d2nq3a1 24 WFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKS 96 (133)
T ss_dssp CCCCCEEEEEEE-----TTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHH
T ss_pred CCCcCeEEEEEE-----CCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceEEEEEEEHHHhhhh
Confidence 345789998874 6678999999999999999999999874 5689999999999887 7999999999998653
Q ss_pred --ce---eeeEEEcCC-----CCccEEEEEEEEEeC
Q 009664 498 --GE---YTDCFELDG-----TKSGKLKLHLKWMPQ 523 (529)
Q Consensus 498 --~~---~~~w~~L~~-----~~~G~i~l~~~~~~~ 523 (529)
.. ...|+.|.+ ...|+|.+.+....+
T Consensus 97 ~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~~ 132 (133)
T d2nq3a1 97 NNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 132 (133)
T ss_dssp TTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred cCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEEc
Confidence 22 234444432 245898888876543
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=2e-14 Score=123.22 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=88.8
Q ss_pred CccccEEEEEEEEEEcccCCCCCCCCCCCCcchhhhh--hhhcCCcccCCCceEEEEEEEccCCeeEeeecccCCCCCcc
Q 009664 376 TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK--VLTNGEKALKSGANGTEAIELEKDASQKRREVVNDCLNPIW 453 (529)
Q Consensus 376 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~kT~v~~~t~nP~w 453 (529)
....|+|+++++|.|... .+.+..+++ +...+..+.+++|+++++........++||++++++.||.|
T Consensus 3 ~~~~G~l~~sl~Y~~~~~----------~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~w 72 (145)
T d1dqva2 3 KADLGELNFSLCYLPTAG----------LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 72 (145)
T ss_dssp CSCCCEEEEEEEEETTTT----------EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEE
T ss_pred cCcceEEEEEEEEcCCCC----------EEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCcee
Confidence 456799999999997542 233332222 22334456678999998765444455789999999999999
Q ss_pred CceEEEEeec--CCCCEEEEEEEECCCCCC-CeeEEEEEecccccccceeeeEEEcCCC
Q 009664 454 NQTFDFVVED--GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 509 (529)
Q Consensus 454 ne~f~f~v~~--~~~~~L~i~V~D~~~~~~-d~lG~~~i~L~~l~~~~~~~~w~~L~~~ 509 (529)
||.|.|.+.. .....|.|+|||++..++ ++||++.|+|+.+...+ ..+|++|..+
T Consensus 73 ne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~~~ 130 (145)
T d1dqva2 73 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG-REHWAEMLAN 130 (145)
T ss_dssp EECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHH-HHHHHTSSSS
T ss_pred cceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchh-hHHHHHHHhC
Confidence 9999998853 355679999999998876 79999999998764332 3566666543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.3e-08 Score=83.04 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=62.4
Q ss_pred cCCCceEEEEEEEcc-CCeeEeeec--ccCCCCCccCce-EEEE-eecCCCCEEEEEEEECCCCCCCeeEEEEEeccccc
Q 009664 421 LKSGANGTEAIELEK-DASQKRREV--VNDCLNPIWNQT-FDFV-VEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVI 495 (529)
Q Consensus 421 ~~~~~l~v~~~~~~~-~~~~~kT~v--~~~t~nP~wne~-f~f~-v~~~~~~~L~i~V~D~~~~~~d~lG~~~i~L~~l~ 495 (529)
..+||++|.+..... ..++++|++ ..++.||.|||. |.|. +..+....|+|.|||++ +++||++.++|+.+.
T Consensus 17 ~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d---~~~lG~~~ipl~~l~ 93 (122)
T d2zkmx2 17 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALN 93 (122)
T ss_dssp CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBC
T ss_pred CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC---CCEEEEEEEEcccCc
Confidence 356999999764322 123334443 456899999976 4443 45556678999999986 589999999999984
Q ss_pred ccceeeeEEEcCCCCccEEEE
Q 009664 496 LEGEYTDCFELDGTKSGKLKL 516 (529)
Q Consensus 496 ~~~~~~~w~~L~~~~~G~i~l 516 (529)
.. .++.+|.+.....+..
T Consensus 94 ~G---yR~vpL~~~~g~~l~~ 111 (122)
T d2zkmx2 94 SG---YHHLCLHSESNMPLTM 111 (122)
T ss_dssp CE---EEEEEEECTTCCEEEE
T ss_pred CC---ceEEEccCCCcCCCCC
Confidence 33 5778887764444443
|