Citrus Sinensis ID: 009700
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SLX0 | 534 | Importin subunit alpha-1b | yes | no | 0.994 | 0.983 | 0.738 | 0.0 | |
| Q71VM4 | 526 | Importin subunit alpha-1a | no | no | 0.977 | 0.980 | 0.753 | 0.0 | |
| O22478 | 527 | Importin subunit alpha OS | N/A | no | 0.994 | 0.996 | 0.749 | 0.0 | |
| Q96321 | 532 | Importin subunit alpha-1 | no | no | 0.998 | 0.990 | 0.739 | 0.0 | |
| O04294 | 531 | Importin subunit alpha-2 | no | no | 0.988 | 0.983 | 0.672 | 0.0 | |
| Q76P29 | 516 | Importin subunit alpha-B | yes | no | 0.956 | 0.978 | 0.602 | 1e-172 | |
| O35345 | 536 | Importin subunit alpha-7 | yes | no | 0.986 | 0.972 | 0.554 | 1e-152 | |
| Q0V7M0 | 536 | Importin subunit alpha-7 | yes | no | 0.986 | 0.972 | 0.552 | 1e-152 | |
| Q5RBV0 | 536 | Importin subunit alpha-7 | yes | no | 0.986 | 0.972 | 0.552 | 1e-151 | |
| O60684 | 536 | Importin subunit alpha-7 | yes | no | 0.986 | 0.972 | 0.552 | 1e-151 |
| >sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/535 (73%), Positives = 455/535 (85%), Gaps = 10/535 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGL------I 54
MSLRP R EVR+ YK VDADE RRRREDN+VEIRK++RE+SLLKKRR+GL
Sbjct: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60
Query: 55 LQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA 114
+ P+ ++++++KLE +P+MVQ V S++S +QLEATTQFRKLLSIER PPIEEVI
Sbjct: 61 AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120
Query: 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDV 174
GVVPRF+ FL R D PQLQFEAAWALTNIASGTS++T+VV+E GAVP FV+LL S S+DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180
Query: 175 REQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234
REQAVWALGNVAGDSP CRDLVL+ G L PLL QLNEH+KLSMLRNATWTLSNFCRGKP
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240
Query: 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294
F+QV+PAL+ALQ LI S DEEVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL+
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
Query: 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354
H S +VL+PALRTVGNIVTGDD QTQCVID+Q LP L LLT N+KKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360
Query: 355 TAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCI 414
TAG+R QIQAVI ANIIAPLV+LLQ AEF++KKEA+WAISNATSGGT +QI++LV+QGCI
Sbjct: 361 TAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI 420
Query: 415 KPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ 474
KPLCDLLVCPDPRIVTVCLEGLENILK+GEA+K G+ N Y++MID+ +GL+KIENLQ
Sbjct: 421 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQ 480
Query: 475 SHDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPE--FNFGTGQPNIPSEGFKF 527
SHDN EIYEKAVK+LE YW+EEEDD +P G+N + FNFG QPN+PS GF F
Sbjct: 481 SHDNTEIYEKAVKMLESYWLEEEDDA--MPSGDNAQNGFNFGNQQPNVPSGGFNF 533
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Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/519 (75%), Positives = 446/519 (85%), Gaps = 3/519 (0%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP R EVR+ YK VDA+E RRRREDN+VEIRK++RE+SLLKKRREGL Q+
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
A ++KKLES+P+M+ GV S+++ LQLEATTQFRKLLSIER PPIEEVI++GVVPRF
Sbjct: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
V+FL R D PQLQFEAAWALTNIASGTSE+T+VVI+HGAVP FV+LLGS+SDDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
ALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP F+Q
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
RPAL AL LI S+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH S +V
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
L+PALRTVGNIVTGDD QTQC+ID+Q LP L LLTQN KKSIKKEACWTISNITAG++
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420
QIQAVI A II PLV LLQ AEF++KKEA+WAISNATSGG+ +QI++LVS+GCIKPLCDL
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 420
Query: 421 LVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNE 480
L+CPD RIVTVCLEGLENILK+GE DK + NV+S+MIDE +GL+KIENLQSHDNNE
Sbjct: 421 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 480
Query: 481 IYEKAVKLLERYWVEEEDDEQNIPDGNNPE---FNFGTG 516
IYEKAVK+LE YW++EEDD P+ F+FG G
Sbjct: 481 IYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQG 519
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Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2 | Back alignment and function description |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/530 (74%), Positives = 452/530 (85%), Gaps = 5/530 (0%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQ-P 59
MSLRP SRTE R+ YK VDA+E RRRREDN+VEIRKNKRE++LLKKRREGL+ Q P
Sbjct: 1 MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60
Query: 60 VTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPR 119
T A + ++KKLE++P ++ GV S++S LQLE TTQFRKLLSIER PPIEEVI++GVVPR
Sbjct: 61 STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120
Query: 120 FVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAV 179
FVEFL R D PQLQFEAAWALTNIASGTSE+T+VVI++G+VP F++LL S SDDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ 239
WALGN+AGDSP RDLVL HGAL+ LLAQ NE +KLSMLRNATWTLSNFCRGKP F+Q
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240
Query: 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT 299
+ AL L LI S+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELLLHSS +
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300
Query: 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359
VL+PALRTVGNIVTGDD QTQ +ID+ LP L LLTQNYKKSIKKEACWTISNITAG+R
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360
Query: 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCD 419
+QIQ VIEA IIAPLVYLLQ+AEFE+KKEA+WAISNATSGG +QI+FLVSQGCIKPLCD
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCD 420
Query: 420 LLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSHDN 478
LLVCPDPRIVTVCLEGLENILKIGEADK+ G+T NVY+++IDE +GL+KIENLQSHDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDN 480
Query: 479 NEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKFS 528
EIYEKAVK+LE YW+EEED ++ N +F FG ++PS GF FS
Sbjct: 481 TEIYEKAVKILETYWLEEEDVPVSL---NEDQFEFGGADISLPSGGFNFS 527
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Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs. Solanum lycopersicum (taxid: 4081) |
| >sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/533 (73%), Positives = 452/533 (84%), Gaps = 6/533 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGL-ILQSQP 59
MSLRP ++TEVR+ YK VDA+E RRRREDN+VEIRK+KRE+SL+KKRREG+ LQ P
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60
Query: 60 VTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPR 119
A AS++KKL+S+ MV GV S++ LQLE+TTQFRKLLSIER PPIEEVI AGVVPR
Sbjct: 61 SASA-ASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119
Query: 120 FVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAV 179
FVEFL + D P +QFEAAWALTNIASGTS+HT+VVI+H AVP FVQLL S SDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ 239
WALGNVAGDSP CRDLVL GAL+PLL QLNEH+KLSMLRNATWTLSNFCRGKP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239
Query: 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT 299
V+PAL AL+ LI S DEEVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELLLH S +
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299
Query: 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359
VL+PALRTVGNIVTGDD QTQCVI++ LP L LLTQN+KKSIKKEACWTISNITAG++
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359
Query: 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCD 419
QIQ V+EAN+I+PLV LLQ+AEF++KKEA+WAISNATSGG+ +QI++LV QGCIKPLCD
Sbjct: 360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419
Query: 420 LLVCPDPRIVTVCLEGLENILKIGEADKEAGST-TANVYSEMIDECDGLDKIENLQSHDN 478
LLVCPDPRI+TVCLEGLENILK+GEA+K G T N Y+++ID+ +GL+KIENLQSHDN
Sbjct: 420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479
Query: 479 NEIYEKAVKLLERYWVEEEDDEQNIP---DGNNPEFNFGTGQPNIPSEGFKFS 528
NEIYEKAVK+LE YW+EEEDDE P DG+ F FG Q +PS GF FS
Sbjct: 480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS 532
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Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/535 (67%), Positives = 425/535 (79%), Gaps = 13/535 (2%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP ++TEVR+ YK VDA+E RRRREDNLVEIRKNKRE++L KKR S
Sbjct: 1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKR----FTSSMAF 56
Query: 61 TEANASIEKKLES-------IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIR 113
A E+ L S +P+MV G+ SE+S QLEAT RKLLSIE+ PPI EV++
Sbjct: 57 GSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQ 116
Query: 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDD 173
+GVVPR V+FL R D P+LQFEAAWALTNIASGTSE+T V+IE GAVP F+QLL SAS+D
Sbjct: 117 SGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASED 176
Query: 174 VREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233
VREQAVWALGNVAGDSP CRDLVLS+GA+ PLL+Q NE++KLSMLRNATWTLSNFCRGKP
Sbjct: 177 VREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKP 236
Query: 234 PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293
P F+Q +PAL L+ L+ S DEEVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL
Sbjct: 237 PPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLL 296
Query: 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353
HSS +VL+PALRT+GNIVTGDD QTQ V+D Q LP L LL NYKKSIKKEACWTISN
Sbjct: 297 GHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISN 356
Query: 354 ITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGC 413
ITAG+ QIQAVI+A II LV++LQ AEFEVKKEA+W ISNATSGGT +QI+F+VSQGC
Sbjct: 357 ITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGC 416
Query: 414 IKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIEN 472
IKPLCDLL CPD ++VTVCLE LENIL +GEA+K G T N+Y++MIDE +GL+KIEN
Sbjct: 417 IKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIEN 476
Query: 473 LQSHDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
LQSHDNN+IY+KAVK+LE +W E+ ++E N + + P+ F G N+P F F
Sbjct: 477 LQSHDNNDIYDKAVKILETFWTEDNEEEGND-ENHAPQSGFQFGSTNVPPGQFNF 530
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Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 603 bits (1556), Expect = e-172, Method: Compositional matrix adjust.
Identities = 309/513 (60%), Positives = 387/513 (75%), Gaps = 8/513 (1%)
Query: 7 SRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANAS 66
S+ E RK YK +D+DE+RR+RE+ + IRKNKRE+SLLKKR + + S PV + ++
Sbjct: 4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQA-VPGSTPV-KVDSL 61
Query: 67 IEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR 126
I ++LE +PS+V + SEN L L++TT FRKLLSIE+ PPIEEVI+ G+VPR V+FL
Sbjct: 62 INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121
Query: 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
D PQLQFEAAWALTNIASGT E TRVVIE+GA+ FV LL S DDVREQAVWALGN+A
Sbjct: 122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPAPFDQVRPAL 244
GDS CRDLVLSH AL PLL+ L + K+SM+RNATWTLSNFCRGKP PF+ VR +L
Sbjct: 182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241
Query: 245 AALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304
L LI+ DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELL H + V PA
Sbjct: 242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301
Query: 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364
LRT+GNIVTGDD QTQ V+ Q L L LL Q+ K++I+KEACWTISNITAG ++QIQ
Sbjct: 302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360
Query: 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424
VI+ANII LVYLL +AEFE++KEA+WAISNATS GT +QI FLVSQGC+KPLCDLL
Sbjct: 361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420
Query: 425 DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484
DPRI+ V LEG+ENIL G+ KEA T N Y ++I++ DGL KI +LQ H N + +EK
Sbjct: 421 DPRIINVALEGIENILVAGK--KEAQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEK 478
Query: 485 AVKLLERYWVEEEDDEQNI-PDGNNPEFNFGTG 516
+++ Y +E++DE ++ P+G++ F+ T
Sbjct: 479 VSRIISTYLEDEQEDEGDLMPEGSSFSFSNQTN 511
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Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Dictyostelium discoideum (taxid: 44689) |
| >sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/532 (55%), Positives = 376/532 (70%), Gaps = 11/532 (2%)
Query: 5 PGSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEA 63
PG + R KSYK ++ +E RRRRE+ +++RK KRE L K+R LI + + ++
Sbjct: 7 PG-KDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDS 65
Query: 64 ---NASIEKKL-ESIPS--MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GV 116
++ + ES+ + MV+ + S++S LQL T +FRKLLS E PPI+EVI GV
Sbjct: 66 LLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGV 125
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
V RFVEFL R++ LQFEAAWALTNIASGTS+ T++VIE GAVP F++LL S +DV+E
Sbjct: 126 VDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQE 185
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235
QAVWALGN+AGDS CRD VL+ L PLL L + ++L+M RNA W LSN CRGK PP
Sbjct: 186 QAVWALGNIAGDSSLCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPP 245
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
F +V P L L L+FSSD ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL+H
Sbjct: 246 EFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMH 305
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
+ V PALR VGNIVTGDD QTQ +++ LP L LL+ + K+SI+KEACWTISNIT
Sbjct: 306 NDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNIT 364
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+R+QIQAVI+ANI L+ +LQ AEF +KEA+WAI+NATSGGT EQI++LVS GCIK
Sbjct: 365 AGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIK 424
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS 475
PLCDLL D +IV V L GLENIL++GE + + + N Y +I+E GLDKIE LQS
Sbjct: 425 PLCDLLTVMDSKIVQVALNGLENILRLGEQESKRSGSGVNPYCGLIEEAYGLDKIEFLQS 484
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
H+N EIY+KA L+E Y+ E+DD P + + F QP P EGF+
Sbjct: 485 HENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mus musculus (taxid: 10090) |
| >sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/532 (55%), Positives = 375/532 (70%), Gaps = 11/532 (2%)
Query: 5 PGSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEA 63
PG + R KSYK ++ +E RRRRE+ +++RK KRE L K+R LI + + ++
Sbjct: 7 PG-KDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDS 65
Query: 64 ---NASIEKKL-ESIPS--MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GV 116
++ + ES+ + MV+ + S++ LQL T +FRKLLS E PPI+EVI GV
Sbjct: 66 LLMDSYVSSTTGESVITREMVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGV 125
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
V RFVEFL R++ LQFEAAWALTNIASGTS+ T++VIE GAVP F++LL S +DV+E
Sbjct: 126 VDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQE 185
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235
QAVWALGN+AGDS CRD VL+ L PLL L + ++L+M RNA W LSN CRGK PP
Sbjct: 186 QAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPP 245
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
F +V P L L L+FSSD ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL+H
Sbjct: 246 EFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMH 305
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
+ V PALR VGNIVTGDD QTQ +++ LP L LL+ + K+SI+KEACWTISNIT
Sbjct: 306 NDNKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNIT 364
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+R+QIQAVI+ANI L+ +LQ AEF +KEA+WAI+NATSGGT EQI++LVS GCIK
Sbjct: 365 AGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIK 424
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS 475
PLCDLL D +IV V L GLENIL++GE + + + N Y +I+E GLDKIE LQS
Sbjct: 425 PLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQS 484
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
H+N EIY+KA L+E Y+ E+DD P + + F QP P EGF+
Sbjct: 485 HENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Bos taurus (taxid: 9913) |
| >sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/532 (55%), Positives = 375/532 (70%), Gaps = 11/532 (2%)
Query: 5 PGSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEA 63
PG + R KSYK ++ +E RRRRE+ +++RK KRE L K+R LI + + ++
Sbjct: 7 PG-KDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDS 65
Query: 64 ---NASIEKKL-ESIPS--MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAG-V 116
++ + ES+ + MV+ + S++S LQL T +FRKLLS E PPI+EVI V
Sbjct: 66 LLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRV 125
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
V RFVEFL R++ LQFEAAWALTNIASGTS+ T++VIE GAVP F++LL S +DV+E
Sbjct: 126 VDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQE 185
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235
QAVWALGN+AGDS CRD VL+ L PLL L + ++L+M RNA W LSN CRGK PP
Sbjct: 186 QAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPP 245
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
F +V P L L L+FSSD ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL+H
Sbjct: 246 EFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMH 305
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
+ V PALR VGNIVTGDD QTQ +++ LP L LL+ + K+SI+KEACWTISNIT
Sbjct: 306 NDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNIT 364
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+R+QIQAVI+ANI L+ +LQ AEF +KEA+WAI+NATSGGT EQI++LVS GCIK
Sbjct: 365 AGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIK 424
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS 475
PLCDLL D +IV V L GLENIL++GE + + + N Y +I+E GLDKIE LQS
Sbjct: 425 PLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQS 484
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
H+N EIY+KA L+E Y+ E+DD P + + F QP P EGF+
Sbjct: 485 HENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Pongo abelii (taxid: 9601) |
| >sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/532 (55%), Positives = 375/532 (70%), Gaps = 11/532 (2%)
Query: 5 PGSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEA 63
PG + R KSYK ++ +E RRRRE+ +++RK KRE L K+R LI + + ++
Sbjct: 7 PG-KDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDS 65
Query: 64 ---NASIEKKL-ESIPS--MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAG-V 116
++ + ES+ + MV+ + S++S LQL T +FRKLLS E PPI+EVI V
Sbjct: 66 LLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRV 125
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
V RFVEFL R++ LQFEAAWALTNIASGTS+ T++VIE GAVP F++LL S +DV+E
Sbjct: 126 VDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQE 185
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235
QAVWALGN+AGDS CRD VL+ L PLL L + ++L+M RNA W LSN CRGK PP
Sbjct: 186 QAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPP 245
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
F +V P L L L+FSSD ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL+H
Sbjct: 246 EFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMH 305
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
+ V PALR VGNIVTGDD QTQ +++ LP L LL+ + K+SI+KEACWTISNIT
Sbjct: 306 NDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNIT 364
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+R+QIQAVI+ANI L+ +LQ AEF +KEA+WAI+NATSGGT EQI++LVS GCIK
Sbjct: 365 AGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIK 424
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS 475
PLCDLL D +IV V L GLENIL++GE + + + N Y +I+E GLDKIE LQS
Sbjct: 425 PLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQS 484
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
H+N EIY+KA L+E Y+ E+DD P + + F QP P EGF+
Sbjct: 485 HENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | ||||||
| 225450549 | 535 | PREDICTED: importin subunit alpha-1 [Vit | 0.998 | 0.985 | 0.820 | 0.0 | |
| 224125002 | 537 | predicted protein [Populus trichocarpa] | 1.0 | 0.983 | 0.819 | 0.0 | |
| 13752560 | 535 | importin alpha 1 [Capsicum annuum] | 0.996 | 0.983 | 0.801 | 0.0 | |
| 256016311 | 535 | importin alpha [Citrus sinensis] | 1.0 | 0.986 | 0.828 | 0.0 | |
| 449453998 | 537 | PREDICTED: importin subunit alpha-1-like | 1.0 | 0.983 | 0.804 | 0.0 | |
| 147818271 | 523 | hypothetical protein VITISV_026717 [Viti | 0.977 | 0.986 | 0.801 | 0.0 | |
| 225431871 | 529 | PREDICTED: importin subunit alpha-1 [Vit | 1.0 | 0.998 | 0.773 | 0.0 | |
| 126572488 | 542 | importin alpha-like protein [Brassica na | 1.0 | 0.974 | 0.765 | 0.0 | |
| 224123916 | 529 | predicted protein [Populus trichocarpa] | 0.998 | 0.996 | 0.767 | 0.0 | |
| 297843718 | 538 | hypothetical protein ARALYDRAFT_888168 [ | 0.998 | 0.979 | 0.766 | 0.0 |
| >gi|225450549|ref|XP_002281670.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296089795|emb|CBI39614.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/534 (82%), Positives = 478/534 (89%), Gaps = 7/534 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQP- 59
MSLRPGSRT+VRKKSYKTGVDA+EARRRREDNLVEIRKNKRED+LLKKRREGLILQSQ
Sbjct: 1 MSLRPGSRTDVRKKSYKTGVDAEEARRRREDNLVEIRKNKREDNLLKKRREGLILQSQQF 60
Query: 60 ---VTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGV 116
++ A +EK+LESI MVQGV S++ QLEATTQFRKLLSIER PPI+EVI+AGV
Sbjct: 61 SSDASQTTAVVEKRLESITLMVQGVWSDDPASQLEATTQFRKLLSIERSPPIDEVIKAGV 120
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
VPRFVEFL RHDLPQLQFEAAWALTN+ASGTSEHTRVVIEHGAVP FVQLL SASDDVRE
Sbjct: 121 VPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSASDDVRE 180
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
QAVWALGNVAGDSPSCRDLVL HGALMPLL+QLNEHSKLSMLRNATWTLSNFCRGKPP P
Sbjct: 181 QAVWALGNVAGDSPSCRDLVLGHGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTP 240
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296
F+QV+PAL L+ LI +DEEVLTDACWALSYLSDG NDKIQAV+EAGVCPRLVELLLH
Sbjct: 241 FEQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNDKIQAVLEAGVCPRLVELLLHP 300
Query: 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
S TVL+PALRTVGNIVTGDD QTQ VIDNQ LP LYQLLTQN+KKSIKKEACWTISNITA
Sbjct: 301 SPTVLIPALRTVGNIVTGDDAQTQFVIDNQVLPCLYQLLTQNHKKSIKKEACWTISNITA 360
Query: 357 GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416
G++ QIQAVIEANII PLV LLQHAEF++KKEA+W ISNATSGG+ EQIQFLVSQGCIKP
Sbjct: 361 GNKGQIQAVIEANIILPLVNLLQHAEFDIKKEAAWGISNATSGGSHEQIQFLVSQGCIKP 420
Query: 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQS 475
LCDLL+CPDPRIVTVCLEGLENILK+GEADKE+G N+Y++MIDECDGLDKIE LQ+
Sbjct: 421 LCDLLMCPDPRIVTVCLEGLENILKVGEADKESGKNGGINLYAQMIDECDGLDKIELLQT 480
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIP--DGNNPEFNFGTGQPNIPSEGFKF 527
HDNNEIYEK+VKLLERYW EE+++ QN+ DGN F FG+ QPN+P GFKF
Sbjct: 481 HDNNEIYEKSVKLLERYWAEEDEEVQNVQDGDGNQQGFGFGSSQPNLPPGGFKF 534
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125002|ref|XP_002319478.1| predicted protein [Populus trichocarpa] gi|222857854|gb|EEE95401.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/537 (81%), Positives = 480/537 (89%), Gaps = 9/537 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQ-- 58
MSLRPG+RTEVRKKSYKTGVDADEARRRREDNL+EIRKNKRED+LLKKRREGL+ QSQ
Sbjct: 1 MSLRPGTRTEVRKKSYKTGVDADEARRRREDNLLEIRKNKREDNLLKKRREGLLFQSQSQ 60
Query: 59 PVTEAN---ASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAG 115
P+ +A A+IEKKLES+P MVQGV S++ LQLEATTQFRKLLSIER PPI++VI+AG
Sbjct: 61 PLLDAAQHAANIEKKLESLPMMVQGVWSDDPSLQLEATTQFRKLLSIERSPPIDDVIKAG 120
Query: 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
VVPRFVEFL RHDLPQLQFEAAWALTN+ASGTSEHTRVVI+HGAVP FVQLL S SDDVR
Sbjct: 121 VVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIDHGAVPMFVQLLSSGSDDVR 180
Query: 176 EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235
EQAVWALGNVAGDSPSCRDLVL HGALMPLLAQLNE+SKLSMLRNATWTLSNFCRGKPP
Sbjct: 181 EQAVWALGNVAGDSPSCRDLVLGHGALMPLLAQLNENSKLSMLRNATWTLSNFCRGKPPT 240
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
PFDQV+PAL LQ LI +DEEVLTDACWALSYLSDG NDKIQAVI+AGVC RLVELLLH
Sbjct: 241 PFDQVKPALPVLQQLIHLNDEEVLTDACWALSYLSDGQNDKIQAVIDAGVCRRLVELLLH 300
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
S TVL+PALRTVGNIVTGDD QTQ VIDNQ LP L+QLL QN+KKSIKKEACWTISNIT
Sbjct: 301 PSPTVLIPALRTVGNIVTGDDGQTQFVIDNQVLPCLHQLLLQNHKKSIKKEACWTISNIT 360
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+R+QIQAVIEANII PLV LLQHAEF++KKEA+WAISNATS G+ EQIQFLVSQGCIK
Sbjct: 361 AGNRTQIQAVIEANIILPLVNLLQHAEFDIKKEAAWAISNATSAGSHEQIQFLVSQGCIK 420
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAG-STTANVYSEMIDECDGLDKIENLQ 474
PLCDLL+CPDPRIVTVCLEGLENILK+GEADKE G + N+Y++M+DECDGLDKIENLQ
Sbjct: 421 PLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNGGVNLYAQMVDECDGLDKIENLQ 480
Query: 475 SHDNNEIYEKAVKLLERYWVEEEDDE---QNIPDGNNPEFNFGTGQPNIPSEGFKFS 528
+HDNNEIYEKAVK+LERYW EEED E Q+ DGN F FGT QP++P GFKF
Sbjct: 481 THDNNEIYEKAVKILERYWAEEEDGEPIVQDGGDGNQQGFAFGTNQPSVPQGGFKFG 537
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13752560|gb|AAK38726.1|AF369706_1 importin alpha 1 [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/535 (80%), Positives = 473/535 (88%), Gaps = 9/535 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQ-- 58
MSLRP +RTEVRKK+YK GVDADEARRRREDNLVEIRKNKRED+LLKKRREGL+ SQ
Sbjct: 1 MSLRPSTRTEVRKKAYKIGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLFHSQQQ 60
Query: 59 --PVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGV 116
+ +IEK+LESIP MVQGV SE+ Q+EATT FRKLLSIER PPI+EVI+AGV
Sbjct: 61 LPDAAQTPDAIEKRLESIPVMVQGVWSEDPAAQIEATTHFRKLLSIERSPPIDEVIKAGV 120
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
+PRFVEFL RHDLPQLQFEAAWALTN+ASGTSEHTRVVI+HGAVP FVQLL SASDDVRE
Sbjct: 121 IPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIDHGAVPMFVQLLSSASDDVRE 180
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
QAVWALGNVAGDSPSCRDLVLS GALMPLL+QLNEHSKLSMLRNATWTLSNFCRGKPP P
Sbjct: 181 QAVWALGNVAGDSPSCRDLVLSQGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTP 240
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296
F+ V+PAL LQ LI SDEEVLTDACWALSYLSDG NDKIQAVI+AGVCPRLVELLLH
Sbjct: 241 FEAVKPALPVLQQLIHMSDEEVLTDACWALSYLSDGPNDKIQAVIDAGVCPRLVELLLHP 300
Query: 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
S TVL+PALRT GNIVTGDD QTQ VIDN+ LP LYQLLTQN+KKSIKKEACWTISNITA
Sbjct: 301 SPTVLIPALRTAGNIVTGDDAQTQYVIDNRVLPCLYQLLTQNHKKSIKKEACWTISNITA 360
Query: 357 GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416
G+R+QIQAVIEANII PLV+LLQ+AEF++KKEA+WAISNATSGG+ EQI+FL SQGCIKP
Sbjct: 361 GNRAQIQAVIEANIILPLVHLLQNAEFDIKKEAAWAISNATSGGSNEQIRFLASQGCIKP 420
Query: 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQS 475
LCDLL+CPDPRIVTVCLEGLENILK+GE DKE G+ N+Y++MIDEC+GLDKIENLQ+
Sbjct: 421 LCDLLICPDPRIVTVCLEGLENILKVGEMDKETGANGGINLYAQMIDECEGLDKIENLQT 480
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIP---DGNNPEFNFGTGQPNIPSEGFKF 527
HDNNEIYEK VK+LE+YW EED+EQN+P DGN F FG QPN+P+ GFKF
Sbjct: 481 HDNNEIYEKTVKILEKYWA-EEDEEQNLPDGVDGNQQGFQFGNNQPNVPAGGFKF 534
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256016311|gb|ACU56981.1| importin alpha [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/535 (82%), Positives = 474/535 (88%), Gaps = 7/535 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP +R EVRKK YKTGVDADEARRRREDNLVEIRKNKRED+LLKKRREGL+LQ Q
Sbjct: 1 MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
Query: 61 TE--ANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVP 118
+ +IEKKLESIPSMVQGV SE+ LQLEATTQFRKLLSIER PPI+EVI+AGVVP
Sbjct: 61 LLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
Query: 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQA 178
RFVEFL RHD+PQLQFEAAWALTN+ASGTSEHTRVVIEHGAVP FVQLL S SDDVREQA
Sbjct: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
Query: 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD 238
VWALGNVAGDSPSCRDLVLS GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP PF+
Sbjct: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
Query: 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298
QV+PAL LQ LI +DEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL+H S
Sbjct: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
Query: 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS 358
TVL+PALRTVGNIVTGDD QTQ VIDN LP LYQLLT N+KKSIKKEACWTISNITAG+
Sbjct: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTHNHKKSIKKEACWTISNITAGN 360
Query: 359 RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLC 418
R+QIQAVIEANII PLV+LLQHAEFE+KKEA+WAISNATSGG+ +QIQFLVSQGCIKPLC
Sbjct: 361 RAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLC 420
Query: 419 DLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSHD 477
DLLVCPDPRIVTVCLEGLENILK+GEADKE G NVY++MIDECDGLDKIENLQ+HD
Sbjct: 421 DLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHD 480
Query: 478 NNEIYEKAVKLLERYWVEEEDDEQNIPDGN----NPEFNFGTGQPNIPSEGFKFS 528
NNEIYEKAVK+LERYW EEE++EQ I +G F F T QPNIP GFKF
Sbjct: 481 NNEIYEKAVKILERYWAEEEEEEQLIQEGGIGNQQQGFGFATNQPNIPPGGFKFG 535
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453998|ref|XP_004144743.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449490806|ref|XP_004158712.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/537 (80%), Positives = 476/537 (88%), Gaps = 9/537 (1%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP +RT+VRKKSYKTGVDADEARRRREDNLVEIRKNKRED+LLKKRREGL+L SQ +
Sbjct: 1 MSLRPTTRTDVRKKSYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLHSQQL 60
Query: 61 TEA--NA-SIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVV 117
+A NA + EK+LESIP +VQGV S ++ QLEATTQFRKLLSIER PPI+EVI+AGVV
Sbjct: 61 LDAAQNAVAAEKRLESIPVLVQGVWSADTAGQLEATTQFRKLLSIERSPPIDEVIKAGVV 120
Query: 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQ 177
P+FVEFL RHDLPQLQFEAAWALTNIASGTSEHTRVVI+HGAVP FVQLL S SDDVREQ
Sbjct: 121 PKFVEFLGRHDLPQLQFEAAWALTNIASGTSEHTRVVIDHGAVPIFVQLLSSGSDDVREQ 180
Query: 178 AVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237
AVWALGNVAGDSPSCRDLVLSHGAL+PLL QLNEHSKLSMLRNATWTLSNFCRGKPP PF
Sbjct: 181 AVWALGNVAGDSPSCRDLVLSHGALVPLLGQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 240
Query: 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS 297
DQV+PAL L+ LI +DEEVLTDACWALSYLSDG N+KIQAVIEAGVCPRLVELLLH S
Sbjct: 241 DQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCPRLVELLLHQS 300
Query: 298 TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG 357
+VLVPALRTVGNIVTGDD QTQ VIDNQ LP LYQLLTQN+KKSIKKEACWTISNITAG
Sbjct: 301 PSVLVPALRTVGNIVTGDDAQTQFVIDNQVLPNLYQLLTQNHKKSIKKEACWTISNITAG 360
Query: 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPL 417
+R+QIQAVIEANII PLV+LLQHAEF++KKEA WAISNATSGG+ +QIQFLV+QGCIKPL
Sbjct: 361 NRAQIQAVIEANIILPLVHLLQHAEFDIKKEAGWAISNATSGGSHQQIQFLVTQGCIKPL 420
Query: 418 CDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSH 476
CDLL CPDPRIVTVCLEGL+NILK+GEADK+ G N+Y++ IDEC+GLDKIENLQSH
Sbjct: 421 CDLLTCPDPRIVTVCLEGLDNILKVGEADKDMGMNGGINIYAQAIDECEGLDKIENLQSH 480
Query: 477 DNNEIYEKAVKLLERYWVEEEDDEQNIP-----DGNNPEFNFGTGQPNIPSEGFKFS 528
DNNEIYEKAVK+LERYW EE+++++ P D N F FG QPN+P GFKF
Sbjct: 481 DNNEIYEKAVKMLERYWAEEDEEQEQNPQQQNGDANQHGFAFGANQPNVPPGGFKFG 537
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818271|emb|CAN64716.1| hypothetical protein VITISV_026717 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/535 (80%), Positives = 467/535 (87%), Gaps = 19/535 (3%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQP- 59
MSLRPGSRT+VRKKSYKTGVDA+EARRRREDNLVEIRKNKRED+LLKKRREGLILQSQ
Sbjct: 1 MSLRPGSRTDVRKKSYKTGVDAEEARRRREDNLVEIRKNKREDNLLKKRREGLILQSQQF 60
Query: 60 ---VTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGV 116
++ A +EK+LESI MVQGV S++ QLEATTQFRKLLSI GV
Sbjct: 61 SSDASQTTAVVEKRLESITLMVQGVWSDDPASQLEATTQFRKLLSI------------GV 108
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
VPRFVEFL RHDLPQLQFEAAWALTN+ASGTSEHTRVVIEHGAVP FVQLL SASDDVRE
Sbjct: 109 VPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSASDDVRE 168
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
QAVWALGNVAGDSPSCRDLVL HGALMPLL+QLNEHSKLSMLRNATWTLSNFCRGKPP P
Sbjct: 169 QAVWALGNVAGDSPSCRDLVLGHGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTP 228
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296
F+QV+PAL L+ LI +DEEVLTDACWALSYLSDG NDKIQAV+EAGVCPRLVELLLH
Sbjct: 229 FEQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNDKIQAVLEAGVCPRLVELLLHP 288
Query: 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
S TVL+PALRTVGNIVTGDD QTQ VIDNQ LP LYQLLTQN+KKSIKKEACWTISNITA
Sbjct: 289 SPTVLIPALRTVGNIVTGDDAQTQFVIDNQVLPCLYQLLTQNHKKSIKKEACWTISNITA 348
Query: 357 GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416
G++ QIQAVIEANII PLV LLQHAEF++KKEA+W ISNATSGG+ EQIQFLVSQGCIKP
Sbjct: 349 GNKGQIQAVIEANIILPLVNLLQHAEFDIKKEAAWGISNATSGGSHEQIQFLVSQGCIKP 408
Query: 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQS 475
LCDLL+CPDPRIVTVCLEGLENILK+GEADKE+G N+Y++MIDECDGLDKIE LQ+
Sbjct: 409 LCDLLMCPDPRIVTVCLEGLENILKVGEADKESGKNGGINLYAQMIDECDGLDKIELLQT 468
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIP--DGNNPEFNFGTGQPNIPSEGFKFS 528
HDNNEIYEK+VKLLERYW EE+++ QN+ DGN F FG+ QPN+P GFKF
Sbjct: 469 HDNNEIYEKSVKLLERYWAEEDEEVQNVQDGDGNQQGFGFGSSQPNLPPGGFKFG 523
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/529 (77%), Positives = 460/529 (86%), Gaps = 1/529 (0%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP +RTEVR+ YK VDA+E RRRREDN+VEIRK+KRE+SL KKRREGL Q P
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPA 60
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
+++EKKLES+PSMV GV S+NS LQLEATTQFRKLLSIER PPIEEVI++GVVPRF
Sbjct: 61 AAHASTVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
VEFL R D PQLQFEAAWALTNIASGTSE+T+VVI+HGAVP FV+LLGS SDDVREQAVW
Sbjct: 121 VEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVW 180
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
ALGNVAGDSP CRDLVL HGAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP PFDQV
Sbjct: 181 ALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQV 240
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+PAL AL+ L+ SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH S +V
Sbjct: 241 KPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
L+PALRTVGNIVTGDD QTQ +I++ LP L LLT N+KKSIKKEACWTISNITAG++
Sbjct: 301 LIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKE 360
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420
QIQAVIEA +IAPLV+LLQ AEF++KKEA+WAISNATSGGT EQI++LVSQGCIKPLCDL
Sbjct: 361 QIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDL 420
Query: 421 LVCPDPRIVTVCLEGLENILKIGEADKEAG-STTANVYSEMIDECDGLDKIENLQSHDNN 479
LVCPDPRIVTVCLEGLENILK+GEA+K G S N Y+++ID+ +GL+KIENLQSHDNN
Sbjct: 421 LVCPDPRIVTVCLEGLENILKVGEAEKTLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNN 480
Query: 480 EIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKFS 528
EIYEKAVK+LE YW+EEED+ DG+ P F FG ++PS GF FS
Sbjct: 481 EIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNFS 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|126572488|gb|ABO21639.1| importin alpha-like protein [Brassica napus] gi|126572504|gb|ABO21640.1| importin alpha-like protein [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/542 (76%), Positives = 473/542 (87%), Gaps = 14/542 (2%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQ-- 58
MSLRP +R E+RKK YKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREG++LQ Q
Sbjct: 1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQQQ 60
Query: 59 PVTEAN-------ASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEV 111
P+ A A++EK+LE IP MVQGV SE+ QLEATTQFRKLLSIER PPI+EV
Sbjct: 61 PLGAAGLDALQSAAAVEKRLEGIPMMVQGVYSEDPQAQLEATTQFRKLLSIERSPPIDEV 120
Query: 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSAS 171
I+AGV+PRFVEFL R D PQLQFEAAWALTN+ASGTS+HTRVVIEHGAVP FV+LL SAS
Sbjct: 121 IKAGVIPRFVEFLRRQDHPQLQFEAAWALTNVASGTSDHTRVVIEHGAVPIFVELLSSAS 180
Query: 172 DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231
DDVREQAVWALGNVAGDSP+CR+LVLS GAL PLL+QLNE+SKLSMLRNATWTLSNFCRG
Sbjct: 181 DDVREQAVWALGNVAGDSPNCRNLVLSCGALAPLLSQLNENSKLSMLRNATWTLSNFCRG 240
Query: 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 291
KPP PF++V+PAL L+ LI+ +DEEVLTDACWALSYLSDG NDKIQAVI+AGVCPRLVE
Sbjct: 241 KPPTPFEEVKPALPVLRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIQAGVCPRLVE 300
Query: 292 LLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351
LL H S TVL+PALRTVGNIVTGDD+QTQ +ID+ LP LY LLTQN+KKSIKKEACWTI
Sbjct: 301 LLSHPSPTVLIPALRTVGNIVTGDDSQTQFIIDSGVLPHLYNLLTQNHKKSIKKEACWTI 360
Query: 352 SNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411
SNITAG++ QI+AV+ A I+ PLV+LLQ+AEF++KKEA+WAISNATSGG+ EQIQ+LV+Q
Sbjct: 361 SNITAGNKVQIEAVVGAGIVLPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVAQ 420
Query: 412 GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAG-STTANVYSEMIDECDGLDKI 470
GCIKPLCDLL+CPDPRIVTVCLEGLENILKIGEADKE G + N+Y+++++E DGLDKI
Sbjct: 421 GCIKPLCDLLICPDPRIVTVCLEGLENILKIGEADKEMGLNGGVNLYAQIVEESDGLDKI 480
Query: 471 ENLQSHDNNEIYEKAVKLLERYWVEEEDDEQNIPDG--NNPE--FNFGTGQPNIPSEGFK 526
ENLQSHDNNEIYEKAVK+LERYW EEE+DEQ +PDG NP+ F+FG Q P GFK
Sbjct: 481 ENLQSHDNNEIYEKAVKILERYWAEEEEDEQILPDGVNENPQQGFSFGNNQTAAPPGGFK 540
Query: 527 FS 528
F+
Sbjct: 541 FA 542
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/528 (76%), Positives = 458/528 (86%), Gaps = 1/528 (0%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP +RTEVR+ YK VDADE RRRREDN+VEIRKN+RE+SL KKRREGL Q+ P
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQAIPA 60
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
+++ EKKLE +PSMV GV SE+ LQLEATTQFRKLLSIER PPIEEVI+AGVVPRF
Sbjct: 61 ALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRF 120
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
V+FL R D PQLQFEAAWALTNIASGTSE+T+VVI+HGAVP FVQLLGS SDDVREQAVW
Sbjct: 121 VQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAVW 180
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
ALGNVAGDSP CRDLVL HGAL+PLLAQLNE++KLSMLRNATWTLSNFCRGKP PFDQV
Sbjct: 181 ALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQV 240
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+PAL AL LI S+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL+ELLLH S +V
Sbjct: 241 KPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPSV 300
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
L+PALRTVGNIVTGDD QTQC+I++Q LP L LLT NYKKSIKKEACWTISNITAG++
Sbjct: 301 LIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNKE 360
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420
QIQAVIEAN+I PLV+LLQ+AEF++KKE++WAISNATSGGT EQI++LVSQGCIKPLCDL
Sbjct: 361 QIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCDL 420
Query: 421 LVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSHDNN 479
L+CPDPRIVTVCLEGLENILK+GEADK T N+Y++MID+ +GL+KIENLQSHDN+
Sbjct: 421 LICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDNS 480
Query: 480 EIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
EIYEKAVK+LE YW+EE+D+ D + F FG P +PS GF F
Sbjct: 481 EIYEKAVKILETYWLEEDDETMPPGDASQSGFQFGGDAPAVPSGGFNF 528
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843718|ref|XP_002889740.1| hypothetical protein ARALYDRAFT_888168 [Arabidopsis lyrata subsp. lyrata] gi|297335582|gb|EFH65999.1| hypothetical protein ARALYDRAFT_888168 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/539 (76%), Positives = 469/539 (87%), Gaps = 12/539 (2%)
Query: 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP +R E+RKK YKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREG++LQ QP+
Sbjct: 1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQPL 60
Query: 61 ------TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA 114
+ A++EK+LE IP MVQGV S++ QLEATTQFRKLLSIER PPI+EVI+A
Sbjct: 61 GAGLDGPQNAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKA 120
Query: 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDV 174
GVVPRFVEFL R D PQLQFEAAWALTN+ASGTS+HTRVVIE GAVP FVQLL SASDDV
Sbjct: 121 GVVPRFVEFLGRQDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVQLLSSASDDV 180
Query: 175 REQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234
REQAVWALGNVAGDSP+CR+LVL++GAL PLLAQLNE+SKLSMLRNATWTLSNFCRGKPP
Sbjct: 181 REQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPP 240
Query: 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294
PF+QV+PAL L+ LI+ +DEEVLTDACWALSYLSDG N+KIQAVI+AGVCPRLVELL
Sbjct: 241 TPFEQVKPALPVLRQLIYLNDEEVLTDACWALSYLSDGPNNKIQAVIQAGVCPRLVELLG 300
Query: 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354
H S TVL+PALRTVGNIVTGDD+QTQ +ID+ LP LY LLTQN+KKSIKKEACWTISNI
Sbjct: 301 HQSPTVLIPALRTVGNIVTGDDSQTQFIIDSGVLPHLYNLLTQNHKKSIKKEACWTISNI 360
Query: 355 TAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCI 414
TAG++ QI+AV+ A II PLV+LLQ+AEF++KKEA+WAISNATSGG+ EQIQ+LV+QGCI
Sbjct: 361 TAGNKVQIEAVVAAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCI 420
Query: 415 KPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAG-STTANVYSEMIDECDGLDKIENL 473
KPLCDLL+CPDPRIVTVCLEGLENILK+GEADKE G + N+Y+++I+E DGLDK+ENL
Sbjct: 421 KPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNGGVNLYAQIIEESDGLDKVENL 480
Query: 474 QSHDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPE----FNFGTGQPNIPSEGFKFS 528
QSHDNNEIYEKAVK+LERYW EEE +EQ + DG N FNFG QP P GFKF
Sbjct: 481 QSHDNNEIYEKAVKILERYWAEEE-EEQILQDGGNENSQQAFNFGNNQPAAPPGGFKFG 538
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | ||||||
| TAIR|locus:2195351 | 538 | IMPA-4 "AT1G09270" [Arabidopsi | 0.996 | 0.977 | 0.742 | 1.7e-210 | |
| TAIR|locus:2083313 | 532 | IMPA-1 "importin alpha isoform | 0.998 | 0.990 | 0.722 | 1.6e-203 | |
| TAIR|locus:505006475 | 535 | IMPA-2 "importin alpha isoform | 0.998 | 0.985 | 0.713 | 4.7e-199 | |
| TAIR|locus:2132238 | 531 | MOS6 "MODIFIER OF SNC1, 6" [Ar | 0.994 | 0.988 | 0.663 | 1.4e-183 | |
| TAIR|locus:2196140 | 539 | IMPA-6 "importin alpha isoform | 0.996 | 0.975 | 0.656 | 1.1e-181 | |
| TAIR|locus:2155929 | 519 | IMPA-5 "importin alpha isoform | 0.964 | 0.980 | 0.597 | 3e-156 | |
| DICTYBASE|DDB_G0272318 | 516 | DDB_G0272318 "putative importi | 0.956 | 0.978 | 0.589 | 9.8e-151 | |
| UNIPROTKB|G4MZS0 | 551 | MGG_15072 "Importin subunit al | 0.931 | 0.892 | 0.585 | 1.2e-147 | |
| ASPGD|ASPL0000045550 | 553 | kapA [Emericella nidulans (tax | 0.924 | 0.882 | 0.582 | 1.2e-143 | |
| TAIR|locus:2078122 | 528 | IMPA-7 "importin alpha isoform | 0.922 | 0.922 | 0.579 | 6.8e-143 |
| TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2035 (721.4 bits), Expect = 1.7e-210, P = 1.7e-210
Identities = 401/540 (74%), Positives = 460/540 (85%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGLILQSQ-P 59
MSLRP +R E+RKK YKTGV NLVEIRKNKREDSLLKKRREG++LQ Q P
Sbjct: 1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60
Query: 60 V------TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIR 113
+ + A++EK+LE IP MVQGV S++ QLEATTQFRKLLSIER PPI+EVI+
Sbjct: 61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120
Query: 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDD 173
AGV+PRFVEFL RHD PQLQFEAAWALTN+ASGTS+HTRVVIE GAVP FV+LL SASDD
Sbjct: 121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180
Query: 174 VREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233
VREQAVWALGNVAGDSP+CR+LVL++GAL PLLAQLNE+SKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240
Query: 234 PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293
P PF+QV+PAL L+ LI+ +DEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL
Sbjct: 241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300
Query: 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353
H S TVL+PALRTVGNIVTGDD+QTQ +I++ LP LY LLTQN+KKSIKKEACWTISN
Sbjct: 301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360
Query: 354 ITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGC 413
ITAG++ QI+AV+ A II PLV+LLQ+AEF++KKEA+WAISNATSGG+ EQIQ+LV+QGC
Sbjct: 361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGC 420
Query: 414 IKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAG-STTANVYSEMIDECDGLDKIEN 472
IKPLCDLL+CPDPRIVTVCLEGLENILK+GEADKE G ++ N+Y+++I+E DGLDK+EN
Sbjct: 421 IKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVEN 480
Query: 473 LQSHDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPE----FNFGTGQPNIPSEGFKFS 528
LQSHDNNEIYEKAVK+LERYW EEE+ EQ + DG N FNFG P P GFKF+
Sbjct: 481 LQSHDNNEIYEKAVKILERYWAEEEE-EQILQDGGNDNSQQAFNFGNN-PAAPVGGFKFA 538
|
|
| TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1969 (698.2 bits), Expect = 1.6e-203, P = 1.6e-203
Identities = 385/533 (72%), Positives = 442/533 (82%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGL-ILQSQP 59
MSLRP ++TEVR+ YK V N+VEIRK+KRE+SL+KKRREG+ LQ P
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60
Query: 60 VTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPR 119
A AS++KKL+S+ MV GV S++ LQLE+TTQFRKLLSIER PPIEEVI AGVVPR
Sbjct: 61 SASA-ASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119
Query: 120 FVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAV 179
FVEFL + D P +QFEAAWALTNIASGTS+HT+VVI+H AVP FVQLL S SDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ 239
WALGNVAGDSP CRDLVL GAL+PLL QLNEH+KLSMLRNATWTLSNFCRGKP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239
Query: 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT 299
V+PAL AL+ LI S DEEVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELLLH S +
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299
Query: 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359
VL+PALRTVGNIVTGDD QTQCVI++ LP L LLTQN+KKSIKKEACWTISNITAG++
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359
Query: 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCD 419
QIQ V+EAN+I+PLV LLQ+AEF++KKEA+WAISNATSGG+ +QI++LV QGCIKPLCD
Sbjct: 360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419
Query: 420 LLVCPDPRIVTVCLEGLENILKIGEADKEAGST-TANVYSEMIDECDGLDKIENLQSHDN 478
LLVCPDPRI+TVCLEGLENILK+GEA+K G T N Y+++ID+ +GL+KIENLQSHDN
Sbjct: 420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479
Query: 479 NEIYEKAVKLLERYWVEEEDDEQNIP---DGNNPEFNFGTGQPNIPSEGFKFS 528
NEIYEKAVK+LE YW+EEEDDE P DG+ F FG Q +PS GF FS
Sbjct: 480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS 532
|
|
| TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 381/534 (71%), Positives = 437/534 (81%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP ++TEVR+ YK V N+VEIRK+KRE+SL KKRREGL P
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60
Query: 61 -----TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAG 115
A++++EKKLES+P+MV GV S++ LQLEATTQFRKLLSIER PPIEEVI AG
Sbjct: 61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120
Query: 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
VVPRFVEFL R D PQLQFEAAWALTNIASGTSE+T+VVIEHGAVP FVQLL S SDDVR
Sbjct: 121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180
Query: 176 EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235
EQAVWALGNVAGDSP CRDLVL GAL+PLL+QLNEH+KLSMLRNATWTLSNFCRGKP
Sbjct: 181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
PFDQVRPAL AL+ LI S+DEEVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL H
Sbjct: 241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
S +VL+PALR++GNIVTGDD QTQCVI + L L LLT N+KKSIKKEACWTISNIT
Sbjct: 301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+R QIQAV EA +I PLV LLQ+AEF++KKEA+WAISNATSGG+ +QI+++V QG +K
Sbjct: 361 AGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVK 420
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGST-TANVYSEMIDECDGLDKIENLQ 474
PLCDLLVCPDPRI+TVCLEGLENILK+GEA+K G+T N Y+++ID+ +GL+KIENLQ
Sbjct: 421 PLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQ 480
Query: 475 SHDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPN-IPSEGFKF 527
SHDN+EIYEKAVK+LE YW+EEED+ D + F FG G +P GF F
Sbjct: 481 SHDNSEIYEKAVKILETYWLEEEDETLPPGDPSAQGFQFGGGNDAAVPPGGFNF 534
|
|
| TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1781 (632.0 bits), Expect = 1.4e-183, P = 1.4e-183
Identities = 353/532 (66%), Positives = 420/532 (78%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKR-REGLILQSQP 59
MSLRP ++TEVR+ YK V NLVEIRKNKRE++L KKR + S
Sbjct: 1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60
Query: 60 -VTEANASIEKKL-ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVV 117
TE + S +L +++P+MV G+ SE+S QLEAT RKLLSIE+ PPI EV+++GVV
Sbjct: 61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120
Query: 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQ 177
PR V+FL R D P+LQFEAAWALTNIASGTSE+T V+IE GAVP F+QLL SAS+DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180
Query: 178 AVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237
AVWALGNVAGDSP CRDLVLS+GA+ PLL+Q NE++KLSMLRNATWTLSNFCRGKPP F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240
Query: 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS 297
+Q +PAL L+ L+ S DEEVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL HSS
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300
Query: 298 TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG 357
+VL+PALRT+GNIVTGDD QTQ V+D Q LP L LL NYKKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360
Query: 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPL 417
+ QIQAVI+A II LV++LQ AEFEVKKEA+W ISNATSGGT +QI+F+VSQGCIKPL
Sbjct: 361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420
Query: 418 CDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSH 476
CDLL CPD ++VTVCLE LENIL +GEA+K G T N+Y++MIDE +GL+KIENLQSH
Sbjct: 421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSH 480
Query: 477 DNNEIYEKAVKLLERYWVEEEDDEQNIPDGNN-PEFNFGTGQPNIPSEGFKF 527
DNN+IY+KAVK+LE +W E+ ++E N D N+ P+ F G N+P F F
Sbjct: 481 DNNDIYDKAVKILETFWTEDNEEEGN--DENHAPQSGFQFGSTNVPPGQFNF 530
|
|
| TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1763 (625.7 bits), Expect = 1.1e-181, P = 1.1e-181
Identities = 354/539 (65%), Positives = 420/539 (77%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGL--ILQSQ 58
MS +P ++TEVR+ YK V N+VEIRKNKRE++L KKRREG + SQ
Sbjct: 1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60
Query: 59 PVTEANASI--EKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGV 116
P + ++S+ E +LE+I M+ GV+SE+ LQLEAT FR+LLSIER PPI EV+++GV
Sbjct: 61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
VP V+FL R D QLQFEAAWALTNIASGTSE+TRV+I+ GAVP FV+LL SAS++VRE
Sbjct: 121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
QAVWALGNVAGDSP CRD VLS A+M LLAQ +EHSKLSMLRNATWTLSNFCRGKP
Sbjct: 181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240
Query: 237 FDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
F+Q + AL AL+ L+ S+DEEVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL H
Sbjct: 241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300
Query: 296 SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
S +VL+PALRT+GNIVTGDD QTQ VI +Q LP L LL YKKSIKKEACWTISNIT
Sbjct: 301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360
Query: 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415
AG+ SQIQ V +A II PL+ LL+ EFE+KKEA WAISNATSGG +QI+FLVSQGCI+
Sbjct: 361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIR 420
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGST-TANVYSEMIDECDGLDKIENLQ 474
PLCDLL CPDPR+VTV LEGLENILK+GEA+K G+T N+Y++MI++ DGLDKIENLQ
Sbjct: 421 PLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQ 480
Query: 475 SHDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPE------FNFGTGQPNIPSEGFKF 527
SHDNNEIYEKAVK+LE YW + D+E++I + PE F FG N P+ GF F
Sbjct: 481 SHDNNEIYEKAVKILESYWAAD-DEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNF 538
|
|
| TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1523 (541.2 bits), Expect = 3.0e-156, P = 3.0e-156
Identities = 310/519 (59%), Positives = 380/519 (73%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP ++TE+R+ YK V LVEIRK+KR ++L+KKRR ++ +
Sbjct: 1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
+N E LE I +M+ GV S++ LQLE TT+FR +LS +R PP + VI++GVVPRF
Sbjct: 61 I-SNDPFESLLE-IANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRF 118
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
VEFL + D P+LQFEAAWALTNIASG SEHT+VVI+HG VP FVQLL S DDVREQA+W
Sbjct: 119 VEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIW 178
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
LGNVAGDS CRD VL+ GA +PLL QLN H+ LS+LRNATWTLSNF RGKP PFD V
Sbjct: 179 GLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLV 238
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+ L L+ L++S DE+VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL H+S V
Sbjct: 239 KHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVV 298
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
LVPALR +GNIV+G+ QT CVI+ LP L LLTQN+ + I++EACWTISNITAG
Sbjct: 299 LVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEE 358
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420
QIQ+VI+AN+I LV L QHAEF++KKEA WAISNA+ GG+ QI++LV Q CIK LCD+
Sbjct: 359 QIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDI 418
Query: 421 LVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNE 480
LVCPD RI+ V L GLE IL GE DK N YS+MI++ +GL+KIENLQ H NNE
Sbjct: 419 LVCPDLRIILVSLGGLEMILIAGEVDKNLRDV--NCYSQMIEDAEGLEKIENLQHHGNNE 476
Query: 481 IYEKAVKLLERYWVEEED-----DEQNIPDG-NNPEFNF 513
IYEKAVK+L+ Y + EED +E DG ++PEF F
Sbjct: 477 IYEKAVKILQTYGLVEEDGRLVEEEDEGGDGCSHPEFQF 515
|
|
| DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1471 (522.9 bits), Expect = 9.8e-151, P = 9.8e-151
Identities = 304/516 (58%), Positives = 379/516 (73%)
Query: 7 SRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGLILQSQPVTEANAS 66
S+ E RK YK + + IRKNKRE+SLLKKR + + S PV + ++
Sbjct: 4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQA-VPGSTPV-KVDSL 61
Query: 67 IEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR 126
I ++LE +PS+V + SEN L L++TT FRKLLSIE+ PPIEEVI+ G+VPR V+FL
Sbjct: 62 INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121
Query: 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
D PQLQFEAAWALTNIASGT E TRVVIE+GA+ FV LL S DDVREQAVWALGN+A
Sbjct: 122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPAPFDQVRPAL 244
GDS CRDLVLSH AL PLL+ L + K+SM+RNATWTLSNFCRGKP PF+ VR +L
Sbjct: 182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241
Query: 245 AALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304
L LI+ DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELL H + V PA
Sbjct: 242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301
Query: 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364
LRT+GNIVTGDD QTQ V+ Q L L LL Q+ K++I+KEACWTISNITAG ++QIQ
Sbjct: 302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360
Query: 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424
VI+ANII LVYLL +AEFE++KEA+WAISNATS GT +QI FLVSQGC+KPLCDLL
Sbjct: 361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420
Query: 425 DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484
DPRI+ V LEG+ENIL G+ KEA T N Y ++I++ DGL KI +LQ H N + +EK
Sbjct: 421 DPRIINVALEGIENILVAGK--KEAQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEK 478
Query: 485 AVKLLERYWVEEEDDEQNI-PDGNNPEFNFGTGQPN 519
+++ Y +E++DE ++ P+G++ F+F + Q N
Sbjct: 479 VSRIISTYLEDEQEDEGDLMPEGSS--FSF-SNQTN 511
|
|
| UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 299/511 (58%), Positives = 377/511 (73%)
Query: 34 VEIRKNKREDSLLKKR-------REGLILQSQPVTEAN-ASIEKKL-ESIPSMVQGVLSE 84
VEIRK KRE++L K+R R G L + P ++ + A E +L E +P MVQGV SE
Sbjct: 34 VEIRKAKREENLAKRRGIGTGADRPGASLGAAPDSDDDTAPTESQLNEDLPQMVQGVFSE 93
Query: 85 NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFL-DRHDLPQLQFEAAWALTNI 143
+ Q++ATT+FRKLLS ER PPIEEVI+ GVV RFVEFL H L +QFEAAWALTNI
Sbjct: 94 SIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFLRSPHTL--VQFEAAWALTNI 151
Query: 144 ASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALM 203
ASG++ T+VVIE GAVP FV+LLGS DVREQAVWALGN+AGDSP CRD VLS GAL
Sbjct: 152 ASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRDYVLSCGALK 211
Query: 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDA 262
PLL L + KLSMLRNATWTLSNFCRGK P P + + PAL L L++S D+EVL DA
Sbjct: 212 PLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYSLDDEVLIDA 271
Query: 263 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322
CWA+SYLSDG+NDKIQAVIEAG+ RLVELL+H+ST+V PALR+VGNIVTGDD QTQ +
Sbjct: 272 CWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQTQVI 331
Query: 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE 382
I+ LP L LL N K I+KEACWTISNITAG+ +QIQ+V++ANII PL++LL + +
Sbjct: 332 INCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANIIPPLIHLLSNGD 390
Query: 383 FEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440
+ +KEA WAISNATSGG + +QI++LV+QGCIKPLCDLL CPD +I+ V L+GLENIL
Sbjct: 391 LKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKIIQVALDGLENIL 450
Query: 441 KIGEADKEA---GSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497
K+G+ DK+A G + N Y+ I+EC G++KI Q++ N EIY KA ++E+Y+ +++
Sbjct: 451 KVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKAFNIIEKYFSDDD 510
Query: 498 DDEQNIPDGNNPEFNFGTGQPNIPSEGFKFS 528
++ + P FG G P+ + +FS
Sbjct: 511 ENADDAAPAQGPNGTFGFGNPSGGQQQNQFS 541
|
|
| ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1404 (499.3 bits), Expect = 1.2e-143, P = 1.2e-143
Identities = 300/515 (58%), Positives = 374/515 (72%)
Query: 34 VEIRKNKREDSLLKKR----REGLI------LQSQPVTEANASIEKKLE-SIPSMVQGVL 82
VEIRK KRE++L K+R R+G I ++ EA+A IE +L +P MV+GV
Sbjct: 34 VEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAAESDDEASA-IESELNVELPEMVKGVF 92
Query: 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFL-DRHDLPQLQFEAAWALT 141
S+ Q++ATT+FRKLLS ER PPIE VI GVV RFVEFL H L +QFEAAWALT
Sbjct: 93 SDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFLRSPHTL--VQFEAAWALT 150
Query: 142 NIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGA 201
NIASG+++ T+VVIE GAVP FV+LL S DVREQAVWALGN+AGDSP CRD VL+ GA
Sbjct: 151 NIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRDFVLNAGA 210
Query: 202 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLT 260
L PLL +N+ K+SMLRNATWTLSNFCRGK P P ++ + PAL L LI+ D+EVL
Sbjct: 211 LRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYMLDDEVLI 270
Query: 261 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320
DACWA+SYLSDG N+KIQAVIEAG+ RLVELL+H+ST+V PALR+VGNIVTGDD QTQ
Sbjct: 271 DACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQTQ 330
Query: 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH 380
+I+ LP L LL+ K I+KEACWTISNITAG+ SQIQ+VI+A II PLV+LL +
Sbjct: 331 VIINCGALPALLSLLSST-KDGIRKEACWTISNITAGNSSQIQSVIDAGIIPPLVHLLAN 389
Query: 381 AEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438
+F+ +KEA WAISNATSGG + +QI++LV+QGCIKPLCDLL CPD +I+ V L+GLEN
Sbjct: 390 GDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQVALDGLEN 449
Query: 439 ILKIGEADKEAGSTTANV--YSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEE 496
ILK+GE DKEAG A+V Y+ I+E G++KI + Q++ N EIY KA ++E+Y+ +E
Sbjct: 450 ILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEKYFSDE 509
Query: 497 E----DDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527
+ D ++ P F G Q P GF F
Sbjct: 510 DEAAGDIDELAPQQTQTGFTLGATQQQ-PG-GFSF 542
|
|
| TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
Identities = 294/507 (57%), Positives = 363/507 (71%)
Query: 3 LRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGLILQSQPVTE 62
++ G VR+ YK V ++VEIRK KRE+SLLKKRRE L P +
Sbjct: 1 MKGGETMSVRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREAL-----PHSP 55
Query: 63 ANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP-IEEVIRAGVVPRFV 121
+ S+++KL S + S+ L +EATTQ R LL E +EEVI+AG+VPRFV
Sbjct: 56 SADSLDQKLISC------IWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFV 109
Query: 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWA 181
EFL D PQLQFEAAWALTNIASGTSE+T VVI+HGAV V+LL S D VREQ VWA
Sbjct: 110 EFLTWDDSPQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWA 169
Query: 182 LGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241
LGN++GDSP CRD+VL H AL LL QLN +KLSML NA WTLSN CRGKP PFDQV
Sbjct: 170 LGNISGDSPRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVS 229
Query: 242 PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVL 301
AL AL LI D+E+L CWAL YLSDG+N+KIQAVIEA VC RL+ L +H S +V+
Sbjct: 230 AALPALAQLIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVI 289
Query: 302 VPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ 361
PALRT+GNIVTG+D+QTQ +ID Q LP L LL +Y K+I+KEACWT+SNITAG +SQ
Sbjct: 290 TPALRTIGNIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQ 349
Query: 362 IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL 421
IQAV +A+I LV LLQ++E +VKKEA+WAI NA +GG+ +QI FLV Q CIKPLCDLL
Sbjct: 350 IQAVFDADICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLL 409
Query: 422 VCPDPRIVTVCLEGLENILKIGE--ADKEA-G-----STTANVYSEMIDECDGLDKIENL 473
C D ++V VCLE L+ ILK+GE + + A G T N ++++I+E +GL+KIE L
Sbjct: 410 TCSDTQLVMVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGL 469
Query: 474 QSHDNNEIYEKAVKLLERYWVEEEDDE 500
QSH+NN+IYE AVK+LE YW+EEE++E
Sbjct: 470 QSHENNDIYETAVKILETYWMEEEEEE 496
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O35345 | IMA7_MOUSE | No assigned EC number | 0.5545 | 0.9867 | 0.9720 | yes | no |
| Q19969 | IMA3_CAEEL | No assigned EC number | 0.4305 | 0.9356 | 0.9610 | yes | no |
| Q5RBV0 | IMA7_PONAB | No assigned EC number | 0.5526 | 0.9867 | 0.9720 | yes | no |
| Q02821 | IMA1_YEAST | No assigned EC number | 0.5315 | 0.9507 | 0.9261 | yes | no |
| Q96321 | IMA1_ARATH | No assigned EC number | 0.7392 | 0.9981 | 0.9906 | no | no |
| O94374 | IMA2_SCHPO | No assigned EC number | 0.5217 | 0.9678 | 0.9480 | yes | no |
| Q76P29 | IMAB_DICDI | No assigned EC number | 0.6023 | 0.9564 | 0.9786 | yes | no |
| O22478 | IMA_SOLLC | No assigned EC number | 0.7490 | 0.9943 | 0.9962 | N/A | no |
| O60684 | IMA7_HUMAN | No assigned EC number | 0.5526 | 0.9867 | 0.9720 | yes | no |
| Q0V7M0 | IMA7_BOVIN | No assigned EC number | 0.5526 | 0.9867 | 0.9720 | yes | no |
| Q71VM4 | IMA1A_ORYSJ | No assigned EC number | 0.7533 | 0.9772 | 0.9809 | no | no |
| Q9SLX0 | IMA1B_ORYSJ | No assigned EC number | 0.7383 | 0.9943 | 0.9831 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 528 | |||
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.0 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-35 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-28 | |
| pfam01749 | 97 | pfam01749, IBB, Importin beta binding domain | 3e-27 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-25 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-22 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-22 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-21 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 1e-09 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-08 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 3e-08 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 3e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 3e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 3e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 5e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 9e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 1e-05 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 1e-05 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 5e-05 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 5e-05 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 1e-04 | |
| COG1413 | 335 | COG1413, COG1413, FOG: HEAT repeat [Energy product | 3e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 5e-04 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 586 bits (1512), Expect = 0.0
Identities = 273/515 (53%), Positives = 352/515 (68%), Gaps = 10/515 (1%)
Query: 10 EVRKKSY--KTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASI 67
E R+ ++ K ADE RRRRE+ VE+RK KRE+ L K+R L S+ + +
Sbjct: 8 EARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRR--NLADVSEEAESSFIPM 65
Query: 68 EKKLES-IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR 126
E++ S +P + Q + S++ QL+A +FRKLLS E PPI+ VI AGVVPRFVEF+D
Sbjct: 66 EQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE 125
Query: 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
LQFEAAWALTNIASGT++ T+VV++ GAVP F+QLL S DDVREQAVWALGN+A
Sbjct: 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA 185
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPAPFDQ-VRPAL 244
GDS CRD VL GAL PLL L +SMLRNATWTLSN CRGK P P + AL
Sbjct: 186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL 245
Query: 245 AALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304
L LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+ RLVELL H S + PA
Sbjct: 246 PILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305
Query: 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364
LR+VGNIVTG D QTQ +I+ L LL+ + K++I+KEACWTISNITAG+ QIQA
Sbjct: 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQA 364
Query: 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLV 422
VI+AN+I PL++LL AE+++KKEA WAISNATSGG + I++LVSQG IKPLCDLL
Sbjct: 365 VIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424
Query: 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482
D +I+ V L+ +ENILK+GE D+ N+Y+ +++ G+D I LQ N IY
Sbjct: 425 VVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIY 484
Query: 483 EKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQ 517
+KA ++E+++ EE+ ++ P+ F FG+
Sbjct: 485 DKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNV 519
|
Length = 526 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 9e-35
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 109 EEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG 168
E VI+AG +P V L +Q EAAWAL+N+++G +++ + V+E G +P VQLL
Sbjct: 1 EAVIQAGGLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59
Query: 169 SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228
S ++V + A+WAL N+A + +VL G + P L L + S + +NAT LSN
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNL 118
Query: 229 CR 230
Sbjct: 119 AS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-28
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
L AL L+ SSDE V +A WALS LS G ND IQAV+EAG P LV+LL V+
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
AL + N+ G + V++ G+P+L LL + + I+K A +SN+ +
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-27
Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 4 RPGSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGL----ILQSQ 58
++ E R+KSYK G DA+E RRRRE+ VE+RKNKRE+ LLK+R GL + +
Sbjct: 1 ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60
Query: 59 PVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQ 95
+ ++ ++ +P MVQGV S++ QL AT
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97
|
This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 7e-25
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ 337
+AVI+AG P LV LL S V A + N+ G++ Q V++ GLP L QLL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 338 NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397
+ + K A W + N+ AG V+EA + LV LL + +++K A+ A+SN
Sbjct: 61 E-DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
Query: 398 S 398
S
Sbjct: 120 S 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-22
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 322 VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA 381
VI GLP L LL+ + +++++EA W +SN++AG+ IQAV+EA + LV LL+
Sbjct: 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 382 EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
+ EV K A WA+ N +G + ++ G + L +LL + I L N+
Sbjct: 62 DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-22
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422
+AVI+A + LV LL ++ V++EA+WA+SN ++G + IQ +V G + L LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59
Query: 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482
D +V L L N+ G D + ++ E G+ K+ NL N +I
Sbjct: 60 SEDEEVVKAALWALRNLAA-GPEDNK----------LIVLEAGGVPKLVNLLDSSNEDIQ 108
Query: 483 EKAVKLLERYW 493
+ A L
Sbjct: 109 KNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 8e-21
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P++V + S + +Q EA L S I+ V+ AG +P V+ L D ++
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
A WAL N+A+G ++ +V+E G VPK V LL S+++D+++ A AL N+A
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-09
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 147 TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
+ E+ + VIE GAVP VQLL S ++V+E+A WAL N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 147 TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
E+ + V++ G +P V+LL S ++V ++A WAL N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398
S QAVIEA + PLV LL + EV++EA+WA+SN +
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-08
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNV 185
+++ AA AL +A G E R + +P + LL D+VRE A WALG +
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398
QAV++A + LV LL+ + EV KEA+WA+SN +S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 106 PPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145
+ VI AG VP V+ L ++Q EAAWAL+N+A+
Sbjct: 3 ENKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313
+ + QAVIEAG P LV+LL V A + N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 106 PPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145
+ V+ AG +P VE L D ++ EAAWAL+N++S
Sbjct: 3 ENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
Q VI+ +P L QLL+ + +++EA W +SN+ A
Sbjct: 4 NKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
++ QAV++AG P LVELL V+ A + N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 403 EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
E Q +V G + L +LL D +V L N+
Sbjct: 3 ENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
+ E Q ++ G + PL LL PD + L N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 315 DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
DD Q V+D GLP L +LL ++ + KEA W +SN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 189 SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230
SP + V+ GA+ P L QL + A W LSN
Sbjct: 1 SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-05
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 174 VREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228
VRE A ALG +AG P L + L+P L L + + A W L
Sbjct: 3 VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 22/110 (20%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
+ +E L P+++ AA AL + A+P ++LL +VR
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELGDPE-----------ALPALLELLKDPDPEVRR 49
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226
A ALG + AL LL L + + A L+
Sbjct: 50 AAAEALGKLGDPE-----------ALPALLELLQDDDDAVVRAAAASALA 88
|
This family includes multiple HEAT repeats. Length = 88 |
| >gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 61/303 (20%), Positives = 93/303 (30%), Gaps = 72/303 (23%)
Query: 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
++ L+ DL ++ AA AL + S AVP +LL VR
Sbjct: 44 AADELLKLLEDEDLL-VRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVR 91
Query: 176 EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235
+ A ALG + P A+ PL+ L + A L
Sbjct: 92 DAAADALGEL--GDPE---------AVPPLVELLENDENEGVRAAAARALGKL------G 134
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPRLVEL 292
+ P L ALQ S L A + + +A+ E G P L+EL
Sbjct: 135 DERALDPLLEALQDEDSGSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIEL 188
Query: 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352
L V A +G + +N L + ++K A +
Sbjct: 189 LEDEDADVRRAAASALGQL----------GSENVEAADLLVKALSDESLEVRKAALLALG 238
Query: 353 NITAGSRSQIQAVIEA----------------------NIIAPLVYLLQHAEFEVKKEAS 390
I G + A+ +A PL+ LL V+ EA+
Sbjct: 239 EI--GDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAA 296
Query: 391 WAI 393
A+
Sbjct: 297 LAL 299
|
Length = 335 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSD 271
A+ L L+ S DEEV +A WALS L+
Sbjct: 13 AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.97 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.95 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.94 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.87 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.81 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.79 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.78 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.78 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.77 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.76 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.73 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.7 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.69 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.69 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.67 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.65 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.65 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.63 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.62 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.62 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.61 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.6 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.59 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.57 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.52 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.5 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.5 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.47 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.47 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.46 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.46 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.43 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.41 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.38 | |
| PF01749 | 97 | IBB: Importin beta binding domain; InterPro: IPR00 | 99.38 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.36 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.35 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.33 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.31 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 99.16 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 99.14 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 99.14 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 99.11 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 99.1 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.08 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.04 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.02 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.02 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 99.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.99 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.97 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.96 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.96 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.92 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.9 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.86 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.82 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.8 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.77 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.76 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.71 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.71 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.7 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.7 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.63 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.62 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.6 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.58 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.57 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.57 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.56 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.52 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.51 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.51 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.44 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.44 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.42 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.42 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.39 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.39 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 98.39 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.38 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.34 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.29 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.28 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.27 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.27 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.25 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.24 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 98.18 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.17 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 98.16 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 98.11 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.08 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.07 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.03 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.99 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.97 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.97 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.96 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.93 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.92 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.9 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.9 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.89 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.83 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.82 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.72 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.71 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.66 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 97.66 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.64 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 97.61 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.58 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.55 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.5 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.5 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.47 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 97.45 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.42 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.42 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.41 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 97.38 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.35 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 97.33 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 97.32 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 97.3 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.25 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.21 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.21 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.15 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.15 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.13 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 97.13 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.1 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.01 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.01 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 97.01 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.95 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.94 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.9 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 96.84 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 96.75 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 96.72 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.71 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.7 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 96.69 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 96.65 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 96.65 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.65 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.63 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.59 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.59 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.58 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.55 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 96.49 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 96.33 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 96.3 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 96.25 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.14 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.14 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 96.11 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 96.1 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.09 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 96.07 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 95.99 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 95.98 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.97 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.97 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 95.95 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 95.92 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.82 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.65 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.63 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.6 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.56 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 95.49 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 95.43 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 95.34 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 95.32 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 95.3 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 95.27 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 95.27 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 95.19 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 95.18 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 95.16 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 95.11 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 95.08 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 95.06 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 94.99 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 94.99 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 94.98 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 94.96 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.9 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 94.89 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 94.86 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 94.69 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.68 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 94.62 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 94.51 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 94.48 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 94.28 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 94.16 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.08 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 93.96 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 93.89 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 93.79 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 93.65 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 93.57 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.56 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 93.48 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 93.4 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 93.12 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.1 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 93.09 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 93.03 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 92.92 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 92.82 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 92.73 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 92.61 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 92.13 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 92.08 | |
| PF04388 | 668 | Hamartin: Hamartin protein; InterPro: IPR007483 Th | 92.05 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 92.04 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 92.04 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 92.01 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 91.69 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 91.51 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.42 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 91.31 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 91.22 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 91.16 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 91.15 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 90.97 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 90.95 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 90.88 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 90.84 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 90.8 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 90.62 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 90.42 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 90.42 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 89.84 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 89.7 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 89.59 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 89.56 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 89.54 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 88.96 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 88.58 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 88.41 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 88.31 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 88.21 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 88.18 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 88.1 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 87.93 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 87.92 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 87.78 | |
| PF06685 | 249 | DUF1186: Protein of unknown function (DUF1186); In | 87.67 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 87.51 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 87.26 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 87.16 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 87.06 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 85.6 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 85.27 | |
| PF06685 | 249 | DUF1186: Protein of unknown function (DUF1186); In | 85.14 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 84.69 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 84.46 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 84.3 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 83.95 | |
| KOG2229 | 616 | consensus Protein required for actin cytoskeleton | 83.77 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 83.69 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 83.24 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 82.93 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 82.31 | |
| PF04388 | 668 | Hamartin: Hamartin protein; InterPro: IPR007483 Th | 82.04 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 81.91 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 81.65 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 81.09 | |
| PF04821 | 266 | TIMELESS: Timeless protein; InterPro: IPR006906 Th | 80.93 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 80.39 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 80.36 |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-91 Score=616.66 Aligned_cols=516 Identities=53% Similarity=0.845 Sum_probs=473.7
Q ss_pred CCCCchHHhhccCC--CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHh-hccHHHHHHHh
Q 009700 5 PGSRTEVRKKSYKT--GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKK-LESIPSMVQGV 81 (528)
Q Consensus 5 ~~~~~~~r~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l 81 (528)
..+.++.|+.+||. ++..+|+||||++++++|||+||+|.+.|||+.....+...+. ..+.+++ ...+|.+.+.|
T Consensus 3 srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l 80 (526)
T COG5064 3 SRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQL 80 (526)
T ss_pred cccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHH
Confidence 34578899999997 4779999999999999999999999999999984333321111 1122222 23579999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 161 (528)
.|+|.+.+..|...+|++++.+..|+++.++++|++|.++++|.......++++|+|+|+|+++|+..+++.++++|++|
T Consensus 81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVP 160 (526)
T COG5064 81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVP 160 (526)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchH
Confidence 99999999999999999999998999999999999999999996544368999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCC-CCCChhh
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGK-PPAPFDQ 239 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~ 239 (528)
.++++|.+++.+++++++|+|+|++++++.+|+.++..|++.+++.++..+. +.++.+++.|+|+|||+++ |.+....
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~ 240 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN 240 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999996443 5799999999999999998 8888899
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 240 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
++..+|.|.+++.+.|+++..+|||+++++++++.+.++.+++.|+..+|+++|.+++..++.+|++.+||++++++.++
T Consensus 241 isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QT 320 (526)
T COG5064 241 ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQT 320 (526)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
+.++++|+++.+..+|+++ ...+|++|||+|+|+++++.++++++++.+++|+|+++|.+.+..++++||||+.|...+
T Consensus 321 qviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 321 QVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999 889999999999999999999999999999999999999999999999999999999987
Q ss_pred C--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC
Q 009700 400 G--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD 477 (528)
Q Consensus 400 ~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~ 477 (528)
| -|+.++|++++|++++|+++|+..|.++.+.+|+++.++++.++.++...+...|.|+.++++.||++.|..+|++.
T Consensus 400 g~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~ 479 (526)
T COG5064 400 GLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSV 479 (526)
T ss_pred ccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcc
Confidence 7 47899999999999999999999999999999999999999999887665555888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 478 NNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 478 ~~~v~~~a~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
|.+||.+|+.||++||++|+.-|+-+|++.++.|+|+++ ++.+++|
T Consensus 480 n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~----~~~qg~f 525 (526)
T COG5064 480 NRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSN----VNQQGNF 525 (526)
T ss_pred ccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCC----ccccCCC
Confidence 999999999999999999987777799999999999986 3445555
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-87 Score=642.84 Aligned_cols=508 Identities=63% Similarity=0.993 Sum_probs=462.4
Q ss_pred chHHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHhhccHHHHHHHhcCCCHH
Q 009700 9 TEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSG 87 (528)
Q Consensus 9 ~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~ 87 (528)
...|+++||+ +++++|+||||++..+++||+||++.+.|||+........+ ............+.+++++.|+++.
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~S~~~~ 81 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDE---LLSDSQSQASNLELMLAALYSDDPQ 81 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccccc---ccchhHHHhhhhHHHHHHHhCCCHH
Confidence 4567777776 79999999999999999999999999999999322111111 0111112223468889999999999
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
.+..+...+|++++...+|++..++..|++|.||++|...+++.+|.+|+|+|+||++++.+.+..+++.|++|.++.++
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 99999999999999998899999999999999999998766699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHH
Q 009700 168 GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAA 246 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~ 246 (528)
.+++..++++|+|+|+|++++++.+|+.+++.|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|.
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999966666689999999999999999 88899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccC
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ 326 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 326 (528)
|..++.+.|++++.++||+++||++++++.++.+++.|++++|+.+|.+.++.++.+|++++||++++++.+++.++++|
T Consensus 242 L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~ 321 (514)
T KOG0166|consen 242 LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG 321 (514)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
+++.|..++..++...++++|||+|+||++|+.++++.++++|++|.|+.+|+.++.++|++|+||++|++.+|+++++.
T Consensus 322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~ 401 (514)
T KOG0166|consen 322 ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIK 401 (514)
T ss_pred hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHH
Confidence 99999999995547779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHH
Q 009700 407 FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAV 486 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~ 486 (528)
||++.|++++||++|...|.+++.+++++|.+|++.++....... |+++.+++++||+++++.||+|+|++||++|.
T Consensus 402 yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~ 478 (514)
T KOG0166|consen 402 YLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY 478 (514)
T ss_pred HHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence 999999999999999999999999999999999999998764321 88999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 487 KLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 487 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
+||++||++|++++...|.+. +|.|.++ .|.++|+|
T Consensus 479 ~II~~yf~~e~~~~~~~~~~~--~~~~~~~---~~~~~f~f 514 (514)
T KOG0166|consen 479 KIIDTYFSEEDDEDDQQPTTS--QFTFQVQ---APDGGFNF 514 (514)
T ss_pred HHHHHhcCCCccccccccccc--ccccCCC---CCCCCCCC
Confidence 999999998866543334333 6666543 68899998
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=343.62 Aligned_cols=368 Identities=27% Similarity=0.403 Sum_probs=329.5
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.+|+.+.. .++.++++|+|+|.+++++. ....+.+++.|.+|.|+.++.+++ ..++.+|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 679999999985 55899999999999999986 677888999999999999999999 999999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFVQLLGSASD-DVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
++.+++.|++++|+.++..++. .+..++.|+|.|+|.+. |. -..-.-..+++.|..++ .+.|++++..+||++++|
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~-P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS-PPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988664 78899999999999765 22 11112233788899999 899999999999999999
Q ss_pred cCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHH
Q 009700 229 CRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALR 306 (528)
Q Consensus 229 ~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~ 306 (528)
+.+.+.. ......+++|.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++.|..++. ++...++..|+|
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 9887433 34445899999999999999999999999999999999999999999999999999999 567779999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
+++||+.|+..+.+.++++|++|.|+.+|++. +.++|++|+|+|+|++. ++++++.++++.|+|++|+.+|...|.++
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 99999999999999999999999999999999 99999999999999997 78999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-------HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 386 KKEASWAISNATSGGT-------REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
...+..+|.|+...+. .....++-+.|++..+-.+-.+.+.++-..+...+.+++...+
T Consensus 424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 9999999999986442 3345566688999999999999999999999999988887653
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=314.70 Aligned_cols=363 Identities=25% Similarity=0.343 Sum_probs=320.0
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|++++++. ++....+++|+|+|.+++++. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 56999999995 566678999999999999986 667778899999999999999998 899999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 151 TRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDS--PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
++.+++.|++.+++.+|.+. +..+...+.|+|+|+|... |.....+.. .++.|.+++ ...|+++...|||+++
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 99999999999999998874 4588999999999999543 222233322 578888888 8889999999999999
Q ss_pred hhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHH
Q 009700 227 NFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 227 ~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 305 (528)
+|+.++... ......++.+.|+.+|.+++..++..+++.++|+..+++...+.++..|+++.+..+|.++...++..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999886332 2333467788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCC
Q 009700 306 RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAE 382 (528)
Q Consensus 306 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~ 382 (528)
|+++|+..++.++.+.+++.+++|+|+.+|++. +..++++|||+++|.++ .-|+.++++++.|+|.+|+.+|...+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999998 99999999999999997 46899999999999999999999998
Q ss_pred hHHHHHHHHHHHHhcCCCC---------H-HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHH
Q 009700 383 FEVKKEASWAISNATSGGT---------R-EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~---------~-~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~ 440 (528)
.++-+.++-++.|+...|. . .+..++-+.|+++.+..+-++.+..+-..+...+..++
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 8888899999999987663 2 33445556899999999999999998888887777766
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=363.84 Aligned_cols=407 Identities=22% Similarity=0.253 Sum_probs=345.1
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 71 LESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 71 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
-+.++.+++.+.++++..+..|+..+.+++... .+++..+++.|++|.|+++|.+++++.+|++|+|+|.+|++++++.
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 368999999999999999999999998787664 4578899999999999999987654799999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------HHHH---HHhcCChHHHHH
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS---------DDVREQAVWALGNVAGDSPS-----------CRDL---VLSHGALMPLLA 207 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~~---~~~~g~i~~Ll~ 207 (528)
++.+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 34699999999999987543 1221 234577888888
Q ss_pred hhccchhhHHH----HHHHHHhhhhcCCC-CCCChhhh-------------------HHHHHHHHHHhcCCCHHHHHHHH
Q 009700 208 QLNEHSKLSML----RNATWTLSNFCRGK-PPAPFDQV-------------------RPALAALQHLIFSSDEEVLTDAC 263 (528)
Q Consensus 208 ll~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~~~-------------------~~~l~~L~~ll~~~d~~v~~~a~ 263 (528)
.+ +..+...+ ..++|+|.+|++++ |....... .++++.|+.++...+.+++..++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 87 44443333 36789999999987 33312111 24567888899989999999999
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhH
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSI 343 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 343 (528)
|+|.+++.++.+..+.+.+.|+++.|+++|.+.+..++..|++++++++.+++.++..++++|+++.|+++|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999988888999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 344 KKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
+++|+|+|+|++.+.+ +++.++ +.|++|.|+++|.++++++++.|+|+|.|++..++.+. ++.++.+|.
T Consensus 505 qeeAawAL~NLa~~~~-qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLl 574 (2102)
T PLN03200 505 KEDSATVLWNLCCHSE-DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLL 574 (2102)
T ss_pred HHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhc
Confidence 9999999999998644 455555 78999999999999999999999999999998776554 367788899
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 423 ~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
++++.++..++++|.+++...+.... ........||++.|..|+.|+++++++.|.++|.+||.+..+
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 99999999999999999886654321 122234679999999999999999999999999999996654
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=349.81 Aligned_cols=417 Identities=19% Similarity=0.219 Sum_probs=368.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|+.++...+.+.+..++++|+.++..+ ...++.+.+.|++|.|+++|.+++ ..+|..|+|+|.+++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 46788999999999999999999999988764 677889999999999999999988 8999999999999999899999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.++.+..+...|++++|+.+| ++.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 667889999999999999743
Q ss_pred CCCCC----------------h----------------------hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 232 KPPAP----------------F----------------------DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 232 ~~~~~----------------~----------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
..... . ....++++.|..++.++++.++..|+|+|.+++...
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 21100 0 001368899999999999999999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.+..+.++..|++++++.+|.+.+..++..++++|++++.+.. .+...+++.|++++|+++|.+. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999997544 4455678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHH-H-HHHHHCCChHHHHhhcCCCChHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQ-I-QFLVSQGCIKPLCDLLVCPDPRIVT 430 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~l~~L~~ll~~~~~~~~~ 430 (528)
|++.. ++....+...|+++.|+++|++++++.|++|+|+|.+++..++.++ . .++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99875 4456677788999999999999999999999999999999887555 3 6777899999999999998888776
Q ss_pred H--HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCc
Q 009700 431 V--CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 431 ~--~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
. ++++|..+.+..+... ...+++..+++..++++.|..-..+.+|.++++|..+|+++..+..
T Consensus 799 ~~~al~~l~~l~~~~~~~~----~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 799 TSEALEALALLARTKGGAN----FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHHHHHHHHHHHhhcccCC----CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 6 9999999998655443 2367899999999999999555599999999999999999998765
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=229.62 Aligned_cols=363 Identities=21% Similarity=0.204 Sum_probs=314.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.+..+...+++.++.++..|..++.+++-. ..+.-.++.-+++..|+.-+..+. .++|..++.|++|++. .++.+
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccch
Confidence 4567778889999999999999999988765 445555666677777776666665 6999999999999999 47788
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+...|++.++.++-++.+..++..+..+|.|+.. ..+.|+.++..|+++.|+.++ ++.+..++.+|+.++++++-+
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 889999999999998888999999999999999964 455789999999999999999 899999999999999999877
Q ss_pred CCCCChhhh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 232 KPPAPFDQV--RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~~~~--~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
......... ..++|.|+.++.++++.++..|..+|.+++.... +...++++|.+|.++++|+++..........|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 533333333 3489999999999999999999999999997654 6678899999999999999998888888999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
|++-..-... .+.+.|++.+|+.+|..+.+.+++-.|..+|.|+++.+......+.+.|.||.++.++.++...+|.+.
T Consensus 318 nisihplNe~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPLNEV-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccCccc-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 9986544333 678999999999999988456699999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 390 SWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
..++..++.. .....++.+.|+++.|+.++.+.+.+++..+..+|.|+...-+
T Consensus 397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 9999999884 4567888999999999999999999999999999999886543
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=225.12 Aligned_cols=364 Identities=19% Similarity=0.244 Sum_probs=314.0
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 70 KLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
.+..+..|+..+.++..++|..+..++.+++.. +.....+...|.+.++..+-++.+ ..+|..+..+|.|++. +.+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence 345677788778888888999999999999877 566777888999999999777777 8999999999999998 889
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcC--ChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHG--ALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
.++.++..|++|.|+.++.+.+++++..|..+++||+.+.. .|+.+.+.+ .++.|+.++ .++++.++..+..+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987765 688888887 899999999 88899999999999999
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-hhhHHHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-TTVLVPALR 306 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al~ 306 (528)
++.+..........+.+|.++++++++-.........++.|++-++. +.-.+++.|++.+|+.+|...+ ..++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 99886555555668999999999998877777778889999987754 4456788999999999999854 559999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
+|.|++.........+.+.|.++.+..++.++ ...+|.+...+++.++- +......+.+.|++|.|+.+..+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888888899999999999999998 88999999999998865 45556788899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH------CCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 387 KEASWAISNATSGGTREQIQFLVS------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
-+|+.||.|++.. .+....+++ .|+-..|...+.+.+..+...+.|.+..++....
T Consensus 435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999984 455555554 2555678888888888888888888888887653
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-25 Score=222.88 Aligned_cols=390 Identities=21% Similarity=0.193 Sum_probs=317.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+.+-..++.++. +...++..|.+++.. ......+.+.|+++.|+.+|++++ .++...++++|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQeq-Llrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQEQ-LLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 334444444433 444677888888765 566678889999999999999887 8999999999999998 78899999
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
.+.|+++.|.+++.+++.+++..++++|.|++.+.. .|..++..|++|.|+.+|. + +..+..++.+|.++|.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999987655 7999999999999999994 3 34556789999999998765
Q ss_pred CChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 235 APFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.......+++|.+++++- .+++.+...+++.+.|++... .+.+.+++.++++.|+.........+ .+..+.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence 555566789999998765 456777788899999999875 46688888888999998876544322 4468888888
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASW 391 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 391 (528)
+.+.....+. +++..|+.++..+.+.+...++..+|+|++..+....+.+-+.+++|.|.+.|..+ +.++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7644332232 47777888887765788999999999999876666666666789999999999866 5689999999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHH
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDK 469 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 469 (528)
.++.++. +++....+.+.|+++.|+.+|+. .|.+++.+++.+++.++...+- ...++.+.++...
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ll~~~~~~~y 624 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REVLLKETEIPAY 624 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHHHHhccchHHH
Confidence 9999887 67788888899999999999976 6788999999999999988652 3566778899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHh
Q 009700 470 IENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 470 l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
+..|.++.|++|+..|...++-.
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999998777666543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-23 Score=212.10 Aligned_cols=360 Identities=20% Similarity=0.206 Sum_probs=301.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.|.+++.++...++..|.++... ..+...+.+.|+++.|++++.+++ .+++..|+++|.|++. +++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6799999999999999999999999998765 578889999999999999999988 8999999999999999 88899
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+.. .|..+...++++.+++++...+++.+...+++++.|++..
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999754 566789999999987664 7889999999999999987777777888899999999998
Q ss_pred CCCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHh
Q 009700 232 KPPAPFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~ 309 (528)
+.........++++.|+... +..|+- .+..+.|++.+++.....+. +++..|+.++.. .++.....++.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 75544444457788877654 444433 34588899988754444443 377888888876 56789999999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVK 386 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 386 (528)
|+...+....+.+.+.++++++..+|..+. .+++.-+++.+++.++. ++.....+.+.|+++.|+.+|... |.++.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 999877677766777899999999997653 56789999999999875 677777788999999999999765 68899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 387 KEASWAISNATSGGTREQIQFLV-SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
...++++..+..+. +.+..++ +.+++..|++++.+.++.++..+-.+|.-+....+++.
T Consensus 596 lQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 596 LQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999963 4555665 57899999999999999999999999999998877653
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=180.14 Aligned_cols=389 Identities=20% Similarity=0.256 Sum_probs=314.8
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..|++.++.. |+..|++|+..|+.+++..+.+....+--.-++|.|+.+|++..+.++...|+++|++++.--|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 67888888865 99999999999999999875555544444567999999999988899999999999999998899999
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+++.++||.|+.-|.. ...++.++++.+|-.|+...+. .++..|++...+..| +.-+..+++.|+.+..|.|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999975544 8899999999999999988774 688999999999999 778899999999999999998
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCcHHHHHHHhcCCC----hhhHHHH
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHSS----TTVLVPA 304 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a 304 (528)
-+...+..+...+|.|..+|+..|....+.+|-++.++++. .++..+.++..|++....++|.-.. ..+....
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 77777788899999999999999999999999999999864 5678888999999999999987642 3455667
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCc-------------hhHHHHHH-----------------------
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-------------KSIKKEAC----------------------- 348 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-------------~~v~~~a~----------------------- 348 (528)
++.+..++.+++-....+...++...+..+|..... |.-..+..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~ 484 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLI 484 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhh
Confidence 888888888888777777777888887777754210 00000000
Q ss_pred -----------------------------HHHH-------------H---------HhcCCHHHHHHHHHcCcHHHHHHH
Q 009700 349 -----------------------------WTIS-------------N---------ITAGSRSQIQAVIEANIIAPLVYL 377 (528)
Q Consensus 349 -----------------------------~~L~-------------n---------l~~~~~~~~~~l~~~~~i~~L~~l 377 (528)
..+. + +....|+..+.++. .++|.|+++
T Consensus 485 ~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveV 563 (1051)
T KOG0168|consen 485 YEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEV 563 (1051)
T ss_pred cccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHH
Confidence 1111 0 00122333444443 489999999
Q ss_pred HccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcch
Q 009700 378 LQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTAN 455 (528)
Q Consensus 378 l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~ 455 (528)
+.+. ++.||..++.||..+....+.+.+..++.+ .+-..+-.+|.++|..++..+|....-++++-++.
T Consensus 564 YsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~--------- 634 (1051)
T KOG0168|consen 564 YSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT--------- 634 (1051)
T ss_pred HhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH---------
Confidence 8876 899999999999999998889988888755 55667888999999999999999999888877643
Q ss_pred hhHHHhhhcccHHHHHHHhcCC
Q 009700 456 VYSEMIDECDGLDKIENLQSHD 477 (528)
Q Consensus 456 ~~~~~l~~~g~~~~l~~L~~~~ 477 (528)
|...|.+.|++..+..|....
T Consensus 635 -F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 635 -FSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred -hhhhHhhhhHHHHHHHHhccC
Confidence 888899999999999997633
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=166.66 Aligned_cols=363 Identities=20% Similarity=0.226 Sum_probs=283.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--HHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS--CRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~--~~~ 194 (528)
+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+++|-|+...... .+-
T Consensus 235 lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 778889999888 89999999999999999999999999999999999999999999999999999999966554 677
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC--------------CCHHHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS--------------SDEEVLT 260 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~~ 260 (528)
.+.+.++++.++++|....|.++++.++.+|+||+..+ ......+...++.|..-+-. .+.++..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 78899999999999987789999999999999999883 34445556666666544321 1367889
Q ss_pred HHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcCCc-----------------
Q 009700 261 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTGDD----------------- 316 (528)
Q Consensus 261 ~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~----------------- 316 (528)
.+..+|.|++....+..+.+-+. |++..|+..+++ .+....++|+.++-|+...-.
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 99999999998777777777665 889999888763 455567777777777753211
Q ss_pred --------------chhHH----------------------HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH-
Q 009700 317 --------------TQTQC----------------------VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR- 359 (528)
Q Consensus 317 --------------~~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~- 359 (528)
..... +....++..-+.+|....++.+.+.++.+|-|++++..
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 00000 11122444545556544377889999999999998532
Q ss_pred ---HHHHHH-HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC------ChHHH
Q 009700 360 ---SQIQAV-IEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP------DPRIV 429 (528)
Q Consensus 360 ---~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~~~ 429 (528)
.....+ .+..++|.|++++..++..+...++.+|.|++.+. . .+.++..++++.|+++|... +.+++
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--h-hhhhhhcchHHHHHHhCcCCCCCcCchHHHH
Confidence 223334 36789999999999999999999999999999953 2 34455688999999999653 35788
Q ss_pred HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhcCC
Q 009700 430 TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~~~ 495 (528)
..++..|.+|+..... .+.-+-+.+|+++|..|. ...++.+.+.|..++..++..
T Consensus 630 ~~vc~tl~niv~~~~~-----------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVL-----------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHhHHHHHHHhHH-----------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8999999999976543 244555899999999996 455678899999998887764
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-16 Score=162.89 Aligned_cols=363 Identities=17% Similarity=0.143 Sum_probs=261.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++..+|+++..|..|+..|..+....++.....+ ..+.+.|.+.+.+++.+ ++..|+++++.++...+.....
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHH
Confidence 33444455689999999999999988776533333222 23578888889888845 9999999999998855322222
Q ss_pred HHh-cCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhh
Q 009700 154 VIE-HGAVPKFVQLLG----SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSN 227 (528)
Q Consensus 154 i~~-~g~i~~L~~lL~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~ 227 (528)
+-. ...+|.++..+. .++.+....++.+|..++...|.+-...+. .++...+.... ++-++.++..|+.+|..
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 222 246776766654 467777889999999999777764333222 14444455553 23478899999999999
Q ss_pred hcCCCCCCCh---hhhHHHHHHHHHHhcCC--C--------------HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHH
Q 009700 228 FCRGKPPAPF---DQVRPALAALQHLIFSS--D--------------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 288 (528)
Q Consensus 228 l~~~~~~~~~---~~~~~~l~~L~~ll~~~--d--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 288 (528)
+++..|.... .....+++.++.++... | ..--..|..++-.++.+-+.. .+-.-+++.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~ 352 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEA 352 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHH
Confidence 9987432221 23456677777766421 1 112334555665555542211 111125677
Q ss_pred HHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 009700 289 LVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEA 368 (528)
Q Consensus 289 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 368 (528)
+-.++.+.+|.-|..++.+|+.++.|+.+.....++ .+++.++..|.++ ++.||..||.+++.++.+....++.....
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 788889999999999999999999999887765554 6899999999999 99999999999999999888888888888
Q ss_pred CcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH-HHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 369 NIIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 369 ~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
-++|.|+..+.+. +++|+..|+.++.|++..++.+.+....+ +++. .|..++.++.+.+++.++.+|..+....+..
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 8899999998876 67999999999999999887665544322 3555 5555677888999999999999999887654
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=154.25 Aligned_cols=402 Identities=18% Similarity=0.173 Sum_probs=296.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..+++.|... .....++..+..-+.. .+.. +..-.+.+..+|++.+ .+....++.+|..+.... .....
T Consensus 6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l----~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l- 74 (503)
T PF10508_consen 6 NELLEELSSK--AERLEALPELKTELSS--SPFL----ERLPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL- 74 (503)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHH----HhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH-
Confidence 4444455443 3345555555544433 1211 1222344788888776 677778888888888732 22222
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|.+++...+.
T Consensus 75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence 346778999999999999999999999999988887788888999999999999 899999999999999999987644
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
.....-.+.++.|..++...++.++..++.++.+++..+++....+.+.|+++.++..|.+++.-++..++.++..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 4333345568889999988888999999999999999999999999999999999999999888899999999999999
Q ss_pred CcchhHHHhccCChHHHHHHhcccC-ch---h-HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 315 DDTQTQCVIDNQGLPRLYQLLTQNY-KK---S-IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 315 ~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.+...+.+.+.|+++.|..++.+.. ++ . ..-......++++...+..+.... ..++..+.+++.+.|+..+..|
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHH
Confidence 5666778999999999999997653 33 1 222334667777764444443222 2366677788889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHH-HHC-----CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhh
Q 009700 390 SWAISNATSGGTREQIQFL-VSQ-----GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDE 463 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~ 463 (528)
..+++.++. +.+....+ ... .++..+.....+...+++..++.++.+++...+.....+ -.+.....++.
T Consensus 311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~--i~~~~~~w~~~ 386 (503)
T PF10508_consen 311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND--ILSITESWYES 386 (503)
T ss_pred HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH--HHHHHHHHHHH
Confidence 999999987 55666666 333 246666667777888999999999999997665421100 01111222222
Q ss_pred cc--cHH-HHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 464 CD--GLD-KIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 464 ~g--~~~-~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.| ... .+..+...+=++++-.+..++...+..
T Consensus 387 ~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 387 LSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 23 223 566777888899999999999887764
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-15 Score=152.59 Aligned_cols=397 Identities=18% Similarity=0.173 Sum_probs=297.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.+...+.+.+.+....++..|.+++... .+... ..++.+.|...|.+++ +.++..+++.|.+++.++......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3777788888888888888999998863 22222 4567899999999998 99999999999999997777788888
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
+.++++.++.+|.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999999999999999877654 5567777788888888 5556778888999999998876433
Q ss_pred C-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh-----hhHHH-HHHHH
Q 009700 236 P-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST-----TVLVP-ALRTV 308 (528)
Q Consensus 236 ~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~-al~~L 308 (528)
. .....|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+... .+..+ .+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 2 23336899999999999999999999999999999 55577888999999999999976322 22333 44788
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-c----HHHHHHHHccCC
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV-IEAN-I----IAPLVYLLQHAE 382 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~-~----i~~L~~ll~~~~ 382 (528)
++++...+....... ..++..+..++.+. ++..+..|..+++.+++ +.+..+.+ .+.+ . +..+.....++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 888876443332111 24666777778888 99999999999999975 56666666 4332 3 444444556677
Q ss_pred hHHHHHHHHHHHHhcCCCCH---HHH----HHH---HHCCChH-HHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccC
Q 009700 383 FEVKKEASWAISNATSGGTR---EQI----QFL---VSQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGS 451 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~~---~~~----~~l---~~~~~l~-~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 451 (528)
.++|..+..+|.++...++. +.+ +.. ...+... .+..+++.+=++++..++..|..++.....
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------ 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------ 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence 89999999999999664432 111 111 1234455 888889888899999999999999977532
Q ss_pred CcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 452 TTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 452 ~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
...+....|+++-+-.=....+.+..+.=..++..+..
T Consensus 425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 23344455555555433445667777776777777653
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=158.59 Aligned_cols=364 Identities=21% Similarity=0.253 Sum_probs=273.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh--h
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE--H 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~ 150 (528)
.+|+.+.+|.+.++.++-.|+..+..+.... +.....+.+.|.||.||.+|.+.. .+++.+|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 5799999999999999999998888665543 555567778999999999999998 99999999999999997655 7
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-------------chhhH
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-------------HSKLS 216 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-------------~~~~~ 216 (528)
.-.+.+.++|+.++.+|.. .+.++++.+..+|+||++.+ .++..++. ..+..|...+.. -.+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8888999999999999987 88999999999999998763 35555443 345555544311 11367
Q ss_pred HHHHHHHHhhhhcCCCCC--CChhhhHHHHHHHHHHhc------CCCHHHHHHHHHHHHhhccCCh-----HHHHHH---
Q 009700 217 MLRNATWTLSNFCRGKPP--APFDQVRPALAALQHLIF------SSDEEVLTDACWALSYLSDGTN-----DKIQAV--- 280 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~-----~~~~~~--- 280 (528)
+..+++.+|.|++..... .......|++..|+..++ ..|..-.+++..++.|++..-. ...+..
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 889999999999986422 223344788888887776 2356677888888888864321 000000
Q ss_pred ---------------------------------------------HHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcC
Q 009700 281 ---------------------------------------------IEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 281 ---------------------------------------------~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~ 314 (528)
....++..-..+|. +.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 00112222233333 35667889999999999987
Q ss_pred Ccc----hhHHH-hccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC------Ch
Q 009700 315 DDT----QTQCV-IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA------EF 383 (528)
Q Consensus 315 ~~~----~~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~ 383 (528)
... ....+ ....+++.|+.+|... +..+.+.++.+|.|++.+ .. .+.++..++++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 643 22333 5678999999999999 999999999999999874 22 34556678999999999765 36
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhh
Q 009700 384 EVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~ 444 (528)
++...+|.+|.|++.. +....+-+.+.+.++.|+.+..+. +++..+.+...+..+-...+
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999974 577888889999999999988774 56777777777777665544
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-16 Score=162.85 Aligned_cols=365 Identities=19% Similarity=0.190 Sum_probs=276.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD--LPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
....+..++...|++. -.+.|..+.+. ...+..+...|.+|.|+++|.-++ +.+.+..|-.+|.||....++.
T Consensus 198 ts~sllsml~t~D~ee---~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~ 272 (2195)
T KOG2122|consen 198 TSNSLLSMLGTDDEEE---MARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE 272 (2195)
T ss_pred hhhHHhhhcccCCHHH---HHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence 4446677777777643 33445555443 556778889999999999997654 3678899999999999977766
Q ss_pred HHHHHhcCChHHHHH----------hhCC-----CCHHHHH---HHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc--
Q 009700 151 TRVVIEHGAVPKFVQ----------LLGS-----ASDDVRE---QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-- 210 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~----------lL~~-----~~~~i~~---~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-- 210 (528)
...-.+..+++.|-+ ++.. ....+.. .|+.+|..++ .++++|..+-+.|++..+-.++.
T Consensus 273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vD 351 (2195)
T KOG2122|consen 273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVD 351 (2195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHH
Confidence 554443334443321 2222 1122222 4555555554 44668999999999999988773
Q ss_pred ---------cchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH
Q 009700 211 ---------EHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA 279 (528)
Q Consensus 211 ---------~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 279 (528)
......+++++..+|.||..++.... .....+++..++..|.+..+++..-...+|.||+-..+.+...
T Consensus 352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence 12245799999999999999973322 2334899999999999988899888999999999876656555
Q ss_pred HHH-hCcHHHHHHH-hcCCChhhHHHHHHHHhHhhcCCcchhHHHhc-cCChHHHHHHhcccC---chhHHHHHHHHHHH
Q 009700 280 VIE-AGVCPRLVEL-LLHSSTTVLVPALRTVGNIVTGDDTQTQCVID-NQGLPRLYQLLTQNY---KKSIKKEACWTISN 353 (528)
Q Consensus 280 ~~~-~~~l~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~---~~~v~~~a~~~L~n 353 (528)
++. .|-+..|+.+ |...+.......+.+||||+.++......+-. .|.+.+|+.+|.... ...+...|..+|.|
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 554 4777777765 45566678899999999999877665444433 599999999997652 35678888888888
Q ss_pred Hhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHH
Q 009700 354 ITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVT 430 (528)
Q Consensus 354 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~ 430 (528)
+.. .+..+.+.+.+++++..|+..|++....+..++|.+|+||.... ++.-++|++.|.+..|.+++.+++..+..
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 764 57888888889999999999999999999999999999999974 66668999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 009700 431 VCLEGLENILKIGE 444 (528)
Q Consensus 431 ~~l~~l~~i~~~~~ 444 (528)
....+|.|++..-+
T Consensus 591 GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 591 GSAAALRNLLNFRP 604 (2195)
T ss_pred hHHHHHHHHhcCCc
Confidence 99999999998764
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-16 Score=142.89 Aligned_cols=354 Identities=15% Similarity=0.102 Sum_probs=249.8
Q ss_pred CHHHHHHHHHHHHHHhccc--CCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 85 NSGLQLEATTQFRKLLSIE--RCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+..+...+..++......+ ++......+.++++..|.+..++++ .++..++.++|+|++..+.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3344444555555554321 1122334466788999999999887 899999999999999999999999999999888
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-chhhHHHHHHHHHhhhhcCCCCC
Q 009700 163 FVQLLGS-------ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 163 L~~lL~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
++.+|+. .+.+....+...|.|..-++...+..+.+.|+++.|...+.- ..+....+.+.....|+..--..
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8887765 235777888899999999999999999999999988887732 22333333333333333221100
Q ss_pred --CChhhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CCh-------hhHHH
Q 009700 235 --APFDQVRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SST-------TVLVP 303 (528)
Q Consensus 235 --~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~v~~~ 303 (528)
.....-..+.-.+++++.+ -.+++.+-+...+.+.++++. ..-.+.+.|.++.++.++.. +.. .....
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 1111112333344455443 245566666777777776643 44456777899999888876 221 12233
Q ss_pred HHHHHhHhhcCCcchhHHHhccC-ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc--
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQ-GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH-- 380 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-- 380 (528)
++....-+..|++... .+...+ +++.+..++.+. +....-.+..+|+|+++.+... .++++.+++..|++++..
T Consensus 293 ~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhc
Confidence 4444444556655543 455555 899999999999 9999999999999998865554 468888999999999865
Q ss_pred ---CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 381 ---AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 381 ---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
++.+++..++.||.|+.... .....+...|+.+.+...++...|.++...+..+..+....++
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~ 435 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY 435 (604)
T ss_pred CCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence 46889999999999998843 3445677899999999999999999998888888877765553
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-14 Score=128.13 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=251.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 009700 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-DLPQLQFEAAWALTNIASGTSEHTRVVIEHGA 159 (528)
Q Consensus 81 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 159 (528)
-.+++...-++++.+|..+... . ..+.+..+...++.+|... ++.++....+.++..-+..+..+++.+++.++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~--q---pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHK--Q---PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcC--C---cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 3467778888899888877544 2 2355667788889998643 24788889999999999999999999999999
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 160 VPKFVQLLGS-ASDDVREQAVWALGNVAGDSP---------SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 160 i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
++.+...|.. +...+.....|++..+..++. .+...+...|++..|+..+.-..++.+...++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999987765 445677788999999876542 345667788889999999976778999999999999998
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCC-CHH---HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSS-DEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVP 303 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~ 303 (528)
-.+.........|++..|++++.+. +.. ....++..|..++.. ++....+++.|+.+.++.++.. ++|.+...
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 7765555566689999999999873 333 446677788887754 5577889999999999998753 78889999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE 382 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 382 (528)
++.+++-++-..++....+++.|+-...++.|+..+ ...+++.|||+|.|+...+.++...++.. .++.|+..-...+
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANH 428 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcC
Confidence 999999999988888889999999999999997543 67899999999999999888888777765 5788888888888
Q ss_pred hHHHHHHHHHHHHhcC
Q 009700 383 FEVKKEASWAISNATS 398 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~ 398 (528)
+.....|-.+|..+-.
T Consensus 429 ~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 429 ETCEAAAKAALRDLGC 444 (461)
T ss_pred ccHHHHHHHHHHhcCc
Confidence 8888888888887754
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-15 Score=156.59 Aligned_cols=328 Identities=18% Similarity=0.177 Sum_probs=253.1
Q ss_pred HhhccHHHHHHHhcCC---CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHH----------HhhcCCC------C
Q 009700 69 KKLESIPSMVQGVLSE---NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV----------EFLDRHD------L 129 (528)
Q Consensus 69 ~~~~~l~~l~~~l~s~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv----------~lL~~~~------~ 129 (528)
...+.++.|++.+... +.+.+..|-.+|.+++....+.. ..=.+..+++.|- .++.... .
T Consensus 232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k-r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK-RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 3457899999999854 45678888889999987642221 1111122333332 2232211 1
Q ss_pred hHHHH-HHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhHHH-H
Q 009700 130 PQLQF-EAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS------------ASDDVREQAVWALGNVAGDSPSCRD-L 195 (528)
Q Consensus 130 ~~v~~-~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~i~~~a~~~L~nl~~~~~~~~~-~ 195 (528)
..-+. .|+..|..++. +.+++..+.+.|++.++-.||.- ....+|..+..+|.||......++. .
T Consensus 311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23455 67777888877 89999999999999999887742 2357999999999999966655544 4
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh--HHHHHHHHHH-hcCCCHHHHHHHHHHHHhhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV--RPALAALQHL-IFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~ 272 (528)
+...|++..++..| .+..+++.+....+|.||+..........+ .+.+-.|..+ ++...+..+..++.+|+||+.+
T Consensus 390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 55678999999999 666778888999999999988633333222 4555555544 5666778889999999999999
Q ss_pred ChHHHHHHHHh-CcHHHHHHHhcCC----ChhhHHHHHHHHhHhh---cCCcchhHHHhccCChHHHHHHhcccCchhHH
Q 009700 273 TNDKIQAVIEA-GVCPRLVELLLHS----STTVLVPALRTVGNIV---TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIK 344 (528)
Q Consensus 273 ~~~~~~~~~~~-~~l~~L~~lL~~~----~~~v~~~al~~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 344 (528)
..++...++.. |.+..|+.+|... .-.|.+.+-.+|.|++ ..+..+.+.+.+++.+..|++.|++. +..+.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence 88888888876 8899999999875 3356777666666654 55777888899999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 345 KEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 345 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.++|.+|.||.+.+++..+.+++.|.++.|..++.+.+..+..-++.+|.|+...-
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999998754
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-14 Score=131.68 Aligned_cols=377 Identities=19% Similarity=0.144 Sum_probs=277.2
Q ss_pred CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 009700 85 NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV 164 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 164 (528)
..++...|+..|.+++.. ...-..+....++..||..|..++ .++.......|..++- ..+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence 344555677778888754 344556778899999999999888 7888888899999887 677888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHH
Q 009700 165 QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPAL 244 (528)
Q Consensus 165 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 244 (528)
+++...+++++...+..+.|++.++. .|..++..|.+|.+..++.++... .-|+..+..++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999987765 688889999999999999443332 34666777888776656666678999
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 245 AALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 245 ~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
+.+.+.+- ..+.+|-...+....|+|-+.. +.+.+++...+..|+..--....... ...+.|++.+.......++
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~lL---mK~vRniSqHeg~tqn~Fi 503 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDLLL---MKVVRNISQHEGATQNMFI 503 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccchHH---HHHHHHhhhccchHHHHHH
Confidence 99887654 4456665555555567776533 45666766667777665433222233 3455666665543333444
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCC
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~ 401 (528)
+ .+.-|...++...+...-.++..+++|+...+-+..+.+-..+++|.+-..|..+ ..++......+++.++. +
T Consensus 504 d--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d 579 (791)
T KOG1222|consen 504 D--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--D 579 (791)
T ss_pred H--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--h
Confidence 4 4556666676654667888999999999887667776677889999999998876 45677777777777776 3
Q ss_pred HHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCH
Q 009700 402 REQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNN 479 (528)
Q Consensus 402 ~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~ 479 (528)
......+...++++.|+++|+. .|.+++.+++..+..++...-. -.-++.+...-..+..|+++.|.
T Consensus 580 ~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 580 LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchHHHHHHHhcccH
Confidence 4455556688999999999976 6777888888888888877321 23456666667788899999999
Q ss_pred HHHHHHHHH
Q 009700 480 EIYEKAVKL 488 (528)
Q Consensus 480 ~v~~~a~~i 488 (528)
+|++.+...
T Consensus 649 eiRkVCDn~ 657 (791)
T KOG1222|consen 649 EIRKVCDNA 657 (791)
T ss_pred HHHHHHHHH
Confidence 988655433
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-14 Score=131.38 Aligned_cols=400 Identities=12% Similarity=0.047 Sum_probs=292.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC----C--ChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH----D--LPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~--~~~v~~~a~~~L~~l~~ 145 (528)
+.++.|.+...|+|.++-.+..++|.+++..+ ++.+..+.+.|+-..+++.|+.- + +.+.-.-+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 34677777788888999999999999998876 78889999999977777766531 1 23566667788999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
++.+.+..+.+.|+++.|...+.- ++....+.++..++|+.+- ++...+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999988754 6777888888888887743 2334556667777888888887777888999999
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcC-CC-------HHHHHHHHHHHHhhccCChHHHHHHHHhC-cHHHHHHHh
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFS-SD-------EEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 293 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL 293 (528)
..|...+.++...-.....|.+..++.+++. .+ ......++....-+..+++ ..+.+...+ +++.+.+++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHh
Confidence 9999999886444444446677777777764 21 2233444444555555544 445555555 899999999
Q ss_pred cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009700 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITAGSRSQIQAVIEAN 369 (528)
Q Consensus 294 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 369 (528)
.+++......+.-++||+++.++..+ .+++.+++..|++.|.... +..++..++.+|.|++-. ......++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999776655 6888899999999996421 567889999999999753 23344677899
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCChH-HHHHHHHHHHHHHHhhhhch
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVS-QGCIKPLCDLLVCPDPR-IVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~-~~~~~l~~l~~i~~~~~~~~ 447 (528)
+...++.+++...|++...-..++.-+..+ .+.....+.+ -..+..|++.-+++|-. +.....+.+.-+++..-..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k- 480 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK- 480 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence 999999999999999888887777766553 2223333333 25677777777777654 5555666666666654321
Q ss_pred hccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHH
Q 009700 448 EAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKA 485 (528)
Q Consensus 448 ~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a 485 (528)
.+.-.+.+.||++....+....+...+..|
T Consensus 481 --------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 481 --------DVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred --------hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 144556688888888877766666555544
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-13 Score=124.71 Aligned_cols=359 Identities=16% Similarity=0.148 Sum_probs=271.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+.-|++.|...+.++......-|.++.-. .++...+.+.|++..|+.++...+ ++++...+..+.|++. +...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence 467788888887777777666667766544 577788889999999999999988 9999999999999998 667888
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.++..|.+|.|..+|.++. -...|+..+..++.+.. .+..+....+++.+++.+....+..+-........|+|.++
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 8999999999999998643 33457777888876654 67777888889988887766666666666666677898887
Q ss_pred CCCChhhhHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhH
Q 009700 233 PPAPFDQVRPALAALQH-LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGN 310 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~ 310 (528)
...........+..|+. .+++.|.-+ ...+.+++.+.......+++ .+.-|...++. .+......|+.+++|
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 55555555556666654 455555432 34567777776655556665 45666666665 456788899999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKK 387 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~ 387 (528)
+.-..-...+.+.+.+++|++...|..+- ..++.-...-+++.++. .......+..+++|+.|+++|+.. +.+...
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 99877777777788899999999997653 34566677777777755 344455566889999999999764 567777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 388 EASWAISNATSGGTREQIQFLV-SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
..++++..+..+ ...+.+++ +...-..+++++...+.+++.++-.+|.-+.....++.
T Consensus 611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888875 34455555 44666789999999999999999999988888776654
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-13 Score=120.45 Aligned_cols=317 Identities=16% Similarity=0.187 Sum_probs=244.4
Q ss_pred hcCcHHHHHHhh---cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009700 113 RAGVVPRFVEFL---DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAG 187 (528)
Q Consensus 113 ~~g~i~~Lv~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~ 187 (528)
..|..+.++.++ .+++ ..+-..++.+|..+..+.|+ +.+..++..++++|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345555555444 3344 77889999999999887665 4456778889998865 678888889999999998
Q ss_pred CChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-Ch---------hhhHHHHHHHHHHhcCC-CH
Q 009700 188 DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PF---------DQVRPALAALQHLIFSS-DE 256 (528)
Q Consensus 188 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~---------~~~~~~l~~L~~ll~~~-d~ 256 (528)
..+.+|+.+.+.++++.+...|.......+.+.++|++.-|..++... .+ ..-.+++..|...++.. |+
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 889999999999999998878866666689999999999998775211 11 11245677788888754 79
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh-h---hHHHHHHHHhHhhcCCcchhHHHhccCChHHHH
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST-T---VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLY 332 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~---v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 332 (528)
.+...++.+|..++-. ++.-+.+.+.|++..+++++.+.+. . ....++..|..++. +++....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 9999999999999865 4577888999999999999988433 3 34567777777764 556666899999999999
Q ss_pred HHhc-ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 333 QLLT-QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 333 ~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
.++. +..+|.|..+++.+++-++-..|++-..+++.|+-...++.|+.. ...++++|||.+.|++..+ .+++..++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHH
Confidence 9874 333899999999999999999999999999999999888888765 4689999999999999864 56777777
Q ss_pred HCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 410 ~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
..| ++.|+..-...++.....+-.+|.-
T Consensus 414 ~~G-iE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 414 ANG-IEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred hcc-HHHHHHHHHhcCccHHHHHHHHHHh
Confidence 665 6666666666666555555455543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-14 Score=132.60 Aligned_cols=255 Identities=16% Similarity=0.143 Sum_probs=201.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
-++.|..+|.+.+ ..++..|+++|..+-. ..+++.+..++.++++.+|..++|+|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3778899998888 8999999999998754 23567788889999999999999999998532211
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
....++.|..++.+++++.++..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+...
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~--- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE--- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---
Confidence 11246777777558889999999999999997553222 234566777888888999999999999876531
Q ss_pred HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
..++.|+.+|.++++.++..|+.+||.+...++ .+++.|+..|.+. +..||..|.|+|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 267899999999999999999999999843222 2456799999988 9999999999999873
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHH
Q 009700 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLE 434 (528)
Q Consensus 356 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~ 434 (528)
. + .++|.|+..+.+++ ++..|+.+|+++-. ++ .++.|..+++ ..|+.++..+.+
T Consensus 221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHHH
Confidence 2 2 37899999999876 67789999998865 22 5788888886 789999988888
Q ss_pred HHHH
Q 009700 435 GLEN 438 (528)
Q Consensus 435 ~l~~ 438 (528)
++..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 7753
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-14 Score=131.08 Aligned_cols=254 Identities=15% Similarity=0.102 Sum_probs=199.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.|+..|.+.+..++..|+..|..+-. ..+++.+..++.+++ +.++..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 46888999999999999999999986632 224777888888888 99999999999998652211
Q ss_pred HHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQL-LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
...+++.|..+ +.++++.+|..++.+|++++...... ....+..+...+ .+++..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11256778776 67788999999999999997443211 011344555666 66788999999999976642
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
...++.|+.++.++++.|+..++++|+.+....+ .+++.|+..|.+.++.++..|+++|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999844333 2567899999999999999999999975
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc-cCChHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ-HAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 390 (528)
-. ...++.|++.|.++ + ++..++.+|+++.. + ..+|.|..++. .+|..++..|.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 43 24678999999876 4 78899999999853 2 26889999996 77999999999
Q ss_pred HHHHH
Q 009700 391 WAISN 395 (528)
Q Consensus 391 ~aL~n 395 (528)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-12 Score=134.50 Aligned_cols=391 Identities=16% Similarity=0.116 Sum_probs=280.6
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 75 PSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 75 ~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
..++..+.++ .+.++..-+..+..+++..-+..+ .++++.|.+..++++ +..|+.|+.+|..+...-...-..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 4566666664 466888888888888876522223 346899999999998 999999999999988733222211
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hHHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhh
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP---SCRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSN 227 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~ 227 (528)
.+ ..+.+.+.+.+.+++..+|..++++++.++...+ ..++.+.. .+|.++..+. +..+.+....+..+|..
T Consensus 156 ~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 156 HL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 11 1234556666777666699999999999985442 33333332 4565665553 44566677888899999
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChHHHHHHH--HhCcHHHHHHHhcCC--C----
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTNDKIQAVI--EAGVCPRLVELLLHS--S---- 297 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~--~---- 297 (528)
|....|..-...+..++........+. ++.++..|+..+..++...+...+... -..+++.++.++... +
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 988877666666777888877777765 689999999999999887554333222 223566666665431 1
Q ss_pred ----------hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 298 ----------TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 298 ----------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
......|..+|-.++.+-+... +-.-+++.+-.+|.++ +..-|+.++.+|+.++.|+.+.+...++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1245567788888876544211 1123567788889998 9999999999999999999998887665
Q ss_pred cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhc
Q 009700 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
.+++..+..+.++++.||-.|+.|++.++..-.++.-++ ...-+++.|+..+++ .++++...+..++.+++..+.+.
T Consensus 389 -~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 389 -KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred -HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 589999999999999999999999999998766555444 455677788888877 56789999999999999988765
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~ 490 (528)
. ..+|...+-+. ++..|.+++.+.+++.+...|.
T Consensus 467 ~------l~pYLd~lm~~----~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 467 I------LEPYLDGLMEK----KLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred H------HHHHHHHHHHH----HHHHHhcCCchhHHHHHHHHHH
Confidence 4 45566666322 7777888999988877666554
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-13 Score=131.63 Aligned_cols=365 Identities=16% Similarity=0.122 Sum_probs=246.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
++..+.+.+++....|..-..+.+.+. .++...+++.|.+|.|+.+++..+ .++.+.+.+-++.....+.......+.
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 344555778888888999999988876 555567999999999999998755 356777777788888888888889999
Q ss_pred hcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhH--HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 156 EHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSC--RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
+.+.++.|+.+|..++ ..+++.++.++.++...++.. ........+++.+..++ ..+.......-+...+++|...
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence 9999999999999988 899999999999998666421 11112222334333333 3234444455555555666554
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH---hhccCChHHHHH----HHHhCcHHH--HHHHhcCCCh-----
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS---YLSDGTNDKIQA----VIEAGVCPR--LVELLLHSST----- 298 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~---~l~~~~~~~~~~----~~~~~~l~~--L~~lL~~~~~----- 298 (528)
.........++.+.+.-++.......+..++.+++ ++..+++..... ..+.|+.++ +..++++++.
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 22222333445555544444445556666666666 444333322111 112222221 1111111110
Q ss_pred --------------------------------------------------------------------------------
Q 009700 299 -------------------------------------------------------------------------------- 298 (528)
Q Consensus 299 -------------------------------------------------------------------------------- 298 (528)
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------------------------hhHHHHHHHHhHhhcCCcch
Q 009700 299 ------------------------------------------------------------TVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 299 ------------------------------------------------------------~v~~~al~~L~~l~~~~~~~ 318 (528)
.++..||-++-+++..-...
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333211111
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
...+-...+..++++++..+ +..|+..+..+|+|+.-........++..|+|..+..++.+.++.+|..+.|+|.++..
T Consensus 412 ~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 11122345778899999888 99999999999999998777778889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 399 GGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 399 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+++......+...-....+..+.+++|+.++++++..+.|+....+
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 8876666666666667788889999999999999999999987643
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=124.88 Aligned_cols=237 Identities=18% Similarity=0.188 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch
Q 009700 240 VRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 240 ~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 318 (528)
..+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35778899999985 58999999999999987654 46677888899999999999999999999999999999876654
Q ss_pred hHHHhccCChHHHHHHh-cccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLL-TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.. ++. .++.+.+.+ ..+.+..++..++.+|.|++..+.. +.++ .+.+|.++.++..++..+|..++++|.|++
T Consensus 89 ~~--Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 EQ--IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HH--HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 42 222 344555543 3333788999999999999764332 2333 247999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhhhch---hccCCcchhhHHHhhhcc-cHHHHHH
Q 009700 398 SGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGEADK---EAGSTTANVYSEMIDECD-GLDKIEN 472 (528)
Q Consensus 398 ~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~~~~---~~~~~~~~~~~~~l~~~g-~~~~l~~ 472 (528)
. ++.....++..+++..|+.+++.. +.++...++..+.+|.....+.. .......++....+.+.+ ..++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 9 578889999999999999999885 67788888999999876544332 112333555667777777 7789999
Q ss_pred HhcCCCHHHHHHH
Q 009700 473 LQSHDNNEIYEKA 485 (528)
Q Consensus 473 L~~~~~~~v~~~a 485 (528)
|..|+|++|+.+.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999998764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=134.85 Aligned_cols=351 Identities=14% Similarity=0.172 Sum_probs=239.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
.+..+...++.++--.-..+..+++..+-..+. .++|.|+++|.+++ ...++-|..+|..|+.++.+.-+.=..
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wp-----elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGLQHWP-----ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccccccch-----hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 334444444544444444445555544333342 36999999999988 789999999999999977665443211
Q ss_pred ----cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 157 ----HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 157 ----~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.-.+|.++.+.+++++.+|..|+.++..+.-..+..-..-+ ..++..+..+- .+.+++++.+.|.++..|..-.
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 13689999999999999999999999988755443211111 12455555555 7889999999999999999888
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--HHHHHHHHhCcHHHHHHHhcCCC-------------
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLLHSS------------- 297 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~------------- 297 (528)
+......+.++++.++...+..|++|.-.||.....+++.+. +.....+. .++|.|+.-+...+
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccc
Confidence 777777889999999999999999999999999999988752 22222222 35565554433211
Q ss_pred -------------------------------------------hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 298 -------------------------------------------TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 298 -------------------------------------------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
|.+|...+.+|..++....+. +++ -++|.|.+.
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~~ 401 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKEH 401 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHHH
Confidence 344544444454444322211 111 245555566
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-HHHHHHHCCC
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-QIQFLVSQGC 413 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~ 413 (528)
|.+. .-.+|+.+..+++.++.|+....-.-+ ..++|.|+.+|.++.+-||.-.||+|+..+.+.-.+ .-+++.. +
T Consensus 402 L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--v 477 (885)
T KOG2023|consen 402 LSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--V 477 (885)
T ss_pred cCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--H
Confidence 6666 889999999999999987554332222 137999999999999999999999999887643211 1233332 4
Q ss_pred hHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 414 IKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 414 l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..|...+-.++.++++.++.++..+-+...
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 5566666667889999999999988776543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=125.62 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=164.7
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
++.+-+..|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..+|..+++.+++.|+++|.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 4566789999999977669999999999999877 78899999999999999999999999999999999999987765
Q ss_pred HHHHHHhcCChHHHHHhhccc-hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 192 CRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.+..+.. .++.+++.+... -+..++..++.+|.+|+..... ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444433 467777665333 3778999999999999876422 3345678999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHhHhhcC
Q 009700 271 DGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTG 314 (528)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~~l~~~ 314 (528)
.++. ....++..+++..++.++... +..+...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8754 667788888999999999885 677899999999999654
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-14 Score=135.59 Aligned_cols=350 Identities=15% Similarity=0.150 Sum_probs=230.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHH-HHh---cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEE-VIR---AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~---~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
.+|.|.++|.+++...+.-|..+|.+++.... .-.+. ... .-++|.++++.++++ +.+|..|+.|+..+.-..+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa-~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSA-QFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhH-HHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecCc
Confidence 47888889999998899999999999976531 11110 000 236899999999998 9999999999998877443
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.....-+ ...+..+..+-...++++|.+.+.+|.-+....+.- -.-.-.++++.++... ++.++++.-.||.....+
T Consensus 207 qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t-qd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT-QDVDENVALEACEFWLAL 283 (885)
T ss_pred HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc-cCcchhHHHHHHHHHHHH
Confidence 3322222 235666777777789999999999999998666531 1111234567777776 777888999999999999
Q ss_pred cCCCCCCChh----hhHHHHHHHHHHhcCCC-------------------------------------------------
Q 009700 229 CRGKPPAPFD----QVRPALAALQHLIFSSD------------------------------------------------- 255 (528)
Q Consensus 229 ~~~~~~~~~~----~~~~~l~~L~~ll~~~d------------------------------------------------- 255 (528)
+..+ .... .+..++|.|+.-+..++
T Consensus 284 aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 284 AEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred hcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 9885 2222 33566676654332111
Q ss_pred -------HHHHHHHHHHHHhhccCChHHHHHHHHhC----cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 256 -------EEVLTDACWALSYLSDGTNDKIQAVIEAG----VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 256 -------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
..++...+.+|--++ .+.... ++|.|-..|.+++|.+++.++-++|.++.|.-...-.-+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L- 432 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL- 432 (885)
T ss_pred cccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-
Confidence 112222222222222 222223 455555666778999999999999999987643221111
Q ss_pred cCChHHHHHHhcccCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 325 NQGLPRLYQLLTQNYKKSIKKEACWTISNITAG--SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
..+++.++++|.+. .+-||.-+||+|+..+.- ..+ .+..+. .++..|++.+-+++.+|++.||.|+..+-.....
T Consensus 433 peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 433 PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 14788999999998 999999999999998751 111 212221 2555666667788899999999999999887666
Q ss_pred HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 403 EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 403 ~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+...++-. ++..|+..+..-..+-.....+++..+....
T Consensus 510 eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 510 ELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred hhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 66555433 4555555554433333345566777776654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=140.76 Aligned_cols=275 Identities=17% Similarity=0.174 Sum_probs=218.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.|+..|.++++.+|..|+..|..+.. .+.++.|+..|.+++ +.++..|+..|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence 46889999999999999999999987632 235899999998887 999999999998885411
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
...+.|...|.++++.+|..++.+|+.+.... ...++..| .++++.++..++++|..+-.
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence 12367788899999999999999999874222 23466777 78899999999999997621
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
.+.|..++.+++..|+..++.+|..+..... ..++.|..+++++++.++..|+.+|+.+.
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 1346678899999999999999999875432 23678889999999999999999999885
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
... .....+...|.++ ++.||..|+++|+.+.. ...++.|+.+|.+++..||..|+++
T Consensus 804 ~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 804 CPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred Ccc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 421 1224678889888 99999999999998742 1356889999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
|..+. +++. ..+.|...+++.|+.++..+..+|..
T Consensus 862 L~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 862 LTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99962 2333 25667788999999999999988853
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-11 Score=125.61 Aligned_cols=328 Identities=17% Similarity=0.191 Sum_probs=223.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.+++.+.+++...+..+--.+..+... ++..-.+ ++..+.+=|.+++ +.++..|+++++++.. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 567888888888988888887777777654 2221121 4667777788887 8999999999999884 55554
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+ ++.+.+++.++++.+|..|+.++..+....|+. +... .++.+..++ .+.++.++..|+.++..+ ...
T Consensus 114 ~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 PL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred HH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 43 588888999999999999999999998766652 2222 477788888 777889999999999988 221
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+..........+..|.+++...++-.+..++..+..++...+..... ..+++.+..++.+.++.+...|++++..+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11111445666777777778888999999999999888766544311 346777888888888888888888888776
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
.... .-..+++.+..+|.++ ++.+|..++..|..++...+..+. .....+..+..+.+..+|..++..
T Consensus 260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHHH
T ss_pred cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHHH
Confidence 6433 1124567888888877 888888888888888775533221 122223333336778888888888
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhc-CCCChHHHHHHHHHHHHHHHhh
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
|.+++.. ..... +++.|...+ +..+++++..++..+..+....
T Consensus 328 L~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 328 LYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 8888762 22222 344555555 3345556666666665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=134.65 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=217.9
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 192 (528)
....++.|+..|.+++ +.++..|+..|..+.. .++++.|...|.++++.+|..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 3456789999999888 9999999999998753 2467899999999999999999999998853222
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
..+.+...| .++++.++..++.+|..+.... ...++..|.++|+.++..++++|..+-.
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124666777 6788999999999998875321 2356778899999999999999997632
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.+.|..++.++++.++..++.+|+.+..... ..++.|..++.++ ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1346678999999999999999998865322 2366788999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~ 432 (528)
++... + .+++.++..+.+.++.||..|+++|..+.. ...++.|..+|+++++.++..+
T Consensus 801 ~~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHH
Confidence 98432 1 123567788999999999999999987643 1246889999999999999999
Q ss_pred HHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 433 LEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490 (528)
Q Consensus 433 l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~ 490 (528)
..+|..+ ...+ ...+.|.....+++.+|+..|...|+
T Consensus 859 ~~aL~~~-~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRW-PGDP--------------------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcc-CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999885 1111 11356777888999999999988875
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=108.86 Aligned_cols=119 Identities=38% Similarity=0.622 Sum_probs=110.7
Q ss_pred HHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009700 110 EVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 110 ~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~ 189 (528)
.+++.|+++.|+++|.+++ +.++..++++|.+++..+++....+++.|+++.++.+|.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4568899999999999888 899999999999999988999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 190 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+..+...|+++.++..+ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 88888888999999999999 67788999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-10 Score=116.08 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=205.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+.++.+.|.+.+...+..|++.+......+ .+. +.+.+..+.++.+++ .+++.-..-.+.+++...++..-
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence 4566777888888888888887766555543 222 234677788888887 89999999999999886665432
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. ++..|.+=+.++++.+|-.|++++++|-. +...+. .+.++.+.+ .+.++-|++.|+.++..+....
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2 46788888889999999999999999843 222222 456677777 7889999999999999998765
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
|. .....+.++.|..+|.+.|+.|..+|+.+|..+....+.... ...+.+..++..+..-++-.+...+.+|....
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 43 223356778888999999999999999999999876554332 22346777888887766667777777775543
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
...+... ..++..+...|++. ++.|.-+|+.++.++... +++.+..++. .+-++|+.+ .++++++|--++.
T Consensus 248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr 319 (746)
T PTZ00429 248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCK 319 (746)
T ss_pred CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHH
Confidence 2222211 24677888889888 899999999999998753 2333333221 233555555 3456677766666
Q ss_pred HHHHhcC
Q 009700 392 AISNATS 398 (528)
Q Consensus 392 aL~nl~~ 398 (528)
.|.-++.
T Consensus 320 ~I~~i~~ 326 (746)
T PTZ00429 320 NIHALLV 326 (746)
T ss_pred HHHHHHH
Confidence 6654443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-10 Score=116.64 Aligned_cols=260 Identities=13% Similarity=0.077 Sum_probs=185.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.+++.+.++|.+++......+.+++.. .+....+ .++.|.+=+.+++ +.+|-.|++.++++.. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 467788888899999888888788777654 2221111 3777888888888 9999999999999876 44443
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +++.+.+.|.+.++-||..|+.++.++....|+ .+.+.+.++.|..+| .+.++.+..+|+.+|..++...
T Consensus 140 ~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 Y-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 3 357788889999999999999999999876664 445667888888888 7899999999999999998765
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+. ........+..|+..+..-++..+..++.+|........... ..++..+...|++.++.|...|++++.++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 233445666667777766677777777777765432222211 247788889999999999999999999988
Q ss_pred cCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 313 TGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 313 ~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
...+ .....+.. .+...++.++ ++ ++.++..++..|.-+....+
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 6432 22211111 1224455553 44 67788887777766655444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-10 Score=120.57 Aligned_cols=327 Identities=18% Similarity=0.175 Sum_probs=237.2
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 76 SMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 76 ~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+.+.+. +...+..++..+..+...+ .+. .-+.+..++++.+.+ ...+.-+--.+..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444544 6667777777766555443 222 245788899999777 899999988999998877763332
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
++..+.+=|.++++.++..|++++++++ .++..+. .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 4677888899999999999999999997 3333332 467778888 78889999999999999988754
Q ss_pred CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 234 PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.... .. .++.+..++.+.|+.++..|+.++..+ ..++.....++. .++..|..++...++-.+..+++++..++.
T Consensus 147 ~~~~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLVE--DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP-KLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCHH--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH-HHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHHH--HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH-HHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 3211 12 689999999999999999999999999 333322111222 356667777788899999999999999987
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
..+..... ..+++.+..++++. ++.|..+++.++..+... +. .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 66554411 34677889999888 999999999999988653 33 2234788999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 394 SNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 394 ~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
..++... +... . .....+..+..++|..++..+++.|..++....
T Consensus 292 ~~l~~~~-~~~v----~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 292 SQLAQSN-PPAV----F-NQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HHHCCHC-HHHH----G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred HHhhccc-chhh----h-hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 9998854 2221 1 112223333347889999999999998887543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=106.22 Aligned_cols=118 Identities=36% Similarity=0.525 Sum_probs=109.8
Q ss_pred HHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 280 VIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
+++.|+++.++.++.+.++.++..++++|++++...+.....+++.|+++.+.++|.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999999888777888899999999999998 99999999999999999887
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.....+.+.|+++.|++++...+..++..++|+|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-10 Score=110.44 Aligned_cols=323 Identities=14% Similarity=0.178 Sum_probs=231.0
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhc-----CChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 158 GAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSH-----GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 158 g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-----g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+..++.+|.. ..+++.+.++..+..+..+.|.....+.+. ....+++.+| ..++.-+...++.+|+.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 356677777766 668899999999999998887655555543 4677888888 567888999999999998766
Q ss_pred CCCCCh-hhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHH
Q 009700 232 KPPAPF-DQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRT 307 (528)
Q Consensus 232 ~~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~ 307 (528)
.+.... ......++.+...+.+. +...+.-++.++..+...+. ....+.+.++++.|+.+|+.. +..++..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 533222 12233455666666654 46667777788988887765 456677778999999999863 45788999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC------HHHHHHHHHcCcHHHHHHHHccC
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS------RSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
++-++-..+ ........++++.++.+++.....++.+-++.++.|+...+ ......+++.|+.+.+-.+...+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999887555 34455668999999999988768889999999999998732 22344566777666554443332
Q ss_pred --ChHHHHHHHHHH-------HHhc--------------CCCC--------HHHHHHHHHC--CChHHHHhhcC-CCChH
Q 009700 382 --EFEVKKEASWAI-------SNAT--------------SGGT--------REQIQFLVSQ--GCIKPLCDLLV-CPDPR 427 (528)
Q Consensus 382 --~~~v~~~a~~aL-------~nl~--------------~~~~--------~~~~~~l~~~--~~l~~L~~ll~-~~~~~ 427 (528)
|+++....-..- ..++ .+.+ .+....+.++ .+++.|+.+|+ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 555543221111 1111 1111 2344555544 35789999994 67888
Q ss_pred HHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 428 IVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 428 ~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
++..||.=|+.+++..+.+ ...+++.|+-+.+..|++|+|++|+..|...+.++..
T Consensus 370 ~laVAc~Dige~vr~~P~g-----------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRG-----------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccH-----------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999987654 4567799999999999999999999999988887643
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-10 Score=112.94 Aligned_cols=356 Identities=17% Similarity=0.158 Sum_probs=245.7
Q ss_pred CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChH
Q 009700 126 RHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALM 203 (528)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 203 (528)
+.+ ++....|..-..|.+.++++....+++.|+++.++.+++. +.++.....+.+++..+.......+.+.+.+.++
T Consensus 20 ~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 20 HLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred cCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 444 6777888899999999999998899999999999999877 4567776777777777766666778888999999
Q ss_pred HHHHhhccchh-hHHHHHHHHHhhhhcCCCCCCChh---hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH
Q 009700 204 PLLAQLNEHSK-LSMLRNATWTLSNFCRGKPPAPFD---QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA 279 (528)
Q Consensus 204 ~Ll~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 279 (528)
.+++++ .+.+ ..++..++.++.++....+..... ....+++.+..++..+...+...-+....+++... +....
T Consensus 99 ~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~I 176 (678)
T KOG1293|consen 99 KLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLI 176 (678)
T ss_pred HHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhe
Confidence 999999 5555 889999999999998876444332 33555666655555455555555666666666554 34455
Q ss_pred HHHhCcHHHHHHHhcCCChhhHHHHHHHHh---HhhcCCcchhHHH----hccCChHH--HHHHhccc------------
Q 009700 280 VIEAGVCPRLVELLLHSSTTVLVPALRTVG---NIVTGDDTQTQCV----IDNQGLPR--LYQLLTQN------------ 338 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~---~l~~~~~~~~~~~----~~~~~l~~--L~~lL~~~------------ 338 (528)
...+|+.+.+.-++.+.+...+..|+.+++ ++...++.....+ .+.|+.+. +..+++++
T Consensus 177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl 256 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECL 256 (678)
T ss_pred eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHH
Confidence 677788888888877777777888888887 5554444322211 12222211 11111110
Q ss_pred --------------------------------------------------------------------------------
Q 009700 339 -------------------------------------------------------------------------------- 338 (528)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (528)
T Consensus 257 ~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~ 336 (678)
T KOG1293|consen 257 VPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFI 336 (678)
T ss_pred HHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 339 ----------------------------------------------------YKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 339 ----------------------------------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
.+...+..||-++-+++..-......+-
T Consensus 337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~ 416 (678)
T KOG1293|consen 337 CASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK 416 (678)
T ss_pred HHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0111223333333333221111111112
Q ss_pred HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 367 EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 367 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
...+..+|+.++..++..|+..+..+|+|++..-+ .....++..|+++.+..++...++.++..++|+|++++-.+...
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 35678899999999999999999999999987543 34567789999999999999999999999999999998766543
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+ .. +... =+...|..+.++++..|++.+.+++.++-.+
T Consensus 496 ~k-----~~-~~~k----i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 496 EK-----FQ-LLAK----IPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HH-----HH-HHHH----hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 32 11 1212 2356778889999999999999999998776
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-10 Score=108.56 Aligned_cols=320 Identities=13% Similarity=0.076 Sum_probs=221.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHh-----cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009700 74 IPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIR-----AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT 147 (528)
Q Consensus 74 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 147 (528)
...++..+.. ...++....+..+..++... +.....+.+ ......++.+|..++ .-++..|+.+|+.+....
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence 4566666663 45667777777788887763 233344444 245677788888777 789999999999998744
Q ss_pred hhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTL 225 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L 225 (528)
+.........-.++.+...|.+ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +..++.+++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3321111111133455556655 347788889999999976655 8998888889999999996544 678899999999
Q ss_pred hhhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCC------hHHHHHHHHhCcHHHHHHHhcC---
Q 009700 226 SNFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLLH--- 295 (528)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~--- 295 (528)
+-|+...+........++++.++.+++.. .+.+..-++.++.|+...+ ......+++.|+++ ++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCC
Confidence 99988764333333468999999999854 6889999999999998743 22344566666654 5555543
Q ss_pred CChhhHHHHHHHHhHh--------hcC--------------Ccch---------hHHHhc--cCChHHHHHHhcccCchh
Q 009700 296 SSTTVLVPALRTVGNI--------VTG--------------DDTQ---------TQCVID--NQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l--------~~~--------------~~~~---------~~~~~~--~~~l~~L~~lL~~~~~~~ 342 (528)
.++++... +..|... ++. ++.+ ...+-+ ..++..|+++|..+.++.
T Consensus 291 ~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 34433221 1111111 110 1111 111111 246788999996544888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+..-||.=|+.++...|.....+-+.|+=..++++|.++|++||.+|+.|+..+..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888888777789999999999999999999999999987754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-13 Score=104.59 Aligned_cols=89 Identities=44% Similarity=0.642 Sum_probs=59.8
Q ss_pred CCCchHHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchh---hh-hhHHHhhccHHHHHHH
Q 009700 6 GSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTE---AN-ASIEKKLESIPSMVQG 80 (528)
Q Consensus 6 ~~~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~---~~-~~~~~~~~~l~~l~~~ 80 (528)
+...+.|++.||+ |.+++++|+||++..++|||+||++.|.|||+.........+.. .. .........++.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 3467899999999 68999999999999999999999999999999865443321100 00 0011122357899999
Q ss_pred hcCCCHHHHHHHHH
Q 009700 81 VLSENSGLQLEATT 94 (528)
Q Consensus 81 l~s~~~~~~~~a~~ 94 (528)
+.|+|+..++.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C .... |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-10 Score=115.04 Aligned_cols=342 Identities=16% Similarity=0.155 Sum_probs=244.0
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 73 SIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 73 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.+|.|+..|+. .+.++...|+++|..++..- ++....+++.+.||.|+.-|..-...++.++++.+|-.|+. ..-
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RHP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hcc
Confidence 47889999986 46899999999999998875 56677888999999999888765558999999999999998 344
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+++.|++...+.+|+--+..+++.|+.+..|+|..- ++--..+.+ .+|.|..+| ...+....++++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 67889999999999998888999999999999999432 222234444 688888888 78888899999999999887
Q ss_pred CC-CCCCh---hhhHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh----
Q 009700 231 GK-PPAPF---DQVRPALAALQHLIFSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST---- 298 (528)
Q Consensus 231 ~~-~~~~~---~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---- 298 (528)
.. +.+.. ..-.+++....+++...+ ..+..-.++.+..++.+.+-....+...++...|..+|.....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 76 33322 122567777777776442 3445556777777887777666666666777766666643110
Q ss_pred -----------hhHHHHH---------------------------------------------------HHHhHh-----
Q 009700 299 -----------TVLVPAL---------------------------------------------------RTVGNI----- 311 (528)
Q Consensus 299 -----------~v~~~al---------------------------------------------------~~L~~l----- 311 (528)
.+.+... +++..+
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0000000 111100
Q ss_pred --------hcC---------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCcHH
Q 009700 312 --------VTG---------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIE-ANIIA 372 (528)
Q Consensus 312 --------~~~---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~ 372 (528)
-.+ .++..+.++ ..+++.|+++..+.-++.||..++.+|..+.. .+.+.++.++. .++-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 000 000011111 13678888888877789999999999999876 57888888885 44555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
.+-.+|.+.+..|..-|+...--+...-+.-+...+...|++..+-++..
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 66678888888887777777666666555566778888888888888776
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-10 Score=110.59 Aligned_cols=364 Identities=16% Similarity=0.221 Sum_probs=243.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH---HHHHh--
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT---RVVIE-- 156 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~i~~-- 156 (528)
+++|.+++..|+.+|.++.+-. .......+...+++.-+.-+.+++ +++..+++...++++...-+.. ....+
T Consensus 227 q~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~~-deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSDN-DEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4678899999999999998865 556666666667888888888877 8999999999998886321100 00111
Q ss_pred -------------cCChHHHHHhhC---------------------------------------------CCCHHHHHHH
Q 009700 157 -------------HGAVPKFVQLLG---------------------------------------------SASDDVREQA 178 (528)
Q Consensus 157 -------------~g~i~~L~~lL~---------------------------------------------~~~~~i~~~a 178 (528)
.+++|.|+++|. +++..-++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHH
Confidence 145677777764 2345556666
Q ss_pred HHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCH
Q 009700 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDE 256 (528)
Q Consensus 179 ~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~ 256 (528)
+.++|.+-......+..-+..++++.++.++ .++..-++..+.|+|..++..-|... .....+.++.++.-|. +.+
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DeP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCc
Confidence 6677766655444444445567889999999 58888889999999999998875332 2334566666666554 468
Q ss_pred HHHHHHHHHHHhhccCChHHH---------HHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 257 EVLTDACWALSYLSDGTNDKI---------QAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~---------~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
.+..++||++.+|++...+.. ..+... ++..|++.-.. .....|..|..+|+.++...+......+.
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~-ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA-IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH-HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999985422110 011111 33333333332 44678999999999999877654322221
Q ss_pred cCChHHHHH---------HhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHH
Q 009700 325 NQGLPRLYQ---------LLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASW 391 (528)
Q Consensus 325 ~~~l~~L~~---------lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 391 (528)
++...+.. .+.... -..++...|.+|..+.+.....+....+ .++..+++++.++ +.-+..+|..
T Consensus 542 -~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~l 619 (859)
T KOG1241|consen 542 -KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFL 619 (859)
T ss_pred -HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCCccccchHHHHH
Confidence 22222222 232220 1357777888888887643334444443 4788899999884 5678889999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhc-CCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI 461 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l 461 (528)
+++.++..-.+.+.+|+-. +.++|..-| +..+..+...+...+..+++.-+.. .++|+..+
T Consensus 620 aV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~-------i~py~d~~ 681 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPA--FKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD-------ILPYCDEL 681 (859)
T ss_pred HHHHHHHHHhHhHHHHHHH--HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHH
Confidence 9999888766778888655 778887777 5567778888888888888766543 56677666
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-10 Score=110.03 Aligned_cols=327 Identities=18% Similarity=0.183 Sum_probs=222.3
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 74 IPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 74 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+..++...... +..+|+.|+.+|.+-+...+.....+.-..=++...++.-++++ .+++..|..||..|.+-..+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666643 45689999999987765432112222222334555567767777 8999999999999999666666
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH----HH--------------HHHhcCChHHHHHhhccc-
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC----RD--------------LVLSHGALMPLLAQLNEH- 212 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~----~~--------------~~~~~g~i~~Ll~ll~~~- 212 (528)
..-+....++.-+.-+.++++++.-+++...+++|...-+. .+ .-.-.+++|.|+++|.+.
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 66565566777777888999999999999999998532110 00 001124677788888541
Q ss_pred -----hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 213 -----SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 213 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
++......+..+|.-+++.... ..+..++|.+-.-++++|..-++.+..+++.+..++......-+-.+.++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 2334555555555555443211 23447788888888999999999999999999988765554445557899
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH----
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI---- 362 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~---- 362 (528)
.++.++.+++..++..+.|++|.++.+.+... ........++.++.-|.+ .|.+-..+||++.+++.+..+..
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999998888899999999999998776422 122233556667777755 68999999999999984222111
Q ss_pred -----HHHHHcCcHHHHHHHHcc---CChHHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 363 -----QAVIEANIIAPLVYLLQH---AEFEVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 363 -----~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
..+.+ .++..|+..-.. .+..+|..|..||..++...+.+....
T Consensus 488 qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 488 QTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred CCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 01111 134444444333 357899999999999999876655444
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=115.78 Aligned_cols=351 Identities=14% Similarity=0.122 Sum_probs=231.9
Q ss_pred HHHhhcc---HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHH
Q 009700 67 IEKKLES---IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTN 142 (528)
Q Consensus 67 ~~~~~~~---l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~ 142 (528)
+.+++++ +.+++..++++.+..+.+.+..+.++.+.-+...+++-.+..++..++..++.++ ...+-......+.+
T Consensus 708 ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~ 787 (1172)
T KOG0213|consen 708 IAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN 787 (1172)
T ss_pred HHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 3445553 6778888889989899998888888887654444555555556666676666544 23344555555555
Q ss_pred HhcCC-hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH--HHHHhcCChHHHHHhhccchhhHHHH
Q 009700 143 IASGT-SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR--DLVLSHGALMPLLAQLNEHSKLSMLR 219 (528)
Q Consensus 143 l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~Ll~ll~~~~~~~~~~ 219 (528)
-..+. .... ..++..++..|.+.++.+|++|+..++.++.--..+. +.+-..|. .|...| ....+++.-
T Consensus 788 ~lg~r~kpyl-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLg 859 (1172)
T KOG0213|consen 788 ALGGRVKPYL-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLG 859 (1172)
T ss_pred HHhhccccch-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHH
Confidence 43321 1111 1245677788999999999999999999973322221 12222232 245566 666778777
Q ss_pred HHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh
Q 009700 220 NATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298 (528)
Q Consensus 220 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 298 (528)
..+.++..++..- -.....-+.+++|.|...|++..+.|+++++..++.++...++.+..---..+.=.|+.+|+..+.
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7776666655332 122233357899999999999999999999999999998877643322222355568888999999
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
.++..|..++|.|+.. +-...++..|+.-|+.. +...|.-...+|+-.+..+.. -.++|.|+.-.
T Consensus 940 ~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneY 1004 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEY 1004 (1172)
T ss_pred HHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhc
Confidence 9999999999999863 22223445555555544 333333333333333322221 13788888888
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 379 QHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 379 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
..++..|+.-++.+++.+......-...|+.. +.+.|.+.|...|+.-+..+..++..+.-.
T Consensus 1005 rtPe~nVQnGVLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1005 RTPEANVQNGVLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 88899999999999999987543334445443 677788888888988888888888887754
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-07 Score=94.92 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=167.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
-+.++.+|.+.-+-++..|+..+.++.-.. ++..+ ..+|.|++-|.++| |.++..|+.+++.++..+|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence 467788899999999999999888887653 22222 24899999999999 999999999999999988766432
Q ss_pred HHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh--cC
Q 009700 154 VIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF--CR 230 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l--~~ 230 (528)
.-|.+.++|.. .+.=+....+..+++++--.|..... .+++|..++....-.++...|..++..- +.
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 45888888865 44445566788999998777765544 6899999996555666777776665433 33
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
+.+ .....+.-+++.|--++.+.|+.+..-++.+++.+....+..++. .-+.++.+|.+.+++++..|+..+..
T Consensus 289 g~~-d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GMS-DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCC-CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence 322 334455678888888999999999999999999999877755544 34678899999999999999999988
Q ss_pred hhcCC
Q 009700 311 IVTGD 315 (528)
Q Consensus 311 l~~~~ 315 (528)
++...
T Consensus 363 mVskk 367 (877)
T KOG1059|consen 363 MVSKK 367 (877)
T ss_pred Hhhhh
Confidence 88643
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-08 Score=95.61 Aligned_cols=322 Identities=14% Similarity=0.062 Sum_probs=222.6
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHH-------hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVI-------RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~ 144 (528)
.+..++..+... .++...-.+..+..+++.. .....++ ..-.-+.++.+|...+ .-+...+.++++.++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 466777777753 3556666777788888774 3322222 1234667788888887 778887999999988
Q ss_pred cCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh-ccchhhHHHHHHH
Q 009700 145 SGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL-NEHSKLSMLRNAT 222 (528)
Q Consensus 145 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll-~~~~~~~~~~~a~ 222 (528)
.-...........-....|...+++ .+.+....|+++|..+....+ +|..+....++..++..+ ....+..++.+.+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7322211110000012344445555 677888899999999987665 788888888889999888 4555788999999
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCh------HHHHHHHHhCcHHHHHHHhcC
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~ 295 (528)
.+++.|+..++........+.++.|..++++. .+.|..-++.++.|+++..+ +....++..++.+.+-.+...
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998865444444568899999998854 68899999999999998774 344455665555444444332
Q ss_pred --CChhhHHHHHHHHhH-------hhcC--------------Ccc---------hhHHHh--ccCChHHHHHHhcccCch
Q 009700 296 --SSTTVLVPALRTVGN-------IVTG--------------DDT---------QTQCVI--DNQGLPRLYQLLTQNYKK 341 (528)
Q Consensus 296 --~~~~v~~~al~~L~~-------l~~~--------------~~~---------~~~~~~--~~~~l~~L~~lL~~~~~~ 341 (528)
.++.+....-..-.. +++. ++. ....+. +..++..|+.+|..+.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 344333322111111 1111 110 011111 124788899999888679
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 342 SIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 342 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.+..-||.-|+......|+....+.+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999888899999999999999999999999999987765
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-07 Score=94.90 Aligned_cols=326 Identities=16% Similarity=0.193 Sum_probs=238.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSP--- 190 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~--- 190 (528)
-|+.|++-+.+..-.+-|..|++.|..++. +++..+... ++++|+..|+. .++++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 489999998877667889999999999987 677666654 58889999977 679999999999999985431
Q ss_pred ---h----------HHH-HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhh---hHHHHHHHHHHhcC
Q 009700 191 ---S----------CRD-LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ---VRPALAALQHLIFS 253 (528)
Q Consensus 191 ---~----------~~~-~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~l~~L~~ll~~ 253 (528)
. +.+ .+...+.|..++..+ ...|-.++.++...++++....|...... ...++..|+.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 112 233456677788888 77788999999999999988875433222 25678889999998
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHhHhhcCCcchhHHHhccCChH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS----STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLP 329 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 329 (528)
.-+.++.+++..|..++.+++...+.+.-.+++.+|..++... ..-|...|+..|-|+...+......+.+.+.++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8899999999999999998876555555568999999999763 235788899999999998888888889999999
Q ss_pred HHHHHhcccC--ch--------hH--HHHHHHHHHHHhc-CC----HHHH-HHHHHcCcHHHHHHHHccC--ChHHHHHH
Q 009700 330 RLYQLLTQNY--KK--------SI--KKEACWTISNITA-GS----RSQI-QAVIEANIIAPLVYLLQHA--EFEVKKEA 389 (528)
Q Consensus 330 ~L~~lL~~~~--~~--------~v--~~~a~~~L~nl~~-~~----~~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 389 (528)
.|.++|.-.. +. ++ ...++.++..+.. ++ ..+. +.+...+++..|+.++.++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885431 21 11 2345555555554 22 2333 3455788999999998877 47899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHC----C------ChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhch
Q 009700 390 SWAISNATSGGTREQIQFLVSQ----G------CIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~----~------~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
..++.+.+.++...+ .++.+. + ++-.++.+..+ .....+..++.++..++-...+.+
T Consensus 338 iitvAevVRgn~~nQ-~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 338 IITVAEVVRGNARNQ-DEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred HHHHHHHHHhchHHH-HHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 999999998653322 333321 1 12223333333 455678888888888887665543
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-07 Score=92.94 Aligned_cols=324 Identities=18% Similarity=0.190 Sum_probs=239.8
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCh-
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-DLPQLQFEAAWALTNIASGTS- 148 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~- 148 (528)
+.|+.|+..+.+. -.+-|..|+..|..+... .+..+... +++.|++.|..+ .++++...++..+.++.+..+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4688999888864 467899999999877543 34444444 478889888754 368999999999999888442
Q ss_pred -----hh----------HHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHh-cCChHHHHHhhc
Q 009700 149 -----EH----------TRVVI-EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLS-HGALMPLLAQLN 210 (528)
Q Consensus 149 -----~~----------~~~i~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~-~g~i~~Ll~ll~ 210 (528)
+. .+.++ ..+.|..++..+...+-.+|..++..|.++.... ++.++.+.. .-+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 22333 3578999999999999999999999999987554 456666554 34688999999
Q ss_pred cchhhHHHHHHHHHhhhhcCCCCCCChh-hhHHHHHHHHHHhcCC---C-HHHHHHHHHHHHhhccCChHHHHHHHHhCc
Q 009700 211 EHSKLSMLRNATWTLSNFCRGKPPAPFD-QVRPALAALQHLIFSS---D-EEVLTDACWALSYLSDGTNDKIQAVIEAGV 285 (528)
Q Consensus 211 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 285 (528)
.+..+.++..++..|+.|.++.+..... ...+++..|..++... | .-|..+++..+.||..++..+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 7778889999999999999998665554 4488999999999754 3 358899999999999988888888888899
Q ss_pred HHHHHHHhcC---CC-----hh-----hHHHHHHHHhHhhcCCc-----ch-hHHHhccCChHHHHHHhcccC-chhHHH
Q 009700 286 CPRLVELLLH---SS-----TT-----VLVPALRTVGNIVTGDD-----TQ-TQCVIDNQGLPRLYQLLTQNY-KKSIKK 345 (528)
Q Consensus 286 l~~L~~lL~~---~~-----~~-----v~~~al~~L~~l~~~~~-----~~-~~~~~~~~~l~~L~~lL~~~~-~~~v~~ 345 (528)
+|+|.++|.. .+ |. -...++.++..++.-.. .+ ...+..++++..|..++-++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988764 22 21 13346677776664321 12 235667889999999887763 578999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC----------cHHHHHHHHcc-CChHHHHHHHHHHHHhcCCCC
Q 009700 346 EACWTISNITAGSRSQIQAVIEAN----------IIAPLVYLLQH-AEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 346 ~a~~~L~nl~~~~~~~~~~l~~~~----------~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~ 401 (528)
++..+++++..++......+.+.. ++-.++.+..+ ..+..|..+.+++..+...+.
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 999999999998888777776521 11122233333 357889999999998887543
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-08 Score=90.38 Aligned_cols=280 Identities=13% Similarity=0.140 Sum_probs=195.1
Q ss_pred ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh-hhHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHH
Q 009700 201 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD-QVRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 201 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
.-.+.+.++ ...+.-+.....|+++.++...+..... ...-....|-..+++ .+.+...-+.++|..+...+. ...
T Consensus 115 ~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~ 192 (442)
T KOG2759|consen 115 EWLSFLNLL-NRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRY 192 (442)
T ss_pred chHHHHHHH-hcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhh
Confidence 356778888 6667777777899999888765333222 222334445555555 567777788889988887765 444
Q ss_pred HHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 279 AVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.++..+++..++..+.+ .+-.++...+.|++-++-.. ...+.+...+.++.|..++++....+|-+-++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55556677778777733 45678888999999887644 4445666779999999999887678899999999999997
Q ss_pred CCH------HHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHH----------HHHh-----------cCCCC------
Q 009700 357 GSR------SQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWA----------ISNA-----------TSGGT------ 401 (528)
Q Consensus 357 ~~~------~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~a----------L~nl-----------~~~~~------ 401 (528)
..+ .....++..++.+.+-.+-..+ |.++....-.. |+.+ ..+.+
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 553 4445566666666555444332 45544322211 1111 11111
Q ss_pred --HHHHHHHHHC--CChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC
Q 009700 402 --REQIQFLVSQ--GCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH 476 (528)
Q Consensus 402 --~~~~~~l~~~--~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~ 476 (528)
.+.+..+.++ .+++.|+.+|+.+ ||.+..+|+.=|..+.+..+.+ ...+++.||-+.+..|.+|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-----------k~vv~k~ggKe~vM~Llnh 420 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-----------KAVVEKYGGKERVMNLLNH 420 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-----------hHHHHHhchHHHHHHHhcC
Confidence 2344555544 5689999999864 5888899999999999988764 5678899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 009700 477 DNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 477 ~~~~v~~~a~~ii~~~~~ 494 (528)
+|++|+.-|...+.++..
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 999999999888777643
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=93.98 Aligned_cols=189 Identities=20% Similarity=0.232 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
.+.+-+..++.-|..++..-+ +...++..|+...++..+.+.+..+|..|+++||.++.+++...+.+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 356777788888888886644 5677888899999999999999999999999999999999998889999999999999
Q ss_pred HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc--CChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH--AEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
.|.++.+..+|..|+++++.+..+++.....+...+....|..++.+ .+..++..|+..+..++.... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 99977577888999999999999999999999988889999999999 578889999999999988532 333344566
Q ss_pred CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 412 GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++...+..+..+.+.++.+.++.++...+..-.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 778888888888888888888888877776544
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-08 Score=92.35 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=153.2
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+.+++.+..|+..|..++-. -++...++..|+++.++.++.+++ ..++..|+|+++.++..+|.....+++.|+++.
T Consensus 94 s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 56788899999999988765 677888899999999999999988 999999999999999999999999999999999
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc-hhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 163 FVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 163 L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
|+..|.+ ++..++..|+.+++.+....+.....+...++...|...+... .+..+++.++..+..+............
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999987 4567889999999999999888888888888899999999433 6788899999999999987633333332
Q ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 241 -RPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 241 -~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
.+.-..+..+..+.+.++.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3444455566666777887777777665544
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-09 Score=99.16 Aligned_cols=223 Identities=18% Similarity=0.250 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHHh------CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccC
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ 326 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 326 (528)
+.++++..+++..+..+....+...+.+... .....++.++.+++..+...|+++++.+....+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 4688999999999999988777666665552 3678888899999999999999999999987765443322 34
Q ss_pred ChHHHHHHhcc----cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH------cc-CChHHHHHHHHHHHH
Q 009700 327 GLPRLYQLLTQ----NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL------QH-AEFEVKKEASWAISN 395 (528)
Q Consensus 327 ~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~-~~~~v~~~a~~aL~n 395 (528)
.++.+++++.+ + +..++..|+.++.++.. .+..+..+++.++++.+..++ .+ ....++-+++.++.-
T Consensus 147 ~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 55666666654 4 56778999999999975 788888888999999999999 22 257788899999999
Q ss_pred hcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh
Q 009700 396 ATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ 474 (528)
Q Consensus 396 l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~ 474 (528)
++. +++.+..+.+.++++.|+++++. ...++++.++.+|.|++....+. +...+-.+|++..++.|+
T Consensus 225 LSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 225 LSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------NIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT----------HHHHHHHH-HHHHHHHHH
T ss_pred Hhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH----------HHHHHHHccHHHHHHHHh
Confidence 988 67888999988999999999875 67789999999999999876542 455666899999999997
Q ss_pred --cCCCHHHHHHHHHHHH
Q 009700 475 --SHDNNEIYEKAVKLLE 490 (528)
Q Consensus 475 --~~~~~~v~~~a~~ii~ 490 (528)
.-+|+|+.+.-..+-+
T Consensus 293 ~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 293 ERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp SS--SSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 4578888876655543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=105.01 Aligned_cols=266 Identities=16% Similarity=0.131 Sum_probs=178.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH--HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCC
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC--RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~ 235 (528)
++..++.+|.++.+.+|+.|+...+.++.--..+ -+.+...|. .|..-| ....+++.-..+.+++.+...- -..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5677888999999999999999988886221111 112222232 244455 5566777666666665554322 111
Q ss_pred ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 236 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
...-+.+++|.|...|++....+..+.+..++.++...++.+..---..+.=.|+..|.+.+.+++..|..++|.++..-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 12235789999999999999999999999999999887765432222235556888899999999999999999988632
Q ss_pred cchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHH
Q 009700 316 DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395 (528)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 395 (528)
. ...++..|+.-|+.. +...|.-...+|+-.+..+.. -.++|.|+.=...++..|+.-++.+++.
T Consensus 762 G-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 762 G-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred C-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 2 223445566656554 333333333344433321111 2378888877788899999999999999
Q ss_pred hcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 396 ATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 396 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..........|+.. ..+.|-+.|...|+.-+..+...+..+.-.+.
T Consensus 827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 987554455556544 56777888888999888888888888776543
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-07 Score=94.37 Aligned_cols=329 Identities=16% Similarity=0.177 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHH-----hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVI-----RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~-----~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 161 (528)
+-...++.+|+++++. +|....++ --|.++.+..+|....++.++..|+.++..++. +.++...+...|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3567789999999987 44332222 247788888888876658999999999988887 888999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC---CCCChh
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK---PPAPFD 238 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~ 238 (528)
.|+.+|.+ -|..|+.++..|..+++... ......+.|++..++.++..+.+...+..+...+..+..++ |...+.
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 99999976 47799999999999987665 45556788999999999988889999999999999998876 322222
Q ss_pred hhHHHH-----------HHHHHHhcC--CCHH------HHHHHHHHHHhhcc--------CC------hHH---------
Q 009700 239 QVRPAL-----------AALQHLIFS--SDEE------VLTDACWALSYLSD--------GT------NDK--------- 276 (528)
Q Consensus 239 ~~~~~l-----------~~L~~ll~~--~d~~------v~~~a~~~l~~l~~--------~~------~~~--------- 276 (528)
.+..+- ...++++.. ++++ .+...-..+..+.. ++ ++.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 222111 223344432 1222 11111112222210 00 000
Q ss_pred ---------HHHH------------HHhCcHHHHHHHhcCCChh--hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 277 ---------IQAV------------IEAGVCPRLVELLLHSSTT--VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 277 ---------~~~~------------~~~~~l~~L~~lL~~~~~~--v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
...+ +-.++++.+.+++..+++. ....-..++..+....+...+.+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0000 1113455566666554432 2222334445555666666667777899999999
Q ss_pred HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCC
Q 009700 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGC 413 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 413 (528)
.+... +..+-+.|..+|-.++. +.-..+.+.....+..++..|...- ...--|+.+|..+......+........|+
T Consensus 2055 Am~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred HHHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 99887 77777999999999966 5556666666666666776665543 344588899999888766677777788999
Q ss_pred hHHHHhhcCC
Q 009700 414 IKPLCDLLVC 423 (528)
Q Consensus 414 l~~L~~ll~~ 423 (528)
++.|+.+|++
T Consensus 2132 vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2132 VPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHhcc
Confidence 9999999976
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-07 Score=89.65 Aligned_cols=355 Identities=13% Similarity=0.118 Sum_probs=220.0
Q ss_pred cHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLSE-------NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.+|.++++|..+ |...-..|..+|.-++..- -+.+.+ .++...-+-+.+++ -.-+..|+.+++.+..
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~-pVl~FvEqni~~~~-w~nreaavmAfGSvm~ 395 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMR-PVLGFVEQNIRSES-WANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHH-HHHHHHHHhccCch-hhhHHHHHHHhhhhhc
Confidence 578888888752 2345555555555443221 111111 13333344556666 5678889999999998
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--chhhHHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATW 223 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~~~~a~~ 223 (528)
+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+ ..+-..|.++..+..+.. .+.+.+..+++|
T Consensus 396 gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 396 GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 755544443335688999999988888899999999999986644 345556666665544322 235677789999
Q ss_pred HhhhhcCCCCCCC---hhhhHHH----HHHHHHHhc--CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH----
Q 009700 224 TLSNFCRGKPPAP---FDQVRPA----LAALQHLIF--SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV---- 290 (528)
Q Consensus 224 ~L~~l~~~~~~~~---~~~~~~~----l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~---- 290 (528)
...||..+-+... ...+... +..|++... .++...+..+..+|+.+....++....++. |+.....
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl~ 551 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKLD 551 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHH
Confidence 9999988763322 1222333 333333222 345667778888888776654433322221 1222211
Q ss_pred -------HHhcCC----ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 291 -------ELLLHS----STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 291 -------~lL~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
+.+... -.+++.+-+..|..+........+.+ ...++..++.+|.+.....+-.....+|++++..-.
T Consensus 552 ~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 552 ECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
Confidence 112211 13456667777777765544433222 224677888899887334456678889999987544
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHH
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLE 437 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~ 437 (528)
+...... ..++|.|.+.|...+..+...|...++.++..-+.+...| ...++..|+++|.++ +.++.-.+|.++.
T Consensus 631 e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvFg 707 (858)
T COG5215 631 ERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVFG 707 (858)
T ss_pred HHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHHH
Confidence 5444333 4599999999999999999999999999987544444443 334678888988875 3345555566665
Q ss_pred HHHH
Q 009700 438 NILK 441 (528)
Q Consensus 438 ~i~~ 441 (528)
-|..
T Consensus 708 DIAl 711 (858)
T COG5215 708 DIAL 711 (858)
T ss_pred HHHH
Confidence 5554
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=96.52 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=157.8
Q ss_pred ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHh------cCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 159 AVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLS------HGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 159 ~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
....++.+|+. +++++.+.++..+..+..+.+...+.+.. .....++++++ ..+|..+...++..|..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 34455555543 67999999999999999888876666554 23578888877 67799999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcC----CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-----cC--CChh
Q 009700 231 GKPPAPFDQVRPALAALQHLIFS----SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----LH--SSTT 299 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~ 299 (528)
..+........+.++.++..+.+ ++.+++..++.++..+... +.....+.+.++++.+..++ .+ ....
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 87555554335666666666654 4566778899999999865 45777788889999999999 22 3467
Q ss_pred hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll 378 (528)
++..++.|++-++-. +.....+.+.++++.+..+++.....++.+-++.++.|+....+. ....++..|+++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 888999999988764 444556778889999999998876889999999999999975443 677777887777766655
Q ss_pred ccC--ChHHHHHH
Q 009700 379 QHA--EFEVKKEA 389 (528)
Q Consensus 379 ~~~--~~~v~~~a 389 (528)
... |+++....
T Consensus 293 ~rk~~Dedl~edl 305 (312)
T PF03224_consen 293 ERKWSDEDLTEDL 305 (312)
T ss_dssp SS--SSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 443 67766544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-07 Score=90.35 Aligned_cols=297 Identities=15% Similarity=0.141 Sum_probs=171.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..+.+.|++.+.-++-.|+.+|.++.+. +.+.. +.|-..++|++.+ +-++..|+.|...+....|+..+.+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence 4455566777777888888888887654 23332 4677778888877 8888888888888877665554433
Q ss_pred --------Hh--cC----ChHHHHHhhCCC------CHHHHHHHHHHHHHhhCCC--hhH-----HHHHHhcCChHHHHH
Q 009700 155 --------IE--HG----AVPKFVQLLGSA------SDDVREQAVWALGNVAGDS--PSC-----RDLVLSHGALMPLLA 207 (528)
Q Consensus 155 --------~~--~g----~i~~L~~lL~~~------~~~i~~~a~~~L~nl~~~~--~~~-----~~~~~~~g~i~~Ll~ 207 (528)
.+ .| .+..+..++... ..++...-+..|-++.... |++ .+.++.-. +-.+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 22 23 333444444331 1234555556666665322 111 11111100 122334
Q ss_pred hhccchhhHHHHHHHHHhhhhcCCCC-CCC--hhh-----------------hHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 208 QLNEHSKLSMLRNATWTLSNFCRGKP-PAP--FDQ-----------------VRPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 208 ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~--~~~-----------------~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
+| ...+.+.-.....+|..+++... ... ... ..-++..|-++|.+.|..++.-++..|.
T Consensus 260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 44 34455555555566666555431 111 011 1233455666666667777777777777
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHH
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEA 347 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 347 (528)
.+...++...+. --..++++|++++..++..|+..+-.++..+.- .. ++.-|+.+|.+. ++.++...
T Consensus 339 r~V~~d~~avqr-----Hr~tIleCL~DpD~SIkrralELs~~lvn~~Nv--~~-----mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 339 RVVQQDPTAVQR-----HRSTILECLKDPDVSIKRRALELSYALVNESNV--RV-----MVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred hhhcCCcHHHHH-----HHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH--HH-----HHHHHHHHHHhc-cHHHHHHH
Confidence 766655533332 234688999999999999999988888764432 22 345788899888 99999998
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 348 CWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 348 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
+.-+..++.......+. .|..+..++...-.-|+..+...+..++..+
T Consensus 406 as~I~~laEkfaP~k~W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKRW-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHhcCCcchh-----HHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 88888887632221111 2344555555544444444444444444433
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-07 Score=90.33 Aligned_cols=364 Identities=14% Similarity=0.161 Sum_probs=215.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH------
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI------ 155 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~------ 155 (528)
+++|.+++..|..+|.++..-. ....+...+.-+.....+.+++++ .++..+|+.....++...-+.--...
T Consensus 231 q~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~p 308 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVP 308 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCc
Confidence 4678899999999999988764 455665666666677788889988 89999999888777763211111111
Q ss_pred ----------hcCChHHHHHhhCC---------------------------------------------CCHHHHHHHHH
Q 009700 156 ----------EHGAVPKFVQLLGS---------------------------------------------ASDDVREQAVW 180 (528)
Q Consensus 156 ----------~~g~i~~L~~lL~~---------------------------------------------~~~~i~~~a~~ 180 (528)
-..++|.|+++|.. ++..-|+.++.
T Consensus 309 ~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 309 AQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHH
Confidence 12367888888853 12222344444
Q ss_pred HHHHhhCCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHH
Q 009700 181 ALGNVAGDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEE 257 (528)
Q Consensus 181 ~L~nl~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~ 257 (528)
++|.+-.+.. .++..++ ...+|.+...+ .++..-++..+.|++..++.+-+... ...+.+.+.....-+ .+.+.
T Consensus 389 AfGSvm~gp~~~~lT~~V-~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl-~D~p~ 465 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIV-PQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGL-MDCPF 465 (858)
T ss_pred HhhhhhcCccHHHHHhhH-HhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhh-hccch
Confidence 4444432221 1222222 23455566666 56666788999999999987642111 011111222211111 24678
Q ss_pred HHHHHHHHHHhhccCChHHHHH---HHHh---CcHHHHHHHh--cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChH
Q 009700 258 VLTDACWALSYLSDGTNDKIQA---VIEA---GVCPRLVELL--LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLP 329 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~---~~~~---~~l~~L~~lL--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 329 (528)
+..+++|...+++++-...... ++.. .++..|++.- ...+...|..+..+||.+....++....++ .|+..
T Consensus 466 ~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~ 544 (858)
T COG5215 466 RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYD 544 (858)
T ss_pred HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHH
Confidence 8899999999998764433211 1111 1222232221 124566788888999998876655332221 23333
Q ss_pred HHHH-----------HhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC-hHHHHHHHHHHH
Q 009700 330 RLYQ-----------LLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE-FEVKKEASWAIS 394 (528)
Q Consensus 330 ~L~~-----------lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~ 394 (528)
...+ .|.... ..+++..-+..|..+.+..+..+...- ..++..++++|.+.+ .-+-..+..+++
T Consensus 545 ~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 545 YTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 3322 222220 235666667777766654443333322 236778889998874 456677888898
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh
Q 009700 395 NATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI 461 (528)
Q Consensus 395 nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l 461 (528)
++...-...+-+|+ ..++|.|...|+..|..+...+...+..+...-+.. -++|+..+
T Consensus 624 al~~sl~e~Fe~y~--~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d-------f~~y~d~~ 681 (858)
T COG5215 624 ALSTSLEERFEQYA--SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD-------FNIYADVL 681 (858)
T ss_pred HHHHHHHHHHHHHH--hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHH
Confidence 88874434444443 348999999999999999888888888888754432 45677666
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=98.14 Aligned_cols=270 Identities=17% Similarity=0.199 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..|+.|....-..-+..+.|+.+ +|..++.|-+ +--+..|+..|+.+..-.+-....-+.-|+.|+++++
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL 520 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL 520 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 45677777766666666666654 6777776654 3568889999999998778888888888999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch--hhHHHHHHHHHhhhhcCCCCCCChhhh-HHH
Q 009700 167 LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPAPFDQV-RPA 243 (528)
Q Consensus 167 L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~ 243 (528)
|+++-.+++..-+.+...|..-++.++..+++.++-..+++.|..++ +++-+..++.+|+.++.+.+..+.... .++
T Consensus 521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l 600 (1387)
T KOG1517|consen 521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL 600 (1387)
T ss_pred hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence 99999999999999999998777888888888888888888884423 457888999999999998754444333 566
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC----Ccch
Q 009700 244 LAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG----DDTQ 318 (528)
Q Consensus 244 l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~~ 318 (528)
+...+..|.++ .+-++..+|-+|+.|-.+.++..=.-...+..+.|..+|.++-++||..|+.+||.+..+ .+++
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 77777888774 577899999999999877664433334456889999999999999999999999999875 3333
Q ss_pred hHHH------------hccCCh---HHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 319 TQCV------------IDNQGL---PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 319 ~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
...+ ++..+. ..++.+++.+ .+-++.+..-+++.+..+...+.....-
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 3222 222222 3567777888 9999999999999998876666554443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-06 Score=85.17 Aligned_cols=341 Identities=16% Similarity=0.120 Sum_probs=228.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
++..|..-+..+. +.+|.....||..+..... .... ..+.+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~-~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSK-GLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhh-ccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 5778888888888 8999999988887765211 1111 12467788888888888899999999998866543 45
Q ss_pred HHhcCChHHHHHhhccchhhHHHH-HHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLR-NATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 274 (528)
+.+.+++..+-..+ .+......+ .+..+.-.++..-.......+...+|.++..+.+....++..+..+..-+...-+
T Consensus 170 ~~~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 56677888888887 443333333 3444444444332233334456777777777777788888888777766544322
Q ss_pred -HHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 275 -DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 275 -~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
.... -+++.++.-+....|.....++..+|.++...+.+.. ..-..++|.+.+.|.++ ++++|+.+..++..
T Consensus 249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLK 321 (569)
T ss_pred cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 1111 1455555555555888999999999999988887764 44457999999999999 99999999999999
Q ss_pred Hhc--CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC--CCCHHHHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 354 ITA--GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS--GGTREQIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 354 l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~--~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
++. .+++ ++ .++|.|++.+.++...+. ++...|+.-.. .-+..-+.. +++.|.+-+...+..+.
T Consensus 322 ~~svidN~d-I~-----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 322 FGSVIDNPD-IQ-----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHhhccHH-HH-----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhh
Confidence 986 3444 32 268899999988764443 33333332211 111111121 24555566667777888
Q ss_pred HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 430 TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
..+..++.|++..-++.+. .-+|...+ +..|+.......|+++..+...+....
T Consensus 390 r~t~~IidNm~~LveDp~~-----lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKD-----LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred hhHHHHHHHHHHhhcCHHH-----HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 8899999999987754332 33444444 577777777779999998888884443
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-06 Score=85.71 Aligned_cols=352 Identities=17% Similarity=0.168 Sum_probs=207.7
Q ss_pred CChHHHHHhHHHHHHHHHHHhhh--HHHHhhh-hhcc---ccCC-CCchhhhhhHHHhhccHHHHHHHhcCCCHHHHHHH
Q 009700 20 VDADEARRRREDNLVEIRKNKRE--DSLLKKR-REGL---ILQS-QPVTEANASIEKKLESIPSMVQGVLSENSGLQLEA 92 (528)
Q Consensus 20 ~~~~~~r~~r~~~~~~lRk~~r~--~~~~~~R-~~~~---~~~~-~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a 92 (528)
.+..|-|+-=+.....||+.-|+ ....+|| ++.- .+-. .+.. ++.+ .-++++.|++...+.-+
T Consensus 21 kT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypah---------FGqi-eclKLias~~f~dKRiG 90 (866)
T KOG1062|consen 21 KTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAH---------FGQI-ECLKLIASDNFLDKRIG 90 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCcc---------chhh-HHHHHhcCCCchHHHHH
Confidence 44455555555667788988887 4444443 3210 0000 0110 1222 33456667665444444
Q ss_pred HHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCH
Q 009700 93 TTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172 (528)
Q Consensus 93 ~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~ 172 (528)
--+..-++.. ....-.+ +...|.+=|++++ .-+.-.|+.+|+++++ ++....+ .|-+-++|++.++
T Consensus 91 YLaamLlLdE--~qdvllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~~ 156 (866)
T KOG1062|consen 91 YLAAMLLLDE--RQDLLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRDP 156 (866)
T ss_pred HHHHHHHhcc--chHHHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCCH
Confidence 3333333332 2222222 2455666677777 7888999999999987 5555543 4888889999999
Q ss_pred HHHHHHHHHHHHhhCCChhHHH--------HHHh--cCC----hHHHHHhhccchh-----hHHHHHHHHHhhhhcCCC-
Q 009700 173 DVREQAVWALGNVAGDSPSCRD--------LVLS--HGA----LMPLLAQLNEHSK-----LSMLRNATWTLSNFCRGK- 232 (528)
Q Consensus 173 ~i~~~a~~~L~nl~~~~~~~~~--------~~~~--~g~----i~~Ll~ll~~~~~-----~~~~~~a~~~L~~l~~~~- 232 (528)
.+|..|+.|...+....|+.-+ .+.+ +|+ +..+..++..+++ .++.......|.++....
T Consensus 157 ~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y 236 (866)
T KOG1062|consen 157 YIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY 236 (866)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999877665433 3332 333 4444555533221 235667777888888776
Q ss_pred -CCCChhhh-HHHHH----HHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH--HHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 233 -PPAPFDQV-RPALA----ALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA--VIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 233 -~~~~~~~~-~~~l~----~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
|......+ .+.++ .++++|..+|.+......-.|..++.+.+..... .+-...+..++.+ .++..++..|
T Consensus 237 speydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~Lrvla 314 (866)
T KOG1062|consen 237 SPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLA 314 (866)
T ss_pred CCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHH
Confidence 22222222 33333 3556777888888888888888887754422111 1111122222222 1345566667
Q ss_pred HHHHhHhhcCCcchhHHHhc----------cC----ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 009700 305 LRTVGNIVTGDDTQTQCVID----------NQ----GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI 370 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~----------~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 370 (528)
+.+||.+..+.+...+++-- .. -=..+++.|+++ |..+|+.|+..+..|.- ...+.. +
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn--~~Nv~~-----m 386 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVN--ESNVRV-----M 386 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhc--cccHHH-----H
Confidence 77777666655544333210 11 123477888888 99999999988888863 333433 3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH
Q 009700 371 IAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405 (528)
Q Consensus 371 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 405 (528)
+..|+..|.+.+.+.+...+.-+..++..-.|+..
T Consensus 387 v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 387 VKELLEFLESSDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch
Confidence 55688888888999999999988888876555443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-07 Score=86.53 Aligned_cols=273 Identities=18% Similarity=0.152 Sum_probs=186.2
Q ss_pred hhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 009700 107 PIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGN 184 (528)
Q Consensus 107 ~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~n 184 (528)
-++.+...|.+..|+.++..++ ...++.+|.+.|-.+.. .++++.+...| +..++.+-+. ..++.....+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 3556667889999999999887 34579999999999987 78888888877 5555555444 668899999999999
Q ss_pred hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC--CCChhhhHHHHHHHHHHhcCCCHHHHHHH
Q 009700 185 VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PAPFDQVRPALAALQHLIFSSDEEVLTDA 262 (528)
Q Consensus 185 l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a 262 (528)
+..++.+....++..|++..++-.. ...++.+.++|..+|.|++-+.. .........+-..|..+-.+.|+-.+.+|
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 9999988888899999999998888 66679999999999999987752 22223334555567777667788889999
Q ss_pred HHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchh
Q 009700 263 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 263 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 342 (528)
|.+++.++.... .-..+-.+|.+..+-.++.+.++.-. +....... .--....++.|+.+|.+. .-+
T Consensus 328 ClAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~a-QG~~~d~LqRLvPlLdS~-R~E 394 (832)
T KOG3678|consen 328 CLAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYA-QGRGPDDLQRLVPLLDSN-RLE 394 (832)
T ss_pred HHHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhh-ccCChHHHHHhhhhhhcc-hhh
Confidence 999999987653 33445555655555555555443211 11111111 011123577899999876 555
Q ss_pred HHHHHHHHHHHHhc-CC-HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 343 IKKEACWTISNITA-GS-RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 343 v~~~a~~~L~nl~~-~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
.+..+++-++.=++ .+ ....+.+.+-|.|..|-++.++++.--.+.|..+|.-+
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 55444444433322 11 11223344678999999999888755555555555544
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-06 Score=86.72 Aligned_cols=341 Identities=18% Similarity=0.198 Sum_probs=221.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.+++.....|-+.+...-..+.+.+... |... .+.++.++.=..+++ +.++..|++.++.+.- +....
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e 120 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE 120 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH
Confidence 4688888888888777777666677666552 2221 345777777777777 8999999888777655 22222
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +...+...+.+.++.+|..++.+..++-..++ +.+.+.|.+..|-.++ .+.++.+..+|+.+|..+....
T Consensus 121 y-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 Y-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred H-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhC
Confidence 2 45788999999999999999999999876654 4677889999999999 6889999999999999999876
Q ss_pred CC-CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 233 PP-APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 233 ~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+. .........+..++..+..-++--+...+.++.+-...++...+ .++.++...|.+.+..+...+...+...
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 53 33333455555555555444444445555555544433332222 2677788888888888888888887777
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ-------------------------AVI 366 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l~ 366 (528)
..........+. ..+-+.++.++++. . .++..|+.-+.-+....+.... .+.
T Consensus 267 ~~~~~~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la 343 (734)
T KOG1061|consen 267 VKYLKQVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA 343 (734)
T ss_pred HHHHHHHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence 754444222222 23445555555554 3 4444433333333222222100 001
Q ss_pred H-cC---cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 367 E-AN---IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 367 ~-~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
. .+ +++-|...-..-|.+...++.+|+++++..... .++++..|+++++.+-..++..++..+..++++
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 0 11 223333333344788889999999999884321 267899999999977777777778888888888
Q ss_pred hhhc
Q 009700 443 GEAD 446 (528)
Q Consensus 443 ~~~~ 446 (528)
.++.
T Consensus 417 yP~~ 420 (734)
T KOG1061|consen 417 YPNK 420 (734)
T ss_pred CCCc
Confidence 7654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-06 Score=83.42 Aligned_cols=334 Identities=12% Similarity=0.087 Sum_probs=207.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+...+..|++.. +.++.+|+..++.++.--. ..-+.+...| -.|...|...++++.-..+.++..|+....-.+.
T Consensus 801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 344456677777 8999999999888876211 1112233334 3466788888999988888877777632210000
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.--..+++|.|...| ++....++.++...+..+|...|.... .....+-=-|+.+|.+.+.+++..+..++++++..-
T Consensus 878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 111235788899999 888999999999999999988754221 111233334667788889999999999999998653
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
.. .+++..|+.-|+..+...+....-+++-.+..+.. ..++|.|+.=...+ ...|+.-.+.+++-
T Consensus 957 GP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 957 GP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred CH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence 21 12455566666555444444433344433332221 12455555555555 77788888888877
Q ss_pred HhcCCHH-HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-------CCC
Q 009700 354 ITAGSRS-QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-------CPD 425 (528)
Q Consensus 354 l~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-------~~~ 425 (528)
+...-.+ ..+++ ..+.|.|-+.|.+.|.--|..|+.++.+++.+.. -.|..+.++.+|+ ...
T Consensus 1022 ~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred HHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCC
Confidence 7642111 22222 2378899999999999999999999999998642 2234444444443 356
Q ss_pred hHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCc
Q 009700 426 PRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 426 ~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
|.++....+++..+-..-... .+. .-+.+=.-|+...|++..-.+.+.++-...
T Consensus 1092 Phviqa~~e~~eg~r~~Lg~~---------~~~---------~Y~~QGLFHParkVR~~yw~vyn~my~~~~ 1145 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGPQ---------AML---------KYCLQGLFHPARKVRKRYWTVYNSMYHGSQ 1145 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhchH---------HHH---------HHHHHhccCcHHHHHHHHHHHHHhHhhccc
Confidence 677766666666555432110 111 122222467778888877777776665443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-06 Score=87.11 Aligned_cols=353 Identities=13% Similarity=0.119 Sum_probs=217.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.+++.+.+.|.+.|++|+..|.+-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 6788899999999999998887666543 222222223567899999999988 999999999999999743333211
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh----ccch-hhHHHHHHHHHhhhhcC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL----NEHS-KLSMLRNATWTLSNFCR 230 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll----~~~~-~~~~~~~a~~~L~~l~~ 230 (528)
..+..|+.-+-++....|..+.-.|-.....-+..........+.+.++..+ .... ...++..++..+.-+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1344455444344444555444444433333222222222233334444333 2222 23355555555554433
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHh
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVG 309 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~ 309 (528)
.....-......++..++.-+.++-..|+..++.+|+.++...+.. ... ++++.+.+-|.. .+......-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYV-ELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHH-HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3222222245667777888888888999999999999998754421 111 356667766655 44555566677788
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHh---cccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc------
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLL---TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH------ 380 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 380 (528)
.++.........- -..+++.+.+.. ... +.++|+.+..++..+...+|..+-..+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 8876544432211 125677788877 555 8899999999999988777766644432 244444444421
Q ss_pred --------------------------C--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHH
Q 009700 381 --------------------------A--EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432 (528)
Q Consensus 381 --------------------------~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~ 432 (528)
. .+.||++|+.++..++.. ..+....+. +.+-+.++.-++.....+...+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~-q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFY-QTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHH-HHhCHHHHHHHHHHhhhHHHHH
Confidence 0 256999999999988874 234444333 3455677777777777777777
Q ss_pred HHHHHHHHHhh
Q 009700 433 LEGLENILKIG 443 (528)
Q Consensus 433 l~~l~~i~~~~ 443 (528)
..++..++..-
T Consensus 394 f~~yi~ll~qt 404 (1233)
T KOG1824|consen 394 FHAYIALLKQT 404 (1233)
T ss_pred HHHHHHHHHcC
Confidence 77777777643
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=85.35 Aligned_cols=320 Identities=17% Similarity=0.082 Sum_probs=199.1
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
.-.+++|..+.++.+++ ..+++.|+..+.|++..-... .......+...+.++....+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34678999999999988 899999999999998721111 1111123445566665555554443 44444444322111
Q ss_pred HHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009700 192 CRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSY 268 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 268 (528)
-++. .--++.++.+|. ...++..+...+.-|..|-..++..-......+++.|..+|..+.++|+.-+=.+++.
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1110 112444444442 4456777777776666665443333334457889999999999999988665555554
Q ss_pred hcc---CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHH
Q 009700 269 LSD---GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIK 344 (528)
Q Consensus 269 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~ 344 (528)
+.. .++... --...++.++..+.++++.++..|+.-+-.++.-.+... ...-+|++..+++.+.+. .. .++
T Consensus 235 fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~ 309 (675)
T KOG0212|consen 235 FLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIK 309 (675)
T ss_pred HHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHH
Confidence 432 122111 112478888999999999999999888888776555433 344568888888888877 44 344
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHH-cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 009700 345 KEACWTISNITA--GSRSQIQAVIE-ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL 421 (528)
Q Consensus 345 ~~a~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll 421 (528)
..+...-+.+.. +.+...+. ++ -.++..|...+.+...+.|..+..-+..+-...+.+... ....+...|..-|
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tL 386 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhh
Confidence 444333222222 11111111 33 236788888888998999999987777776644322221 1345777888888
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhh
Q 009700 422 VCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 422 ~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.+.+.+++..++..+.+++...+.
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCccc
Confidence 888999999999999999876544
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-06 Score=87.60 Aligned_cols=342 Identities=18% Similarity=0.155 Sum_probs=215.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.++..+++...+.++.++..|++.+..+- . ..-... +...|...+++.+ +-++..++.++.++-..+ .
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~-v--~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR-V--DKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe-e--hHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence 45666666677788888877766554221 1 111222 3677888888888 999999999999987744 3
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+.+...|.++.|..++.++++.+...|+.+|..|....+..-...+....+..++..+ +.-.-..-+.+|-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence 4567789999999999999999999999999999866653111111111233333333 222233334455555555
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.|... .-...++..+...|.+.+..+...+...+.++...-......+. ..+-+.++.++.... .+..-|++-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 44433 33456667777777888888777777777777655443222222 346677777777766 6666666666655
Q ss_pred hcCCcchhHHH--------------------------hccCChHHHHHHhccc--CchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 312 VTGDDTQTQCV--------------------------IDNQGLPRLYQLLTQN--YKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 312 ~~~~~~~~~~~--------------------------~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
....+.....- -+.++-+.+-++.... .+...-+.+.+++++++..-++.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--
Confidence 54433211000 0112222222222221 16778889999999997643322
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHh
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~ 442 (528)
++++..|++++..+..-+..+++..+..+....+... + .++..++..+++ .+|+.+....|.+......
T Consensus 385 ----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 385 ----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-E-----SVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred ----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-h-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 6789999999998877788889999999887653221 2 245566666665 6788887777777776655
Q ss_pred hh
Q 009700 443 GE 444 (528)
Q Consensus 443 ~~ 444 (528)
.+
T Consensus 455 i~ 456 (734)
T KOG1061|consen 455 IE 456 (734)
T ss_pred cC
Confidence 44
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-06 Score=80.41 Aligned_cols=338 Identities=14% Similarity=0.114 Sum_probs=210.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASG--TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
++...+.+|.+.. +.++..|+...+.++.- .....+.+...| ..|...|...++++.-..+.+++.|..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4556677888887 89999999888777651 111233344444 345667777889998888888887764321 11
Q ss_pred H-HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh-hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 194 D-LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD-QVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 194 ~-~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
. .--..|++|.|...| .+....+..+....+..+|...|...-. ....+-=-|+.+|.+.+.+++..|..++++++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 112356889999999 7888899999999999999887543221 112333346778888999999999999999986
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
.-... +++..|+.-|+..+...+....-+++-.+..+.. ..++|.|+.=...+ +..|+.-.+.++
T Consensus 760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 53211 2555666666665555454444444444432221 13455555544555 667777777777
Q ss_pred HHHhcCC-HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-HHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 352 SNITAGS-RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-QIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 352 ~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
+-+.... ....+++ ..+.|.|-+.|.+.|+--|..|...+.+++.++.-- ....+++ ++..|..-+-.+.|.++
T Consensus 825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 7665421 1222222 237788889999999999999999999998875311 1111111 22233333334677777
Q ss_pred HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 430 TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
....+++..+...-.. .++. .-+.+=.-|++..|++..-...+..|-.
T Consensus 901 ~~~~Eg~e~~~~~lg~---------g~~m---------~Yv~qGLFHPs~~VRk~ywtvyn~myv~ 948 (975)
T COG5181 901 QSFDEGMESFATVLGS---------GAMM---------KYVQQGLFHPSSTVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHHHHHhcc---------HHHH---------HHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence 7777777766654321 1122 2233345788888888776666665543
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00012 Score=67.09 Aligned_cols=342 Identities=14% Similarity=0.160 Sum_probs=228.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCC---chhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERC---PPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
.+.|-..|..++..++.-++..+..++...+. ..+..++..+++|.++.++...+ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 45566677778888888999888888776421 12556678999999999999888 8999999999999998 7777
Q ss_pred HHHHHhcCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFV--QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~--~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
...+.++..+..+- .+-..-+.-.|..+...+..+.+-+|.....+...|.+..|..-+....|.-++.++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888777665443 2323345667888888999999999988888899999998888885557888889999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChH---HHHHHHHh--CcHHHHHHHhcCCChhhH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLLHSSTTVL 301 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~---~~~~~~~~--~~l~~L~~lL~~~~~~v~ 301 (528)
........+....++++.+...+.-. ++--.-.++...+.+.....- .-+.+++. -.++...+++...++..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 87765556666688888888888643 443333344444444322110 00112221 134555666777889999
Q ss_pred HHHHHHHhHhhcCCcchhHHHhccCC--hHH-HHHHhcccCchhHHHHHHHHHHHHhcC---CHHHH---------HH-H
Q 009700 302 VPALRTVGNIVTGDDTQTQCVIDNQG--LPR-LYQLLTQNYKKSIKKEACWTISNITAG---SRSQI---------QA-V 365 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~~~~~~~~~~--l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~---------~~-l 365 (528)
..|+.++|.+.+.... .+.+...|- ... +......+ ...-+..+..+|.+++.. .++++ .. +
T Consensus 322 eaAiDalGilGSnteG-adlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 322 EAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 9999999998875543 333444332 222 23333333 344566777888888752 22221 11 1
Q ss_pred HH-------cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 009700 366 IE-------ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420 (528)
Q Consensus 366 ~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 420 (528)
++ ..-...+..+++.+.++++..+..++..++.. +-.+...+...+++....+.
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeeccc
Confidence 11 13455667778888999999999999988873 22223333355666555443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-06 Score=82.33 Aligned_cols=266 Identities=14% Similarity=0.110 Sum_probs=177.0
Q ss_pred ccHHHHHHHhcCCCHH--HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 72 ESIPSMVQGVLSENSG--LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
+.+..|++++.+++.+ ++.+|.+.|..++.. .+.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 4688999999988765 599999999999875 4666777666 555555555555589999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
....++..|++..++-.....++.+..+|+.+|+|++-.. ...+..+++..+-+-|..+- .+.|+-++.++|.++..+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999998888889999999999999998543 44566666666555555554 666888899999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
+..+.......-++.+..+-.++.+-|+.-... --...+.+. ..+-+++|+.+|.+...+.+.-+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 987643333333444444444555444432111 000111111 113578899999865544443333222
Q ss_pred hHhhc--CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH
Q 009700 309 GNIVT--GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 309 ~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 354 (528)
..=+. .-....+.+.+-|.++.|..+.+++ +..--+.|-.+|.-|
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 22221 1122344556678899999988876 544444444444443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-05 Score=76.93 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=179.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
+-+-++.+|+++. +-++..|+.++..+...-|+..+ ..+|.|..-|..+++.++..|+..++.+|..+|...
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4456677888887 88999999999888874444332 367999999999999999999999999998887531
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC-HHHHHHHHHHHH--hhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD-EEVLTDACWALS--YLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~--~l~~~ 272 (528)
+. .-|.+..+|-.+.+.-+.-..+..+.+|+.-.| .....+++.|..++++.. ..+...+..++. +++.+
T Consensus 217 -L~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 -LQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -cc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 11 456677777666666677777777777775543 234577888888887664 455566665553 33333
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.++... .+.. +++.|-.++.+.++.++.-++-+++.++...+...+.. -+.++..|.+. +..+|-.|+..+.
T Consensus 290 ~~d~~a-siqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 222211 1121 67788888999999999999999999998777655433 34788999998 9999999999998
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCC
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~ 401 (528)
-+.. .+.+.. ++..|+..+... ....|.+.+.-+..++...+
T Consensus 362 gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 362 GMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 8864 333433 344555544433 34777777777777766543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-06 Score=89.24 Aligned_cols=245 Identities=17% Similarity=0.206 Sum_probs=189.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+|.+++-|-| .--++.|+..|.+++... ...+.....-|++|..+++|+++. .+++.--+.+.+.|..-++.+...
T Consensus 474 LPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHH
Confidence 4444544443 234677888888888764 667777788999999999999998 899999999999999988888888
Q ss_pred HHhcCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 154 VIEHGAVPKFVQLLGS-A--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~-~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+++.++-.++++.|.. + +++-|..|+.+|+.|+.+.+-.++.+++.+.+...+..|..++.+-++.-+|-+|..|-.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 9988888888888876 2 368999999999999988888888899999999888888554567788889999999988
Q ss_pred CCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC----ChHHHHHH------------HHhCcH---HHHH
Q 009700 231 GKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PRLV 290 (528)
Q Consensus 231 ~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~~L~ 290 (528)
+.+.....- ...+...|..+|..+-++|+..|..+|+.+..+ .++....+ ++.-+. -.++
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 875555433 367788899999999999999999999988765 22222221 121111 2566
Q ss_pred HHhcCCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 291 ELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 291 ~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
.+++...+-++....-+|+.++.+...+...+
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 77788888888888888888887776655433
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-05 Score=77.26 Aligned_cols=300 Identities=19% Similarity=0.173 Sum_probs=182.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.|..+-+.|+.+++.+|--|++.+..+ +-+.+.-+ ++-.+-++..+.. +-++..|+.++..+-+-+++...
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI----RVPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence 467777788888888887776666533 12222111 1233345555666 89999999999999987887776
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+. ..+-.+|.+.++-+.-.|+.++-.+|-+.-+ .+ ++-...+.++| .+-++--+..+..+|...|+..
T Consensus 180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerld---LI--HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLD---LI--HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHH---Hh--hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence 543 5566788888899999999999998855322 22 23456677777 4444444555555665555554
Q ss_pred -CCCC----------------------------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh
Q 009700 233 -PPAP----------------------------FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA 283 (528)
Q Consensus 233 -~~~~----------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 283 (528)
+.+. ..-..-++...-.+|.+.++.+...++.+++.++.... ..
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~----- 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT----- 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----
Confidence 2220 01113345556678889999999999999999986432 12
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHH-------------------------hccC----ChHHHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV-------------------------IDNQ----GLPRLYQL 334 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~-------------------------~~~~----~l~~L~~l 334 (528)
.++..|+.+|.++. .++.-.+..+..++...+.....- .+.+ +++-+...
T Consensus 322 ~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y 400 (968)
T KOG1060|consen 322 KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY 400 (968)
T ss_pred HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 35677888877643 356666666666654333211110 0111 12223333
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
+++. +..+...+..+|+.++...... ...++..|+.++++.+..|..++...|..+....+.++.+
T Consensus 401 I~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ 466 (968)
T KOG1060|consen 401 IKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE 466 (968)
T ss_pred HhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH
Confidence 3444 4456666666677665432221 2235666777777777777777777777777765444433
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.6e-07 Score=86.90 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=192.1
Q ss_pred HHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHH
Q 009700 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEE 257 (528)
Q Consensus 179 ~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~ 257 (528)
+.+|-.++..-...|.-+.+..+.++|++.| +.++.-+.-.++..++|+.-..+.. ......+++..|++++.+.|..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3344445455556777788888999999999 6666666666777777777655333 3344478999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc---hhHHHhcc----CChH
Q 009700 258 VLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT---QTQCVIDN----QGLP 329 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----~~l~ 329 (528)
++....|.+..+..+.++..+ .++..-.+..++.+..++.+.++..++.++.|+...+.. ..+..+.. -+..
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999876554322 234445679999999999999999999999999874322 22222221 2456
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccC-----------ChHHHHHHHHHHHHhc
Q 009700 330 RLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHA-----------EFEVKKEASWAISNAT 397 (528)
Q Consensus 330 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~nl~ 397 (528)
.+++.+... +|-...+.|+.|.++++.+....+.+. ...++..+..+|... ...+-.-......++.
T Consensus 569 ~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 569 RLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 677777777 777777889999999886555554444 344555554444321 1111111122222222
Q ss_pred CCCCHHHHHHHHHCCCh--HHHHhhcC---CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHH
Q 009700 398 SGGTREQIQFLVSQGCI--KPLCDLLV---CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIEN 472 (528)
Q Consensus 398 ~~~~~~~~~~l~~~~~l--~~L~~ll~---~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 472 (528)
.+.+ .. +.+.. +.+-.+=+ .++.++.....|.+.++.......... + ....-+..+.+.|.-+-+..
T Consensus 648 e~~d--~f----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt-r-atveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 648 ENSD--KF----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT-R-ATVERIQILCANGIREWLVK 719 (743)
T ss_pred cccc--cc----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc-h-hhHHHHHHHHHccHHHHHHH
Confidence 2111 00 11111 22222211 123345555666666644432221100 0 12235788889999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHh
Q 009700 473 LQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 473 L~~~~~~~v~~~a~~ii~~~ 492 (528)
+|.++++.|++++..++..+
T Consensus 720 ~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 720 IQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HhccCcHHHHHHHHHHHHhh
Confidence 99999999999999988753
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-05 Score=77.11 Aligned_cols=347 Identities=17% Similarity=0.158 Sum_probs=220.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..+++.+....+.+|.....++..+........... +.+.+.++++... ..-+..+++.+..+..+. ....
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~~ 169 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIES 169 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHhh
Confidence 5666777777788888888777776655432223222 4777888888777 788888999998888754 3345
Q ss_pred HHhcCChHHHHHhhCCCCHH-HHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 154 VIEHGAVPKFVQLLGSASDD-VREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~-i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+.+.+++..+...+.+.... -++.+..+.-..+.. ++..-..+.. .++.++... .+..+.++..+..+...+.+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHh
Confidence 56678888888888874433 333233333222211 1111111121 345555555 556778888887777666544
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
-+. ..+...+|.++.-+....+.....++..++.++...+..... .-..++|.+.+.|.+..+.++..+..++-.+
T Consensus 247 ~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 247 LSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred cCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 321 223445555555444446777888889999888877755544 3446999999999999999999999999988
Q ss_pred hcCCcc-hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 312 VTGDDT-QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
+..-+. .++ .+++.|++.+.++ ...+. ++...|+.-+- -+.+..---+=++|.|.+-+...+..+++.++
T Consensus 323 ~svidN~dI~-----~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttF--V~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 323 GSVIDNPDIQ-----KIIPTLLDALADP-SCYTP-ECLDSLGATTF--VAEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred HHhhccHHHH-----HHHHHHHHHhcCc-ccchH-HHHHhhcceee--eeeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 864332 121 3567788888776 42222 23333332110 00000000012567777778888889999999
Q ss_pred HHHHHhcCCC-CHH-HHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 391 WAISNATSGG-TRE-QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 391 ~aL~nl~~~~-~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
.++.|++.-- ++. ...++-+ +++.|-..+....|+++..+..+|..+.+.....
T Consensus 394 ~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 394 IIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 9999998744 333 3344444 6777777777789999999999998888755443
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.4e-05 Score=75.97 Aligned_cols=380 Identities=14% Similarity=0.065 Sum_probs=225.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCch--hHHHHhcCcHHHHHHhhcCCC------ChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP--IEEVIRAGVVPRFVEFLDRHD------LPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l~ 144 (528)
.+.+.+.+|++.+.+.++.|+..+.+++....... .+.+.+.=+.+.|-++|.+.. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 57888999999888889999999999998642111 334667666788888888732 2467888899999998
Q ss_pred cCChhhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHH
Q 009700 145 SGTSEHTRVVIEHGAVPKFVQLLGSASD-DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATW 223 (528)
Q Consensus 145 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~ 223 (528)
. .++....---.+-||.|+..+...+. .+...|+.+|..++ ..+.-++.+.+.|.++.|...+.+ .+.....++.
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~ 161 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALN 161 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence 8 44443211112579999999988666 99999999999999 555578888999999999999844 4555677777
Q ss_pred HhhhhcCCCCCC----ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHH-HHHHHHh----CcHHHHHHHhc
Q 009700 224 TLSNFCRGKPPA----PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDK-IQAVIEA----GVCPRLVELLL 294 (528)
Q Consensus 224 ~L~~l~~~~~~~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~----~~l~~L~~lL~ 294 (528)
++.+++...... .......+++.+...+........-..|..|..+....+.. ....... .+...+..+|+
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 777776654211 12223456667777777666667777888888876654211 0111111 24445556665
Q ss_pred C-CChhhHHHHHHHHhHhhcCCcchhHHHhcc-----CChHHHHHH---------------hcccCch----------hH
Q 009700 295 H-SSTTVLVPALRTVGNIVTGDDTQTQCVIDN-----QGLPRLYQL---------------LTQNYKK----------SI 343 (528)
Q Consensus 295 ~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~l---------------L~~~~~~----------~v 343 (528)
+ ..+.-|.+++...+.+.......- .+.+. .++-.++++ ...+... .+
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~~G~~w-l~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i 320 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDLLGPEW-LFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI 320 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhChHh-hcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence 5 456677778777777764321100 01111 122222221 1111000 11
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHH--cCcHHHHHHHHccC------ChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009700 344 KKEACWTISNITA-----GSRSQIQAVIE--ANIIAPLVYLLQHA------EFEVKKEASWAISNATSGGTREQIQFLVS 410 (528)
Q Consensus 344 ~~~a~~~L~nl~~-----~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 410 (528)
-....+.+.+-.. -.++....+.. .+.+...+++|.+. ++..-..+..+|+....-.+....+.+
T Consensus 321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-- 398 (543)
T PF05536_consen 321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-- 398 (543)
T ss_pred HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence 1122222222111 13344444432 34555555666432 333556678888877765444434443
Q ss_pred CCChHHHHhhcCCCCh----------HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHH
Q 009700 411 QGCIKPLCDLLVCPDP----------RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIE 471 (528)
Q Consensus 411 ~~~l~~L~~ll~~~~~----------~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 471 (528)
.++++.|+.+.+.... +.+.-.+=+|..+..... ....+..+||...+-
T Consensus 399 ~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~------------gr~~l~~~~g~~~l~ 457 (543)
T PF05536_consen 399 YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE------------GRKILLSNGGWKLLC 457 (543)
T ss_pred HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH------------HHHHHHhCCcHHHHH
Confidence 3688888888865322 345555556665554221 355555677765554
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-05 Score=78.50 Aligned_cols=366 Identities=15% Similarity=0.160 Sum_probs=212.3
Q ss_pred HHHHHHhhcC-CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 117 VPRFVEFLDR-HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 117 i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.|.|.+.+.. .+...++.+++..++.+.+.-....-. ...+++..++.-|.++...+|..++.+|+.++...+. +.
T Consensus 133 t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~l 209 (1233)
T KOG1824|consen 133 TPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DL 209 (1233)
T ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HH
Confidence 3444444432 222347777777777665521111111 1234555666667778889999999999999976553 22
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHh---cCCCHHHHHHHHHHHHhhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLI---FSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~l~~l~~~ 272 (528)
. .+.+..+++-|.+.......+....+|..+|+.....--.....++|.+.... +.+|+++++.++.++..+...
T Consensus 210 y--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 210 Y--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred H--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 2 23677788888666777778888888998888753333344567888888888 677899999999999887766
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCC----------------------------------ChhhHHHHHHHHhHhhcCCcch
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHS----------------------------------STTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~----------------------------------~~~v~~~al~~L~~l~~~~~~~ 318 (528)
.+..+-..... ++..+++.+.++ +|.+|+.|+.|+..+.....+.
T Consensus 288 cp~ei~p~~pe-i~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~ 366 (1233)
T KOG1824|consen 288 CPKEILPHVPE-IINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM 366 (1233)
T ss_pred ChhhhcccchH-HHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH
Confidence 65444433332 444445444321 2578999999998887543322
Q ss_pred hHHH------------------hccCChHHHHHHhcccC-----------------------------------------
Q 009700 319 TQCV------------------IDNQGLPRLYQLLTQNY----------------------------------------- 339 (528)
Q Consensus 319 ~~~~------------------~~~~~l~~L~~lL~~~~----------------------------------------- 339 (528)
...+ +...++..++.+|.+..
T Consensus 367 L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ 446 (1233)
T KOG1824|consen 367 LPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE 446 (1233)
T ss_pred HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh
Confidence 1111 11223444444443210
Q ss_pred -chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH
Q 009700 340 -KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416 (528)
Q Consensus 340 -~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~ 416 (528)
+.+.+..+...|..+....|.....-+ ..++|.++..+.+. ....+..++..+.+....++++...-+. ..+.++
T Consensus 447 ks~kt~~~cf~lL~eli~~lp~~l~~~~-~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~Ls~~ 524 (1233)
T KOG1824|consen 447 KSVKTRQGCFLLLTELINVLPGALAQHI-PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SALSPP 524 (1233)
T ss_pred ccccchhhHHHHHHHHHHhCcchhhhcc-cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hhhhhH
Confidence 011111111122222111111110000 12455555555444 3577888888888887776665544322 235566
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhcC
Q 009700 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 417 L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~~ 494 (528)
+......+-+++...++-....+++.-.........+.++|...+- --.++.|. ...|.+|+++|...+..+..
T Consensus 525 v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~----~~tl~rL~a~d~DqeVkeraIscmgq~i~ 599 (1233)
T KOG1824|consen 525 VVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY----DCTLQRLKATDSDQEVKERAISCMGQIIA 599 (1233)
T ss_pred HHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH----HHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777554433211223455554442 23445554 67889999999887776544
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-05 Score=77.20 Aligned_cols=241 Identities=17% Similarity=0.063 Sum_probs=165.0
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 73 SIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 73 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.++.++..+. .+++.+...++..+. ... .+. .+..|+..|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566777774 455666655554443 111 111 2788889998877 7899999998886544
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+..+.|+.+|.+.++.++..++.+++..-. ...+.+...| ++.+..++..++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2356788889988899999888877776321 1346777888 688899999999999988754
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
..++.|...+.+.++.|+..+++++..+.. +. .+..+..............+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 345667777888999999999999977643 21 233444433444433433333344333
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
+.+ ..++.|..+++++ .++..++++++.+-. + ..++.|+..+.... ++..|..
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--V---------EAAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c---------chHHHHHHHhcCcH--HHHHHHH
Confidence 111 4567888888865 389999999997742 2 36788888776553 9999999
Q ss_pred HHHHhcC
Q 009700 392 AISNATS 398 (528)
Q Consensus 392 aL~nl~~ 398 (528)
++..|+-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999876
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=84.93 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=191.3
Q ss_pred HHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009700 110 EVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 110 ~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~ 189 (528)
.+.+..+...|+++|+.++ ..+..-+...++|..-..+.-+..+++.|++..|++++.+.+..++....|.+..+..++
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3345678899999999887 677888888999988877778888999999999999999989999999999999998665
Q ss_pred hhH-HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC--CChhhh------HHHHHHHHHHhcCCCHHHHH
Q 009700 190 PSC-RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP--APFDQV------RPALAALQHLIFSSDEEVLT 260 (528)
Q Consensus 190 ~~~-~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~l~~L~~ll~~~d~~v~~ 260 (528)
.+. +-..+..-++..++.+. +++...++..++..|.|+..+... ...... .-....|+..+...++-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 432 33445555688899998 888999999999999999875422 111111 33566777888877777777
Q ss_pred HHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC-----------CChhhHHHHHHHHhHhhcCCcchhHHHhccCCh
Q 009700 261 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH-----------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328 (528)
Q Consensus 261 ~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~-----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 328 (528)
..|..|.+++..+++....+... .++..+..+|.. ....+..+......++....+.....+.-..-+
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~ 663 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL 663 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence 77889988887666554444433 344444443321 112333344444444444333222111100001
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 329 PRLYQLLTQNYKKSIKKEACWTISNITA---G------SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 329 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
+.. +--....+.++-.+..|.+.|+.- + +.+.++.+.+.|+-+.|.......++.||+.+-.||.++-
T Consensus 664 D~~-~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 664 DNM-KKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred ccc-ccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 100 000111134567778888888652 2 2366777888888888887777788899999999998863
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00016 Score=73.55 Aligned_cols=171 Identities=14% Similarity=0.193 Sum_probs=100.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..|..+|.|+....+..|+.-+..+...+.+ . +..+|..|+...+.+ .+++...---|...+...++-. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 4677778888777888888777666655322 2 234777788887777 7888877777777777444321 1
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
. -|..+-+-|.++++.+|..|+++|..|=. +..... ++-++-++. .++.+-++..|+.++-.|-.-.+.
T Consensus 108 L---SIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI-----~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 L---SINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPI-----MLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred e---eHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHH-----HHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChh
Confidence 1 35677778888888888888888777621 100000 011111222 455666777777777766554432
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.. ..++..+-.+|.+.++-|.-.|+.++-.+|
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 21 133444444555555555555555555444
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-05 Score=80.40 Aligned_cols=379 Identities=15% Similarity=0.150 Sum_probs=236.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++....+...++..|...+..+......+. . ....+.+.+++...+.+ ..++.........+...-. ..
T Consensus 278 ~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d-~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~~---~~ 350 (759)
T KOG0211|consen 278 LPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--D-VVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAVG---PS 350 (759)
T ss_pred cHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--h-hhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHhc---cc
Confidence 4555555555555677777777666665542221 1 12334677777777666 5666555554444443100 01
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
......++....++.....+.+..++.-...++.. +..++..+....+++.+-.+. .+.+..++...+.....+..-.
T Consensus 351 ~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~ 429 (759)
T KOG0211|consen 351 ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPIL 429 (759)
T ss_pred cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccC
Confidence 11123456666667666666666665555555422 111222333344455555555 6667777776666666555432
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+ ....+...+|.+...++..++.|+.+..+.+..+-...+..-...+....++.+..+-....+.++...++.+..++
T Consensus 430 ~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 430 P--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred C--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 2 22334667888888899999999999998776654433322222333457888888888888999999999988888
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA--GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
.... ..+++...-+.+...+.+. ...+++.|+..+.-++. |....+ ...+|.++.+...++...|...+
T Consensus 508 ~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 508 LQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred Hhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHH
Confidence 6443 1344444555666667666 77899999988888875 322222 34678888887777888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
.++..++...+.+. ....+++.+.++..+..+.++..++..|..+...-.... .+.-....+
T Consensus 579 ~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~--------------~~~~v~pll 640 (759)
T KOG0211|consen 579 FSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV--------------RDEEVLPLL 640 (759)
T ss_pred HHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH--------------HHHHHHHHH
Confidence 88887766443332 334578899999999999999999999998887653221 122234566
Q ss_pred HHHhcCCCHHHHHHHHHHH
Q 009700 471 ENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii 489 (528)
+.|-.+++.+++..|....
T Consensus 641 ~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 641 ETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHhccCcccchhHHHHHHH
Confidence 6666677777766555443
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-05 Score=70.00 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=163.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE--HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+..++.++.+.+ |.++..|+..+..++.+ .-+.+.. .-.++.+.+++....+ .+.|+.+|.|++.+.. .|+
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 445789999988 99999999999999885 2222222 2467888888877555 7889999999987754 677
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh-------HHHHHHHHHHhcCC-C-HHHHHHHHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV-------RPALAALQHLIFSS-D-EEVLTDACWA 265 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~l~~L~~ll~~~-d-~~v~~~a~~~ 265 (528)
.++.. .+..++..+ .++...+....|..|+|+++.......... .+.+.....+...+ + ..-..+....
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77665 666677777 566667888899999999988632221111 22333333333332 1 1234556667
Q ss_pred HHhhccCChHHHHHHHHhCc--HHHHHHHhcCCChhhHH-HHHHHHhHhhcCCcchhHHHhcc--CChHHHH--------
Q 009700 266 LSYLSDGTNDKIQAVIEAGV--CPRLVELLLHSSTTVLV-PALRTVGNIVTGDDTQTQCVIDN--QGLPRLY-------- 332 (528)
Q Consensus 266 l~~l~~~~~~~~~~~~~~~~--l~~L~~lL~~~~~~v~~-~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~-------- 332 (528)
+++++...... ..+..... .+.+..+ ...+..+|. ..+.+|-|+|-....+-. +++. ++++.|+
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 77777654422 23333321 2223333 334444544 467788887765443332 2221 2222222
Q ss_pred -------------HHhcc----cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHH
Q 009700 333 -------------QLLTQ----NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAIS 394 (528)
Q Consensus 333 -------------~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 394 (528)
++|.. .+++.+|+.-.-+|.-+|+ +...++.+...|+-|.+-.+-+.. +++++ .||.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 33321 1267899999999999987 566677787887777776655544 45555 4455555
Q ss_pred HhcC
Q 009700 395 NATS 398 (528)
Q Consensus 395 nl~~ 398 (528)
++..
T Consensus 311 q~Lv 314 (353)
T KOG2973|consen 311 QMLV 314 (353)
T ss_pred HHHH
Confidence 5444
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-05 Score=74.45 Aligned_cols=243 Identities=19% Similarity=0.039 Sum_probs=170.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.++.|+..|....++++...+++++..... +. ++..|+..|.+.++.++..++.+|+.+- .+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--GR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch-----
Confidence 578888888544437887777666643221 11 3788999999999999999999999762 11
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
...+.|+.++ ++.++.++..++.++..... ...+.+..+|++.++.++..++.+++.+...
T Consensus 117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 2467788888 77888898888877766221 2356788889999999999999999998753
Q ss_pred HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
..++.|...+.+.++.|+..|+.+++.+.. + ..+..+..+.... .......+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 256678888999999999999999976643 2 1233555544443 333444434444333
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHH
Q 009700 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEG 435 (528)
Q Consensus 356 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~ 435 (528)
+.+ ..++.|..++.++. ++..++++++.+-.. . .++.|+..+.. +.+...+-++
T Consensus 237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---~---------av~~L~~~l~d--~~~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV---E---------AAPWCLEAMRE--PPWARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc---c---------hHHHHHHHhcC--cHHHHHHHHH
Confidence 222 36777888887755 999999999976552 2 46667776654 3488888999
Q ss_pred HHHHHHh
Q 009700 436 LENILKI 442 (528)
Q Consensus 436 l~~i~~~ 442 (528)
+..|.-.
T Consensus 291 ~~~ItG~ 297 (410)
T TIGR02270 291 FSLITGM 297 (410)
T ss_pred HHHhhCC
Confidence 9888743
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00027 Score=74.03 Aligned_cols=303 Identities=13% Similarity=0.163 Sum_probs=198.6
Q ss_pred hhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 70 KLESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 70 ~~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
.++..+.+...+. ..++.++.-|+..+..+.+. .+....+...|.+..|+.+|.+. |..+..++.+|..+++ ++
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NG 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-Cc
Confidence 3455667777777 46788999999888876665 67888999999999999999765 6899999999999999 77
Q ss_pred hhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---hhHHHHHH-----------hcCChHHHHHhhccc-
Q 009700 149 EHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDS---PSCRDLVL-----------SHGALMPLLAQLNEH- 212 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~---~~~~~~~~-----------~~g~i~~Ll~ll~~~- 212 (528)
+......+.|++..+..++.. .++..|.+++..|+.+..+. |..+-.++ ..| -+..+..+...
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-PEAAVHMFESTS 1922 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-HHHHHHHHhccC
Confidence 777778888988888887654 77999999999999997653 22111111 111 12333333111
Q ss_pred hhhH------HHHHHHHHhhhhc------------------------------------------CCC---CCCChhhhH
Q 009700 213 SKLS------MLRNATWTLSNFC------------------------------------------RGK---PPAPFDQVR 241 (528)
Q Consensus 213 ~~~~------~~~~a~~~L~~l~------------------------------------------~~~---~~~~~~~~~ 241 (528)
.+++ .+......+..+. .++ -........
T Consensus 1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence 1111 1111111111111 110 001122334
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 242 PALAALQHLIFSSD--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 242 ~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
+++..+..++..++ .........++..|....+...+.+-..|.+|.++..+.+.+..+-..|++.|..++...- ..
T Consensus 2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~ 2081 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CC 2081 (2235)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HH
Confidence 55666666666443 3333334445555666666555666666999999999999888888999999999987443 33
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccC
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
+.+.....+..+++.+... +...--||.+|..+.. ...+.+...++.|++|.|+.+|...
T Consensus 2082 ~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2082 DAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 3455555566677777653 3444577888887765 4455566677899999999999765
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00019 Score=65.23 Aligned_cols=274 Identities=14% Similarity=0.137 Sum_probs=179.9
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 203 ~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
..++.++ .+.++.++..|+.-+..|+.. +...... ....++.+.+++...++ ...|..++.|++.... ....++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence 4567777 788899999999999998877 2222222 25567788888887766 6788999999997643 445555
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh------ccCChHHHHHHhcccCch-hHHHHHHHHHHHH
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI------DNQGLPRLYQLLTQNYKK-SIKKEACWTISNI 354 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~------~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 354 (528)
+. ++..++..+.++.+.+....+..++|++...+.....+. +.|++.....+..++.+. .--...+.+++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 55 888889999998888999999999999987665432221 256666666666655331 2224456677777
Q ss_pred hcCCHHHHHHHHHcCcHHH-HHHHHccCChHHHH-HHHHHHHHhcCCCCHHHHHHHHH--CCC-----------------
Q 009700 355 TAGSRSQIQAVIEANIIAP-LVYLLQHAEFEVKK-EASWAISNATSGGTREQIQFLVS--QGC----------------- 413 (528)
Q Consensus 355 ~~~~~~~~~~l~~~~~i~~-L~~ll~~~~~~v~~-~a~~aL~nl~~~~~~~~~~~l~~--~~~----------------- 413 (528)
+. .+..+..+.+...+|. -+..+.+.+..+|+ ..+.+|.|++... ..-..+.. ..+
T Consensus 160 s~-~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 160 SQ-FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hh-hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 55 5566666665443332 12223334555554 4466777766532 11111111 011
Q ss_pred ----hHHHHhhcC-----CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHH
Q 009700 414 ----IKPLCDLLV-----CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYE 483 (528)
Q Consensus 414 ----l~~L~~ll~-----~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~ 483 (528)
++.=.++|. .+|+.++...+++|..++.-.. ..+.++.-|+...+..+- .-++++++.
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~------------GRe~lR~kgvYpilRElhk~e~ded~~~ 304 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA------------GREVLRSKGVYPILRELHKWEEDEDIRE 304 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH------------hHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence 222224443 3678899999999887764322 367788999999999985 678999999
Q ss_pred HHHHHHHHhcCCCc
Q 009700 484 KAVKLLERYWVEEE 497 (528)
Q Consensus 484 ~a~~ii~~~~~~~~ 497 (528)
.+..++.-....+.
T Consensus 305 ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 305 ACEQVVQMLVRLEP 318 (353)
T ss_pred HHHHHHHHHHhccc
Confidence 99999887776433
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00068 Score=68.32 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=181.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+..+-+=|.+.+ +.....|+.+++|+.+ -+.+..+. +-+-++|-++ .+-++..++-+|..+-...|+.
T Consensus 113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 333444455556 7888999999999876 44554443 2233666553 3678999999999998777752
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-------------CCCHHHHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-------------SSDEEVLTD 261 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~ 261 (528)
+-..+....++.+| ++.+-.+...+...+--|+...|......+..++..|..... -+.+-++..
T Consensus 183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 33345678889999 666677777777777778776654444444444444433332 134678888
Q ss_pred HHHHHHhhccCChH-HHHHHHHhCcHHHHHHHhcCC----C---hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 262 ACWALSYLSDGTND-KIQAVIEAGVCPRLVELLLHS----S---TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 262 a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~----~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
.+++|.+.-.-.+. ....+. .+++.++...+.. + .......+.-.-+++..-+..-+.+. ..+..|-+
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~ 336 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQ 336 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHH
Confidence 88888887443222 222211 2445555444421 1 11223334444445544443333332 35677888
Q ss_pred HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 009700 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQG 412 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 412 (528)
+|.+. ...+|.-|+..++.++.. ...+..+-.+ ...++..|+ ..|..+|+.|+..|..++...+.+.
T Consensus 337 fls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~-------- 404 (938)
T KOG1077|consen 337 FLSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ-------- 404 (938)
T ss_pred Hhhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------
Confidence 99988 899999999999999864 2223333332 677788888 6799999999999999988654333
Q ss_pred ChHHHHhhcCCCChHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCL 433 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l 433 (528)
++.-|+++|.+.|+.+++...
T Consensus 405 IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHH
Confidence 355677777777877776544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-05 Score=75.03 Aligned_cols=314 Identities=16% Similarity=0.156 Sum_probs=194.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+.+..++-+++.+++..|.+.+|.++.. ....+.+.+.++--.++..|..++ +..-+.+|+..+..+..... ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444455566689999999999998876 567788888886666677776543 35568899999888877321 111
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.+..|++..++.+.+++++..+..|+.+|+.++..+|. .+...|++..+++.+.+ +..++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 12457889999999999999999999999999988885 67889999999999954 444588889999999987753
Q ss_pred CCChhhh----HHHHHHHHHHh---cCCCH--HHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHHH
Q 009700 234 PAPFDQV----RPALAALQHLI---FSSDE--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLVP 303 (528)
Q Consensus 234 ~~~~~~~----~~~l~~L~~ll---~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~ 303 (528)
....... ..++..+...- ..++. +....+..++..+...=+.....-... ..+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 3322221 22333333321 11222 345555556655544322121111111 36788999999999999999
Q ss_pred HHHHHhHhhcCCcc-hhH------HHhccCChHHHHHHh---cccCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHH
Q 009700 304 ALRTVGNIVTGDDT-QTQ------CVIDNQGLPRLYQLL---TQNYKKSIKKEACWTISNITAGS-RSQIQAVIEANIIA 372 (528)
Q Consensus 304 al~~L~~l~~~~~~-~~~------~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~ 372 (528)
.+..+..+..-... ... .....|...--..+- ... ........ .--.++..+. .-....+++.|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence 99888888653221 111 111112110000110 000 00000000 0001111111 11233456899999
Q ss_pred HHHHHHccC-ChHHHHHHHHHHHHhcC
Q 009700 373 PLVYLLQHA-EFEVKKEASWAISNATS 398 (528)
Q Consensus 373 ~L~~ll~~~-~~~v~~~a~~aL~nl~~ 398 (528)
.|+++.... +..+...|...|+.+..
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999887 88999999988887754
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00023 Score=69.54 Aligned_cols=250 Identities=26% Similarity=0.312 Sum_probs=176.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+++.+.+.+..++..|+..+..+-.. -.+|.|..++.+.+ +.++..|+.+|+.+-. +
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence 578889999999999999999886654322 24899999999998 8999999998888754 2
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchh-----------hHHHHH
Q 009700 153 VVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK-----------LSMLRN 220 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~-----------~~~~~~ 220 (528)
..++.|+.+|. +++..+|..++++|+.+-... .+.+++..+.+... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 25788999888 589999999999999984221 36677777733221 134455
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhh
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 300 (528)
+...+..+-.. ..++.+..++...+..++..+..+++.+.... ..+.+.+...+.+.++.+
T Consensus 169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 55555544332 45677888888888889999999998887654 235677888889999999
Q ss_pred HHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc
Q 009700 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH 380 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 380 (528)
+..++..++.+-.. ..+..+...+... +..++..+...+... .. ......+...+.+
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~ 286 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLID 286 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhhc
Confidence 99999888866542 2344667777776 665555554444411 00 1234455566667
Q ss_pred CChHHHHHHHHHHHHhcCC
Q 009700 381 AEFEVKKEASWAISNATSG 399 (528)
Q Consensus 381 ~~~~v~~~a~~aL~nl~~~ 399 (528)
....++..+..++..+...
T Consensus 287 ~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 287 EANAVRLEAALALGQIGQE 305 (335)
T ss_pred chhhHHHHHHHHHHhhccc
Confidence 7778888888877776653
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-05 Score=70.00 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=187.5
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh----HHHHHHHHhCcHHHHHHHhcCC
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~L~~lL~~~ 296 (528)
+..+|-.|..... .........|.|..-|..+|..+..-+|..++.+..+.+ ..+..++..++++.++.++...
T Consensus 63 cVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 4455555554431 122335667777777888899999999999999887655 3455567889999999999999
Q ss_pred ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH--HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 009700 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ--LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~--lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 374 (528)
+.++...|...+..++...+. ...+++...++.+-. +-... +.-+|......|..+.+-++....+.-..|++..|
T Consensus 141 ddeVAkAAiesikrialfpaa-leaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAA-LEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHH-HHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 999999999999999986554 346777666665432 22333 66788888889999988889988888899999999
Q ss_pred HHHHcc-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccC
Q 009700 375 VYLLQH-AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGS 451 (528)
Q Consensus 375 ~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 451 (528)
..-|.. .|.-|+.+++.....++. .....+++.+.|+++.+++.+.. .+|.-...++-+..+++....-.+..
T Consensus 219 eaElkGteDtLVianciElvteLae--teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvs-- 294 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAE--TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVS-- 294 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHH--HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcC--
Confidence 988876 678888899999888887 34556778889999999999875 44544444666666666433322211
Q ss_pred CcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 452 TTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 452 ~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
....++.+. -.++..-.+.+..+++....|.+.+..+-+.-++
T Consensus 295 --eeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 295 --EEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG 337 (524)
T ss_pred --HHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch
Confidence 122333321 1234444555677788888888887766554443
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00029 Score=71.41 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhc
Q 009700 385 VKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDEC 464 (528)
Q Consensus 385 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 464 (528)
.|..-..++..++..- ++.. ..+++.|++.+.+.++..-..++..+...++..++.+ ...++
T Consensus 375 yRqlLiktih~cav~F-p~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~ii~-- 436 (948)
T KOG1058|consen 375 YRQLLIKTIHACAVKF-PEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASIIE-- 436 (948)
T ss_pred HHHHHHHHHHHHhhcC-hHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH--
Confidence 4444555555544432 2222 2357788888888888777777777777777665432 22221
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCc
Q 009700 465 DGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 465 g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
..++.+-.-.+..++.-|.||+..|...+.
T Consensus 437 ---~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 437 ---KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ---HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 223334444566788889999999888765
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.1e-05 Score=77.59 Aligned_cols=384 Identities=11% Similarity=0.082 Sum_probs=253.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
..-+..+..++.++..++..+.+++... ......++++|.+.++..++. ..++..|...+.++...-.... ..
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~- 313 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DV- 313 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hh-
Confidence 3333444566788888888888776652 225667889999999998877 7899999999888877221111 11
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
.....+.+++..++++..++.........++..-.. .......+++...++ ++...+.+..+..-...++......
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcc
Confidence 124678888888888888888777776666532111 111112356666666 6666666666665555555543221
Q ss_pred --ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 236 --PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 236 --~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.......++|.+..+..+.+..++...+..+..+..-.+ ....+. ...+.+...+++..+.++....+.+..+-.
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~-~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTIS-ELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCcc-ccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 222335567888888888889998888777777654322 111111 367778888888999999998888877665
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
.++..--.......++.+..+-... ..+++.+..+.+-.++.... ..+++...-+.+...+.+....+++.|+..+
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 5544333344556777777777776 78899999999988875322 2334433455555666677789999999988
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHH
Q 009700 394 SNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL 473 (528)
Q Consensus 394 ~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L 473 (528)
..++.....++. ....++.+......++...+...+.++..+.....+.- +++.| ++.+..+
T Consensus 543 ~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei---------~~~~L-----lp~~~~l 604 (759)
T KOG0211|consen 543 PALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI---------TCEDL-----LPVFLDL 604 (759)
T ss_pred HHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH---------HHHHH-----hHHHHHh
Confidence 888763322221 12246666666666667778888888887777654321 33333 6888889
Q ss_pred hcCCCHHHHHHHHHHHHHhcCC
Q 009700 474 QSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 474 ~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
..++.++|+-.+.+.+..+-..
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhh
Confidence 9999999998888888776553
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0015 Score=65.59 Aligned_cols=347 Identities=14% Similarity=0.134 Sum_probs=199.2
Q ss_pred HHHHHHhcCCCH---HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh-
Q 009700 75 PSMVQGVLSENS---GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH- 150 (528)
Q Consensus 75 ~~l~~~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~- 150 (528)
|.+...|.+.+. ......+.+|..+... .+-.+.++ ..++..|...++...+.+....++.++..+.....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 556666665443 4555667777777654 22233332 2455555555554434677777777877776632222
Q ss_pred ----HHHHHhcCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---------
Q 009700 151 ----TRVVIEHGAVPKFVQLLGS-----A--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN--------- 210 (528)
Q Consensus 151 ----~~~i~~~g~i~~L~~lL~~-----~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~--------- 210 (528)
.....+..++|.+..+.-. . ++.+.+.+...+..+...-+.-++.- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 2233334477877776532 1 25666666666666665443322221 1223333221
Q ss_pred --cc----hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCC--hHHHHHHH
Q 009700 211 --EH----SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGT--NDKIQAVI 281 (528)
Q Consensus 211 --~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~--~~~~~~~~ 281 (528)
.. .......-...+++.+ ++..........+..++.+.. ..++..+..++.+++-++..- ++....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~-- 229 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSL---RKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE-- 229 (415)
T ss_pred ccccccccccccHHHHHHHHHHcC---CcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH--
Confidence 00 0111122222333333 233333344557777777654 446788888888888888662 222222
Q ss_pred HhCcHHHHHHHh-cCCChhhHHHHHHHHhHhh----cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 282 EAGVCPRLVELL-LHSSTTVLVPALRTVGNIV----TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 282 ~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
++..+...+ .......+..++.++..++ ...+.... .++..|+.+|.+ +.+...++..++-+..
T Consensus 230 ---~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 230 ---FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred ---HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 344444444 3334444445544444443 33332222 245578888865 4678888888888877
Q ss_pred CCHH--------HHHHHHHc----CcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 009700 357 GSRS--------QIQAVIEA----NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424 (528)
Q Consensus 357 ~~~~--------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 424 (528)
..+. .++.+.+. .++|.|++.....+...|.....||+++..+.+......= -..+++.+++.|+.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~-l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE-LPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-HHHHHHHHHHHhCCC
Confidence 5232 23333332 3678888888877777999999999999997664432221 124899999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhhh
Q 009700 425 DPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 425 ~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|++++..++++|..++...+.
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999987643
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=63.22 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=109.5
Q ss_pred hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 71 LESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 71 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
++-+..|+...+ ..+.+.+.+.+..|.+++-+ +.+...+.+..++..++..|..++ ..+..-++..|+|+|. ++.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d~~ 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-DKT 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-ChH
Confidence 455677777766 46778888888889988765 566778889999999999999998 8999999999999998 788
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
+.+.+++.+++|.++..++++...+...++.++..++...-..|+.+.. +++++++
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 8899999999999999999999999999999999998766667777665 4444444
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00016 Score=70.96 Aligned_cols=316 Identities=14% Similarity=0.134 Sum_probs=191.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCch--------------------------------hHHHHh------
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP--------------------------------IEEVIR------ 113 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--------------------------------~~~~~~------ 113 (528)
+.++.++..+...|..++.-|+..+.+++...+... ++.++.
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccccc
Confidence 457888888888888888877777665554321110 111111
Q ss_pred --cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH-HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh---C
Q 009700 114 --AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV-IEHGAVPKFVQLLGSASDDVREQAVWALGNVA---G 187 (528)
Q Consensus 114 --~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~---~ 187 (528)
.+++|.|-.-+...+ +..+.-.+.-|..+-+ .|.. +.+ .-..+++.|..+|.++++++|..+-.+++++- .
T Consensus 164 sL~~~ipLL~eriy~~n-~~tR~flv~Wl~~Lds-~P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVIN-PMTRQFLVSWLYVLDS-VPDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred CHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhc-CCcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 122333333332333 5555544444444333 1211 111 11246778888999999999988888777764 2
Q ss_pred CChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHH-HHHHHHHH-
Q 009700 188 DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEE-VLTDACWA- 265 (528)
Q Consensus 188 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~- 265 (528)
.+|.. +--...++.++..+ .++++.++..|+.-+..+..-.+..-....++++..++.++.+.++. +...+...
T Consensus 241 s~P~s---~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 241 SSPSS---MDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred cCccc---cCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 22321 11123567777777 77788888877776777776655555666788888899988877653 44433322
Q ss_pred --HHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchh
Q 009700 266 --LSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 266 --l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 342 (528)
+..++.......+ ++. .+++.+...+.++....+..++.-+.-+-...+.+. ......+.+.|+.-|++. +..
T Consensus 317 ~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~-sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDR-SDE 392 (675)
T ss_pred HHHHHHHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCc-hhH
Confidence 2222221111101 232 367888889999999999999988888877777655 455668899999999998 999
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH
Q 009700 343 IKKEACWTISNITAGSRSQ-IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE 403 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 403 (528)
|...++..++++|...... .. .++..|+++......-+...+...+..++.--+++
T Consensus 393 vvl~~L~lla~i~~s~~~~~~~-----~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNSPNLR-----KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred HHHHHHHHHHHHhcCcccccHH-----HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 9999999999999743221 11 13344555555554445555555555554433333
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0005 Score=67.02 Aligned_cols=313 Identities=16% Similarity=0.105 Sum_probs=191.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCCCCCChh
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPPAPFD 238 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 238 (528)
.+.+..++-+++.++|..+.+++..+..+... -..+.+.++-..++..|..+. +..=+.+|+..+..+...+. ....
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence 34444344444599999999999998877764 455566665555566664433 34446788888887776632 1223
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch
Q 009700 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 318 (528)
.-.+++..++.+..+.++..+..++.+++.++-.++ +.++..|++..+...+.++...+....+.++-.+......
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t- 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT- 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch-
Confidence 346888899999999999999999999999998766 5677889999999999886666777788888877764433
Q ss_pred hHHHhccCChHHHHHHhccc------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc--CcHHHHHHHHccCChHHHHH
Q 009700 319 TQCVIDNQGLPRLYQLLTQN------YKK--SIKKEACWTISNITAGSRSQIQAVIEA--NIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~ 388 (528)
++.+...--++.++.-+.+. .+. ..-..+..++..+...-+..+ .+... ..+..|+..|..+.+++|..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 33344333344444444322 022 233444555555544222111 12212 46888999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHH------HCCChHHHHhhc---CCCC---hHHHHHHHHHHHHHHHhhhhchhccCCcchh
Q 009700 389 ASWAISNATSGGTREQIQFLV------SQGCIKPLCDLL---VCPD---PRIVTVCLEGLENILKIGEADKEAGSTTANV 456 (528)
Q Consensus 389 a~~aL~nl~~~~~~~~~~~l~------~~~~l~~L~~ll---~~~~---~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~ 456 (528)
....+..+..-..+.+...+. ..|-..--.++. .... |.....-...+.+..- -
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a--------------L 325 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA--------------L 325 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH--------------H
Confidence 999999988755443322211 111110000000 0000 0000000011111110 1
Q ss_pred hHHHhhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 009700 457 YSEMIDECDGLDKIENLQSHD-NNEIYEKAVKLLERYW 493 (528)
Q Consensus 457 ~~~~l~~~g~~~~l~~L~~~~-~~~v~~~a~~ii~~~~ 493 (528)
....+.++|.++.|..+..+. ++.+..+|.-++..++
T Consensus 326 ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 326 LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 244566899999999997655 9999999999998765
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-05 Score=81.97 Aligned_cols=270 Identities=17% Similarity=0.124 Sum_probs=170.5
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC---Chh
Q 009700 74 IPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG---TSE 149 (528)
Q Consensus 74 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~---~~~ 149 (528)
++.+...+++ ...+.+..|+..|..+...-.. +..-..++|.++.++.++. .+||..|+..|+.+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 3344444443 3566788888888877654311 2222457999999999998 99999999999887762 122
Q ss_pred hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHH---HHhcC------------------------C
Q 009700 150 HTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDL---VLSHG------------------------A 201 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~---~~~~g------------------------~ 201 (528)
.-..+...-++|.|-.++.+ ....+|-.-+..|+.+|.....+... +...| .
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 22234444578888888877 44556666666666665321111100 00010 1
Q ss_pred hHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 202 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 202 i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
+..++.-|..++++-+++..+..|.-||.... ......-+++.|+.+|+..|+.++..-...|..++-.-.. .-+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~ 653 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSV 653 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeH
Confidence 22222222244455566666666666654321 0111134577788888888888887776666655432110 113
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+..++|.|.+.|.+.++.|...|+.++.-|+...--....+.+ +++....+|-++ +.-+|..+|.+|..++.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 3458899999999999999999999999998755433333443 677788899999 99999999999988865
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-05 Score=76.19 Aligned_cols=222 Identities=16% Similarity=0.132 Sum_probs=148.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH---hhhhcCCC---CCCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT---LSNFCRGK---PPAP 236 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~---L~~l~~~~---~~~~ 236 (528)
|..+..+.+..++.+|+.+|..+.... ...+. .....++++ .+.+..++..|+.+ ++|.+-.+ ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 666666777778888888777776522 22222 244556677 77888888887544 45555221 1122
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC--
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG-- 314 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~-- 314 (528)
......++..+...+......|+..|..+|+.+-..+.+.++..++..++..+-..=... -+-..+..=|.+++|
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCcc
Confidence 233456777888888888899999999999998887777777766655444222211100 011122222222222
Q ss_pred ---------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 315 ---------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 315 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
.+.....++..|....++.-|.+. -.+||+.|...++.++...|.... ..+..|++++.+....|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 223445678889999999999888 889999999999999987666443 25678999999998999
Q ss_pred HHHHHHHHHHhcCCC
Q 009700 386 KKEASWAISNATSGG 400 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~ 400 (528)
|..|+.+|..++...
T Consensus 427 RL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888753
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=54.88 Aligned_cols=41 Identities=44% Similarity=0.837 Sum_probs=38.3
Q ss_pred ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009700 147 TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAG 187 (528)
Q Consensus 147 ~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~ 187 (528)
++++++.+++.|++|.|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00029 Score=70.85 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=185.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..+.+.|.|.|+..+.-|+..+.++-+. +....+. . -+| ++|-+++ .+-++..|+-||..+-..+++.
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~-~-DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA-D-DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh-h-hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 45555667788888888888888877553 2332221 1 144 4554443 3568888999999998866543
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc------------cchhhHHHHH
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN------------EHSKLSMLRN 220 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~------------~~~~~~~~~~ 220 (528)
+-..+-...++.+|.+.+-.+...+...+-.++...|+.....+.. .+..|..... .-+.+-++..
T Consensus 183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 2223567889999998888888888888888886665432221110 1112222110 1134556677
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC----CC---HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS----SD---EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 293 (528)
++.+|.++-.............++..++...+. .+ .......++-..+++-+-+..-+.+.. .+..|.++|
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFL 338 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHh
Confidence 777777772222222222333444444443331 11 122333333333443332322233333 678899999
Q ss_pred cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHH
Q 009700 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAP 373 (528)
Q Consensus 294 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 373 (528)
.+.+..+|.-|+..+..+++..... +.+... .+.++..|+...|..+|+.|...|..+|.. +..+. ++.-
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~e 408 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAE 408 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHH
Confidence 9999999999999999999875443 234333 778999998555999999999999999853 22222 4667
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcC
Q 009700 374 LVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
|++.|.+.++.+|++...=+.-++.
T Consensus 409 lLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 409 LLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHH
Confidence 8888888999999887766555554
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=79.71 Aligned_cols=378 Identities=12% Similarity=0.120 Sum_probs=217.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc-CChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS-GTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 152 (528)
...+...+.+.+|..|..++.-|-.+...-+..+........+...+.++|.+++ .-.|.-|.+-++-+-. ++...++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 3445556678889888776544433433322222222223445688899998887 7788888777665544 2333333
Q ss_pred HHHhcCChHHHHHhhCCC---------CHHHH-------------HHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc
Q 009700 153 VVIEHGAVPKFVQLLGSA---------SDDVR-------------EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN 210 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~---------~~~i~-------------~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~ 210 (528)
.+ +..|+.-|-.+ +.++. -..-.=|+|+|.+-. +-..+-.++++-+
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence 33 34444443221 11111 112223344443211 0112344455554
Q ss_pred cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH
Q 009700 211 EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290 (528)
Q Consensus 211 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 290 (528)
.+....-+.-|++-+..++.............++|.|.+.=.+++..|+.....+-..|..++...++..... ++.-|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNE-ILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHH
Confidence 4444555556666666666554333334456777888887778899998888777777777766666666654 888899
Q ss_pred HHhcCCChhhHHHHHHHHhHhhcCCcch--hHHHhccCChHHHHHHhcccCchhHHHHH---HHHHHHHhc-----CCHH
Q 009700 291 ELLLHSSTTVLVPALRTVGNIVTGDDTQ--TQCVIDNQGLPRLYQLLTQNYKKSIKKEA---CWTISNITA-----GSRS 360 (528)
Q Consensus 291 ~lL~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~-----~~~~ 360 (528)
.-+.+..|.+|+.+|-+|..+..+.+.. .+.+- .+...+...+.+- ...||+.| +.+|+-++. .+..
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 9999999999999999999999886532 11111 3444455555555 56677665 455555553 1222
Q ss_pred HHHHHHHcCcHHHHHH--HHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHH-HHHHHH
Q 009700 361 QIQAVIEANIIAPLVY--LLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTV-CLEGLE 437 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~-~l~~l~ 437 (528)
.-+.+++ .++|.|++ ++ +.-.++|..++.++..++...+.....++. .+++.|.+....-.+.+... ++.+ .
T Consensus 1123 ~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~ 1197 (1702)
T KOG0915|consen 1123 KGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-I 1197 (1702)
T ss_pred cHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-h
Confidence 2223332 36777764 33 566899999999999999865544333333 36888888887766665543 2222 2
Q ss_pred HHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHH
Q 009700 438 NILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482 (528)
Q Consensus 438 ~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~ 482 (528)
++-...- .+.-+......-.++.|..+.++-|..+-
T Consensus 1198 ~~e~eal---------Dt~R~s~aksspmmeTi~~ci~~iD~~vL 1233 (1702)
T KOG0915|consen 1198 NIETEAL---------DTLRASAAKSSPMMETINKCINYIDISVL 1233 (1702)
T ss_pred hhHHHHH---------HHHHHhhhcCCcHHHHHHHHHHhhhHHHH
Confidence 2211110 11123333344456677766666655544
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-05 Score=62.58 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=99.6
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+.+..||.-.....+.+.+.+...-|.|++. +|.+-..+.+..++..++..|..++..+.+.++..|+|+|.+.. +.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 3456666666555558999999999999998 78888899999999999999999999999999999999998876 678
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+.+.++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 889999999999999 7888888889999999998765
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-06 Score=54.25 Aligned_cols=41 Identities=44% Similarity=0.653 Sum_probs=38.0
Q ss_pred CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 358 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
++++++.+++.|++|.|+.+|.++++.++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999863
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00028 Score=68.99 Aligned_cols=214 Identities=24% Similarity=0.319 Sum_probs=153.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.++.+.+++.+.+ ..++..|++.++.+.. .-+++.+..++.+.++.+|..++.+|+.+- .+.
T Consensus 44 ~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---- 105 (335)
T COG1413 44 AADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---- 105 (335)
T ss_pred hHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh----
Confidence 5888899999986 8999999999777654 236899999999999999999999999872 221
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCH------------HHHHHHH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDE------------EVLTDAC 263 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a~ 263 (528)
.+++++.++..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+.
T Consensus 106 -----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 -----AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 5788999995578999999999999988754 235566666665442 2344444
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhH
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSI 343 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 343 (528)
.+++.+-.. ..++.+...+.+....++..|..+|+.+.... ..+.+.+...+.+. +..+
T Consensus 171 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~v 229 (335)
T COG1413 171 EALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEV 229 (335)
T ss_pred HHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHH
Confidence 444443321 24667777788877788888888888777654 23445677777777 8888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHH
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAIS 394 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 394 (528)
|..++.+++.+-.. ..++.++..+...+..++..+..++.
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 88888888777321 23456666777777776666665554
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00055 Score=68.87 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=167.2
Q ss_pred hhHHHHhcCcHHHHHHhh---------cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-----CH
Q 009700 107 PIEEVIRAGVVPRFVEFL---------DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA-----SD 172 (528)
Q Consensus 107 ~~~~~~~~g~i~~Lv~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~ 172 (528)
..+.++....+..|..+- ....++.+..+|++||+|+...++..+..+++.|..+.++..|+.. +.
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 444455444556665554 2223489999999999999999999999999999999999999875 68
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHhc-CChHHHHHhhcc----------------chhhHHHHHHHHHhhhhcCCCCCC
Q 009700 173 DVREQAVWALGNVAGDSPSCRDLVLSH-GALMPLLAQLNE----------------HSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 173 ~i~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~Ll~ll~~----------------~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
++.-...++|.-++...+..+..+.+. +++..++..|.. ..+......++.++.|+....+..
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 888888888888888777777666544 666666665520 124456777888889998776443
Q ss_pred Ch----hhhHHHHHHHHHHh---cC--CCHHHHHHHHHHHHhhccCChHHH-----------HHHHHhCcHHHHHHHhcC
Q 009700 236 PF----DQVRPALAALQHLI---FS--SDEEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 236 ~~----~~~~~~l~~L~~ll---~~--~d~~v~~~a~~~l~~l~~~~~~~~-----------~~~~~~~~l~~L~~lL~~ 295 (528)
.. .....++..+..++ .. +-......++.+|.++--...... ........+..|+.+|..
T Consensus 174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~ 253 (446)
T PF10165_consen 174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK 253 (446)
T ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence 32 22344455555552 11 125677788888888732211110 000111345666666543
Q ss_pred -----C---ChhhHHHHHHHHhHhhcCCcchhHHHh----------------ccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 296 -----S---STTVLVPALRTVGNIVTGDDTQTQCVI----------------DNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 296 -----~---~~~v~~~al~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
. -.....+.+.+|.+++.......+.+. ...+-..|+.++.+. .+.++..+...+
T Consensus 254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaell 332 (446)
T PF10165_consen 254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELL 332 (446)
T ss_pred HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHH
Confidence 1 135678889999999887654443332 124566788888888 688998888888
Q ss_pred HHHhcCCHH
Q 009700 352 SNITAGSRS 360 (528)
Q Consensus 352 ~nl~~~~~~ 360 (528)
..+|..+..
T Consensus 333 f~Lc~~d~~ 341 (446)
T PF10165_consen 333 FVLCKEDAS 341 (446)
T ss_pred HHHHhhhHH
Confidence 888765443
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00031 Score=72.21 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=162.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---HHHHHHhcCChHHHHHhhccc------hhhHHHHHHHHHhhhhc
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPS---CRDLVLSHGALMPLLAQLNEH------SKLSMLRNATWTLSNFC 229 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~---~~~~~~~~g~i~~Ll~ll~~~------~~~~~~~~a~~~L~~l~ 229 (528)
.+...+.+|++.+++-+-.++..+.+++...+. .++.+.+.=+...+-++|... +....+.-++.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 356677888887777777788888888765543 233456655566677777431 34667888999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCH-HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
..+.......+.+.+|.|+..+.+.+. ++..+++.+|..++. .++..+.+++.|.++.|++.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 965444556678899999999987776 999999999999994 45577889999999999999988 556788899999
Q ss_pred hHhhcCCcchhHH---HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHH-HH----HHHHcCcHHHHHHHHcc
Q 009700 309 GNIVTGDDTQTQC---VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ-IQ----AVIEANIIAPLVYLLQH 380 (528)
Q Consensus 309 ~~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~----~l~~~~~i~~L~~ll~~ 380 (528)
.+++......... -.-..+++.+-..+... ....+-++|..|+.+....+.. .. .-.-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988754421100 00013455666666665 6677888899999988754211 11 11122345556666766
Q ss_pred C-ChHHHHHHHHHHHHhc
Q 009700 381 A-EFEVKKEASWAISNAT 397 (528)
Q Consensus 381 ~-~~~v~~~a~~aL~nl~ 397 (528)
. .+.-|..|......+.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 6 4555655555555554
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0025 Score=69.91 Aligned_cols=342 Identities=17% Similarity=0.154 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
-+.-|+.-+..++...+..-... -..+||.|.++=-+++ +.+|..-..+...+..++....+.... .++.-|+.-|
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~--l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~l 1048 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPY--LKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNL 1048 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhH--HHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhc
Confidence 34444555555554431111111 1346899988877777 899988888888888865655555443 4677777778
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChh--HHHHHHhcCChHHHHHhhccchhhHHHHHH---HHHhhhhcCCC-----CCCCh
Q 009700 168 GSASDDVREQAVWALGNVAGDSPS--CRDLVLSHGALMPLLAQLNEHSKLSMLRNA---TWTLSNFCRGK-----PPAPF 237 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a---~~~L~~l~~~~-----~~~~~ 237 (528)
.+....+|+.++-+|..+....|. ..+.+.+ ....+.+.+ ++-.+.++..+ +.+|+.+|-.- +....
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 888899999999999999977653 2333222 333444444 45556666654 55666665443 22223
Q ss_pred hhhHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhH-HHHHHH--------
Q 009700 238 DQVRPALAALQH-LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVL-VPALRT-------- 307 (528)
Q Consensus 238 ~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~-~~al~~-------- 307 (528)
..+..++|.|+. -+-+.-++++.-++.++..++...+........ .+++.|+.....-++.+. .-++++
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHH
Confidence 344566666652 122556899999999999999887755444333 367777777666555443 223333
Q ss_pred --HhH-hhcCCcchhHHH---h---c----cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 009700 308 --VGN-IVTGDDTQTQCV---I---D----NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 308 --L~~-l~~~~~~~~~~~---~---~----~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 374 (528)
+.. .+.+.+. .+.+ + | ...+|.+.+++.++-.-..|..++..++-++........... ...+..+
T Consensus 1205 Dt~R~s~aksspm-meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al 1282 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPM-METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRAL 1282 (1702)
T ss_pred HHHHHhhhcCCcH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHH
Confidence 111 1111111 1111 0 1 135666666666554445566666666666532111111111 1245566
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 375 VYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 375 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..+.+.+..+++..+.|.+.++....+++.+.+++ ..+..++...++. ...++..+.+|.....
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es~-~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDESL-KSISCATISNIANYSQ 1347 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCCc-cchhHHHHHHHHHhhH
Confidence 666777889999999999999999888877777654 2344444433321 1345555555554443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=66.50 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=153.9
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHh-
Q 009700 123 FLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE-HGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLS- 198 (528)
Q Consensus 123 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~- 198 (528)
+++.-+ +-.+.-|+.|+.++.. .++.|..+-. ...-..++.+++. ...+++-..+.+++-+..... +.+.+-.
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 333334 5678889999999988 6777776543 3344567777766 557889999999998865443 4322221
Q ss_pred cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh--hh-HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhccCC
Q 009700 199 HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD--QV-RPALAALQHLIF--SSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 199 ~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~-~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~ 273 (528)
...+.-++++......+.+.+-++.++.|++...|..... .. .++.+..-.++. -.|++++.+.-..=+.+....
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 2346667777766678899999999999999854332221 11 223333333333 235665554433332222111
Q ss_pred h------------------------------HHHHHHHHh--CcHHHHHHHhcCCChh-hHHHHHHHHhHhhcCCcchhH
Q 009700 274 N------------------------------DKIQAVIEA--GVCPRLVELLLHSSTT-VLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 274 ~------------------------------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~al~~L~~l~~~~~~~~~ 320 (528)
. .+...+.+. .++..|.++++..++. ...-||.-++.++...++...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 0 122223322 4678889999987776 566788899999999998887
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.+...|+-..++.+++++ +++|+-+|+.++..+..
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 888899999999999999 99999999999877653
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.1e-05 Score=75.03 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=146.9
Q ss_pred HHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHH---HhhccCC--hHH-HH
Q 009700 205 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWAL---SYLSDGT--NDK-IQ 278 (528)
Q Consensus 205 Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l---~~l~~~~--~~~-~~ 278 (528)
+..+. .+.+..++..|+..|..|..+. ..-..+....++++...++.|+..|+..+ +|..-.+ .+. -.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 7778888888888888887642 12234567778888888999999885544 5554211 111 12
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH--hc
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI--TA 356 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 356 (528)
.+.+ .++..+...+.+.+..++..|..+||.+-..+++.....++..++..+-..=... +......++- ++
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCccc
Confidence 2333 3788999999999999999999999998877776555555544333222111000 0111111111 11
Q ss_pred -----------CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 009700 357 -----------GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD 425 (528)
Q Consensus 357 -----------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 425 (528)
...+.-..++.+|.--.++.-+.+.-.+||..|...++.++... |.+... .+..|+++++.+.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHH
Confidence 11122334667788888888888888899999999999999853 343333 5889999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009700 426 PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 426 ~~~~~~~l~~l~~i~~~~ 443 (528)
..++..++.+|..|....
T Consensus 424 ~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988764
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00029 Score=64.33 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=147.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
|-++++.-++-.+--|..++.++............+..+-.+++.++++ ....++...+.+++-++-... ..+ .++
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aq-di~ 231 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQ-DID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHH-HHH
Confidence 3344444455556667777877776554444444454566778888876 346788899999988775432 221 111
Q ss_pred --cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC-HHHHHHHH-HcCcHHHHHHHHccC--ChHHHHHHHHHHHHh--
Q 009700 325 --NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS-RSQIQAVI-EANIIAPLVYLLQHA--EFEVKKEASWAISNA-- 396 (528)
Q Consensus 325 --~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl-- 396 (528)
...+.-++.+.+.....+|-+-+|.++.|++... ...+..+. ..++.|..--++..+ |.+++...-..=..+
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 1345566667665546788899999999998733 33444444 344555544444332 444433221111111
Q ss_pred -------------------cCCCC--------HHHHHHHHHC--CChHHHHhhcCCCChH-HHHHHHHHHHHHHHhhhhc
Q 009700 397 -------------------TSGGT--------REQIQFLVSQ--GCIKPLCDLLVCPDPR-IVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 397 -------------------~~~~~--------~~~~~~l~~~--~~l~~L~~ll~~~~~~-~~~~~l~~l~~i~~~~~~~ 446 (528)
..+.+ ...+..+.+. .+++.|..+++...+. .+..|+.-+..+.+..++
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE- 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE- 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence 11111 1233444432 4688888888887766 566788888888887764
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
....+...||-+.|..|.+|+|++|+-.|.+.+..+.+
T Consensus 391 ----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 391 ----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred ----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 35677899999999999999999999999888877654
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0059 Score=64.33 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=203.6
Q ss_pred cCcHHHHHHhhc------CCC-ChHHHHHHHHHHHHHhcC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009700 114 AGVVPRFVEFLD------RHD-LPQLQFEAAWALTNIASG--TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGN 184 (528)
Q Consensus 114 ~g~i~~Lv~lL~------~~~-~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n 184 (528)
.|+++.+++.|. .++ ++.-...|++.++++++- .+..-+..++.-+++.+.-.++++.--+|..|+|.++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 356777888887 222 456778888888888751 11111222233345666667788889999999999999
Q ss_pred hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC---ChhhhHHHHHHHHHHhcCCCHHHHHH
Q 009700 185 VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA---PFDQVRPALAALQHLIFSSDEEVLTD 261 (528)
Q Consensus 185 l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~d~~v~~~ 261 (528)
++...- ++...-..++....++|..+.+-.++..|+.+|..+..+.+.. ....+.+.++.|+++.+.-+.+....
T Consensus 489 ~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 983321 1122222356777788866788889999999999998886432 22334555666666666555554444
Q ss_pred HHHHH-HhhccCChHHHHHHHHhCcHHHHHHHhcC---CCh---hhHHHHHHHHhHh---hcCCcchhH--HHhccCChH
Q 009700 262 ACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLH---SST---TVLVPALRTVGNI---VTGDDTQTQ--CVIDNQGLP 329 (528)
Q Consensus 262 a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~---~v~~~al~~L~~l---~~~~~~~~~--~~~~~~~l~ 329 (528)
++..+ +..+..-....-.++. .+...+.+++.. .++ .-...|.++|..+ ...-+.... .-++..+++
T Consensus 567 vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44433 2333221111122222 255666677764 222 2233333333333 222222111 123445677
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 330 RLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 330 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
.+-.+|.+. -.++-.+++..+.+++...++.--.+. |+++.+.+++.....+.-...+-+|.|++..|.+.....-.
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 777777777 778888888888888764433222233 47888888888888888899999999998877653322110
Q ss_pred -HCCChHHHHhhcCC---CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhc-CCCHHHHHH
Q 009700 410 -SQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS-HDNNEIYEK 484 (528)
Q Consensus 410 -~~~~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~-~~~~~v~~~ 484 (528)
-.-++..+..++.+ .|.+ ...+++.+..++...... ..++...+. -..+..+.. -.+...+..
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~kg~-------~dq~iplf~----~~a~~~l~~~~e~s~~~~~ 790 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCKGL-------LDQYIPLFL----ELALSRLTREVETSELRVM 790 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhcCc-------HhhHhHHHH----HHHHHHHhccccchHHHHH
Confidence 01123333344444 3333 345667776666544321 222333332 123444443 455556666
Q ss_pred HHHHHHH
Q 009700 485 AVKLLER 491 (528)
Q Consensus 485 a~~ii~~ 491 (528)
+.+++-+
T Consensus 791 ~leVvin 797 (1010)
T KOG1991|consen 791 LLEVVIN 797 (1010)
T ss_pred HHHHHHH
Confidence 6555444
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00016 Score=76.81 Aligned_cols=296 Identities=15% Similarity=0.078 Sum_probs=187.1
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC----C
Q 009700 159 AVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK----P 233 (528)
Q Consensus 159 ~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~----~ 233 (528)
+++.+...+.+ ...+.+..|+..|..++..... ...-..++|.++.++ .++...++..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 45666666665 5577888899988888743321 112223788899998 8888999999998888765432 2
Q ss_pred CCChhhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 234 PAPFDQVRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
........-++|.|..++.+ ....++..-+..|..|+.... .+.+.+.-.....++...+.+ +..-
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse---------t~~~ 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE---------TAPE 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc---------cccc
Confidence 33334557888999999887 456667666777777765322 122222222233334444432 0000
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
...+...+.+.+ .+-+....+|.++ ++-||+.-+..|.-||..... .--+.=+++.|+..|.+.|+.+|..-...
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 111122222222 4455677788877 788998888888888752111 01123368899999999999998766666
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHH
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIEN 472 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 472 (528)
|.-++..-... -++.++++.|.+-|.++.+-++..+|.+|..+++.+--.+. .+.++ ++.+.-
T Consensus 641 I~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-------~v~~i------~~~v~P 703 (1431)
T KOG1240|consen 641 IVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP-------AVKDI------LQDVLP 703 (1431)
T ss_pred ccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH-------HHHHH------HHhhhh
Confidence 65443321111 13455788888999999999999999999999987753321 12222 345566
Q ss_pred HhcCCCHHHHHHHHHHHHHhc
Q 009700 473 LQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 473 L~~~~~~~v~~~a~~ii~~~~ 493 (528)
|.-|+|.=|+..+..+|....
T Consensus 704 lL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 704 LLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred heeCchHHHHHHHHHHHHHHH
Confidence 789999999998887776543
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=54.99 Aligned_cols=55 Identities=24% Similarity=0.580 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
+.+|..|+|+|++++...+...+.... .++|.|+.+|.+++..||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998888888777554 5999999999999999999999999875
|
... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.012 Score=61.65 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=107.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
.+.+++...+.|.+++...-..+..+.... | ...+. .++.+.+=+.+++ +.+|..|++.++.+-. ++...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence 567777777888888877777777776652 3 22221 3778888888888 9999999999988754 33222
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+++++.+++.++++.+|..|+.++.++-.-++ +.+.+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus 127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357899999999999999999999999975554 3566677777777777 889999999999999998765
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.9e-05 Score=60.17 Aligned_cols=87 Identities=29% Similarity=0.458 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 117 VPRFVEFL-DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 117 i~~Lv~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
||.|++.| ++++ +.++..|+++|+.+-. + .+++.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 58899999 6565 9999999999995532 2 24899999999999999999999999982
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
....++.|..++.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12268889999966667777888888874
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=67.15 Aligned_cols=186 Identities=19% Similarity=0.137 Sum_probs=120.8
Q ss_pred cCCCHHHHHHHHHHHHhhccCC--hHHHHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCC
Q 009700 252 FSSDEEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG 327 (528)
Q Consensus 252 ~~~d~~v~~~a~~~l~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 327 (528)
.+.|++.+..++..|..++.+. ......+... .++..+...+.+....+...|+.++..++...........+ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4568888999998888887655 2222333221 45667788888888889999999999999766555544433 57
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc-HHHHHHHHccCChHHHHHHHHHHHHhcCCCC--HHH
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI-IAPLVYLLQHAEFEVKKEASWAISNATSGGT--REQ 404 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~--~~~ 404 (528)
++.|+..+.++ ..-++..|..+|..++...+... .+ ++.+...+.+.++.+|..++..+..++...+ ...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88899999888 88899999999999987554111 12 5667777889999999999999999877544 111
Q ss_pred HHH-HHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 405 IQF-LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 405 ~~~-l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
... ..-..+++.+..++.+.+++++..+-.++..+....+.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 111 00123678899999999999999999999998877654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9e-05 Score=68.01 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--hhHHHHHHh--cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHH
Q 009700 168 GSASDDVREQAVWALGNVAGDS--PSCRDLVLS--HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPA 243 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~--~~~~~~~~~--~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 243 (528)
.+.+.+.|..++.-|..++... ......+.. ..++..+...+ .+....+...++.++..++......-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5578999999999999988554 222222221 13445666666 666778999999999999877543333456788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
+|.|+..+.+....++..+..+|..++...+..... +++.+...+.+.++.++..++..+..+....+.....+-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 999999999999999999999999998865411111 256777888999999999999999999866551111111
Q ss_pred c----cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 324 D----NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 324 ~----~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
. ..+++.+...+.++ ++.||..|-.++..+....++....
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 1 24778888999999 9999999998888886644444433
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.93 E-value=8e-05 Score=57.17 Aligned_cols=95 Identities=19% Similarity=0.326 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
.|+.++++|+.++.+-+..+...++ .++|+++..+.+++.+||..||.+|.|++.....+...++.+ ++..|+.++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence 3677888888887665555655554 489999999999999999999999999998765555555544 8889999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 009700 423 CPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 423 ~~~~~~~~~~l~~l~~i~~ 441 (528)
..|+.++..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987654 77777764
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0024 Score=57.15 Aligned_cols=245 Identities=18% Similarity=0.232 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+.....++.|+..|+++.... . +..+.+...++. ...+.+.+.+|+.... ..++|.
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~ 71 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPV 71 (289)
T ss_pred cHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHH
Confidence 334567788888888876542 2 333344444433 4566677777777654 346788
Q ss_pred HHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC--------
Q 009700 163 FVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-------- 232 (528)
Q Consensus 163 L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-------- 232 (528)
|+..|.. ..+-+|..|..+|+++. + +. .++.+-+.. +++-..+...+..++..+-+..
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 8877765 45778888888888875 2 21 233333444 5555555555555555443221
Q ss_pred -------CCCChhhhHHHHHHHHH-HhcCCCHHH-HHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHH
Q 009700 233 -------PPAPFDQVRPALAALQH-LIFSSDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVP 303 (528)
Q Consensus 233 -------~~~~~~~~~~~l~~L~~-ll~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 303 (528)
|.+. ....-+.-+-. ++..+.+.. +..+.+.|.|+-. .+ .+..|..-+..++.-++..
T Consensus 140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADDSALFRHE 206 (289)
T ss_pred CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccchHHHHHH
Confidence 1111 11122333333 333333333 3345555555432 11 3455667777788889999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE 382 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 382 (528)
+..++|.+-+ .-.++.|.+.|... .++.||.+|+.+|+.++. ++ .++.|.+.+.+.+
T Consensus 207 vAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence 9999997654 23456677776543 278999999999999963 33 4566777788888
Q ss_pred hHHHHHHHHHHHHhcC
Q 009700 383 FEVKKEASWAISNATS 398 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~ 398 (528)
+-|++.+..+|.-+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888765543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.9e-05 Score=57.92 Aligned_cols=87 Identities=29% Similarity=0.431 Sum_probs=70.4
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 244 LAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 244 l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
+|.|++.+ .++++.++..++++|+.+. .. .+++.|..++.++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 7889999999999999653 11 26889999999999999999999999873
Q ss_pred hccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 323 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
+...++.|.+++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12367789999988746677999998875
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.048 Score=57.32 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=125.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 009700 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAV 160 (528)
Q Consensus 81 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 160 (528)
+.+++...+..|++.+..-+..+ .+ . .-+.|-+++...+.+ .+++.-.-.-|.+++...|+..-. ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 56667777777776644333332 22 2 224677788877666 899999888999999977744332 46
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
+.+.+=++++++.+|..|+++++.+= .++.-. .+++++.+++ .+++..+++.|+.++..+-+-++. ....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhhc
Confidence 88888899999999999999999872 222212 2678888888 888999999999999999866432 2223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
.|.+..+..++.+.|+.+..+|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 45677778888899999999999999988654
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0014 Score=64.60 Aligned_cols=278 Identities=15% Similarity=0.118 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF 163 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 163 (528)
.-..+.+++++.+..+.... - ....++ ..+..|-.+|+++. ...|..|+++|..++...|+... + +=+-+
T Consensus 276 k~emV~lE~Ar~v~~~~~~n--v-~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-v----cN~ev 345 (898)
T COG5240 276 KFEMVFLEAARAVCALSEEN--V-GSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-V----CNKEV 345 (898)
T ss_pred cchhhhHHHHHHHHHHHHhc--c-CHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-e----cChhH
Confidence 33455666666665544331 0 011111 12455555666665 56666666666666664332211 0 11233
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHH
Q 009700 164 VQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPA 243 (528)
Q Consensus 164 ~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 243 (528)
-.++.+.+..+...|+..|..- +..+.-+.+ +..+..++ .+-+.....-+..++..||-..|.... ..
T Consensus 346 EsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~----s~ 413 (898)
T COG5240 346 ESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKL----SY 413 (898)
T ss_pred HHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHH----HH
Confidence 3344444444444444444332 111111111 11122222 222333333444444555544343322 23
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHhHhhcCCcchhHH
Q 009700 244 LAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-TTVLVPALRTVGNIVTGDDTQTQC 321 (528)
Q Consensus 244 l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~ 321 (528)
+..|...| +.+.-+....+..+++.+....++..+. .++.|+..+.+.. +.+....+.+||.=....+.-.
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~-- 486 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG-- 486 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc--
Confidence 33444333 3456677888888888877776554443 4566777776533 3444444444443222111111
Q ss_pred HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 322 VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
..+..+..-+--. +.-+|..|..+|+-++-.-.+ .+....+...|-+++.+.|.++|..|..+|.++-.
T Consensus 487 ----~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 487 ----KYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ----hHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 1233344333334 667899999999887653211 11222355677788999999999999999998864
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0069 Score=59.96 Aligned_cols=279 Identities=14% Similarity=0.123 Sum_probs=141.6
Q ss_pred HHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhHHHHHHhcCChHHHHHhhccchh
Q 009700 137 AWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS--PSCRDLVLSHGALMPLLAQLNEHSK 214 (528)
Q Consensus 137 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~Ll~ll~~~~~ 214 (528)
+++...+...+++....+ .|.|-..|++..+.+.-.++++++.++... ++.-+. .+..|-.+| +++.
T Consensus 248 vr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~-----~vs~L~~fL-~s~r 316 (898)
T COG5240 248 VRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQ-----TVSSLRTFL-KSTR 316 (898)
T ss_pred HHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHH-hcch
Confidence 344444444444443333 355666666666777777888887776443 221111 344444455 6777
Q ss_pred hHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc
Q 009700 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 215 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
...+-.|+.+|..|+...|.... .+-+-+-.++.+.+..+..+|+-+|.. .+.++.+..++. .++.+++=+.
T Consensus 317 v~~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~S 388 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMS 388 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCceee----ecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhc
Confidence 78888888888888877654322 222334455555666666665555543 234444444333 3444444444
Q ss_pred CCChhhHHHHHHHHhHhhcCCcc-hh----HHHhccCC-------hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDT-QT----QCVIDNQG-------LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~-~~----~~~~~~~~-------l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 362 (528)
++-.-+...|++.|+..-..... .. ..+.+.|. ++.+..+++. +|.-++.|+..|+.+..++.-..
T Consensus 389 D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~ 466 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQ 466 (898)
T ss_pred cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhH
Confidence 44444455555555544322111 00 01111221 2223333322 33444444444444333211110
Q ss_pred --HHHH----HcC--------cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHH
Q 009700 363 --QAVI----EAN--------IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 363 --~~l~----~~~--------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~ 428 (528)
-.++ +.| .+..+..-+--.+.-+|..|..||..++.+.+.... ...+...|-++++..|.++
T Consensus 467 I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----~~sv~~~lkRclnD~DdeV 542 (898)
T COG5240 467 ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----PQSVENALKRCLNDQDDEV 542 (898)
T ss_pred HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc----HHHHHHHHHHHhhcccHHH
Confidence 0000 000 122222222223556888999999888876543221 2234567888999999999
Q ss_pred HHHHHHHHHHHH
Q 009700 429 VTVCLEGLENIL 440 (528)
Q Consensus 429 ~~~~l~~l~~i~ 440 (528)
+..+--++.++=
T Consensus 543 RdrAsf~l~~~~ 554 (898)
T COG5240 543 RDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhh
Confidence 998887777654
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.01 Score=63.14 Aligned_cols=260 Identities=14% Similarity=0.116 Sum_probs=161.5
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
+++..|...|++.+ ..++-.|+..++.++...|..- . ..++...+.++.. .++..-..++-+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56778888888888 8999999999999999665221 1 2345566665544 335566688889999985542211
Q ss_pred HHHHhcCChHHHHHhhcc-------chhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHH-HHHhcCCCHHHHHHHHH
Q 009700 194 DLVLSHGALMPLLAQLNE-------HSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAAL-QHLIFSSDEEVLTDACW 264 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L-~~ll~~~d~~v~~~a~~ 264 (528)
..+.+ +++.++..|.. +....++..||.+++.+++.. |.........+.+.| ...+-+.+..++..|..
T Consensus 416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 22222 45556655521 224578999999999999886 322223334344433 34455667778888888
Q ss_pred HHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH-hcccCchhH
Q 009700 265 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL-LTQNYKKSI 343 (528)
Q Consensus 265 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v 343 (528)
++........+. .. +++ |+.....-....+.++-..+..-....+.....+++ .++.. +.+= +..+
T Consensus 494 AlqE~VGR~~n~-----p~-Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-----PH-GIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCC-----CC-chh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 887554331111 00 111 222223333344556666666555555555544443 23222 5555 8999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
|..++|+|.+++...++. ...+.+|+++....+++...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999999999987655543 345789999999999988888777666666655
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0081 Score=57.66 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=161.9
Q ss_pred HHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----h----hhHHHHHhcCChHH
Q 009700 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT-----S----EHTRVVIEHGAVPK 162 (528)
Q Consensus 92 a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~i~~~g~i~~ 162 (528)
.++.+.-++.. +.-...+++.+.++.|+.+|.+.+ .++....+..|..++..+ . .-.+.+++.++++.
T Consensus 104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 34455544443 344557789999999999999998 899999999999988732 1 23456778889999
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc-hhhHHHHHHHHHhhhhcCCCCCC
Q 009700 163 FVQLLGSAS------DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 163 L~~lL~~~~------~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
|++-+..-+ ..-...++..+-|+....+.+...+.+.|.+.-|+..+... +-..-..+|..+|+-+..+....
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 999876532 23456677888899988888888889988888777755322 34455678888888887775322
Q ss_pred C-hhhhHHHHHHHHHHhc----CC-----CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHH
Q 009700 236 P-FDQVRPALAALQHLIF----SS-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 236 ~-~~~~~~~l~~L~~ll~----~~-----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 305 (528)
. ...--.++..+++-+. ++ ..+..++...+|+.+.... ++...++...+++...-+++. ....+..++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 1 1112334444444332 21 2456667777777666554 456667777677766666665 555678899
Q ss_pred HHHhHhhcCCc--chhHHHhccCChHHHHHHhc
Q 009700 306 RTVGNIVTGDD--TQTQCVIDNQGLPRLYQLLT 336 (528)
Q Consensus 306 ~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~ 336 (528)
++|-.+..+.+ .....+++..++..+..+.-
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99998888776 34445667667777666554
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=67.36 Aligned_cols=298 Identities=16% Similarity=0.201 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-----ChhhHHHHHhcCCh
Q 009700 86 SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG-----TSEHTRVVIEHGAV 160 (528)
Q Consensus 86 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i 160 (528)
..++.++++.|.-++... ..-.+....+...+...+.... ++++..++.++..+..+ .|+..+.-...|.+
T Consensus 269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f 344 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF 344 (728)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence 357788887777665442 1111122223344444555666 89999999988877541 22222222222211
Q ss_pred HHHH-------HhhCCCCHHHHHHHHHHHHHhhCCC----hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 161 PKFV-------QLLGSASDDVREQAVWALGNVAGDS----PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 161 ~~L~-------~lL~~~~~~i~~~a~~~L~nl~~~~----~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
-.+. ...++..+..+...+.++.+|.... |+-++. ..+.++.-..++.+.-++..|..++.-+.
T Consensus 345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV 419 (728)
T KOG4535|consen 345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYV 419 (728)
T ss_pred HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEE
Confidence 1110 1122344566777777788775332 111111 12222333323344456677778877777
Q ss_pred CCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC----Ch---HHHHHHHHhCcHHHHHHHhc---CCCh
Q 009700 230 RGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG----TN---DKIQAVIEAGVCPRLVELLL---HSST 298 (528)
Q Consensus 230 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~l~~L~~lL~---~~~~ 298 (528)
-++ ..........+...+...+.+..-..++.+.|+++++++. .+ .....+.. -.+..++..-. ..+.
T Consensus 420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKD 498 (728)
T ss_pred eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence 665 3334455567777777777776778899999999999752 11 11111111 12333333221 2567
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChH----HHHHHh----cccCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLP----RLYQLL----TQNYKKSIKKEACWTISNITAGSRSQIQAV-IEAN 369 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~----~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~ 369 (528)
.++..+.++|+|+...-+ .+.+.+.-. .+.+++ ... ...||.+||++++|+..+..-..+.. ....
T Consensus 499 kV~~navraLgnllQvlq----~i~~~~~~e~~~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~ 573 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQ----PIEKPTFAEIIEESIQALISTVLTEA-AMKVRWNACYAMGNLFKNPALPLQTAPWASQ 573 (728)
T ss_pred hhhhHHHHHHhhHHHHHH----HhhhccHHHHHHHHHHhcccceeccc-ccccchHHHHHHHHhhcCccccccCCCchHH
Confidence 899999999999875322 122211111 111222 223 67899999999999987422111100 1123
Q ss_pred cHHHHHHHHcc-CChHHHHHHHHHHHHhcC
Q 009700 370 IIAPLVYLLQH-AEFEVKKEASWAISNATS 398 (528)
Q Consensus 370 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~ 398 (528)
+++.|+.++.+ .+.+||..|+.+|.--..
T Consensus 574 ~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 574 AFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 57778777754 589999999999875544
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.017 Score=55.50 Aligned_cols=224 Identities=15% Similarity=0.131 Sum_probs=158.8
Q ss_pred HhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccc----CCc----hhHHHHhcCcHHHHHHhhcCCC-----ChHHHHH
Q 009700 69 KKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIE----RCP----PIEEVIRAGVVPRFVEFLDRHD-----LPQLQFE 135 (528)
Q Consensus 69 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~i~~Lv~lL~~~~-----~~~v~~~ 135 (528)
.++++++.+++.|.+++.++....+..+..+.... ... -++.+++.++++.|++.+..=+ ...-...
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 45678999999999999999999998888876542 112 2567788999999999886432 1233466
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---
Q 009700 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN--- 210 (528)
Q Consensus 136 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~--- 210 (528)
++.++-|+..-.++.+..+++.|.+.-|++-+.. +.......|..+|+-+..++...+..+-...++..+++.+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 7788899999889999999999988888774433 44566778888888888887777777778888888888773
Q ss_pred -cc----hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--HHHHHHHHh
Q 009700 211 -EH----SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN--DKIQAVIEA 283 (528)
Q Consensus 211 -~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~ 283 (528)
++ ...++.++...+|+.+...+...........+..+.-+++. ....+..++.+|-+...+++ .+...+++.
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI 360 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 11 24567788888888877775444444445555555555544 44456667778877776655 556666776
Q ss_pred CcHHHHHHHh
Q 009700 284 GVCPRLVELL 293 (528)
Q Consensus 284 ~~l~~L~~lL 293 (528)
.++..+..++
T Consensus 361 lGLrtiF~~F 370 (536)
T KOG2734|consen 361 LGLRTIFPLF 370 (536)
T ss_pred HhHHHHHHHH
Confidence 6666655544
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0039 Score=63.48 Aligned_cols=241 Identities=19% Similarity=0.226 Sum_probs=149.6
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
|+...|.+.|++.+++.++.-++.-|+-...++... . +...+-..|..++.-.-+.|..+++-+-..+.. .+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~--e-----iYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e 484 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE--E-----IYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE 484 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH--H-----HHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH
Confidence 456667777776665677777766665555543321 1 224455556655555566666666655433321 11
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH--hhccC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS--YLSDG 272 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~ 272 (528)
++.-++..-...+.+.+++-..--++....+.. ...=+.+-+++.+.|+-++.....++. +...+
T Consensus 485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq-------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg 551 (929)
T KOG2062|consen 485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ-------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTG 551 (929)
T ss_pred ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh-------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC
Confidence 233344444344455555544433333222211 244456667788888888877766554 33333
Q ss_pred ChHHHHHHHHhCcHHHHHHH-hcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVEL-LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
+. +++..|++. .++.+..|++.|.-+||-++..++++ ++..+++|..++++.||..++.+|
T Consensus 552 nn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 552 NN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred ch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHH
Confidence 22 467777777 66788999999999999988776654 456788888777999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 352 SNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 352 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
+-.|+++...- .+..|-.+..++..-||+-|+.++.-+....+
T Consensus 614 GIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 614 GIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 99988543321 23344445567777899999998887766444
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=49.02 Aligned_cols=55 Identities=29% Similarity=0.501 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+.++..++|+|++++...++....... .+++.|..+|.++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999888777766555 4999999999999999999999999975
|
... |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.029 Score=59.36 Aligned_cols=344 Identities=17% Similarity=0.163 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHHHhccc-CCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 009700 85 NSGLQLEATTQFRKLLSIE-RCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF 163 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 163 (528)
++.....|+..+..+++.- +..+-+...+.=+++.+...++++. --++..|+|+++.+++.+-.....+ ..++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 3445555666666555432 1333333444445666666777777 7899999999999996322222222 2355666
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHh--cCChHHHHHhhccchh----------------------hHHH
Q 009700 164 VQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLS--HGALMPLLAQLNEHSK----------------------LSML 218 (528)
Q Consensus 164 ~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~Ll~ll~~~~~----------------------~~~~ 218 (528)
.+.|. +.+-.++..|+-+|..+..+.+.....+.. .+.++.|+.+.+...+ .++.
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 66666 667788999999999888776644332222 0122333333321111 1222
Q ss_pred HHHHHHhhhhcCC---C-C--CCChhhhHHHHHHHHHHhc-------------------------CCCHHHHHHHHHHHH
Q 009700 219 RNATWTLSNFCRG---K-P--PAPFDQVRPALAALQHLIF-------------------------SSDEEVLTDACWALS 267 (528)
Q Consensus 219 ~~a~~~L~~l~~~---~-~--~~~~~~~~~~l~~L~~ll~-------------------------~~d~~v~~~a~~~l~ 267 (528)
.+...+...+... . + ........|++..+..++. +.-.++-+.++..+.
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS 667 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3333333333332 1 1 1112233455555444443 222333333333333
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc-----CChHHHHHHhcccC-ch
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN-----QGLPRLYQLLTQNY-KK 341 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~-~~ 341 (528)
++.....+..- .--++++.+.+.+....-.......-+|.|+++.... .+... -++..+..+|.+.. ..
T Consensus 668 ~~t~~~~~Isp--~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D 742 (1010)
T KOG1991|consen 668 SLTFLSKEISP--IMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGED 742 (1010)
T ss_pred hhhhhhcccCH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCch
Confidence 33222111000 0114566667777766666677778888888754332 12211 23445555665531 33
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc----c--CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH
Q 009700 342 SIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ----H--AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415 (528)
Q Consensus 342 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 415 (528)
.-...||..+.-+.-.....++. .+|.++++.. . .+...+..+..++.|.....+..-...|-+.|...
T Consensus 743 ~d~~~a~kLle~iiL~~kg~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~ 817 (1010)
T KOG1991|consen 743 SDCESACKLLEVIILNCKGLLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLN 817 (1010)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcc
Confidence 44556777777665422222222 4555555432 2 35678888888888888777777788887877765
Q ss_pred HHHhhc--------CCCChHHHHHHHHHHHHHHHhhh
Q 009700 416 PLCDLL--------VCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 416 ~L~~ll--------~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+..+. +..|.+ .++-+|..++..++
T Consensus 818 ~ff~~wf~~~~~~~~~HDkK---lcvL~l~tli~l~~ 851 (1010)
T KOG1991|consen 818 NFFTLWFQFINQFKKVHDKK---LCVLGLLTLISLGQ 851 (1010)
T ss_pred cHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHhccc
Confidence 544432 222333 45556667777653
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00037 Score=67.12 Aligned_cols=263 Identities=18% Similarity=0.155 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCChhHHHHHHhcCChH--
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA-----GDSPSCRDLVLSHGALM-- 203 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~-- 203 (528)
.++.+++.+|..++..-.-.+..+++ ....+..-+....+.++..+..++..+- .+.|+..+.-...|.+-
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 46777887877777633333333332 2234444556678889999888887764 22232211111112111
Q ss_pred ----HHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHH
Q 009700 204 ----PLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 204 ----~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
+.-....++.....+...|-+++++.... .......-...+-.+..+-.+.+.-+...|.+++.-+.-++.-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 11112223334567778888888887553 1111111111122222222233455777888888777666544444
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC----Ccc---hhHHHhccCChHHHHHHhc--ccCchhHHHHHHH
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG----DDT---QTQCVIDNQGLPRLYQLLT--QNYKKSIKKEACW 349 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~---~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~ 349 (528)
...-......+...+.+..-..+..+.|++|||+.. .+. +...+.- -.+..++..-. +..+.+|+..+..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 433344667777777777788999999999999742 222 2222211 11222222221 1225789999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------CcHHHHH-HHHccCChHHHHHHHHHHHHhcCCC
Q 009700 350 TISNITAGSRSQIQAVIEA-------NIIAPLV-YLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~-------~~i~~L~-~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
+|+|+.. ..+.+.+. +-+..++ ...-.+..+||=+||++++|+..+.
T Consensus 507 aLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 507 ALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 9999853 12212211 1112222 2223346789999999999999854
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0077 Score=62.82 Aligned_cols=240 Identities=15% Similarity=0.080 Sum_probs=153.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 119 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
.+-..+..+..|.+-..+.|.+...++........+- -.+...+..+. +..+.++-.|+++++..|+... +.. .
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~ 527 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--L 527 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--c
Confidence 3334444444477777899998877763222221111 12233333333 3556678888888888773322 111 1
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF--SSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
..+++..|+++. ...+.++....+.+|+..+.-+|.......+.+.|.+..++. ++|+.+...+.-++-.++....
T Consensus 528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~- 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA- 605 (1005)
T ss_pred chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-
Confidence 223556666666 666788889999999999998877777777788887776653 5678777777777766665321
Q ss_pred HHHHHHHhCcHHHHHHHhcCCC----hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 276 KIQAVIEAGVCPRLVELLLHSS----TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
+...+.+ ..+|.+++.|..+. ......++..|..+..+.+.-....+-.-.++.+.+..-++.+...-..+..+|
T Consensus 606 ~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 606 NYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred hhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence 2222222 38899999998866 455667788888787776543333444456777777766554788888888899
Q ss_pred HHHhcCCHHHHHHHH
Q 009700 352 SNITAGSRSQIQAVI 366 (528)
Q Consensus 352 ~nl~~~~~~~~~~l~ 366 (528)
..+...+.++...--
T Consensus 685 ra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 685 RALISVTLEQLLTWH 699 (1005)
T ss_pred HHHHhcCHHHHHhhc
Confidence 888876666654443
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.037 Score=55.63 Aligned_cols=300 Identities=15% Similarity=0.115 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCc----hhHHHHhcCcHHHHHHhhcCCC------ChHHHHHHHHHHHHHhcCC-hhhHHH
Q 009700 85 NSGLQLEATTQFRKLLSIERCP----PIEEVIRAGVVPRFVEFLDRHD------LPQLQFEAAWALTNIASGT-SEHTRV 153 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l~~~~-~~~~~~ 153 (528)
+.......+..+.+++...... ......+..++|.+.+...... +..+...+..++..+...- .+..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556667777777776653221 2334445558888887764321 1344455555555555532 333333
Q ss_pred HHhcCChHHHHHhhC----------CCC--HHHHHHHHHHHHH-hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHH
Q 009700 154 VIEHGAVPKFVQLLG----------SAS--DDVREQAVWALGN-VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRN 220 (528)
Q Consensus 154 i~~~g~i~~L~~lL~----------~~~--~~i~~~a~~~L~n-l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~ 220 (528)
++ ..+..+.- ..+ .......+..+.. +++-.+.+.-. .....+..++.+.....++..+..
T Consensus 136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence 32 22232221 011 1112222222222 22222221100 111256667777656667778888
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHh-cCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLI-FSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
++.+++.+.-.-+.. ......+..+...+ ...+ ....+-..|+..-+.-....... .++..|+.+|.+
T Consensus 210 ~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~ 282 (415)
T PF12460_consen 210 ALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC
Confidence 888888777553222 23445555555444 2223 33344444555443322221211 256778888887
Q ss_pred CChhhHHHHHHHHhHhhcCCcc--------hhHHHhcc----CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 296 SSTTVLVPALRTVGNIVTGDDT--------QTQCVIDN----QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+.+...+.+.++-+....+. ..+.+... .++|.+++..... +...|.....+|+++..+-|..+-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence 56788888888888876322 22223332 3456666666665 556788888999999987776542
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.---..++|.|++.|..++.+++..++.+|..+....
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 2222458999999999999999999999999998865
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.011 Score=63.05 Aligned_cols=257 Identities=12% Similarity=0.152 Sum_probs=158.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+++..|+..|.+.+..++-.|+..++.++...|. .. ...++...+.++....+......+|-+|..|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5677888888889999999999999999977762 22 22256677776644445667779999999999875 1222
Q ss_pred hhhHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHH-HHHHHhcCCChhhHHHHHHH
Q 009700 238 DQVRPALAALQHLIFSS--------DEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCP-RLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~--------d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~-~L~~lL~~~~~~v~~~al~~ 307 (528)
.....++|.+.+.+.-+ ...|+..||.+++.++.... .....++.. +.+ .+...+-+.+-.+|..|..+
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHHH
Confidence 34567888888777532 35688888777777765432 222333322 222 23344566788889988888
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH-HccCChHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYL-LQHAEFEVK 386 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~ 386 (528)
+-..+...... ..| + .|+.....- .-..|..+...++.-.+..+..+..+++ .|+.. +.+-+..+|
T Consensus 495 lqE~VGR~~n~-----p~G-i-~Lis~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 495 LQENVGRQGNF-----PHG-I-SLISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHhccCCCC-----CCc-h-hhhhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence 87666432211 011 1 122222222 3344555555555555555555554443 22222 455689999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
..++++|.++.... ++. ...+.++++++...+.+...+..+.-+...
T Consensus 562 elaa~aL~~Ls~~~-pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTE-PKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred HHHHHHHHHHHHhh-HHh----hcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 99999999987743 222 345678888888888877665544443333
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00078 Score=51.69 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhc
Q 009700 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGDSPSCRDLVLSH 199 (528)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~ 199 (528)
++...+.+++|++..++...+.+.+.|++|.+++.. +..+|-+++.|++++.|++.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 356778999999999999999999999999999864 45789999999999999999999988876653
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0003 Score=44.52 Aligned_cols=39 Identities=36% Similarity=0.753 Sum_probs=35.6
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 186 (528)
++.+..+++.|+++.|+.+|.+++++++..++|+|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999996
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.01 Score=60.95 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 241 RPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 241 ~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
...+..|..+|.. +.-+...+...++..+....++.... ++..|+..+.+.. ...-+.++|.-+....+.
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce--~~~i~~rILhlLG~EgP~-- 460 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE--FTQIAVRILHLLGKEGPK-- 460 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc--chHHHHHHHHHHhccCCC--
Confidence 3455666666654 34566677777777776654443332 4556666665533 333445555555443332
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.......+..+...+.-. +..+|..|..++.++.++++... ..+.-.|.+++.+.+.++|..|..+|.++.
T Consensus 461 -a~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 461 -APNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 112234455566555555 77899999999999986544322 345667788899999999999999999887
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.021 Score=57.97 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=147.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
..++...+ ++ ...+..|+..+.......|+..+. ++..++.+..+.+..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 33444444 34 788999999999999887877654 5688999999999999999999999999998765554
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc---CCCHHHHHHHHHHHH-hhccCC
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF---SSDEEVLTDACWALS-YLSDGT 273 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~-~l~~~~ 273 (528)
+...|+++| ..++..-...+-++|..|...+| .+.+..+...+. ++|+.+++.++..|. .+-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 456788888 56666666666677777665433 334444444443 567888998887664 222211
Q ss_pred hHHHH--HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC----CcchhHHHhccCChHHHHHHh------cccCch
Q 009700 274 NDKIQ--AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG----DDTQTQCVIDNQGLPRLYQLL------TQNYKK 341 (528)
Q Consensus 274 ~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~ 341 (528)
.+... .=.+.-++..+-..|.+-...--...+.+|..+-.. .....+.+ ++.+.... ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11111 111112445566666653333233344444444431 11112222 22333322 112 33
Q ss_pred hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH
Q 009700 342 SIKKEACWTISN----ITA--GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415 (528)
Q Consensus 342 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 415 (528)
........++.. ++. .+.....++.+ .++|.+-.+ ....|...+.++..++..+.......++. -++.
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 333222222222 111 34555555555 477766555 45677788888888887654322222221 1223
Q ss_pred HHHhhcCC--CChH----HHHHHHHHHHHHHHhhhh
Q 009700 416 PLCDLLVC--PDPR----IVTVCLEGLENILKIGEA 445 (528)
Q Consensus 416 ~L~~ll~~--~~~~----~~~~~l~~l~~i~~~~~~ 445 (528)
.|..++-. ..++ .++..+.++..+....+.
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 33333322 2233 466777777777766553
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.063 Score=58.10 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=144.1
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHH
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAV 280 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~ 280 (528)
.+.....++.+..++..+...|..++..++... ...+..+...|..-+++.+...+...+.++..|.+..+ +..+.
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~- 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL- 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-
Confidence 344455455678899999999999998842221 22335556666777777788888888888888877655 33333
Q ss_pred HHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc-------CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 281 IEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT-------GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 281 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
+.. .++.++-.++..+...+..|..+|-.++. +++. ....++ .++..|...+-.. ...+......+++.
T Consensus 736 i~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 736 IPK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITH 811 (1176)
T ss_pred HHH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHH
Confidence 333 34444444477788888888888777773 1111 111111 2333333333333 33333333444554
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHH
Q 009700 354 ITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCL 433 (528)
Q Consensus 354 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l 433 (528)
+..........-.-.+++..+.-.|.+..+++++.|+..+.-++..-+....... ...+++.+..+++.....++..+-
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4432222111111234566677778899999999999999999887654443332 224688888888888888888888
Q ss_pred HHHHHHHHhhh
Q 009700 434 EGLENILKIGE 444 (528)
Q Consensus 434 ~~l~~i~~~~~ 444 (528)
..|..+++...
T Consensus 891 ~LlekLirkfg 901 (1176)
T KOG1248|consen 891 LLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhC
Confidence 88888887654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0099 Score=60.79 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=172.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..+-+.|+++++-+|=..++-|+++= .+..- ..++|.+.+.|.+.+ +-++..|..++..|-.... .+
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLk----E~ELl----epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L 168 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLK----EPELL----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HL 168 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcC----cHHHh----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hh
Confidence 45566777888877777776666552 22211 335888899999888 8899999988888876211 11
Q ss_pred HhcCChHHHHHhh-CCCCHHHHHHHHHHHHH----------------------------------hhCCChhHHHHHHhc
Q 009700 155 IEHGAVPKFVQLL-GSASDDVREQAVWALGN----------------------------------VAGDSPSCRDLVLSH 199 (528)
Q Consensus 155 ~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~n----------------------------------l~~~~~~~~~~~~~~ 199 (528)
+. .+-..+-.+| ...++..++.|...|.. .|...|.-+ .
T Consensus 169 ~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~ 242 (948)
T KOG1058|consen 169 IP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----A 242 (948)
T ss_pred cC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----h
Confidence 10 1111112222 22344444444433322 222112111 1
Q ss_pred CChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHH
Q 009700 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 200 g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
..+..+..+| .+.+..+.-.+..+|.+++..+ . .+......++.++. .+|..+.--.+--|..+.....
T Consensus 243 ~~i~~i~~lL-~stssaV~fEaa~tlv~lS~~p-~----alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~---- 312 (948)
T KOG1058|consen 243 RYIRCIYNLL-SSTSSAVIFEAAGTLVTLSNDP-T----ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE---- 312 (948)
T ss_pred HHHHHHHHHH-hcCCchhhhhhcceEEEccCCH-H----HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----
Confidence 1234444455 3335555555555555555431 1 11222223333322 1222222222222333322111
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc------ccCchhHHHHHHHHHH
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT------QNYKKSIKKEACWTIS 352 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~ 352 (528)
.+. .|++--++..|.+++-+++..++.+.-.+++..... . ++..|..-+. +......|..-..++.
T Consensus 313 ~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNve--d-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 313 KIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVE--D-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHH--H-----HHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 111 135556778888899999999998888777643311 1 1112222111 1113467888888999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTV 431 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~ 431 (528)
.++...|+.. +.+++.|++.+.+.++......+..+....... +..+ ...+..|+.-+.. ...++...
T Consensus 385 ~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr-----~~ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 385 ACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLR-----ASIIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred HHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHH-----HHHHHHHHHhhhhhcccccchh
Confidence 8888777754 457899999999988776666666666555532 2221 2234445444433 56677788
Q ss_pred HHHHHHHHHHhhh
Q 009700 432 CLEGLENILKIGE 444 (528)
Q Consensus 432 ~l~~l~~i~~~~~ 444 (528)
++|++...+....
T Consensus 454 alwi~GeYce~~~ 466 (948)
T KOG1058|consen 454 ALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhhhH
Confidence 8998888876554
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.28 Score=53.36 Aligned_cols=184 Identities=15% Similarity=0.145 Sum_probs=113.9
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCChH--HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCC
Q 009700 250 LIFSSDEEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG 327 (528)
Q Consensus 250 ll~~~d~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 327 (528)
..++.+..++..+...|..++..+.. .....++ .+...+..-+++.....+...+.+|..+....+.....++...+
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~-~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I 740 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRID-DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI 740 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33455789999999999999877221 1111111 24555666666777788999999999998766632223444344
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC------cHHHHHHHHcc----CChHHHHHHHHHHHHhc
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEAN------IIAPLVYLLQH----AEFEVKKEASWAISNAT 397 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~------~i~~L~~ll~~----~~~~v~~~a~~aL~nl~ 397 (528)
.+.++.+ +.. +...|+.|..+|-.|++ ++...+.| .+..++..+.. ....+...-+.++..+.
T Consensus 741 ~EvIL~~-Ke~-n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 741 PEVILSL-KEV-NVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHhc-ccc-cHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 4455544 555 88899999999988874 22222222 33344444333 33333333345555554
Q ss_pred C----CCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 398 S----GGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 398 ~----~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
. ..+.+... +++..++.+|.+..++++..|+..+..++...+..
T Consensus 814 ~e~~~~ld~~~l~-----~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 814 QEFKNILDDETLE-----KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHhccccHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 3 22233322 35778888999999999999999998888766654
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.18 Score=52.29 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 240 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
.....+.+-.++.+..+.+...+..++.++.......... .+..|-.++.++...+|-.|.++|..++...+...
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 3567888889999999999999999999988765433222 56777788889999999999999999987655321
Q ss_pred -------HHHh-ccC---ChHHHHHHhcccC---chhHHHHHHHHHHHHhcCC----HHHHHHHH------HcCcHHHHH
Q 009700 320 -------QCVI-DNQ---GLPRLYQLLTQNY---KKSIKKEACWTISNITAGS----RSQIQAVI------EANIIAPLV 375 (528)
Q Consensus 320 -------~~~~-~~~---~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~----~~~~~~l~------~~~~i~~L~ 375 (528)
+.++ +.+ .-..+..+|+.+. -..+.+.....+++++.+. .+.+..+. ..+.++.|.
T Consensus 318 ~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 318 TVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 1111 100 1112233333331 1223333333444443211 11111111 133455555
Q ss_pred HHHcc-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcc
Q 009700 376 YLLQH-AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA 454 (528)
Q Consensus 376 ~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~ 454 (528)
.+|.. +..+.+.....++..++... ++.. .-++..||..+.+. +....+...|..+-..++......++..
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~-pdsK-----e~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEEN-PDSK-----ERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhC-cchh-----hHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhH
Confidence 55543 34666666777776666532 2221 12566777776532 2233445555555555554332211100
Q ss_pred -----hhhHHHhhhcccHH------------------HHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 455 -----NVYSEMIDECDGLD------------------KIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 455 -----~~~~~~l~~~g~~~------------------~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
-.+...+.+++... .+.....+++.+++++|...+...-
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 00122223333332 3334456777788888877776554
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00047 Score=43.62 Aligned_cols=39 Identities=49% Similarity=0.625 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+....+++.|+++.|+.++.+++++++..|+|+|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 356678899999999999999999999999999999863
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.037 Score=58.01 Aligned_cols=313 Identities=15% Similarity=0.099 Sum_probs=180.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+..|.....+...+.++.+.. .....+. .-++...+..+.-+..+-++..|+++++..++ ......+ ..+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence 445665557777777665542 1111111 11344555666555446788888888877774 2211111 1356777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhhhcCCCCCCChhhhH
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 241 (528)
|.++....+.++......+|+..+.-+|++... .+..+.|.++.+.. .+.++.+...+-.++-.++.. .........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHH
Confidence 777777788899999999999999888875443 34445566555543 445676666666677777654 223334557
Q ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCC
Q 009700 242 PALAALQHLIFSSD----EEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 242 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~ 315 (528)
.++|.++..+..++ .....-++-.|..+.++.+ ...+.++.. ++|.+.++.-+ ++......+-.||..+...+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 88999999998775 5556666666666665533 233444443 77888887654 56667788888888887766
Q ss_pred cchhHHHhccCC------hHHHHHHhcccCchhHHHHHHHHHHHHh----cCCHHHHHHHHHcCcHHHHH-HHHccCChH
Q 009700 316 DTQTQCVIDNQG------LPRLYQLLTQNYKKSIKKEACWTISNIT----AGSRSQIQAVIEANIIAPLV-YLLQHAEFE 384 (528)
Q Consensus 316 ~~~~~~~~~~~~------l~~L~~lL~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~ 384 (528)
.++...-.+.+. +..+-++| +++.-..++..+|.+. .+-+......++. ++...+ ++-......
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLL----dp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLL----DPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHc----CCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 554433222222 23334444 3333344444444443 2222222222221 233333 333344677
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 385 VKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 385 v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
+-.....+++++...........+.
T Consensus 767 viQsLi~VfahL~~t~~~~~l~FL~ 791 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQLLNFLS 791 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 7788888888887754333334433
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.011 Score=49.41 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=103.6
Q ss_pred HHHHHHhCcHHHHHHHhcCCC------hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHH
Q 009700 277 IQAVIEAGVCPRLVELLLHSS------TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACW 349 (528)
Q Consensus 277 ~~~~~~~~~l~~L~~lL~~~~------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~ 349 (528)
...++..+++..|++++.++. ..+...++.++..+..+.. .....++..++..+...+.... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 356777889999999998755 3677788888888887643 2334566678888888887664 6889999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFL 408 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 408 (528)
.|-++...++...+.+-+.=-++.|+..|+..+.+++.+|...+..+...+++...+.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999887777666665655699999999999999999999999999888776665543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=66.69 Aligned_cols=187 Identities=19% Similarity=0.165 Sum_probs=131.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH-------------HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSC-------------RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
..++.+|+. +++-..++.++.-+..|++.. |+.+. ..++|.+++.+ ...+...+.+-..+|++
T Consensus 818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 445555554 455556777777776665533 23322 23577788877 45566677777888888
Q ss_pred hcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC---hhhHHH
Q 009700 228 FCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS---TTVLVP 303 (528)
Q Consensus 228 l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~ 303 (528)
+..+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++. ++|.++.+=.+++ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHHH
Confidence 877655432 23457889999999999999999999999988776655444443443 7787877766655 568999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
|+.+++.+.+..+...-......++..|.+.|.++ ...||++|..+=.+
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 99999999986655443445557888999999988 88899999876444
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0075 Score=57.81 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH-----HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC-----RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
.+...+.+..|+..|..-+-+.+..+..+++++....... .+.+..+ .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 4555688899999998888999999999999998554322 3333332 123333334344567777778888888
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcCCChhhHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a 304 (528)
.++..+-.........+-.+...+..++=++..+|..++..+..........++.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77764333333334555567778888899999999999998877666555555554 367788889999999999999
Q ss_pred HHHHhHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 305 LRTVGNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 305 l~~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+..||.+...... ...++-+..-+..++.+|.+. +..+|-+|..+.--+.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 9999999865433 234555667788999999998 99999999999988877
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.065 Score=51.51 Aligned_cols=203 Identities=12% Similarity=0.099 Sum_probs=142.3
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch-----hHHHhcc--CChHHHHHHhcccCchhHHHHHHHH
Q 009700 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ-----TQCVIDN--QGLPRLYQLLTQNYKKSIKKEACWT 350 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~ 350 (528)
+.+...+++..|+..|..-+.+.+..+..+++++....... .+.+... .++..|+.-.. ++++--.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 45666789999999999999999999999999998654322 2233321 23333333332 55666666666
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--CChHHHHhhcCCCChHH
Q 009700 351 ISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--GCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 351 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~ll~~~~~~~ 428 (528)
|..++. .+...+.++....+-.+.+.+..++.++...|..++..+......-...++..+ .++..+..+|.+++.-+
T Consensus 147 lRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 666654 566677888888999999999999999999999999998775433333444332 46778888999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
+.+++..|..++....... -....+.+..-+..+..|..+++..|+-.|..+..-|
T Consensus 226 krqslkLL~ellldr~n~~--------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFN--------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHH--------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHH--------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 9999999999997654322 2345566666678888889999999998888877644
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.016 Score=50.64 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCC-hHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGA-LMPLLAQ 208 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~Ll~l 208 (528)
+.++..++.+++.++...+...+ ..+|.+...|.++++.+|.+|+.+|..+...+. +.-.|. +..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999885544333 357899999999999999999999999975432 111233 3677788
Q ss_pred hccchhhHHHHHHHHHhhhhcCC
Q 009700 209 LNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 209 l~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+ .+++++++..|..++..+...
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHh
Confidence 8 888999999999999999877
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.055 Score=54.63 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=144.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIASGTSEHTRVVIEH 157 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 157 (528)
...++.+..+|+++|.|++-.. ....+.+.+.|..+.++..|+... +.++.+-..++|.-++..+++.+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567889999999999999874 445667778999999999998761 37899999999999998888888777764
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc--------c
Q 009700 158 -GAVPKFVQLLGS-----------------ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN--------E 211 (528)
Q Consensus 158 -g~i~~L~~lL~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~--------~ 211 (528)
+++..+...|.. .+......++.++.|+..+.+.... -.....++.++..+. .
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677777775531 1345677788899999866554322 012223444444432 1
Q ss_pred chhhHHHHHHHHHhhhhcCCCC------------CCChhhhHHHHHHHHHHhc----CC----CHHHHHHHHHHHHhhcc
Q 009700 212 HSKLSMLRNATWTLSNFCRGKP------------PAPFDQVRPALAALQHLIF----SS----DEEVLTDACWALSYLSD 271 (528)
Q Consensus 212 ~~~~~~~~~a~~~L~~l~~~~~------------~~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~ 271 (528)
.+......++..+|.|+--... ..........+..|+.+|. .. -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 2234567777777777721110 0000111233444444443 22 24677788888888887
Q ss_pred CChHHHHHHHHhC-----------------cHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 272 GTNDKIQAVIEAG-----------------VCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 272 ~~~~~~~~~~~~~-----------------~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
..... ...+... +-.+|+.++.+..+.++..+...+..+|..+
T Consensus 280 ~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 280 AAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 75433 3333332 3445666666665666666666666665433
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.57 Score=52.41 Aligned_cols=397 Identities=10% Similarity=0.042 Sum_probs=197.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..++..+..+-..+|-.|+++|..+......--....++.|+. .-+.++. ..|+..|+..++......++....
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence 56677777777789999999999999876321112333333333 2334444 799999999999888766665554
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.+ ..+..-+.++...+|..++.++..+|...|.+-...- +...++... .+....++..++.++.++-..++
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv-~DEEg~I~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTPV 963 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHh-ccchhHHHHHHHHHHHHHhccCC
Confidence 44 3344445567789999999999999998887543311 233334434 34444589999999999887762
Q ss_pred CC--ChhhhHHHHHHHHHH-------hcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcC------
Q 009700 234 PA--PFDQVRPALAALQHL-------IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLH------ 295 (528)
Q Consensus 234 ~~--~~~~~~~~l~~L~~l-------l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~------ 295 (528)
.. .......-++..+.. .....+.+....+..-... ......+.+..+ ..+..+.+++..
T Consensus 964 ~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~--~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~ 1041 (1692)
T KOG1020|consen 964 PEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK--TMKESVKPVALAKVTHVLNLLTHCLVEKISEVE 1041 (1692)
T ss_pred CcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh--hhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhh
Confidence 22 222222222221111 1112222222222211111 001111111111 122222222211
Q ss_pred -------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhc---CCHHH
Q 009700 296 -------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITA---GSRSQ 361 (528)
Q Consensus 296 -------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~ 361 (528)
.+.....+.+.+|..++...+. ++....+..|.+.|.+.. ...+-.+.+.++-...- ..++.
T Consensus 1042 ~~~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ses 1117 (1692)
T KOG1020|consen 1042 SDDMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSES 1117 (1692)
T ss_pred hHhhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHH
Confidence 1222344556666666655443 222234445556665431 22333333333333221 11111
Q ss_pred HHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC--CCHHHHHHHHHC--CChHHHHhhcCCC----ChHHHHHHH
Q 009700 362 IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG--GTREQIQFLVSQ--GCIKPLCDLLVCP----DPRIVTVCL 433 (528)
Q Consensus 362 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~--~~l~~L~~ll~~~----~~~~~~~~l 433 (528)
++ ..+=..|+.++-........+|..+++.++.. .+......+... +.++.+-.-.+.+ ........+
T Consensus 1118 ---fL-~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsi 1193 (1692)
T KOG1020|consen 1118 ---FL-ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSI 1193 (1692)
T ss_pred ---HH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Confidence 11 12334555555555556666777777777663 222222222210 1122211111111 112333456
Q ss_pred HHHHHHHHhhhhchhccCCcc-hhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 434 EGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 434 ~~l~~i~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+++-+.+++........... ..+...+ ..+.+..|..++.+.+.+++.+|..-+..++..
T Consensus 1194 ftlG~l~Ryfdf~~~~~~g~~~~~~~~~~-~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~ 1255 (1692)
T KOG1020|consen 1194 FTLGLLSRYFDFPKPSNDGKTFLQEGETL-KEKVLILLMYFSKDKDGELRRKALINLGFICIQ 1255 (1692)
T ss_pred HHHHHHHHhccCCCccCCCccchhhhhhH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 667666665443321111000 0112222 345566777777777888888888888766553
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.026 Score=49.32 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 255 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 255 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
|+.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..+....--.. ...++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 577899999999999987664444 267899999999999999999999999987543211 12234677888
Q ss_pred hcccCchhHHHHHHHHHHHHhcC
Q 009700 335 LTQNYKKSIKKEACWTISNITAG 357 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~ 357 (528)
+.++ ++.|+..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999764
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.041 Score=52.54 Aligned_cols=192 Identities=21% Similarity=0.213 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc--CChh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS--GTSE 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~--~~~~ 149 (528)
+...+..+.......|..|+..+.+++... ...+.+. ...+++.+...++.+. .+-+..|+.+++-++- |...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCc
Confidence 677788888778999999999999998763 2222222 2346788888888877 5666777776666654 2233
Q ss_pred hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhh---CCChhHHHHHHhcCChHHHHH--hhc---------cch
Q 009700 150 HTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVA---GDSPSCRDLVLSHGALMPLLA--QLN---------EHS 213 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~---~~~~~~~~~~~~~g~i~~Ll~--ll~---------~~~ 213 (528)
....+++ .+.|.|...+.. ..+.+|..|+.+|+-++ ...+.......+ .+..+.. ... ..+
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCC
Confidence 3444443 467888888876 34677778887777765 232222111111 2221111 111 112
Q ss_pred hhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 214 KLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 214 ~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
+..+...|+.+.+-|...-|... .......+|.|..+|.++|.+|+..|..+|.-+..
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35677777766666655433322 23457789999999999999999999988887654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0021 Score=49.41 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC
Q 009700 218 LRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS 297 (528)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 297 (528)
+..++++|...+..-+.........++|.++..+.++|..|+..||.+|.+++....+.+-..+. .+++.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~-~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN-EIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCc
Confidence 34566677766665544445566889999999999999999999999999999765433322222 48888999999999
Q ss_pred hhhHHHH
Q 009700 298 TTVLVPA 304 (528)
Q Consensus 298 ~~v~~~a 304 (528)
+.|+..|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9888766
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.086 Score=53.67 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH 249 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 249 (528)
.+...+..|+..|.....+-|...+. ++..++.++ .+.+..++..|...|..+|.+.+ ..+..+..+|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 56889999999999999999987766 678899999 78899999999999999998753 456788899999
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc---CCChhhHHHHHHHHhHh
Q 009700 250 LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---HSSTTVLVPALRTVGNI 311 (528)
Q Consensus 250 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~~l 311 (528)
+|.++++.....+-++|..+...++.. .+..+...+. ..++.+++.++..|..-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 999998877777777777776554422 2333333333 46777899988877543
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.075 Score=47.86 Aligned_cols=226 Identities=18% Similarity=0.240 Sum_probs=140.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..+.+....+........+..|.+.- ....+|.|+..|.+.+ .+.++.+|..+|+++.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 444444444443334444555554332 2446899999887644 47899999999999874 2
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH----HH---H-----HhcCChHHHHHhhccchhhHH-HH
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR----DL---V-----LSHGALMPLLAQLNEHSKLSM-LR 219 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~---~-----~~~g~i~~Ll~ll~~~~~~~~-~~ 219 (528)
..++.+-++.+.+-..+++.|..++..+--.+..-. .. + ...+-+..+-..|.+...+.+ +.
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 356777788877888899988888887631110000 00 0 011113333333323222222 33
Q ss_pred HHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CC
Q 009700 220 NATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SS 297 (528)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~ 297 (528)
.+.+.|.|+-. ...+..+..-+..+..-.+..+..+++.|-... .++.|.+.|.. .+
T Consensus 175 ~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~ 233 (289)
T KOG0567|consen 175 RAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEH 233 (289)
T ss_pred hhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcc
Confidence 45555555533 245666777777777778889999998876432 46677777755 56
Q ss_pred hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 298 TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 298 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
+-+|..|+.+||.++.. ..++.|.+.+.++ ++-|++.+..++..+-
T Consensus 234 pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~-~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 234 PMVRHEAAEALGAIADE-----------DCVEVLKEYLGDE-ERVVRESCEVALDMLE 279 (289)
T ss_pred hHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 78999999999987752 2355788888887 7878888777776653
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0057 Score=65.59 Aligned_cols=162 Identities=22% Similarity=0.214 Sum_probs=125.6
Q ss_pred cCcHHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC
Q 009700 114 AGVVPRFVEFLDRH---DLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~ 189 (528)
+.+.|.++..++.+ .+|++|..|.-+|+.+..-+.+.+.. .+|.|+..+. ++++.+|.+++-+++.++..-
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 34678888888542 24999999999999999877666544 4699999998 699999999999999999776
Q ss_pred hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009700 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYL 269 (528)
Q Consensus 190 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 269 (528)
|..-+. .-+.|...| .+.+..+++.|..+|++|... ....+.|.++-+..++.+++++|..-|=..+..|
T Consensus 993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 653332 456677777 888999999999999999865 3456689999999999999999988877777777
Q ss_pred ccCChHHHHHHHHhCcHHHHHHHhcCC
Q 009700 270 SDGTNDKIQAVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~L~~lL~~~ 296 (528)
+...+... +++|-++.-|.+.
T Consensus 1063 s~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccchh------hhchHHHHhhccC
Confidence 76543222 2566666666654
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.97 Score=52.43 Aligned_cols=401 Identities=18% Similarity=0.133 Sum_probs=215.1
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 74 IPSMVQGVLS--ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 74 l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+..+++.+.. ++..-+..+ ..|...+... ....+.+-..|+...|-.+-+.+++++.+..+...-..++. .+..+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa-~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVA-PRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHH-HHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence 5556666552 344444443 3443344332 23333333344444444444556656666655544444544 44443
Q ss_pred HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+- ...+-..++.|+. ++......++.+|..=..+.+..++.+-..+ +.-.++-|.+-++..+-+.+...|..=..
T Consensus 242 ~~~~-~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELK-PQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCC-hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 3333 3345555666655 5554555555555443345555555543333 44556666677777776666666554333
Q ss_pred CCCCCChhhhH-HHHHHHHHHhcCCCHHHHHHHHHHHH-hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVR-PALAALQHLIFSSDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~-~~l~~L~~ll~~~d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
+++........ ++-..|..+-+-+|..+...+..+|. .++. +++..+.+-..|+-..|-.+-+-++......+...|
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~-d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA-DPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc-CHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 34433333332 33333334444566666666666655 4444 343433333333333333344456666777777777
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHH
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 388 (528)
..-..+..+..+ -++...+..++.-|+.=++..++..++..|.--..++.+..+.+--.++...|-.+-+-+|..+...
T Consensus 399 A~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 399 AEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred HHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 666666666554 4455555555665554337778888877777766777777766655555555555556677778777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH-HHHHHhhhhchhccCCcchhhHHHhhhcccH
Q 009700 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL-ENILKIGEADKEAGSTTANVYSEMIDECDGL 467 (528)
Q Consensus 389 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l-~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 467 (528)
|+..|..=... +++.++.|--.++...|-.+-+.+|......++..| ..+. ... .....|...+..
T Consensus 478 aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~-----------~l~~~~~~~~~~ 544 (2710)
T PRK14707 478 TASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DEL-----------QLRKAFDAHQVV 544 (2710)
T ss_pred HHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cch-----------hhhhhhhhHHHH
Confidence 77777655443 345555555556666666666777765433333222 2222 111 123333344445
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 468 DKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 468 ~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..+..|..+++......+..-|...+-
T Consensus 545 ~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 545 NTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 666777777777777777666666554
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.037 Score=57.39 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=148.7
Q ss_pred hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 009700 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD-EEVLTDACWALSY 268 (528)
Q Consensus 190 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~ 268 (528)
..-+...+..|+...|+++. ....+..+.....+|. +.- + .........++.+.+.+++.. -.-...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~~i-~-f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--GKI-D-FPGERSYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--hhc-C-CCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 33455677788899999988 5555566666677776 111 1 111122344555555554332 1223457788889
Q ss_pred hccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc-CChHHHHHHhcccCchhHHHHH
Q 009700 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN-QGLPRLYQLLTQNYKKSIKKEA 347 (528)
Q Consensus 269 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a 347 (528)
|+..+....+.++....++.+-.++...++..+..++..+.||.-+..-....+.+. ..++.....+... +.....++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~ 647 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAG 647 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhc
Confidence 988777777778888777888888888999999999999999998776666666663 3455555555554 67777777
Q ss_pred HHHHHHHhcCCHHHHH-HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 009700 348 CWTISNITAGSRSQIQ-AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420 (528)
Q Consensus 348 ~~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 420 (528)
+.++..|+.-...++. ..-.......+..++.+++..++......+.|+.. ...+....+.+...+..+...
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHH
Confidence 7777767664444443 22234567788889999999999999999999444 445556665555555544443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.047 Score=49.46 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHH-hCcHHHHHHHh-------cCCC--h---hhHHHHHHHHhHhhcCCcchhHH
Q 009700 255 DEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELL-------LHSS--T---TVLVPALRTVGNIVTGDDTQTQC 321 (528)
Q Consensus 255 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL-------~~~~--~---~v~~~al~~L~~l~~~~~~~~~~ 321 (528)
+++.++.|+.-|+.--+..++..-.+-. .|.+..|++=+ ..++ . .-...|+..+-.++.+ ++....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 5566777766666554443322222211 25555444332 2221 1 2233455556666664 444557
Q ss_pred HhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 322 VIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
++++.+.-.|..+|+... -..+|-.++.+++.+.. ++++.+..+.+.+++|..++.|+.++.-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889999888899987552 24578888999999986 6788888899999999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHC--------CChHHHH-hhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 397 TSGGTREQIQFLVSQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 397 ~~~~~~~~~~~l~~~--------~~l~~L~-~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
... .....|+... .++..++ .+.+.+++.+.+.++.+..++.+..
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 873 4444444321 1233333 2345678888888888887776543
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0052 Score=47.21 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=57.2
Q ss_pred hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
++...+++|+|++..+......+.+.|+++.+++...-. .+|-+|+.|.|+|.|++.++++..+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456789999999999988888899999999999887533 27999999999999999999887765543
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.064 Score=51.26 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=114.8
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh--hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ChHHHH
Q 009700 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD--QVRPALAALQHLIFSSDEEVLTDACWALSYLSDG--TNDKIQ 278 (528)
Q Consensus 203 ~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~ 278 (528)
...+..+ .+.....+..++..+.++........+. ....+++.+.+.++.+..+-+..|+.++.-++-. ......
T Consensus 46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344444 4445778888888888887665332222 2356677888888877666666677766666543 223344
Q ss_pred HHHHhCcHHHHHHHhcCCC--hhhHHHHHHHHhHhhcC---CcchhHHHhccCChH--HHHHHhccc---------Cchh
Q 009700 279 AVIEAGVCPRLVELLLHSS--TTVLVPALRTVGNIVTG---DDTQTQCVIDNQGLP--RLYQLLTQN---------YKKS 342 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~--~L~~lL~~~---------~~~~ 342 (528)
.+++. +.+.|...+.+.. ..++..++.+|+-++.. ........++ .+. +....++.. .++.
T Consensus 125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccH
Confidence 55554 7788888887754 45566777788777542 2222221111 233 112222221 1245
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 343 IKKEACWTISNITAGS-RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+...|+.+-+-|...- ...+...++ ..+|.|..+|.+.+.+||..|..+|.-+..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777765555555432 323433333 469999999999999999999999887755
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=1.5 Score=51.03 Aligned_cols=357 Identities=15% Similarity=0.118 Sum_probs=207.0
Q ss_pred HHHHHHhhc-CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHH
Q 009700 117 VPRFVEFLD-RHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 117 i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
+..|++-++ .+++.+.+..+......++. .+..+..+ ....|..+++-++. +++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 444555553 34446777776666666666 33444333 33456666666665 4455555544444445544 4455
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHh-hhhcCCCCCCChhhh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTL-SNFCRGKPPAPFDQV-RPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
..+-..| +...++.|.+-++...-.++...| ..+..+ +.....+. ..+-..|..+-+-.+..+...+...|..=..
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 5544443 566667776777665544444444 445543 22222222 2333334444456677777776666654333
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
++++..+.+-..++-..|-.+-+-++..+...|..+|..-....+...+ -++...+..++.-|+.=++..+...|+..|
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 3443333322223333333333446666666666666665555555543 334445555666665433666777777777
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHH
Q 009700 352 SNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTV 431 (528)
Q Consensus 352 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~ 431 (528)
..=..++++..+.+-..|+-..|-.+-+-++..+...++.+|.--... +.+.++-|--.++...|-.+-+.+|..+...
T Consensus 399 A~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 399 AEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred HHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 665567787777776666666666666677888888888888766654 4666666666666777777778899888777
Q ss_pred HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009700 432 CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491 (528)
Q Consensus 432 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~ 491 (528)
+.+.|..=+....+ ++..|.-.+....|..|...++...+..|..-|..
T Consensus 478 aa~~La~~l~~~~~-----------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~ 526 (2710)
T PRK14707 478 TASALAARLAHERR-----------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAE 526 (2710)
T ss_pred HHHHHHHHhcccHH-----------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 77766555544332 34444445556778888888887776665444443
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.078 Score=55.10 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=154.7
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALG-NVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
.....+...++.|+...|+.+.....+.-+-....+|. .+...+.. ....++++.+.+..+....-....+.+
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 34555666788899999999988877777777777777 33222111 123566666666333322334567788
Q ss_pred hhhhcCCCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHH
Q 009700 225 LSNFCRGKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLV 302 (528)
Q Consensus 225 L~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~ 302 (528)
+.||+..+....... -...++.+-.++..+++..+..++..+.||.-.+.-....+.+. ..++....++.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 889887763332222 24445556666777889999999999999998766555555553 3455555555555566666
Q ss_pred HHHHHHhHhhcCCcchhH-HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC
Q 009700 303 PALRTVGNIVTGDDTQTQ-CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
.++.++..|+........ ..-.......+..++.++ +..++......+.|+.....+....+++...++.+...-.-.
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~ 724 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN 724 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 677777666554443332 233345778888899998 999999999999997766666666666766777666544333
Q ss_pred ChHHHHHHHHHH
Q 009700 382 EFEVKKEASWAI 393 (528)
Q Consensus 382 ~~~v~~~a~~aL 393 (528)
....+..+..+|
T Consensus 725 ~a~~~~~~~~~l 736 (748)
T KOG4151|consen 725 RAPKREDAAPCL 736 (748)
T ss_pred hhhhhhhhhhHH
Confidence 333444444443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.058 Score=58.29 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHhc----CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhc
Q 009700 239 QVRPALAALQHLIF----SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 239 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~ 313 (528)
.+..+.|.++...+ .+|++++..|.-+|+.+..-+.+ +++. -++.|+..+. ++++.++.++.-++|.++-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces-~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH-HHHHHHHHHhcCCCceeeecchheccchhh
Confidence 44567788888774 45799999999999998876543 3333 5788999887 7899999999999999987
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
..+...+ .+-+.|...|.+. ++.+|+.|..++++|...+.-. -.|.++.+..++.+++..++.-|-..+
T Consensus 991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 7665443 3445788888888 9999999999999998643222 258999999999999999999998777
Q ss_pred HHhcCCCC
Q 009700 394 SNATSGGT 401 (528)
Q Consensus 394 ~nl~~~~~ 401 (528)
..+...++
T Consensus 1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred HHhhhccc
Confidence 77776654
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.25 Score=47.26 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=108.2
Q ss_pred CcHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhH
Q 009700 115 GVVPRFV-EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD-SPSC 192 (528)
Q Consensus 115 g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~ 192 (528)
+++..|+ ..+++.+ +.+|..|+.||+-.+--+.+.... .++.+...+..+++.++..|+.++..+... +...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455554 6677877 899999999999999865544333 357778888778999999999999998732 2111
Q ss_pred HHHH-------HhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC----CCHHHHHH
Q 009700 193 RDLV-------LSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS----SDEEVLTD 261 (528)
Q Consensus 193 ~~~~-------~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~ 261 (528)
-+.. .....+..+...+ .+.+++++..++..++.|.-...... ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1123455566666 55588899999999999876652222 23344444333222 24556555
Q ss_pred HHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC
Q 009700 262 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 262 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 296 (528)
....+-..+..+..+. ..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence 5555666666655553 444445777777766553
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0048 Score=48.71 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=58.7
Q ss_pred CChHHHHhhc-CCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 412 GCIKPLCDLL-VCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490 (528)
Q Consensus 412 ~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~ 490 (528)
.++..|+.+| .+.|+.++.+++.=|..+++..+.+ ...+++.|+.+.+..|+.|+|++|+..|...+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-----------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-----------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-----------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-----------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3578888888 4568888999999999999988764 456789999999999999999999999998887
Q ss_pred Hhc
Q 009700 491 RYW 493 (528)
Q Consensus 491 ~~~ 493 (528)
++.
T Consensus 112 klm 114 (119)
T PF11698_consen 112 KLM 114 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.9 Score=46.41 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..+..|+..++..+...+-.++..+ ...--+++.....++.|..+...|..++.+......... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHH
Confidence 4567777777777665433333332 222245565555578899999999888885443111111 112222
Q ss_pred hCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch--------------------------hhHHHH
Q 009700 167 LGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS--------------------------KLSMLR 219 (528)
Q Consensus 167 L~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--------------------------~~~~~~ 219 (528)
+.. ..++....-+.+|..++.++.+. ...+.++.+.|...+...- +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 232 34444455666677777665544 2245566777777662111 112222
Q ss_pred HHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCcHHHHHHHhc
Q 009700 220 NATWTLSNFCRGK-PPAPFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 220 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
..+..+.++...+ .......+.+++..++.+. ++.++.....++..+-.+... +++... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 3333333333333 1122223333333333332 122222223333333222211 111111 1223333332
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-c
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-----YKKSIKKEACWTISNITAGSRSQIQAVIE-A 368 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~ 368 (528)
........+-.++.||+...-.+. .+..|..+|.++ .+..+.+-|...+..+..+.......-+. .
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 222567778888888886443322 345677777322 14556678888888887654222211121 2
Q ss_pred --CcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 369 --NIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 369 --~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
-++|.|...++.+++.+-.++...+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 278889999998888888888888888874
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.04 Score=57.49 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=145.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.+.+.+..+.++.+.++-.|+..++.++.. ......+...+++....+.|++.+ +-+-..|+..+..++.-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh-----
Confidence 3466777777777788999999999999875 345556667889999999999988 88889999988888763
Q ss_pred HHHHhcCChHHHHHh-hCC---CCHHHHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 152 RVVIEHGAVPKFVQL-LGS---ASDDVREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 152 ~~i~~~g~i~~L~~l-L~~---~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
....++|.+... .+. ..++.+-.+-.++.+++.. ++-+..... -.+..++... .+++...+..++..++
T Consensus 799 ---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gv-repd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 799 ---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGV-REPDHEFRASSLANLG 872 (982)
T ss_pred ---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhc-CCchHHHHHhHHHHHH
Confidence 334577888874 333 2245555556777777632 221111111 2455666667 5778888999999999
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcC-CChhhH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLH-SSTTVL 301 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-~~~~v~ 301 (528)
++|......-......++..++.+...+ ..-++..|...+..+..+.....-.+... +....+.+.... ++..++
T Consensus 873 ~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~k 952 (982)
T KOG4653|consen 873 QLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLK 952 (982)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 9997653333335566666677776654 46788888888888876544322222211 223334444433 344455
Q ss_pred HHHHHHHhHh
Q 009700 302 VPALRTVGNI 311 (528)
Q Consensus 302 ~~al~~L~~l 311 (528)
..|+.++-.+
T Consensus 953 lhaql~leei 962 (982)
T KOG4653|consen 953 LHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHH
Confidence 6665555433
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.12 Score=53.12 Aligned_cols=278 Identities=17% Similarity=0.127 Sum_probs=154.6
Q ss_pred cCcHHHHHHhhcCC-------CChHHHHHHHHHHHHHhc--CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009700 114 AGVVPRFVEFLDRH-------DLPQLQFEAAWALTNIAS--GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGN 184 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n 184 (528)
.|+++.++..|... +++.-.+.|++.+.++.+ .-+.....+.+.-+++.++..++++.--++..++..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 68899999999421 123445667777777765 333344445555567777778888888899999999999
Q ss_pred hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh----HHHHHHHHHHhcCCCHHHHH
Q 009700 185 VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV----RPALAALQHLIFSSDEEVLT 260 (528)
Q Consensus 185 l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~d~~v~~ 260 (528)
+..+ +++..+-..+.+...+++ ++.+-.++-.|+.++..+..+. ...... .+.++.|+.+-+.-+.++..
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 9544 333333334566677788 5577788888899998888775 112222 33333444443444555555
Q ss_pred HHHHHHH-hhccCChHHHHHHHHhCcHH----HHHHHhcCCC------hhhHHHHHHHHhHhh---cCCcchhH--HHhc
Q 009700 261 DACWALS-YLSDGTNDKIQAVIEAGVCP----RLVELLLHSS------TTVLVPALRTVGNIV---TGDDTQTQ--CVID 324 (528)
Q Consensus 261 ~a~~~l~-~l~~~~~~~~~~~~~~~~l~----~L~~lL~~~~------~~v~~~al~~L~~l~---~~~~~~~~--~~~~ 324 (528)
.+...+. +.+..-......+.. .++. ....++..++ ..-+..|.++|..+. -.-+.... .-+.
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le 639 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE 639 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5444332 333221111111111 1223 2233333321 122334444444332 22221111 1123
Q ss_pred cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCCh-HHHHHHHHHHHHhcCCCC
Q 009700 325 NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF-EVKKEASWAISNATSGGT 401 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~nl~~~~~ 401 (528)
....|.+--+|.+. -.++-.+|+..+-+.+-...+ +.. +.-|+.+.+.+++.+... ..-.++.-++.|+...|.
T Consensus 640 ~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 640 VSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 34566666666666 777888888888776532221 111 123456666666666653 667888999999987663
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.043 Score=55.81 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=109.0
Q ss_pred CcHHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 009700 115 GVVPRFVEFLDRH---DLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSP 190 (528)
Q Consensus 115 g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~ 190 (528)
..-|...+...+. +++++|..|.-+|..+..-+.+.+.. -+|.|+..+. +++|.+|..|+-.++.++..-.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 3455555655541 24999999999999988766555543 4699999887 6999999999999998874433
Q ss_pred hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 191 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
...+. .-..|.+.| .+.+..+++.|+.++..|.-.. ...+.|-++.+..+|.++|.++..-|-..+..++
T Consensus 967 ~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 967 TTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 22222 346677778 7888999999999999987543 2445788999999999999998887777777777
Q ss_pred cCCh
Q 009700 271 DGTN 274 (528)
Q Consensus 271 ~~~~ 274 (528)
..+.
T Consensus 1037 ~KdN 1040 (1128)
T COG5098 1037 KKDN 1040 (1128)
T ss_pred hccc
Confidence 6654
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.094 Score=43.90 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred HHHHHHhcCChHHHHHhhccchh-----hHHHHHHHHHhhhhcCCCCCCChhhh-HHHHHHHHHHhcCC--CHHHHHHHH
Q 009700 192 CRDLVLSHGALMPLLAQLNEHSK-----LSMLRNATWTLSNFCRGKPPAPFDQV-RPALAALQHLIFSS--DEEVLTDAC 263 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~--d~~v~~~a~ 263 (528)
+...++..+++..|++++.++.. .+....++.++..|..+. ...+... ..++..++..+... |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 34566778899999999965442 478888999999988874 2233332 55666666666543 689999999
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..|-+++.+++...+.+.+.=-++.|+..|+..++.++..|+..+..+....++
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999998887677776666789999999999999999999888888765544
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.14 Score=51.13 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=95.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH--hhccCChHHHHHHHHhCcHHHHHHH-hcCCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 246 ALQHLIFSSDEEVLTDACWALS--YLSDGTNDKIQAVIEAGVCPRLVEL-LLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 246 ~L~~ll~~~d~~v~~~a~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
.+..++.+.|+-++.....+++ +...++ .+++..+++. .++.+..++..|..+||-+|....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 5556677777777766665544 222222 2567777777 677888999999999998886543
Q ss_pred hccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 323 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
..+...+++|..++++.||...+.+|+-.|+++.... .+..|-.++.+...-||+.|+.+++-+...+++
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 3455677888777689999999999998888655433 345555667778888999999999988876654
Q ss_pred H
Q 009700 403 E 403 (528)
Q Consensus 403 ~ 403 (528)
+
T Consensus 655 ~ 655 (926)
T COG5116 655 E 655 (926)
T ss_pred c
Confidence 4
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.078 Score=55.41 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=134.5
Q ss_pred cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH
Q 009700 211 EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290 (528)
Q Consensus 211 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 290 (528)
.++...++.+++..|..+.+...........+++......+.+.|+-+--.|+..+..||+-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44556688899999999998765555666789999999999999999999999988888876543 3566666
Q ss_pred HH-hcC---CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 291 EL-LLH---SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 291 ~l-L~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
.. ... .....+...-.++++++..-.+......+ -++..++..+.++ +...|..++..++++|....-.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 322 11233333335555555433332211111 3455677777777 888899999999999863332222222
Q ss_pred HcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHH--HHCCChHHHHhhcCCCC-hHHHHHHHHHHHHHHH
Q 009700 367 EANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFL--VSQGCIKPLCDLLVCPD-PRIVTVCLEGLENILK 441 (528)
Q Consensus 367 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~ll~~~~-~~~~~~~l~~l~~i~~ 441 (528)
..++..++.+.. ++.+.+|+.|+..+..+..+...+....+ .-.+....+..+....+ ..+...+..++..+-.
T Consensus 887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 124444454444 45789999999999999886554433322 12234444444444433 3344444444444433
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.14 Score=45.55 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhc-CChhhHHHHHhcCCh
Q 009700 86 SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAV 160 (528)
Q Consensus 86 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i 160 (528)
+.-...|+..|..+++. .+....+.+..+=-.|..+|...+ ..-++..++.+++.+.. ++.+....+...+++
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 34556777777777776 566667777664444455554322 35689999999999998 455666677889999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhc-------CChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSH-------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-------g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
|..++.++.+++..+..|..++..|..++....-.+... -.+..++..+.+.++.-+..++..+..+|+.+
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987765432222111 12333343444666777888888888888866
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.28 Score=50.62 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=106.5
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH-hcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL-LTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
.+-+++.+.++-+|.....+++---.++.. .+++..|+.. .++. +.+||+.|.-+|+-++..+++++
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~~---- 590 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQL---- 590 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhccccccc-chHHHHHHHHHheeeEecChhhc----
Confidence 344556666776776665555432222211 2345566666 4455 89999999999999988777754
Q ss_pred HcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 367 EANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 367 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|..+.+|. +.++.||.-|+.||+-.+.+..... ++..|-.+......-++..++-++..|+.....
T Consensus 591 -----~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 591 -----PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred -----hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 45555565 4589999999999998887643221 244444555556666788888888877765433
Q ss_pred chhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009700 446 DKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~ 491 (528)
. .+|-... +...+..+....+++.-.+--.++.+
T Consensus 658 ~-------~~pkv~~-----frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 658 Q-------LCPKVNG-----FRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred c-------cCchHHH-----HHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 2 2222323 34667777777777776665555554
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0041 Score=49.11 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=61.2
Q ss_pred CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 326 QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 326 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..++.+|.+++++||.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3577899999554488899999999999999888888777788999999999999999999999999987754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.42 Score=51.06 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=119.3
Q ss_pred HHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHH--HHHHHHhcCCCH-H
Q 009700 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPAL--AALQHLIFSSDE-E 257 (528)
Q Consensus 181 ~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~d~-~ 257 (528)
+|+++....+.....+++.|++..+..++......++...++..+.+++...+..........+ ..+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 5667888888888889999999999999976778889999999999999775333222222222 233334444444 6
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHH-HHHHhc
Q 009700 258 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPR-LYQLLT 336 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~-L~~lL~ 336 (528)
....++..++.+....++....... +.+...-..++..+.... .....+ ..+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~---~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSE---IRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccc---eeehhh-hhcchhHHHHhc
Confidence 6666777777666554321111111 111222222222222211 111222 22223 566666
Q ss_pred ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHH
Q 009700 337 QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAIS 394 (528)
Q Consensus 337 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 394 (528)
.+..+..+..|.|++.+++..+++..+.+.+.|+++.+...-... ..+++.++...+.
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 555788999999999999998888887788889998887654332 4455555555443
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=40.66 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQG 412 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 412 (528)
.|.|.|+++++++ ++..+..+-+.++++.++++.... ...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 5789999999976 677777777789999999998754 68999999999999888 567766665544
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.79 Score=45.28 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=100.5
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChh
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTT 299 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~ 299 (528)
-...++.+...............+..+..-..+++..++..|++.|++.+...++........ .+..++.-|. ..+.+
T Consensus 237 d~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~ 315 (533)
T KOG2032|consen 237 DIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEE 315 (533)
T ss_pred HHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccH
Confidence 334444454443222233445555555555667788999999999999999866554444333 4555555444 45678
Q ss_pred hHHHHHHHHhHhhcCCc--chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc--C--CHHHHHHHHHcCcHHH
Q 009700 300 VLVPALRTVGNIVTGDD--TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA--G--SRSQIQAVIEANIIAP 373 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~--~~~~~~~l~~~~~i~~ 373 (528)
|...++.+|..+..... .....++ .+.-.+..+..+. ++++|..|..+++.++. + .....-.-+..+..|.
T Consensus 316 V~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 316 VQLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred HHHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccc
Confidence 88889888887765322 1111222 3455677888888 99999999999998875 2 1222211233344444
Q ss_pred HHHHHccCChHHHHHHHHHHHHhc
Q 009700 374 LVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
++ .+.++++.+- .||.+....+
T Consensus 393 ll-hl~d~~p~va-~ACr~~~~~c 414 (533)
T KOG2032|consen 393 LL-HLQDPNPYVA-RACRSELRTC 414 (533)
T ss_pred ee-eeCCCChHHH-HHHHHHHHhc
Confidence 43 3555555543 3444444433
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.24 Score=50.92 Aligned_cols=193 Identities=12% Similarity=0.155 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch
Q 009700 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 318 (528)
....++|.|++++...|..++...+.-+-..... .....++..+++.+...+.+.++.++..++.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4467899999999999999988766655554443 2345566779999999999999999999999999998643322
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc-HHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI-IAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.++...+..+..+-.+. +..+|-...-+++-++....... ..++ +..+.+.+.++-...|..+.+++....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 23333444554444444 78899888888888876432222 2333 345556677777888888888887665
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 398 SGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 398 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
..-+... +...+++.++.+.-+++..++..+..++...+...++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5322111 24457888888888888889999998888888776654
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.94 Score=48.75 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=119.0
Q ss_pred HhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 155 IEHGAVPKFVQLLGS-----ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
.+.|++..++.++.+ .........+..|...|. -+.+|+.+++.|+++.|+..+..- + .
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~---------l------~ 177 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRA---------L------Q 177 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHH---------H------h
Confidence 346889999988876 234555666666665554 467899999999999998887310 0 0
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc---cCChHHHHHHHHhCcHHHHHHHhc----CCChhhHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRLVELLL----HSSTTVLV 302 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~ 302 (528)
...+........+++.++-.++...+..-.....+. .... ....+ -+..|+..+. ..++.+..
T Consensus 178 ~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~-~~~~~~~~~~~~---------~v~~lL~~l~s~~~r~~~~i~~ 247 (802)
T PF13764_consen 178 ANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSS-SSLSGSEEQDKE---------QVEMLLERLNSPFVRSNPQILQ 247 (802)
T ss_pred CccccccchHHHHHHHHHHHHHHHHhhhhhhhcccc-ccccccccccHH---------HHHHHHHHhcCccccCCHHHHH
Confidence 000111112223333333333322111100000000 0000 11222 2333444443 35688899
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-c---hhHHHHHHHHHHHHhcC------CHHHHHHHHHcCcHH
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-K---KSIKKEACWTISNITAG------SRSQIQAVIEANIIA 372 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~---~~v~~~a~~~L~nl~~~------~~~~~~~l~~~~~i~ 372 (528)
..+++|..++.+.+...+.+++ .+.+.++-.. + ..--...+.+++.++.+ .....+.+++.|++.
T Consensus 248 ~l~RiLP~Lt~G~~e~m~~Lv~-----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~ 322 (802)
T PF13764_consen 248 ALARILPFLTYGNEEKMDALVE-----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQ 322 (802)
T ss_pred HHHHHhhHHhcCCHHHHHHHHH-----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHH
Confidence 9999999999999887777665 2233221110 1 00011224444555432 235567777999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
..++.|...-|.. ....+++...+ +....++.++.+|.
T Consensus 323 ~a~~YL~~~~P~~-----------~~~~s~eWk~~-l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 323 DAIDYLLKHFPSL-----------KNTDSPEWKEF-LSRPSLPYILRLLR 360 (802)
T ss_pred HHHHHHHHhCccc-----------ccCCCHHHHHH-hcCCcHHHHHHHHH
Confidence 9998887765554 11134555444 45566666666663
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.27 Score=48.05 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=114.5
Q ss_pred HHHHHHHHH-HHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 172 DDVREQAVW-ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 172 ~~i~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
.+-+..|+. +..-+|.++-...+.... .++..++..|.++.+...+..|+..|..+|+..+..-+....-++..++..
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 344555555 344444444433333222 245667777856578889999999999999997766555556667777777
Q ss_pred hcCCCHHHHHHHHHH-HHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChH
Q 009700 251 IFSSDEEVLTDACWA-LSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLP 329 (528)
Q Consensus 251 l~~~d~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 329 (528)
-.+.++++...|... +..++...+.. .+..+..++...+......++..+..++..-....-..+=..+.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 666666665555544 33444444422 344555566567777777888888888865443221222247899
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 330 RLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 330 ~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.+++...+. +..||+.|.++|..+..
T Consensus 452 ~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 999999998 99999999999988753
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.29 Score=43.67 Aligned_cols=142 Identities=11% Similarity=0.169 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN----YKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAP 373 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~ 373 (528)
.-...|+..+..++++.+. ...++++.+--.+..+|... ....+|-.++.+|+.+.. ++.+.+..+...+++|.
T Consensus 94 nRVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3345667667666665554 44677777766677777543 145689999999999986 67777888889999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--------CChH-HHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 374 LVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--------GCIK-PLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~-~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
.++.+..++...|.-|...+..+.... ....|+... -.+. .+..+.+.+++.+...++.+..++....
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999988742 233333221 1222 3334556688888888888887776543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.039 Score=52.73 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=83.4
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH-
Q 009700 331 LYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV- 409 (528)
Q Consensus 331 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~- 409 (528)
+.+.+.+. ++.+|+.|..++|-++--+.+... ..++.+...+..++..++..|+.++..+....+.+......
T Consensus 32 I~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 32 ILPAVQSS-DPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 34777888 899999999999998875553332 24677888887789999999999999987643333322222
Q ss_pred ------HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 410 ------SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 410 ------~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
...+++.+...+.+.+++++..+.+++.+++-.+.-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 245788899999999999999999999999986643
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.38 Score=43.98 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
.....|+.+|--++--++..+..+.+...+..++.+|.. ..+.++..++.+|..+..++|.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345667788888888899999999999999999999954 6789999999999999999999988999999999999999
Q ss_pred ccc-hhhHHHHHHHHHhhhhcCC
Q 009700 210 NEH-SKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 210 ~~~-~~~~~~~~a~~~L~~l~~~ 231 (528)
+.. .+.+++-.++..|.-+...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 533 3677877777777655544
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.043 Score=57.72 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH--------HHHh----cCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR--------VVIE----HGAVPKFVQLLGSASDDVREQAVWALGN 184 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~--------~i~~----~g~i~~L~~lL~~~~~~i~~~a~~~L~n 184 (528)
-..|+.+|+.+ ++-..++.++.-+..+++.... .+.+ ..++|.|++.........+..-+.+|.+
T Consensus 817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 45566666653 3445556666666654432211 1222 4588999998887667788888889999
Q ss_pred hhCCChhHHHHHHh--cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHH
Q 009700 185 VAGDSPSCRDLVLS--HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVL 259 (528)
Q Consensus 185 l~~~~~~~~~~~~~--~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~ 259 (528)
+...-|. +.+.. ...+|.|++.| .-+|..++..+..++.-+....+.........++|.++.+-.++| ..++
T Consensus 894 Vl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 8887764 22222 12355566666 778899999999999988877666666777889999998877665 6789
Q ss_pred HHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 260 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 260 ~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
..|+.++.-|.+. +..... -....++..|.+.|.++..-+|..|.++=++.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999999983 333333 23335889999999999999999998875544
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.077 Score=48.12 Aligned_cols=143 Identities=11% Similarity=0.129 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhc-CChhhHHHHHhcCChHH
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~ 162 (528)
-...|+..|..+++. ++....++++.+.-.|..+|+..+ ...++..++.+++.+.. ++++....+.+..++|.
T Consensus 66 RVcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 66 RVCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 445667777777775 677888889887777777776544 24688999999999998 45677778888999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHH-------HhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLV-------LSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~-------~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.++.++.++.-.+..|..++..|-.+.....-.+ .-..++..++..+...+++-+.++..++...|+.++
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999998899999999998876654322111 111235555555557778889999999999999873
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.3 Score=44.39 Aligned_cols=300 Identities=15% Similarity=0.119 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CChhHHHHHHhcCChH
Q 009700 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--------ASDDVREQAVWALGNVAG--DSPSCRDLVLSHGALM 203 (528)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~i~~~a~~~L~nl~~--~~~~~~~~~~~~g~i~ 203 (528)
..|+.++..+.+..++.+ + .|+++.+...|.. .++.-.+.|++.++++.. ..+.....+.+.-+++
T Consensus 388 laal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 388 LAALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred HHHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 345556665555333321 2 4889999998832 235566788888888764 2222223334444566
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA 283 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 283 (528)
.++..+ +++..-++..+|.+++.+..+ -+.......+.+....++.+++-.++..|+-|+..+..+.. .+..+..
T Consensus 464 hv~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sa 538 (970)
T COG5656 464 HVIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSA 538 (970)
T ss_pred HhhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHh
Confidence 666666 666777889999999999554 33444556778888888988888888888888887776542 2233333
Q ss_pred C---cHHHHHHHhcCCChhhHHHHHHH-HhHhhcCCcchhHHHhc---cCChHHHHHHhcccCc-----hhHHHHHHHHH
Q 009700 284 G---VCPRLVELLLHSSTTVLVPALRT-VGNIVTGDDTQTQCVID---NQGLPRLYQLLTQNYK-----KSIKKEACWTI 351 (528)
Q Consensus 284 ~---~l~~L~~lL~~~~~~v~~~al~~-L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~-----~~v~~~a~~~L 351 (528)
. .++.|+.+-+.-+-.+...++.. ++..+..-......+.. ..++.....++..+.+ .+=+..|...|
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL 618 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 2 33344444333333333333322 22222111111111111 1233344444433311 12234444555
Q ss_pred HHHhc------CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 009700 352 SNITA------GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD 425 (528)
Q Consensus 352 ~nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 425 (528)
..+.. ..+...+.+ .....|..-=++.+.-.+.-.+|+..+-+.+... .+ +.. +.=|+.+.+.+++....
T Consensus 619 ~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s-ke-I~p-imwgi~Ell~~~l~~~~ 694 (970)
T COG5656 619 RTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS-KE-IEP-IMWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HH-hhh-hhhHHHHHHHhcccccc
Confidence 54432 334433333 2335555555566777788888888887765521 11 111 12256777778887766
Q ss_pred h-HHHHHHHHHHHHHHHhhhhc
Q 009700 426 P-RIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 426 ~-~~~~~~l~~l~~i~~~~~~~ 446 (528)
. .-.+.+..++.+++..|...
T Consensus 695 t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 695 TAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCccc
Confidence 4 66677888999999888543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.072 Score=47.00 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=79.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC--------CChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH--------DLPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--------~~~~v~~~a~~~L~~l~ 144 (528)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+++|..- .+..++.+++.||..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456777787655432 5566666666653222367888889999999888631 23578999999999999
Q ss_pred cCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009700 145 SGTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVA 186 (528)
Q Consensus 145 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 186 (528)
. +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5565666665 689999999999999999999999999887
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.05 Score=46.27 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=99.6
Q ss_pred HHHHHHHhc--CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 286 CPRLVELLL--HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 286 l~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+..++..|. ...+.++..++-++..+.. ... .-...-+-+.+...+... +.+-...++.+++.+..+.++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~-~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAR-EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhH-HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 344555554 3567788888888888842 111 122223344566666666 667788899999999888888888
Q ss_pred HHH-HcCcHHHHHHHHc--cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChH-HHHHHHHHHHH
Q 009700 364 AVI-EANIIAPLVYLLQ--HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPR-IVTVCLEGLEN 438 (528)
Q Consensus 364 ~l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~-~~~~~l~~l~~ 438 (528)
.++ ..|+++.+..++. ..+..++..++.+|..-+. +...+.. +...+++.|..+++. ++.. ++..++-+|.+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 887 7899999999999 7788999999999987776 3344444 445679999999964 4454 55555555543
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.1 Score=46.28 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..+.+.+-.+++...+++..|+..+|..|..+.+...+. ...+-.++...+..-+.+..+.+|..|+.+|+.+=....+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 366777888888888999999999999999998754322 3333345778888888999999999999999998742221
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
- +..+...+..+++..++++||+.|+..|.+
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1 123566788888877799999987655543
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.5 Score=43.34 Aligned_cols=268 Identities=14% Similarity=0.095 Sum_probs=138.2
Q ss_pred cCChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChh-HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 157 HGAVPKFVQLL----GSASDDVREQAVWALGNVAGDSPS-CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 157 ~g~i~~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.|.+..++..+ .+++..++..|+..|+|.+...|. ++.. ..-.+..++.-|.++.+.++.-.++.+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 35555444443 347789999999999999988553 3222 1224666777776777888998888888877755
Q ss_pred CCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH-HHHh--CcHHHHHHHhcCCChhhHHHHHHH
Q 009700 232 KPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA-VIEA--GVCPRLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 232 ~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~-~~~~--~~l~~L~~lL~~~~~~v~~~al~~ 307 (528)
...... ....++.-.+..+..+.+++.+..+...++.|+.......+. +.+. +-...++-.+.++++.+. .||+.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHH
Confidence 322111 122334445667788899999999988888776432211111 1110 122334444555666543 45555
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHHH-HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIKK-EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
....+.-+-. .+.+. ++ +-+.+ .. +. ..+. ..-|+ ..+....++....+..+ ...++++.-+.+
T Consensus 410 ~~~~c~p~l~-rke~~--~~---~q~~l-d~-~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t~-----~~~~f~sswe~v 475 (533)
T KOG2032|consen 410 ELRTCYPNLV-RKELY--HL---FQESL-DT-DMARFQAFYNQWC-IQLNHIHPDILMLLLTE-----DQHIFSSSWEQV 475 (533)
T ss_pred HHHhcCchhH-HHHHH--HH---Hhhhh-HH-hHHHHHHHHHHHH-HHHhhhCHHHHHHHHHh-----chhheecchHHH
Confidence 5444432211 11110 11 11112 11 11 1111 11121 11222233333222221 122233333455
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~ 441 (528)
+..|...-.+....-.+..+.+.--.-+...+-.+...+-+++...+..++..+..
T Consensus 476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55555444555444344444443223345566666777888888888888877654
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.66 Score=45.48 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH-hhcCCcch
Q 009700 241 RPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN-IVTGDDTQ 318 (528)
Q Consensus 241 ~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~-l~~~~~~~ 318 (528)
..++..++..|.. .+..++.-|++.|..++.+.+.....-.+. .+..+++.-.+..+.+...|...... +++..+.+
T Consensus 328 ~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~-ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 328 AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI-AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 4566677777776 678889999999999998866443222222 45556666666666555555544333 34433332
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
. +..+..++... +...-..+...+..++.. ..+....++ .++.|.+++...+.+..||+.|.++|..+.
T Consensus 407 ~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 C--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred H--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2 22344444444 554555555566666653 333333333 469999999999999999999999998886
Q ss_pred C
Q 009700 398 S 398 (528)
Q Consensus 398 ~ 398 (528)
.
T Consensus 477 ~ 477 (516)
T KOG2956|consen 477 N 477 (516)
T ss_pred H
Confidence 5
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.13 Score=57.07 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=114.8
Q ss_pred HHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh
Q 009700 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298 (528)
Q Consensus 219 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 298 (528)
..+.|+...++...+. .....+++..++..+..+...++..|+.||+.+...++.. +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 3455555555544221 1223566777888888888999999999999999876632 2233444556666777888
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
.||..|+..+|..+...++.... ..+.+..-+.++ ...||+.+...+..+|...|..-. +.+ +...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHh
Confidence 99999999999988777664433 344677777777 889999999999999986665431 111 233333334
Q ss_pred ccCChHHHHHHHHHHHHhcCC
Q 009700 379 QHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 379 ~~~~~~v~~~a~~aL~nl~~~ 399 (528)
.+.+..|++-++.++.++...
T Consensus 941 ~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhcc
Confidence 455566999999999988753
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.014 Score=34.14 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.2
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
++|.+++++.+++++||..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.21 Score=45.68 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
....|+..|.-++--. ++....+-+...+..|+++|.....+.++..++.+|..+..+++.+...+.+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 4556778888777663 444556667889999999996555589999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHHhhCC
Q 009700 168 GS--ASDDVREQAVWALGNVAGD 188 (528)
Q Consensus 168 ~~--~~~~i~~~a~~~L~nl~~~ 188 (528)
++ .+.+++-.++..|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 87 4577888888877776543
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.1 Score=46.38 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=75.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+.-+++...+++..+++..+..|+.+... ...++..+-.++...+..-+.+.. |.++.+|+.+|+.+-....+.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC--
Confidence 356667777788999999999999988763 455666666777777777777777 899999999999998522111
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHH
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWAL 182 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L 182 (528)
+..++..+..+++. +++++|..|+..+
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 12356777888876 7899999865433
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.019 Score=33.56 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=25.8
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 4799999999998 9999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.46 Score=49.02 Aligned_cols=258 Identities=12% Similarity=0.098 Sum_probs=165.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
-.+++.+...+.+.+..-...|.+.+.. --+.++...++|.|+..+..++...-....+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence 3455556666666666655555553332 2345566778888888887655122222233333333331 22
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
++.+++|.|++++.+.+..+|-.-+.-+-+.... ..+.+++..+++.+...+ .+.+..++...+.++..|+.--..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 5567899999999999999998777666666543 233556667788888888 788999999999988888754211
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhC-cHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
. ......+..+.++-.+++..++....-+++.++....... ..+ ....+..-++++-..-+..++..+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2234555666665555667888888888888876633221 222 33445555677666778888777776555
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..+. .-+...+++.+..+.-++ +..+|..|..++...-.
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 4433 223446888888888888 88888888877776643
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.49 E-value=5 Score=45.52 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=94.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+++|.|..-|.+.+..+|..|...+|.+......+.. --........+.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 5888898889999999999999999999876654332 00113344455555566 889999999999998876666443
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
... +...+. ..+.|++++.....++..+.. ..-...+ ... ++..+.+-+....+.|+..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~--~~~~D~~~rir~~v~i~~~~v--~~~~l~~-~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALR--ERDLDEDVRVRTQVVIVACDV--MKFKLVY-IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHH--hhcCChhhhheeeEEEEEeeh--hHhhhhh-hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 222222 233344444433322222211 1111222 222 677777788888999999999999888874
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.17 Score=50.57 Aligned_cols=152 Identities=22% Similarity=0.349 Sum_probs=105.0
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcC
Q 009700 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL-LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHG 200 (528)
Q Consensus 122 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g 200 (528)
+++.+.+ +-++...+..++.--.++.. .|++..|+.. .+..+.++|..|+.+|+-+|.+.+.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 67777776666544333322 3577777776 6668899999999999999977664
Q ss_pred ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHH
Q 009700 201 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAV 280 (528)
Q Consensus 201 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 280 (528)
.+...+++|.++.+..++...+.+|.-.|.+... ..++..|-.++.....-|+..|+-+++-+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4666778886777889999999999998887522 3456677777888888899999999887764433222221
Q ss_pred HHhCcHHHHHHHhcCCC
Q 009700 281 IEAGVCPRLVELLLHSS 297 (528)
Q Consensus 281 ~~~~~l~~L~~lL~~~~ 297 (528)
+. ++...+.+.+.+..
T Consensus 660 v~-~I~k~f~~vI~~Kh 675 (926)
T COG5116 660 VK-RIIKKFNRVIVDKH 675 (926)
T ss_pred HH-HHHHHHHHHHhhhh
Confidence 11 36666777665543
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.17 Score=43.16 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=87.5
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+++.|.++|+.+.+..++.+++++++.|..-+|...+.+... .+.-. -............... ++....++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~ee--- 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSSEE--- 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCchHH---
Confidence 3578889999887668999999999999998777655533221 11000 0111122222222111 11111222
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.....++..|+..|++..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus 82 -~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 -YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222335778888885444444445666666666644434446777899999999999777777777776666553
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.1 Score=39.99 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=134.8
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----HHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhh
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS----CRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLS 226 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~ 226 (528)
..+.++|.++.++..+..-.-+-+..++.+..|+-...-. ..+.+.. -...+-.++.... .+++.-.+...|.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 3566789999999999888888888888888888633222 2222221 1222333332222 3566666666666
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCc----HHHHHHHhcCCChhhHH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLLHSSTTVLV 302 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~v~~ 302 (528)
...++..-......+..+......++.+.=++..+|..++..+.......+..++.... .+.--.++.+.+.-++.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 66655433333333555666666667777788889999888887665545555544432 33356678889999999
Q ss_pred HHHHHHhHhhcCCc---chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 303 PALRTVGNIVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 303 ~al~~L~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.++..+|.+.-+.+ ..++++....-+..++.+|..+ +..++-+|.....-..+
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 99999999975543 3445555567788999999998 89999999888877766
|
|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.5 Score=40.77 Aligned_cols=204 Identities=10% Similarity=0.049 Sum_probs=138.4
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh---hh---HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD---QV---RPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
..+...|.+..++..+ ..-+-+.+..++.+..++-+..-..... .. ..++..|+.--.. -+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3456778888899988 6777888889999999888765322211 11 2344444443111 2444333333333
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCC----hHHHHHHhcccCchhH
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG----LPRLYQLLTQNYKKSI 343 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v 343 (528)
... ........+..+.-+..+...+..+.-.+...|..+...+.+........++..+. .+..-.++.++ +.-.
T Consensus 151 Eci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 333 23334455666677888888888888899999999999988766655444544332 44466778888 9999
Q ss_pred HHHHHHHHHHHhcC--CH-HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 344 KKEACWTISNITAG--SR-SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 344 ~~~a~~~L~nl~~~--~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
++.+..+++.+.-+ +. ...+++....-+..++.+|..+...+|-+|.....-+..+.+
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999998753 33 333444445678899999999999999999999988887543
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.27 E-value=3.6 Score=43.30 Aligned_cols=275 Identities=11% Similarity=0.068 Sum_probs=135.3
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhH-HH
Q 009700 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE--HGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSC-RD 194 (528)
Q Consensus 119 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~-~~ 194 (528)
.++++|++.++.-++..++..+.-...+-.-..+.+.. ......+.+++.. +.-+.+...+..|+.+.....+. +.
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P 609 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAP 609 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 34455555543555666666666555532222222211 1233344445544 44566777777777776433221 11
Q ss_pred HHHhcCChHHHHHhhc-cc-hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHHHHHHHHHHhh
Q 009700 195 LVLSHGALMPLLAQLN-EH-SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVLTDACWALSYL 269 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~-~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~l~~l 269 (528)
... .+-.++..+- .+ ..+-++...+.+|.++...-.........-++|++-....-+. .-..+++...-...
T Consensus 610 ~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~ 686 (978)
T KOG1993|consen 610 YAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTT 686 (978)
T ss_pred HHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHH
Confidence 111 1222333332 22 2344566667788888765433333333444444443333222 22444443322222
Q ss_pred ccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHH
Q 009700 270 SDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACW 349 (528)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 349 (528)
..+.+.....+. +++|.+...+...... ...++.++....--.....-.-...|++..+..++.+- ..+-....+.
T Consensus 687 L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLk 762 (978)
T KOG1993|consen 687 LMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLK 762 (978)
T ss_pred HhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 222222222222 3677777777654433 33344444433321111111122346777777777665 4455556667
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCC
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~ 401 (528)
++..+...++ ........+++|.+...+-.+ .|-+-..-..+++.+....+
T Consensus 763 iveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~ 815 (978)
T KOG1993|consen 763 IVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNP 815 (978)
T ss_pred HHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcCh
Confidence 7777665444 455556678888887665333 46666677777777766543
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=43.13 Aligned_cols=146 Identities=17% Similarity=0.126 Sum_probs=96.6
Q ss_pred ChHHHHHHhcc-cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH
Q 009700 327 GLPRLYQLLTQ-NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405 (528)
Q Consensus 327 ~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 405 (528)
-++.++..|.. ...+.+|..+.-+++.+.. ...+. ...-+-+.+-..+..++.+-...+..++..+... .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 34556666654 3378899999999988852 22211 2222334444555555666778889999988885 56666
Q ss_pred HHHH-HCCChHHHHhhcC--CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHH-
Q 009700 406 QFLV-SQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNE- 480 (528)
Q Consensus 406 ~~l~-~~~~l~~L~~ll~--~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~- 480 (528)
..+. ..|+++.+..+.. +++..+...++++|..-+.... +..+....|++-|+.+. +++++.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~-------------~r~~I~~~~~~~L~~~~~~~~~~~~ 145 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS-------------CRTFISKNYVSWLKELYKNSKDDSE 145 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH-------------HHHCCHHHCHHHHHHHTTTCC-HH-
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH-------------HHHHHHHHHHHHHHHHHccccchHH
Confidence 6655 7799999999998 7888888888888765443322 33333566688888887 677676
Q ss_pred HHHHHHHHHH
Q 009700 481 IYEKAVKLLE 490 (528)
Q Consensus 481 v~~~a~~ii~ 490 (528)
++.+|.-.+-
T Consensus 146 ir~~A~v~L~ 155 (157)
T PF11701_consen 146 IRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7888776654
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=5.7 Score=42.88 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=63.8
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
.+|.+++-|.......+|....-+++.+|.+... ++ ...+|.+-..|.++++-||+.+...|.++...+--.+.-
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~-d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G 1043 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MT-DRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNG 1043 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HH-HHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcch
Confidence 3455555554443445555555555555543222 22 246888888889999999999999999988743111111
Q ss_pred HHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 407 FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
. =++.++..+++ .+++++.-+-.++..++...+
T Consensus 1044 ~----Lf~Rf~l~l~D-~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1044 E----LFIRFMLALLD-ANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred h----hHHHHHHHHcc-cCHHHHHHHHHHHHHHHhhcC
Confidence 1 12444444444 466777777777777776543
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.4 Score=49.20 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLY 332 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 332 (528)
+|++++..|.-+|..+..-+.+. +. .-+|.++..+. +++|.+|.+|.-.+|.++.......+.. -..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 68899999888888776544322 22 25788888887 7999999999999998876554433322 33677
Q ss_pred HHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 009700 333 QLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQG 412 (528)
Q Consensus 333 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 412 (528)
.-|.+. +..||+.+..++.++.-...-. -.|-.+.+..+|.+++..+...|-..+..++...+. +-+|
T Consensus 978 rrL~De-~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt------~yn~ 1045 (1128)
T COG5098 978 RRLGDE-DADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT------MYNG 1045 (1128)
T ss_pred HHhcch-hhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc------hhhh
Confidence 778887 9999999999999986432211 247789999999999999999999999999885432 2345
Q ss_pred ChHHHHhhcCC---CChHHHHHHHHHHHHHHHhh
Q 009700 413 CIKPLCDLLVC---PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 413 ~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~ 443 (528)
+++.+..+-.+ ++.+ -..++..|..++...
T Consensus 1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098 1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence 56555554422 2222 234555666666544
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.56 Score=50.44 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=130.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
+.+..-+.+++..-|..++..+..++.... -....-..|.+..++.....+.+..+...++.+|..++..-........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344445556778888888888888876544 1111112334555666666778888999999999988877654455556
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT- 319 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~- 319 (528)
...+|.++..+......++..+..++-.++.... -..+.+.+...+++.++.++..+...+.......+...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 7888899988888777777666666655444221 11367888899999999999999888888876655211
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..-.-.+.++.++....+. +..||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 1111125677777888777 89999999999988875
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.1 Score=48.35 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=131.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+.+-..+.+.+...+.+|+..+...++..+ -.......|.+-.+......+.+..+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 345556668899999999999999988642 111111245566666655544447888999999999998544432222
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC-
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP- 233 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~- 233 (528)
..+..|.++.-+......+++.+..++-.++...+. ....+.++..+ .+.++.++..+...+....+...
T Consensus 334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 236789999999888888999888888777653331 12456667777 78888888776666655554432
Q ss_pred -CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 234 -PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 234 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
.........++|.++....+.+.+|+..+..+++-+...
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 233445688899999999999999999999998877543
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.4 Score=41.77 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=103.9
Q ss_pred HHHHHHHHhHhhc---CCcchhHHHhc-cCChHHHHHHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 009700 301 LVPALRTVGNIVT---GDDTQTQCVID-NQGLPRLYQLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 301 ~~~al~~L~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 374 (528)
....++++..+.. +.......+++ ..++..|..++.+.. .+.+-..|+.+++.+....|.....+.+.|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 3445566666665 33344556777 677778888887763 46788889999999988888888888899999999
Q ss_pred HHHHc-cC---ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh-------HHHHHHHHHHHHHHHhh
Q 009700 375 VYLLQ-HA---EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP-------RIVTVCLEGLENILKIG 443 (528)
Q Consensus 375 ~~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-------~~~~~~l~~l~~i~~~~ 443 (528)
++.+. .+ ..++-...-.+|+.++. +....+.+.+.+.++.+++++.+++- ++....=.++..+++..
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 99988 43 45666666677777777 57888999999999999999876432 23333344556666665
Q ss_pred hhch
Q 009700 444 EADK 447 (528)
Q Consensus 444 ~~~~ 447 (528)
+..+
T Consensus 235 p~Lk 238 (379)
T PF06025_consen 235 PSLK 238 (379)
T ss_pred HHHH
Confidence 5543
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.11 Score=37.28 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcC
Q 009700 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHG 200 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g 200 (528)
...|+|+++++++ ++.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 4679999999998 66677777778999999998875 778999999999999986544 445544443
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.2 Score=41.90 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=60.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHH-HHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWA-LGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~-L~nl~~~~~~~~~ 194 (528)
+..+++-|.+.....+|..++--|+.-+. +++.+..+...|.+..+++.+.. ++..+...++.+ +.-++.+.+ .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 45556666644446889888888888887 89999999999999999999955 333244444344 444444443 333
Q ss_pred HHHhcCChHHHHHhhc
Q 009700 195 LVLSHGALMPLLAQLN 210 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~ 210 (528)
.+.+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3344455555566663
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.3 Score=43.56 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=126.2
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh-hhcCCCCCCCh
Q 009700 160 VPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS-NFCRGKPPAPF 237 (528)
Q Consensus 160 i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~ 237 (528)
+..++.-|.+ .+..+|..++--|+.-|.+ +.+|..+..+|....+++.+...++..+...++.++. -++++.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 5568899998888888875 4589999999999999999955554434444444444 44444443333
Q ss_pred hhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc---------CCChhhHHHHHHH
Q 009700 238 DQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HSSTTVLVPALRT 307 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~al~~ 307 (528)
.........+..++... ...+..... . ..........+ ..+..+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33455666667777611 000000000 0 00001111111 12222222221 1233445667777
Q ss_pred HhHhhcC--------------CcchhHHHhccCChHHHHHHhcc----cC------c-----hhHHHHHHHHHHHHhcCC
Q 009700 308 VGNIVTG--------------DDTQTQCVIDNQGLPRLYQLLTQ----NY------K-----KSIKKEACWTISNITAGS 358 (528)
Q Consensus 308 L~~l~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~ 358 (528)
+-.++.. .+...+.+...|+++.++.++.. .. . ...-..++++|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 7666411 11223445566788899888852 10 0 123345677777777655
Q ss_pred HHHHHHHHH--cCcHHHHHHH----HccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 359 RSQIQAVIE--ANIIAPLVYL----LQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 359 ~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
.+...+++. .+.++.+... ....-..+...++..+.|++.+. +..+..+.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~ 309 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFA 309 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhh
Confidence 544444443 3333333332 22223455678888899998864 34444443
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=3.6 Score=44.14 Aligned_cols=198 Identities=18% Similarity=0.203 Sum_probs=115.7
Q ss_pred HHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHh-ccCChHHHHHHhcccCchh
Q 009700 265 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVI-DNQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 265 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~ 342 (528)
++.++....++.-..+++.+++..+..++.. .+..+...++..+++++...+....... +.--...+..++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6778888888888999999999999999986 5677899999999999976543221111 1000123333444331335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH-HHhhc
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP-LCDLL 421 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~ll 421 (528)
.-..|+..++.+...++... ..+.-+ .+...-..++....... +.. .....+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~----~~~~r~-----------~~~~~l~e~i~~~~~~~----~~~-~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT----ECVFRN-----------SVNELLVEAISRWLTSE----IRV-INDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc----cccchH-----------HHHHHHHHHhhccCccc----eee-hhhhhcchhHHHHh
Confidence 66667777777665433211 111111 11111122222222211 111 11112222 44444
Q ss_pred C-CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhc
Q 009700 422 V-CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 422 ~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~ 493 (528)
. +..+..+.++++++.+++...++ ++..+.+.|++..+..+. .+...++...+..+++...
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 3 34566777889999988876543 577888999999999885 3336667777777776543
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.8 Score=45.08 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=97.4
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHhHhhcCC
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~~~~ 315 (528)
......++|.|...+++.+..+++.++..+..+++.-+ -.++..-++|++..+. .+.+..++..++-|++.++...
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998887654 2334445788887763 4577889999999999998433
Q ss_pred cchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHH
Q 009700 316 DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 387 (528)
+.. .+++ .+..+..-.+.. ++.+......+..++....+.. ..++...++|.++-+...+...+.+
T Consensus 461 D~~--~v~d--~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 461 DKA--AVLD--ELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHH--HhHH--HHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHH
Confidence 221 1221 233444445555 8888887777777776533332 3445567899998887766544433
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.34 Score=44.90 Aligned_cols=146 Identities=20% Similarity=0.217 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
.-.+...+..|.+.|++...+++..+..|+....+.....+.. ++-.++.-+++....+...|+.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777888999999999999999998877666666654 778888888999999999999999999876655443
Q ss_pred HHhccCChHHHH-HHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 321 CVIDNQGLPRLY-QLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 321 ~~~~~~~l~~L~-~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.. ++.++ .+|.... +.=++..|-.+|..+..+-..+ .+++.|+..+.+..+.++..++.++.++.
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 32 23333 3343321 3347888888888887542222 25677888888899999999988887776
Q ss_pred CC
Q 009700 398 SG 399 (528)
Q Consensus 398 ~~ 399 (528)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 54
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.6 Score=43.63 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=118.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Ch----hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASG-TS----EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP 190 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 190 (528)
.=|.|..-|+-.+ ..+|..|+..+.++--- ++ +..+.+++. -...|.++|.++.+.+|..|+.-++.+...
T Consensus 175 ~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~-- 250 (1005)
T KOG1949|consen 175 YKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK-- 250 (1005)
T ss_pred HhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH--
Confidence 3456667777777 89999999999997652 22 344555543 256788899999999999999888887643
Q ss_pred hHHHHHHhc---CChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 191 SCRDLVLSH---GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 191 ~~~~~~~~~---g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
+...+... ..+..+..-+..+...+++......|..+...+ ........++|.+-..|.++.+.|+..+...|.
T Consensus 251 -fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 251 -FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred -HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 22222111 122333333334455678888888888887663 233455677888888888888999999888887
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
.+-....-..-.++ -.+.++..|..++..+....+..+-+.+
T Consensus 328 ~ik~vra~~f~~I~---~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 328 KIKAVRAAKFWKIC---PMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHhhhhhhhhccc---cHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77544322211122 2345666666666555555555555544
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.89 E-value=4 Score=41.43 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=80.7
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
...+.+.+..+++.+.+.|..|+..+|..|..+++.-. .+...+-.+++..|.+-+-+..+.++..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 45567788888888889999999999999998887544 33445556788899999999999999999999998864332
Q ss_pred chhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 317 TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 317 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
.-.. .+...+..+++..++.+||+.|..-|
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 2111 12346777777766888998765443
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.2 Score=44.59 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=140.2
Q ss_pred hHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009700 108 IEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVA 186 (528)
Q Consensus 108 ~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~ 186 (528)
.+..++...+..|+.++.++| +.-|...-.+|.++-......+..+.. .+...+..++.. ....-...++.+++.+.
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 344566678899999999998 888998889999988755555555543 345666666654 34445566788888887
Q ss_pred CCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 009700 187 GDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWA 265 (528)
Q Consensus 187 ~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~ 265 (528)
.+-. ..++.-.. -....++.+.....-.........++..++..+|. ....++..+++.=-..+..-..-.+.-
T Consensus 204 ~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 204 NGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp TT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred hccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence 5422 12221100 01233445553333344455666666666655432 223334444443333444444444455
Q ss_pred HHhhccC-ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc---CChHHHHHHhccc---
Q 009700 266 LSYLSDG-TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN---QGLPRLYQLLTQN--- 338 (528)
Q Consensus 266 l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~--- 338 (528)
+..+... +++....+.. .++..+..++.+.+..|.+.|+..+.|= .... ++.. .+++.+...|...
T Consensus 279 l~~il~~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~~-li~~~~~~i~p~i~~~L~~~~~~ 351 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMV-PLFKRLAKCISSPHFQVAERALYFWNNE-----YFLS-LISQNSRVILPIIFPALYRNSKN 351 (409)
T ss_dssp HHHHHTT--HHHHHHHHH-HHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHHH-HHHCTHHHHHHHHHHHHSSTTSS
T ss_pred HHHHHHhcCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHHH-HHHhChHHHHHHHHHHHHHHHHH
Confidence 5555543 2333333333 3788899999999999999998776532 2121 2221 3566677666431
Q ss_pred C-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 339 Y-KKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 339 ~-~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
+ +..++..|+.++.-+..-++.....+
T Consensus 352 HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 352 HWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp -SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 1 57899999999999988777655443
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=4.5 Score=39.25 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=115.6
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCc-HHHHHHHHccC----C---------hHHHHHHHH
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIE-ANI-IAPLVYLLQHA----E---------FEVKKEASW 391 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~-i~~L~~ll~~~----~---------~~v~~~a~~ 391 (528)
+..+...|.+. ...+...++..+..++. ........++. -++ .+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 67788888888 77788899999999988 66666666664 222 34444444321 1 289999999
Q ss_pred HHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 392 AISNATSGGTREQIQFLV-SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
.+..+...+++.....++ ..+.+..+...+..++++++..+++.+..-+-..+...+. .-+..| ....+.+|
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~------~K~~~f-n~~~L~~l 209 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS------TKCKLF-NEWTLSQL 209 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh------hhhhhc-CHHHHHHH
Confidence 998888888887777766 4578999999999988999999999998644444333221 123333 44467888
Q ss_pred HHHhcCCCH----HHHHHHHHHHHHhcC
Q 009700 471 ENLQSHDNN----EIYEKAVKLLERYWV 494 (528)
Q Consensus 471 ~~L~~~~~~----~v~~~a~~ii~~~~~ 494 (528)
..|-...++ .+.+.+...+..+..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 888888878 999999999998876
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.68 E-value=5 Score=39.69 Aligned_cols=266 Identities=15% Similarity=0.062 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcC---ChHHHHHhhc-cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHG---ALMPLLAQLN-EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g---~i~~Ll~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 246 (528)
+..+..+|+.+|+.+..+..- ...+.+.. ++...+..+. ...+..+....+|+|+.=--............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i-~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEI-VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHH-HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 678999999999998755432 22211111 2334444442 334567778888887753322211122222333444
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc---hh---
Q 009700 247 LQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT---QT--- 319 (528)
Q Consensus 247 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~---~~--- 319 (528)
+..+-. -+...+....+.++.++....+.....-.. ..++.++..+-+....++..|..++..+...-+. ..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 444333 456778888999999998876654333322 2677888877777777777766555554322111 11
Q ss_pred HHHhcc----C-----ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 320 QCVIDN----Q-----GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 320 ~~~~~~----~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
....+. + +.+.+..++.+. +...-.--.|...-+.-+++. ..-..+ ...+...-.++.++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 111221 2 333466666663 333333334544443333321 111111 2244444456778899999999
Q ss_pred HHHHHHhcCC--CCHHHHHHHHHCCChHHHHhhcCCC-Ch----HHHHHHHHHHHHHHH
Q 009700 390 SWAISNATSG--GTREQIQFLVSQGCIKPLCDLLVCP-DP----RIVTVCLEGLENILK 441 (528)
Q Consensus 390 ~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~----~~~~~~l~~l~~i~~ 441 (528)
..+-..++.. .+.........- +..++...++.. .. .+...++..+++++-
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 7776666542 111111111111 234444445432 22 556667777777664
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.13 Score=47.42 Aligned_cols=147 Identities=12% Similarity=0.181 Sum_probs=99.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
.+...+..|.+.+|.....++..+..++....+.....+. .++-.+++-+++. ...|.+.||.+++.+.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999999998776653333332 3455566667777 8889999999999998754444433
Q ss_pred HHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
..+ +.+-.|..--...+.-|+..|-.+|..++....+.. +++.|...+...++.++..+..++.+....
T Consensus 167 ~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 167 ELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 222 222222222223356789999999999998766543 466777778888888877766665554443
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.8 Score=37.53 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=115.6
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh
Q 009700 160 VPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD 238 (528)
Q Consensus 160 i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 238 (528)
++.|+. +-+..+++.....+.+|..+|.....+... ++..+..+. +.++......+...+..+-...+. .+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r-~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKANDR-HF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCch-HH-
Confidence 344444 444578999999999999999776112222 234444444 444445444555555555544321 11
Q ss_pred hhHHHHHHHHHH--h------c--CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHH
Q 009700 239 QVRPALAALQHL--I------F--SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRT 307 (528)
Q Consensus 239 ~~~~~l~~L~~l--l------~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~ 307 (528)
+.+..++.. + . +...+.......++..+|...++. ...+++.+..+| .+.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 233322222 0 1 112445555566788888776652 224778888888 78888899999999
Q ss_pred HhHhhcCCcchhHHHhc-cCChHHHHHHhcccCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCcHHHHHHHHccCChH
Q 009700 308 VGNIVTGDDTQTQCVID-NQGLPRLYQLLTQNYKKSIKKEACWTISNITAG--SRSQIQAVIEANIIAPLVYLLQHAEFE 384 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~ 384 (528)
+..++... +++ ......+.+-|..+..+.+.+..|..+..+..+ +.+.. ......++..+.++..+.+.+
T Consensus 146 l~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhccccccc
Confidence 99999422 221 123344555555554677777666666655442 22222 223445777777777766643
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.99 Score=45.15 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh----h
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS----E 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~----~ 149 (528)
+..|+..+.|+|+..|......++.+... -......+...+...|.+++.......-....+++++.+..|.. +
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 67788888999999999888888888776 45566666667788888888765545667888899999988633 1
Q ss_pred hHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.-..+.. ..|+-+...+. .....+-..++..++..+|..... ++..+++.= ...+..-....+.-+..+
T Consensus 213 eh~~fl~----~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 213 EHKQFLR----KVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp HHHHHHH----HTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHH
Confidence 1222222 22333444432 344556666666666555543332 223333332 222222222333334444
Q ss_pred cCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh--CcHHHHHHHhcC-----CChhh
Q 009700 229 CRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLH-----SSTTV 300 (528)
Q Consensus 229 ~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~-----~~~~v 300 (528)
...-+... ......+...+..++.+.+-.|.+.|+..+.| +.....+.+. .+++.+...|.. -+..+
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44322222 22345677778888999999998888766543 1111111111 256666666543 35678
Q ss_pred HHHHHHHHhHhhcCCcc
Q 009700 301 LVPALRTVGNIVTGDDT 317 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~ 317 (528)
+..|..++..+...++.
T Consensus 358 r~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 358 RNLAQNVLKILMEMDPK 374 (409)
T ss_dssp HHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 88888888888776654
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.2 Score=37.20 Aligned_cols=202 Identities=19% Similarity=0.160 Sum_probs=116.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLV 196 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 196 (528)
+|.|+.-+....++..+...+..|..++......... ++..|..+...+....+..+.+.+..+....+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 5566664554445999999999999999844222222 34666666777777777777888888775554221
Q ss_pred HhcCChHHHHHhh---------ccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHH
Q 009700 197 LSHGALMPLLAQL---------NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLI-FSSDEEVLTDACWAL 266 (528)
Q Consensus 197 ~~~g~i~~Ll~ll---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l 266 (528)
+.+..++..+ ..+...+.......++..+|...|. .....++.+..++ .+.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444331 1122344555556788888888765 4466778888888 788888999999999
Q ss_pred HhhccCChHHHHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHhHhhcCCcc-hhHHHhccCChHHHHHHhccc
Q 009700 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTGDDT-QTQCVIDNQGLPRLYQLLTQN 338 (528)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~ 338 (528)
..++... .++ +. .....+..-|..+ .+.+....+..++.+..+.-+ .........++..+.++..+.
T Consensus 147 ~~Lc~~~--vvd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAE--VVD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHh--hcc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 9999432 111 11 1223333334332 344444444444433332211 111233345566666666555
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=5.9 Score=39.28 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=129.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCc--hhHHHHhcCcHHHHHHhhcCCC----ChH--HHHHHHHHHHHHhc
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCP--PIEEVIRAGVVPRFVEFLDRHD----LPQ--LQFEAAWALTNIAS 145 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~----~~~--v~~~a~~~L~~l~~ 145 (528)
...+...++..+.+.++.|+-...++....+-. +.+.+++.-+.+.+-++|.+.+ .|+ .+.-++.+|+-++.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 345566666777788999999999998875322 3455777777888888887643 233 34556667777777
Q ss_pred CChhhH--HHHHhcCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhH
Q 009700 146 GTSEHT--RVVIEHGAVPKFVQLLGS-ASD------DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLS 216 (528)
Q Consensus 146 ~~~~~~--~~i~~~g~i~~L~~lL~~-~~~------~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~ 216 (528)
.++-. ..++ +.||.|+.++.. .++ .+.+.+-.+|..+++..+. ...++..|+++.+.+.-. .++-.
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~-~~~~~ 167 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYE-LPDGS 167 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHh-CCCCc
Confidence 33322 2233 468999998865 223 3788899999999988664 455677899999887652 22211
Q ss_pred HH-HHHHHHhhhhcCC-C-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-------HHHHHHHHhCcH
Q 009700 217 ML-RNATWTLSNFCRG-K-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVC 286 (528)
Q Consensus 217 ~~-~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~~~l 286 (528)
.- .-++.++.-+... . -.........++..+..=+...+....-..|..|..+..... ...+...+ ...
T Consensus 168 ~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~-~l~ 246 (698)
T KOG2611|consen 168 HDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWAD-YLR 246 (698)
T ss_pred hhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHH-HHH
Confidence 11 1111111111111 0 011111112233444443444566667777777774432221 11001111 122
Q ss_pred HHHHHHhcCC-ChhhHHHHHHHHhHhhc
Q 009700 287 PRLVELLLHS-STTVLVPALRTVGNIVT 313 (528)
Q Consensus 287 ~~L~~lL~~~-~~~v~~~al~~L~~l~~ 313 (528)
.-+..+|++. .+.-+.+|+....++.+
T Consensus 247 ~G~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 247 TGVVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHHHhcccCchhcChHHHHHHHHHH
Confidence 3344555542 34456667666666653
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.8 Score=42.16 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC----hhhHHHHHHHHhHhhcCCcch
Q 009700 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS----TTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 243 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~ 318 (528)
....+...+.+++...+..+...+..++.+ ......++....+..|.+++.+.. ..+...++++++.+....-..
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 445567777777777777788888888765 446777888888999999998754 456677777777766443211
Q ss_pred hHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
- ..+...++.....+..-. .+..+-..|+..+-++..++....+.+.+.--+..|+..+...+..++..|...+..+.
T Consensus 163 W-~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 W-ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred e-eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1 111222333333333221 15667788888888888887777777777778999999999999999999888888888
Q ss_pred CCCCHHHHHHHH
Q 009700 398 SGGTREQIQFLV 409 (528)
Q Consensus 398 ~~~~~~~~~~l~ 409 (528)
..++++.+..+.
T Consensus 242 ~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 242 RKAPDDKRFEMA 253 (713)
T ss_pred hhCChHHHHHHH
Confidence 777665554443
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=93.96 E-value=8.9 Score=41.60 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=127.0
Q ss_pred hcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC----CCC----HHHHHHHHH
Q 009700 113 RAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG----SAS----DDVREQAVW 180 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~i~~~a~~ 180 (528)
+.|++..++.++.+-. ..++-...+..|...+. -+.+++.+++.|+++.|+..|. ... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4677888888887532 13444555566666555 7899999999999999998774 333 678888887
Q ss_pred HHHHhhCCChh--HHH--H-HH-------hcCChHHHHHhhccc---hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHH
Q 009700 181 ALGNVAGDSPS--CRD--L-VL-------SHGALMPLLAQLNEH---SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALA 245 (528)
Q Consensus 181 ~L~nl~~~~~~--~~~--~-~~-------~~g~i~~Ll~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 245 (528)
++..+..+... ... . .. ....+..+++.+... .++.+....+.+|..|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777643221 000 0 00 111256666666422 357889999999999998864433333333333
Q ss_pred HHHHHhc-----CCCHHHHHHHHHHHHhhccC----C--hHHHHHHHHhCcHHHHHHHhcCCCh----------------
Q 009700 246 ALQHLIF-----SSDEEVLTDACWALSYLSDG----T--NDKIQAVIEAGVCPRLVELLLHSST---------------- 298 (528)
Q Consensus 246 ~L~~ll~-----~~d~~v~~~a~~~l~~l~~~----~--~~~~~~~~~~~~l~~L~~lL~~~~~---------------- 298 (528)
.+ ++=. ..+..+. +.+++.++.+ . ....+.+++.|++...+..|...-+
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 32 2111 1122222 3344444332 2 3456778888999988888754221
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL 335 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 335 (528)
.-...+++.|.-++.+... ++..+..++++. +..|
T Consensus 350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~-lH~L 384 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPL-LHRL 384 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHH-HHHh
Confidence 1234478888888887654 334466666644 4444
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.89 E-value=4.6 Score=42.15 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=90.9
Q ss_pred hCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH
Q 009700 283 AGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362 (528)
Q Consensus 283 ~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 362 (528)
..+++.|...+++.+..++..++..+..++..-+. ..+..-+++.+..+.....+..++..++-+++-++. ..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence 35888888889999999999999999998876663 344556778887775544478899999999888862 22
Q ss_pred HHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 009700 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424 (528)
Q Consensus 363 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 424 (528)
+...-...++.+...+...++.+......+..++...... . ..+....+++.+..+...+
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS-G-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-c-eeeehhhhhhhhhhhhhcc
Confidence 2221123456666777778899888887777777653221 1 2334456677776665543
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=93.79 E-value=7 Score=37.94 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhHhhc-CCcchhHHHhcc-C-ChHHHHHHhcccC----c--------hhHHHHHHHH
Q 009700 286 CPRLVELLLHSSTTVLVPALRTVGNIVT-GDDTQTQCVIDN-Q-GLPRLYQLLTQNY----K--------KSIKKEACWT 350 (528)
Q Consensus 286 l~~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~----~--------~~v~~~a~~~ 350 (528)
+..+...|......+..++++.|..++. ........++.. + -.+.+..++.... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888999888899999999999998 444555555442 1 2344555553220 1 2788888766
Q ss_pred HHHHh-cCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC---CHHHHHHHHHCCChHHHHhhcCCCC
Q 009700 351 ISNIT-AGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGG---TREQIQFLVSQGCIKPLCDLLVCPD 425 (528)
Q Consensus 351 L~nl~-~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~l~~L~~ll~~~~ 425 (528)
+..+. .+++.....++ +.+.+..+.+-|...++++....+.+|..-+... ++...-.+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55555 46777777777 5667888999998988999999999998544322 1223333445567888888888777
Q ss_pred h----HHHHHHHHHHHHHHHh
Q 009700 426 P----RIVTVCLEGLENILKI 442 (528)
Q Consensus 426 ~----~~~~~~l~~l~~i~~~ 442 (528)
+ .+...+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 7788888888877753
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.5 Score=41.76 Aligned_cols=129 Identities=13% Similarity=0.185 Sum_probs=94.5
Q ss_pred hhHHHHh-cCcHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-C---CCHHHHHHHH
Q 009700 107 PIEEVIR-AGVVPRFVEFLDRHD--LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-S---ASDDVREQAV 179 (528)
Q Consensus 107 ~~~~~~~-~g~i~~Lv~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~i~~~a~ 179 (528)
..+.+++ ..+...|...+.+.. -+.+-..|+.++..+....|..-..+.+.|+++.+++.+. . ++.++....-
T Consensus 97 ~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP 176 (379)
T PF06025_consen 97 RLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLP 176 (379)
T ss_pred ccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHH
Confidence 3455666 566777777777654 3688999999999999988999999999999999999887 4 6678888888
Q ss_pred HHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhh------HHHHHHHHHhhhhcCCCCCCC
Q 009700 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKL------SMLRNATWTLSNFCRGKPPAP 236 (528)
Q Consensus 180 ~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~------~~~~~a~~~L~~l~~~~~~~~ 236 (528)
.+|+.||-+.. ..+.+.+.+.++.+++.+.+.... +........+-.|.++.|...
T Consensus 177 ~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk 238 (379)
T PF06025_consen 177 NVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLK 238 (379)
T ss_pred HHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHH
Confidence 89999997766 456777789999999988432211 233344444555666654433
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=6.9 Score=46.37 Aligned_cols=271 Identities=9% Similarity=0.066 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHhhCCC---hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDS---PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~---~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 246 (528)
++..++-.|+..|..++... ++....-....++.++...+....+.++++.++.++.++..........-...++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 45667777777777766321 111111122346777887776777889999999999988765432222222344444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHH-----HHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHhHhhcCC----c
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTGD----D 316 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~~l~~~~----~ 316 (528)
+.......++.+...+..++..+....-..+ ..+. .++..+..+.... +..+-..|+..|++++..- -
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 4444455678888888888877764321100 0111 2344444444333 3556667777777552110 0
Q ss_pred -----------------------chhHH-----HhccCChHHHH---HHhcccCchhHHHHHHHHHHHHhcC-----CHH
Q 009700 317 -----------------------TQTQC-----VIDNQGLPRLY---QLLTQNYKKSIKKEACWTISNITAG-----SRS 360 (528)
Q Consensus 317 -----------------------~~~~~-----~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~ 360 (528)
..... .....+++.|. .+..+. +++||..|+.+|-.+... +++
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 00000 00112333333 334555 899999999999887741 333
Q ss_pred HHHHHHHcCcHHHHHHHHccC-----------------------ChHHHHHHHHHHHHhcCCCC--HHHHHHHHHCCChH
Q 009700 361 QIQAVIEANIIAPLVYLLQHA-----------------------EFEVKKEASWAISNATSGGT--REQIQFLVSQGCIK 415 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~l~ 415 (528)
.-..++. +++.++++.+... +..+...+..+|.+++.--+ -+.+..+. .+++.
T Consensus 1386 ~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~~~l~ 1463 (1780)
T PLN03076 1386 LWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-KKVLM 1463 (1780)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3333333 4566666555321 01123333334444433111 11122222 25667
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 416 ~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.|..++..++..+......+|.+++.....
T Consensus 1464 ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1464 LLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 777777888888999999999999876543
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=6.9 Score=40.73 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=124.6
Q ss_pred HhhccchhhHHHHHHHHHhhhhcCCC-CCCChhhh----HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 207 AQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQV----RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 207 ~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~----~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
+-| +-.+..++.+|+..+.++.--. |....... ..-...|..+|.++-+.|+..|..-++.+...-=+.+..-+
T Consensus 181 R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 181 RGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred Hhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 344 6678899999999999887544 44433333 44456788999999999999887777665532111110000
Q ss_pred HhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH
Q 009700 282 EAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360 (528)
Q Consensus 282 ~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 360 (528)
-..++..+..-+.. ...++|......|..+........ +++ .+++.+-..|.+. ...||..+...|..|-.....
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHHhhhhh
Confidence 01233344443433 456788888888888876544332 222 3456666777777 889999999988888432222
Q ss_pred HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH------HHHHHHHHC--CChHHHHhhcCCCC
Q 009700 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR------EQIQFLVSQ--GCIKPLCDLLVCPD 425 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~------~~~~~l~~~--~~l~~L~~ll~~~~ 425 (528)
. +.+---...++..|...+..+.+..+..|.+.....+. +.+.+++.. .....+++++....
T Consensus 336 ~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~~l~~~~ 405 (1005)
T KOG1949|consen 336 K---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRFYQYLHEHT 405 (1005)
T ss_pred h---hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHHHHHhcccc
Confidence 2 22222345566667777777766666666666542221 223444433 23445556665433
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=8.3 Score=38.30 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=120.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hHHHHHHhcCChHHHHHhhcc------chhhHHHHHHHHHhhhhcCC
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSP---SCRDLVLSHGALMPLLAQLNE------HSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~Ll~ll~~------~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+..++...+++-+-.++.....++.... ..++.+.+.-+.+.+-+++.. .++.-.+.-+...|..+|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 345667777777777778888888774432 245566666566666666631 23445666778889999998
Q ss_pred CCCCChhhhHHHHHHHHHHhcCC-CH------HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhH-HH
Q 009700 232 KPPAPFDQVRPALAALQHLIFSS-DE------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVL-VP 303 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~-d~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~-~~ 303 (528)
+.-.....+-.-+|.|..++... |+ .+..++..+|..++.... ..+.++..|.++.+.++-.-++...- .-
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 75555556677889999888743 22 378888899998887744 55778888999999987655443332 23
Q ss_pred HHHHHhHhhcCCcch---hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 304 ALRTVGNIVTGDDTQ---TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 304 al~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
++.++--.+.+.+.- ...+.. ++..+..-+... +...+.+.|..|+.+..
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 333333333322211 111111 133333333444 66788899999997654
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=93.40 E-value=4.8 Score=35.36 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=93.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++...+.+..++..|+..+..++..+=-.|.. .+|.|+.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 678888888999999999999999887754223332 4899999999988 999999999999998855544433
Q ss_pred HHhcCChHHHHHh---hCCCCH-HH---HHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-------hhHHHH
Q 009700 154 VIEHGAVPKFVQL---LGSASD-DV---REQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-------KLSMLR 219 (528)
Q Consensus 154 i~~~g~i~~L~~l---L~~~~~-~i---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-------~~~~~~ 219 (528)
-...| +..-..+ +..+.. .. ....+..|..+...+...|.. ++..+++.+..+. ...-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHH
Confidence 33333 2222222 222111 11 556666777777766666666 3555666663221 334455
Q ss_pred HHHHHhhhhcCCC
Q 009700 220 NATWTLSNFCRGK 232 (528)
Q Consensus 220 ~a~~~L~~l~~~~ 232 (528)
..+++..||+.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 5666666666553
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=93.12 E-value=11 Score=39.90 Aligned_cols=135 Identities=20% Similarity=0.163 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCC----CHHHHHHHHHHHHhhcc----CChHHHHHHHHhCcHHHHHHHhc----CCChhhHHHHHHHHh
Q 009700 242 PALAALQHLIFSS----DEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLL----HSSTTVLVPALRTVG 309 (528)
Q Consensus 242 ~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~al~~L~ 309 (528)
..+..+..++.++ ...+...++-+++.+.. ..+.....+++ .+++.+...|. ..+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4556666666643 45566666666666643 22110011111 24555555443 345556777899999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhc-cc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLT-QN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEV 385 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v 385 (528)
|+.... .+..+..++. .. .+..+|..|+|+|..++...+..+ -+.|+.++.+. ++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence 987632 2334444444 21 156899999999999976555543 34455666544 6889
Q ss_pred HHHHHHHHHHh
Q 009700 386 KKEASWAISNA 396 (528)
Q Consensus 386 ~~~a~~aL~nl 396 (528)
|..|+.+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99888887654
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=93.10 E-value=7.5 Score=36.20 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=130.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-chhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
.|-..|.++++.+|..|+.+|+.+...-+.. .+...-+..|+..+.+ -.|......++.++..|...+ .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 4556788899999999999999988665531 1222224444444421 124445555566666666443 2222223
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcc
Q 009700 241 RPALAALQHLIF--SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 241 ~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..++..+.+-.. +.-...+..+...+..+..+..+....+ ..+++..+++.+.. .+|.-...+...+..+....+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 334444433222 2235677888888888877654333222 23577788888876 5777777777777777654441
Q ss_pred hhHHHhccCChHHHHHHhc--------ccC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 318 QTQCVIDNQGLPRLYQLLT--------QNY-KK--SIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
....+-+.+.+. .+. ++ -.+..-...|.++...++... .-.+|.|++-|.++.+.+|
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence 122223333331 111 22 234444455555555444432 3478999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 009700 387 KEASWAISNATSGGT 401 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~ 401 (528)
..++.+|..++..-+
T Consensus 226 ~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 226 LDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999988876433
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.92 Score=38.67 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=31.2
Q ss_pred CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 326 QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 326 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
.+++.|..+|+.+.+..+|+++..++|.|.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 45778889998876799999999999999886666554
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=9.7 Score=45.23 Aligned_cols=263 Identities=12% Similarity=0.052 Sum_probs=138.9
Q ss_pred CCCHHHHHHHHHHHHHHhcccC--CchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 009700 83 SENSGLQLEATTQFRKLLSIER--CPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAV 160 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 160 (528)
+.+..+...|+..|++++...- .+....-.+..++..|..++....+.+++...+.|+.++..... .-++.| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence 4466788889998988766431 11111123455788888888766668999999999999877222 223344 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhHHHHHHh--cCC----hHHHHHhhccchhhHHHHHHHHHhhhh--
Q 009700 161 PKFVQLL----GSASDDVREQAVWALGNVAGDSPSCRDLVLS--HGA----LMPLLAQLNEHSKLSMLRNATWTLSNF-- 228 (528)
Q Consensus 161 ~~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~----i~~Ll~ll~~~~~~~~~~~a~~~L~~l-- 228 (528)
+.+..++ ...++.+...|..++..|+.+.-. .+.. .+. +..+........+..+--.++..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 4444444 346788999999988888754211 0100 122 333333332222232222333333322
Q ss_pred --cCCC----------C-------------CC------ChhhhHHHHHH---HHHHhcCCCHHHHHHHHHHHHhhccC--
Q 009700 229 --CRGK----------P-------------PA------PFDQVRPALAA---LQHLIFSSDEEVLTDACWALSYLSDG-- 272 (528)
Q Consensus 229 --~~~~----------~-------------~~------~~~~~~~~l~~---L~~ll~~~d~~v~~~a~~~l~~l~~~-- 272 (528)
+... . .. .......-+|. |..+....+.+|+..|+.+|..+...
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 00 00001223343 44455567899999999999877643
Q ss_pred ---ChHHHHHHHHhCcHHHHHHHhcCC------------------C-h----hhHHHHHHHHhHhhcCCcchh---HHHh
Q 009700 273 ---TNDKIQAVIEAGVCPRLVELLLHS------------------S-T----TVLVPALRTVGNIVTGDDTQT---QCVI 323 (528)
Q Consensus 273 ---~~~~~~~~~~~~~l~~L~~lL~~~------------------~-~----~v~~~al~~L~~l~~~~~~~~---~~~~ 323 (528)
+++....++. +++-+++..+++. + . -+...+..+|..++.-..... ..++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444 3555555554321 0 0 022334444444443222222 2222
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+ +++..|...+..+ +..+-+.++.++.++..
T Consensus 1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 2 4555555666666 77788888888888875
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=92.92 E-value=3.3 Score=36.02 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcC-Chhh----HHHHH------hcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhc
Q 009700 132 LQFEAAWALTNIASG-TSEH----TRVVI------EHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSH 199 (528)
Q Consensus 132 v~~~a~~~L~~l~~~-~~~~----~~~i~------~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~ 199 (528)
+|..|+.+|..++.. ++.. -..++ ..+.-+.|+ -++.++++.+|..|+.++..+-.+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777663 1110 01111 112334444 45677899999999999999986654332222211
Q ss_pred C-------------------ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHHH
Q 009700 200 G-------------------ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEEV 258 (528)
Q Consensus 200 g-------------------~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v 258 (528)
. .-..|+..|....+..+...++.++..|....|... ......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 123344555556677888899999999998875433 3455677777788888999999
Q ss_pred HHHHHHHHHhhccC
Q 009700 259 LTDACWALSYLSDG 272 (528)
Q Consensus 259 ~~~a~~~l~~l~~~ 272 (528)
+..++.+++-+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999888877654
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=92.82 E-value=8.3 Score=37.95 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=88.2
Q ss_pred HHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc----cc-CchhHHHHHHHHHHH
Q 009700 280 VIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT----QN-YKKSIKKEACWTISN 353 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~-~~~~v~~~a~~~L~n 353 (528)
+.+.+-.+.+-.-+.. +..+-+..|+..+..++.........++ ...+..+|. ++ .+.+-+..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 3344455555555543 3355678888889888875544332222 223444443 22 166788899999999
Q ss_pred HhcCCHH------------HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 009700 354 ITAGSRS------------QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL 421 (528)
Q Consensus 354 l~~~~~~------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll 421 (528)
++..... .+..++...++|.|. --.+..+-++..|++.+..+-..-+++.... +++.++.+|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9863211 245566666778776 2234568899999999999988766554433 688999999
Q ss_pred CCCChHHHHHHHHH
Q 009700 422 VCPDPRIVTVCLEG 435 (528)
Q Consensus 422 ~~~~~~~~~~~l~~ 435 (528)
.+++.-+...|..+
T Consensus 356 ~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 356 QSSSYVVHTYAAIA 369 (370)
T ss_dssp TSS-HHHHHHHHHH
T ss_pred CCCCcchhhhhhhh
Confidence 99887776655544
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.54 Score=35.68 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=58.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
.+...+..+.++.+-+|-.|+..|++++... . ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 4677888888988999999999999999874 3 111222567888899999988 89999999999999985544
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=92.61 E-value=7.1 Score=41.73 Aligned_cols=196 Identities=17% Similarity=0.110 Sum_probs=108.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS----ASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
.+..+.+++.... --..+|++.|..+.......... .+..+..++.+ .++.++..|+.+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4566677776644 12233445555554422122222 24555556654 5678899999998888632111
Q ss_pred H---------HHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC---CH
Q 009700 192 C---------RDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS---DE 256 (528)
Q Consensus 192 ~---------~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~ 256 (528)
. .........++.+...+. ...+..-+..++.+|.|+... ..++.+..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1 111222335666666664 233557778889999999632 4577777777765 68
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
.++..|++++..+....++. +.+.++.++.+ .+.++|..|+.+|... .+.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 89999999999987766543 34667777765 4566888887665532 2221 134567777
Q ss_pred hcccCchhHHHH
Q 009700 335 LTQNYKKSIKKE 346 (528)
Q Consensus 335 L~~~~~~~v~~~ 346 (528)
+...++..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 766545555443
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.13 E-value=12 Score=38.26 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=77.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--Chhh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG--TSEH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~ 150 (528)
.+.-++..+.+.|..++..+++.|+.+... -..++...-.|++..|..-+-+.. +.++.+|+.+|+.+-.. ++++
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChHH
Confidence 466777788899999999999999877554 566777777888888888777776 89999999999998763 3332
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~ 189 (528)
+ ....|+.+++. ++.++|..| +.||..++
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 2 23466666765 778898875 45665444
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.2 Score=37.50 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHh----------------ccCChHHHHHHhccc-----CchhHHHHHHHHHHH
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVI----------------DNQGLPRLYQLLTQN-----YKKSIKKEACWTISN 353 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~n 353 (528)
+++......++..|+|++....... .++ ....+..|+..+..+ ....-....+.+++|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3444556667777888876443322 121 123566777777551 133455677889999
Q ss_pred HhcCCHHHHHHHHH--cCc--HHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 354 ITAGSRSQIQAVIE--ANI--IAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 354 l~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
++. .++.++.+++ .+. +..|+..+.+.+..-|.-++.+|.|++.. .+.-.++.
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL 141 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLL 141 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhc
Confidence 966 6788888884 334 77888888888777778889999999984 33334444
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor | Back alignment and domain information |
|---|
Probab=92.05 E-value=3.9 Score=43.72 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=110.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.|..|+..|.|.+..+...+-..+...+...+ .++ ++..||++.-+..+ ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDR-EPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccc-hHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 57889999999999888888888887776642 222 36677776544442 445666665533 2111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
..+..|-..+. .+..|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-
T Consensus 70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 12344445554 45788899999999998877777888899999999999988888889999999988887655
Q ss_pred CCCChhhhHHHHHHHHHHh
Q 009700 233 PPAPFDQVRPALAALQHLI 251 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll 251 (528)
|......+..++.+..+++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444455555656655
|
The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking []. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.1 Score=38.50 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=79.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc--cCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID--NQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSR 359 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~ 359 (528)
...++..+|.++++.-+..++..+...+..++.. .+.+ ..++..++.+|+.+..+.+++.++.++..|.. +.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 6778999999999989999999999888776432 2222 24678889999887567889999999998875 566
Q ss_pred HHHHHHHHc---CcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 360 SQIQAVIEA---NIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 360 ~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
+..+++... ++++.++.+++. ......++.+|..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 655555432 345555555554 46667777777777653
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=30 Score=40.66 Aligned_cols=274 Identities=16% Similarity=0.129 Sum_probs=144.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCChh
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFD 238 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 238 (528)
+..++..|..+++..+-.+..+++.++...+.. ..-.+..+.++..+.+..++-.+.--..++..+-+.. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445555666688888888899999888544321 1112245666777755556655555566666666554 233334
Q ss_pred hhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh---hhHHH-----------
Q 009700 239 QVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST---TVLVP----------- 303 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~v~~~----------- 303 (528)
.....+..+..+-+++ ++.|+..++.++..+.+.........+.. .+..+..+|-+..+ ++...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 4456677777777655 56999999999999987655444333332 33444444443221 11111
Q ss_pred --HHHHHhHhhcCCcc--hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc
Q 009700 304 --ALRTVGNIVTGDDT--QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379 (528)
Q Consensus 304 --al~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 379 (528)
...++|.=..++.. .+..+ ..-.+-...-++.++ ++.++.++..++-++--..+.... -.-+|+.|+.++.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 11222222222221 11111 111122223344555 888999999999888653333221 1225667777666
Q ss_pred cCChHHHHHHHHHHHHhcCCCCHHH---H--------------HHHH-HCCChHHHHhhcCC-CChHHHHHHHHHHHHHH
Q 009700 380 HAEFEVKKEASWAISNATSGGTREQ---I--------------QFLV-SQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL 440 (528)
Q Consensus 380 ~~~~~v~~~a~~aL~nl~~~~~~~~---~--------------~~l~-~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~ 440 (528)
+...-.|......+..+......+. . .+.. +.|+=-.+..+++. .|.+.++.+++.+.+++
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 6544343333333333322110000 0 0111 33444455555653 57778888888888866
Q ss_pred Hh
Q 009700 441 KI 442 (528)
Q Consensus 441 ~~ 442 (528)
..
T Consensus 1189 ~~ 1190 (2067)
T KOG1822|consen 1189 NS 1190 (2067)
T ss_pred HH
Confidence 53
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=92.01 E-value=3.3 Score=36.28 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHcCcHHHHHHHHcc---------CChHHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCCh
Q 009700 357 GSRSQIQAVIEANIIAPLVYLLQH---------AEFEVKKEASWAISNATSGGTREQIQFLVS-QGCIKPLCDLLVCPDP 426 (528)
Q Consensus 357 ~~~~~~~~l~~~~~i~~L~~ll~~---------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~ 426 (528)
.....++.+++.|++..|+.+|.. .+.....+++.+|..+.. +...+..++. .+++..|+..|.+++.
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n--~~~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN--TKYGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS--SHHHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc--cHHHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 456788889988999999988753 245788889999988887 4566666664 6899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009700 427 RIVTVCLEGLENIL 440 (528)
Q Consensus 427 ~~~~~~l~~l~~i~ 440 (528)
.++..+++.|..++
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987764
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=91.69 E-value=15 Score=36.27 Aligned_cols=215 Identities=13% Similarity=0.143 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-----CChhhHHHHHHHHhHhhcCCcc--------hhHHHh
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-----SSTTVLVPALRTVGNIVTGDDT--------QTQCVI 323 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~--------~~~~~~ 323 (528)
.++..+|..+...+...++....++.. ++..+..+|.. ....+...|+..|+.++..... ..+.++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~-fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPT-FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 455566666666555555555444443 56666666654 2234556677777776543211 112222
Q ss_pred ccCCh------------------HHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH-c--cCC
Q 009700 324 DNQGL------------------PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL-Q--HAE 382 (528)
Q Consensus 324 ~~~~l------------------~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~--~~~ 382 (528)
+.-++ +.+-.-+..+....-|..|+..+..++.........++. +.+..++.-. . +.+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCccc
Confidence 22111 122222222212456788999999998654444433332 1222222211 1 346
Q ss_pred hHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccC
Q 009700 383 FEVKKEASWAISNATSGGTRE-----------QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGS 451 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~~~-----------~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 451 (528)
++-+..|+..++.++..+... ....+....+++-|. --.+..|-++..|++.+..+-..-++.
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~----- 342 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE----- 342 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-----
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-----
Confidence 788889999999998765210 234444555666555 112344556666666665544433211
Q ss_pred CcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 452 TTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 452 ~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
.+ .+.+..+.....+++.-|+..|...|
T Consensus 343 ----~l------~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 ----QL------LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ----HH------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ----HH------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11 23467788888899999998887643
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=91.51 E-value=6.5 Score=42.01 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC----CChhhHHHHHHHHhHhhcCC
Q 009700 242 PALAALQHLIFSSDE--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH----SSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 242 ~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~al~~L~~l~~~~ 315 (528)
.++..+..++.+.+. ......++.+......+. . .++..+..++.. .++.++..|+-+++.++...
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 455666666665432 222223333333332222 1 144555555554 45667888888888887432
Q ss_pred cchh---------HHHhccCChHHHHHHhc----ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-
Q 009700 316 DTQT---------QCVIDNQGLPRLYQLLT----QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA- 381 (528)
Q Consensus 316 ~~~~---------~~~~~~~~l~~L~~lL~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~- 381 (528)
.... ...+...+++.+...|. .. +..-+..++.+|+|+.. + ..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKE 534 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcc
Confidence 2110 11222345666666665 23 55778888999999942 2 3566677766665
Q ss_pred --ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccCCcchhh
Q 009700 382 --EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGSTTANVY 457 (528)
Q Consensus 382 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~ 457 (528)
...+|..|++||..++...+... .+.|..++.+ .+++++..|+. -++...+.
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~~v---------~~~l~~I~~n~~e~~EvRiaA~~---~lm~~~P~------------ 590 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPEKV---------REILLPIFMNTTEDPEVRIAAYL---ILMRCNPS------------ 590 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HHHH---------HHHHHHHHH-TTS-HHHHHHHHH---HHHHT---------------
T ss_pred ccchHHHHHHHHHHHHHhhcCcHHH---------HHHHHHHhcCCCCChhHHHHHHH---HHHhcCCC------------
Confidence 68899999999999877543222 2334444433 56777766653 33443332
Q ss_pred HHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 458 SEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
...+. .....+...++..|.......|
T Consensus 591 ~~~l~-----~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 591 PSVLQ-----RIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHH-----HHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHhhCchHHHHHHHHHhc
Confidence 11121 1224445677788877665544
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.6 Score=41.40 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC---ChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD---LPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
...+.+.+.+++...+..|+..+..+... ...+.+++...++..|.+++.+++ ..++...++.++..+.....-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 46778888899998888888888877443 456788998888999999998876 2355566666666655422100
Q ss_pred HHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
-+ .+...++.....+..- .+..+-..|+..|-++...++..++.+.+.-.+..|+..+ +..+..++..|...+..+
T Consensus 163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 00 1111223333333322 4456778888999999888887888888888899999999 666777777777777777
Q ss_pred cCCCC
Q 009700 229 CRGKP 233 (528)
Q Consensus 229 ~~~~~ 233 (528)
....|
T Consensus 241 ~~~a~ 245 (713)
T KOG2999|consen 241 FRKAP 245 (713)
T ss_pred HhhCC
Confidence 66654
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=91.31 E-value=5.1 Score=34.81 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=88.9
Q ss_pred hHHHHHHHHhHhhcCCcchh-----HHHhcc-------CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQT-----QCVIDN-------QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~-----~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
+|..|+.+|..++...+... ..++.. .-...+.-++.++ ++++|..|+.++..+..+........-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 67778888888876632211 111111 2233344455666 9999999999999998876554433321
Q ss_pred cC-------------------cHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChH
Q 009700 368 AN-------------------IIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427 (528)
Q Consensus 368 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 427 (528)
.+ +-..|+..+..+ +..+....+.++..++.+.+....+.=.-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 223344444444 6777888899999988876544332101112455666677789999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 009700 428 IVTVCLEGLENILKIGE 444 (528)
Q Consensus 428 ~~~~~l~~l~~i~~~~~ 444 (528)
++..++.++..++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999888876543
|
|
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.22 E-value=10 Score=39.37 Aligned_cols=291 Identities=13% Similarity=0.120 Sum_probs=145.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..+=+.+.++++.++--|+-.+.-.-+.-.+ .+ .-++..|.+.+++++ ..++..|+.-|+-.-+++. ++.
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~n-e~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGsq--~e~ 487 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFN-EC-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGSQ--REE 487 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeecccccc-cc-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCCc--hHH
Confidence 45555566666666665555443322221111 11 123566777787777 7788888877776655432 233
Q ss_pred HHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 154 VIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+. ..|..++.+. ..++.-.|..+|+-+...+.. .. +...+++.++..-.........+-....|..+..+
T Consensus 488 V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~d-vts~ilqtlmekse~El~d~~~RFL~LGL~llflg 559 (878)
T KOG2005|consen 488 VL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--ED-VTSSILQTLMEKSETELEDQWFRFLALGLALLFLG 559 (878)
T ss_pred HH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hH-HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhc
Confidence 22 1444556553 356777777777777644321 01 11123444443321111223333333333333333
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHhcCCC---hhhHHHHHHH
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHSS---TTVLVPALRT 307 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~al~~ 307 (528)
... .+...+..+..-...+... +.++...|.. ...+.-. ++. ..+...-..+. ..-...|+--
T Consensus 560 kqe--------~~d~~~e~~~~i~~~~~~~-~~~lv~~caYaGTGnvl~-Iq~---q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 560 KQE--------SVDAVVETIKAIEGPIRKH-ESILVKSCAYAGTGNVLK-IQS---QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------hHHHHHHHHHHhhhHHHHH-HHHHHHHhhccccCceEE-ech---hhhhhhcCCCccchhhhccchhhh
Confidence 211 1111111111111122111 1222222211 1101000 000 11222222111 1122245555
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 387 (528)
++-++.+.+--.+. .+..+-.+|..+ ++.+|+..=-+++-++..+|.. +++..|-+.....+.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 55555555433332 345677788888 9999999999999998877753 4788898999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH
Q 009700 388 EASWAISNATSGGTREQIQF 407 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~ 407 (528)
+++.+++-+-.+.+...+..
T Consensus 694 naIfamGLiGAGTnNARla~ 713 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNARLAQ 713 (878)
T ss_pred HHHHHhccccCCcchHHHHH
Confidence 99999998887665554443
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=91.16 E-value=17 Score=35.98 Aligned_cols=306 Identities=15% Similarity=0.148 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCC-chhHHHHhcCcHHHHHHhhc----C------CCChHHHHHHHHHHHHHhcCChhhH
Q 009700 83 SENSGLQLEATTQFRKLLSIERC-PPIEEVIRAGVVPRFVEFLD----R------HDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~----~------~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.+...+..|-..|.+.+..... +....+.+ -++.|++.++ + +.+..+..+|+.+|+.+.. +++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence 34445555665556555554322 22222221 1344444332 1 1136788999999999987 55444
Q ss_pred HHHHhcC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---c-chhhHHHHHHH
Q 009700 152 RVVIEHG---AVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---E-HSKLSMLRNAT 222 (528)
Q Consensus 152 ~~i~~~g---~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~-~~~~~~~~~a~ 222 (528)
..+-..- .+...+..+.. .+..+....+|+|..-- .++ .+.....+..++..+. + -++..+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSP----KIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCC----cccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 4433221 34444555544 44567777777776532 222 2333334444444442 2 34567778888
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc--CCh-HHH---HHHHHh----C-----cHH
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD--GTN-DKI---QAVIEA----G-----VCP 287 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~~-~~~---~~~~~~----~-----~l~ 287 (528)
.++.+|....|..-......-+|.++..+-+....++..|...+..+.. .+. ... ....+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888775544333334456777766666666666665444433321 111 111 111111 1 344
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCHHHHHH
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSRSQIQA 364 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~ 364 (528)
.+..++...+.....+-+|..--..-+.......-.-...+...-..+.++ ++.+|.+|..+=..+.- .+......
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 466666663433343333333322222221110111123455555566777 88888888655444432 22222222
Q ss_pred HHHcCcHHHHHHHHccC-Ch----HHHHHHHHHHHHhcC
Q 009700 365 VIEANIIAPLVYLLQHA-EF----EVKKEASWAISNATS 398 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~ 398 (528)
.+.. +..++...+... .. .++..+...++++..
T Consensus 315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 2221 222333334333 23 566677777776654
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=91.15 E-value=1 Score=34.25 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=59.3
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
+...+..+.++ .+.+|..+...|..+..... ....--.+++..+...++++|+-|--+|+.+|+.++...+......
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 44566777888 88899999999999987544 1111124578888899999999999999999999998655444444
Q ss_pred HH
Q 009700 408 LV 409 (528)
Q Consensus 408 l~ 409 (528)
++
T Consensus 82 L~ 83 (92)
T PF10363_consen 82 LL 83 (92)
T ss_pred HH
Confidence 43
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.97 E-value=14 Score=39.42 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 234 PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
.........++|.++.+|..+..-+-.+|+.++-.+..
T Consensus 490 ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 490 QLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred cCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 34445567889999999999999999999999877654
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.95 E-value=25 Score=37.60 Aligned_cols=239 Identities=11% Similarity=0.156 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-----hhhH
Q 009700 240 VRPALAALQHLIFSSD-------------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-----TTVL 301 (528)
Q Consensus 240 ~~~~l~~L~~ll~~~d-------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~ 301 (528)
+...++.+.+++..++ .+++...|..+.-.+...++..+.++.. ++.....+|.+.. +...
T Consensus 232 m~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~-fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 232 MKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPD-FVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred HHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHHHHHHhcCCCccHHHHH
Confidence 3455666666665221 3456667777776666666666655443 5555566665532 3345
Q ss_pred HHHHHHHhHhhcCCcch--------h------------------HHHhccCChHHHHHHhcccCchh-HHHHHHHHHHHH
Q 009700 302 VPALRTVGNIVTGDDTQ--------T------------------QCVIDNQGLPRLYQLLTQNYKKS-IKKEACWTISNI 354 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~--------~------------------~~~~~~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl 354 (528)
..|+..|.+++...... . ..+.+.+-++.+-.-|..+ |.+ -|+.||..+.-+
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL 389 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGL 389 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHH
Confidence 56777777776532211 1 1223344566666666655 444 456778888889
Q ss_pred hcCCHHHHHHHHHcCcHHHHHH-HHc--cCChHHHHHHHHHHHHhcCCCCHHHH-----HHHHHCCChHH----HHhhcC
Q 009700 355 TAGSRSQIQAVIEANIIAPLVY-LLQ--HAEFEVKKEASWAISNATSGGTREQI-----QFLVSQGCIKP----LCDLLV 422 (528)
Q Consensus 355 ~~~~~~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~-----~~l~~~~~l~~----L~~ll~ 422 (528)
+......+..++.. .+..+++ ... +.++.-+..|.+.+..++..+..... ..++ ++... +..-|.
T Consensus 390 ~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lv--dv~~Ff~~~ilp~L~ 466 (960)
T KOG1992|consen 390 CKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELV--DVVDFFANQILPDLL 466 (960)
T ss_pred HHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccc--cHHHHHHHHhhHHhc
Confidence 87665555444432 2333333 222 23555666677777777654321100 0000 11111 111122
Q ss_pred C----CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 423 C----PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 423 ~----~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
+ ..|-+...++ .-+...-.... . +.. ...+..+......+..-|+..|...+++.+...+.
T Consensus 467 s~~vn~~pilka~aI---Ky~~~FR~ql~------~-~~l-----m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 467 SPNVNEFPILKADAI---KYIYTFRNQLG------K-EHL-----MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cCccccccchhhccc---ceeeeecccCC------h-HHH-----HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 2 1222222222 22221111100 0 011 12256677777888889999999999998886554
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.88 E-value=25 Score=37.47 Aligned_cols=318 Identities=14% Similarity=0.113 Sum_probs=163.6
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
...+++.++.+ |.-++..++++++-+..+. +-.-+.+. -..+...+..++..-..-+.+...+..++-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 56677777765 6678889999998777653 11111111 13334444555544322345566666666665533333
Q ss_pred HHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhC----CChhHHHHHHhcCChHHHHHhhccchh---hHHHHHH
Q 009700 151 TRVVIEHGAVPKFVQLLG--SASDDVREQAVWALGNVAG----DSPSCRDLVLSHGALMPLLAQLNEHSK---LSMLRNA 221 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~Ll~ll~~~~~---~~~~~~a 221 (528)
..... ..++..+-.+-+ .+.+-+|...+.+|.|+.. .++.+.. ++-+++++-.+..+ .-+.+.+
T Consensus 607 I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 607 IAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred hhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhH
Confidence 22111 112222222222 2556778888888888762 2222211 23334444322211 1233333
Q ss_pred HHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHH-HhhccCChHHHHHHHHhCcHHHHHHHhcCCChhh
Q 009700 222 TWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300 (528)
Q Consensus 222 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 300 (528)
...-..+.... ..-......++|.|...+....+.+ ..++.++ +++.-.++... .....|++..+..++.+-..+-
T Consensus 680 meLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dvr~eg 756 (978)
T KOG1993|consen 680 MELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDVRNEG 756 (978)
T ss_pred HHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHhhHHH
Confidence 32222222222 2222344567788887776543333 2233333 23333333322 2233478888999988866666
Q ss_pred HHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHH---
Q 009700 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIE-ANIIAPLV--- 375 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~--- 375 (528)
....+.++..+...++ ........++++.+..-+-.+ ..|.+-..-..+++.+.-.+++....++. ..-...++
T Consensus 757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence 7777888877776555 233445567777776655322 25666666777777777667776655553 22111222
Q ss_pred -----HHHcc-CChHHHHHHHHHHHHhcCCCCHH
Q 009700 376 -----YLLQH-AEFEVKKEASWAISNATSGGTRE 403 (528)
Q Consensus 376 -----~ll~~-~~~~v~~~a~~aL~nl~~~~~~~ 403 (528)
.+... .+++-|+--+-|+..+...+++.
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD 869 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence 11211 25666666666666666654443
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.9 Score=35.62 Aligned_cols=74 Identities=11% Similarity=-0.049 Sum_probs=61.4
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..+..-+.++++.++..|+..|-.++.++.......+.+.+++..|+.++.. .++.+...++..+.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455677778899999999999999999999888888888888999999999853 46788888888887766544
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.7 Score=38.39 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcC-ChhhHHHHHhcCChHH
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIASG-TSEHTRVVIEHGAVPK 162 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~ 162 (528)
-...|+..|.-+++. ++....+++..+--.|..+|...+ ..-++..++.+++.+... +.+....+....++|.
T Consensus 116 RvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 445566666666664 344444455443222334443222 345888999999999884 4555666777899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
+++.++.+++--+..++.+++.+..++...+
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 9999999998889999999999987775443
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=90.62 E-value=1.2 Score=39.06 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhHHHHHH---------------hcCChHHHHHhhcc-----chhhHHHHHHHHHhhhh
Q 009700 169 SASDDVREQAVWALGNVAGDSPSCRDLVL---------------SHGALMPLLAQLNE-----HSKLSMLRNATWTLSNF 228 (528)
Q Consensus 169 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~Ll~ll~~-----~~~~~~~~~a~~~L~~l 228 (528)
.+.......++..|+|++.....++..+- ....+..|+..+.+ .....-..+.+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34556777888899999876654443321 11245666666644 12355678889999999
Q ss_pred cCCCCCCChhhh--HH--HHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHH
Q 009700 229 CRGKPPAPFDQV--RP--ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDK 276 (528)
Q Consensus 229 ~~~~~~~~~~~~--~~--~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 276 (528)
++.+....+... .. .+..|+.++.+.+..-+.-++.+|.|+|-..+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 987533322221 22 3677888888887777778899999999765544
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.85 Score=40.86 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-HHHHHHhcCC
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGA-------VPKFVQLLGS-ASDDVREQAVWALGNVAGDSPS-CRDLVLSHGA 201 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~-------i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~ 201 (528)
.-|..|+.+|++++- .+.+.+.++..+- +..|+.+|.. .++..|+.|+-.|.++|..+.. +|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468999999999988 5566666665553 3455555554 7789999999999999966654 5566677889
Q ss_pred hHHHHHhhc
Q 009700 202 LMPLLAQLN 210 (528)
Q Consensus 202 i~~Ll~ll~ 210 (528)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999994
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.42 E-value=23 Score=36.28 Aligned_cols=259 Identities=13% Similarity=0.060 Sum_probs=134.2
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 78 VQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 78 ~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
-.++..+ ..+.|..++..+..++....... ... =..+.+.+..+..++.-..-+.+|..++.+..+. . ..+
T Consensus 34 ~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~--~~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~ 105 (464)
T PF11864_consen 34 KDLIDPNQPSEARRAALELLIACIKRQDSSS--GLM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFE 105 (464)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHcccccc--HHH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcc
Confidence 3344443 45678888888887776642201 011 1223333343322332223334444444432222 2 245
Q ss_pred cCChHHHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 157 HGAVPKFVQLLGSA---------------------------SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 157 ~g~i~~L~~lL~~~---------------------------~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
.++.|.|...|..- +.......+..+.|+...+...-+.-.-.+.+..++.+.
T Consensus 106 ~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC 185 (464)
T PF11864_consen 106 YEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTIC 185 (464)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 56777777766321 122333444455555543322111111123444455554
Q ss_pred ccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHH
Q 009700 210 NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 289 (528)
Q Consensus 210 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 289 (528)
....+......++.++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|
T Consensus 186 ~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L 255 (464)
T PF11864_consen 186 KSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTL 255 (464)
T ss_pred hccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHH
Confidence 34444444556666655554432 222333445555555553333 55566666788887654321 246677
Q ss_pred HHHhcC------CChhhHHHHHHHHhHhhcCCcchhHHHhc-c--CChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 290 VELLLH------SSTTVLVPALRTVGNIVTGDDTQTQCVID-N--QGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 290 ~~lL~~------~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
..+|.. .+..+..-|+..++.+..+.......-+. . -+++.+...++.. ++.+-.+.+..+.++.
T Consensus 256 ~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 256 CDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 777732 34556778999999888776332211222 1 2778888888877 7777778888888876
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=89.84 E-value=17 Score=33.88 Aligned_cols=223 Identities=13% Similarity=0.034 Sum_probs=124.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC--CCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR--HDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
|=..|.++|+..|..|+..|..++..-.... ....-+..|++++.+ .+ ......++..+..+.....-.....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3346789999999999999999988742111 111124444444432 23 3344444666666664221111110
Q ss_pred HhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhHHHHHH--hcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 155 IEHGAVPKFVQLLG--SASDDVREQAVWALGNVAGDSPSCRDLVL--SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 155 ~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..++..+.+-.. +.....|..+...|..+...... .+. ..+.+..++..+....|+.-...+...+..+..
T Consensus 79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~---~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE---ALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH---HHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 012233333221 23467788888888888755332 222 234677788888666788877777777777766
Q ss_pred CCCCCChhhhHHHHHHHHHHhc-----C-CCH-H-HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIF-----S-SDE-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~-----~-~d~-~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 302 (528)
..+. ..........+....- . +|+ . ..++.-.+|.......+.. ..-.+|.|++-|.++.+.++.
T Consensus 154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHH
Confidence 5432 2223333333332221 1 122 1 2223333333333333322 223789999999999999999
Q ss_pred HHHHHHhHhhcCCc
Q 009700 303 PALRTVGNIVTGDD 316 (528)
Q Consensus 303 ~al~~L~~l~~~~~ 316 (528)
.++.+|..++...+
T Consensus 227 D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 227 DSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999998886544
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.70 E-value=5.4 Score=48.23 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=140.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCC--chhHHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 009700 82 LSENSGLQLEATTQFRKLLSIERC--PPIEEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEH 157 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 157 (528)
...+++.+..+...++.++..... ....... ...++..+..+-....++.++......+. ........+.
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~ 564 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP 564 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence 355677777776666666554211 0000000 11223333332222222555444433332 1122223444
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+.+..+...+....-.+++.+...+++++..+|.+.-.-+....+..+-.+- .+.-.-+...+..-+..+....+.-..
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 5556666677777888999999999999987663321111111111111110 111111111111111111111111111
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~ 316 (528)
..+.+.+..++..+...+..+...+..+++.||....+.....++ ..++.+.+.+.. .+..-+..++++++++.....
T Consensus 644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 222344456666777777888888899999998766544555555 466666666654 455567889999999987655
Q ss_pred chhHHHhc-cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 317 TQTQCVID-NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 317 ~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
.......+ .-++..+...+.......++.++...++++....+
T Consensus 723 ~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 723 YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 42222221 24566677777666567788899888887765433
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=89.59 E-value=19 Score=38.10 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=91.6
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhHHHHHHhcCChHHHHHhhcc---chhhHHHHHHHHHhhh
Q 009700 159 AVPKFVQLLGS----ASDDVREQAVWALGNVAG----DSPSCRDLVLSHGALMPLLAQLNE---HSKLSMLRNATWTLSN 227 (528)
Q Consensus 159 ~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~Ll~ll~~---~~~~~~~~~a~~~L~~ 227 (528)
.+..+..++.+ ..+.++..|+-+++++.. +.+.+... +....++.+...|.. ..+..-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 34556666664 457788888988888762 22111111 112245556555532 2344455667778887
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhc-C--CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIF-S--SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLV 302 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~ 302 (528)
+... ..++.+..++. . .+..++..|+|+|..++...+.. +-+.++.++.+ .+.++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHH
Confidence 7643 34555555555 2 24689999999999887655433 33556666655 4567888
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHH
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 345 (528)
.|+..|... .+.. ..+..+...+...++..|+.
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence 777665432 1221 23456666776654455544
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=89.56 E-value=24 Score=35.70 Aligned_cols=265 Identities=13% Similarity=0.096 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC----CCCChhhhHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK----PPAPFDQVRPALA 245 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~ 245 (528)
+++-+-....+++..+-.+.......++.. .+..+....++..++..-.+...+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 456666666666666554443343333331 22222222223345555555555555554432 2222345578889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 246 ALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 246 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
.+...|+.+-.+..-++...++.+.+..+ ........ .+++.|+.-.-.....-.-...+.|..+....+... ..
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~-~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~~ 196 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYK-QLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---VA 196 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTG-GGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---cc
Confidence 99999998878888888888888876543 11111000 123333222111111222334556666655444322 22
Q ss_pred c----CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcC
Q 009700 325 N----QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATS 398 (528)
Q Consensus 325 ~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 398 (528)
. +++..+-+++.+. .. -.++...|..+....+. ..+..+. .++..++.-|++. ..+..+.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp -S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 2 3455555667665 22 24567777777654333 3333332 2555555555543 45555555556665554
Q ss_pred CCCHHHHHHHHH---CCChHHHHhhc-----C-CCChHHHHHHHHHHHHHHHhh
Q 009700 399 GGTREQIQFLVS---QGCIKPLCDLL-----V-CPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 399 ~~~~~~~~~l~~---~~~l~~L~~ll-----~-~~~~~~~~~~l~~l~~i~~~~ 443 (528)
..+++..-..++ .|+...+..-+ + -..+.-++.+.-++.+++...
T Consensus 273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 334444444343 24444443321 1 123333455556677777544
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.54 E-value=9.9 Score=40.74 Aligned_cols=311 Identities=15% Similarity=0.117 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh------c
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE------H 157 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~ 157 (528)
+|..+...++..+..++.. ......+++.|++..|+.. +..++..+....||..|.+ .......+.. .
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 3445566777777777765 4566677777777665554 3323344444556666665 3222222221 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-------c-----------hhhHHHH
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-------H-----------SKLSMLR 219 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-------~-----------~~~~~~~ 219 (528)
.++..-+.+|......-+.++...++..... -..-+.+-.+..+..|+.++.. + .+...-.
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 3444555566554444444444333322111 1122333444556666666621 1 1122334
Q ss_pred HHHHHhhhhcCCCCCCChhh------hHHHHHHHHHHhcCC------CHHHHHHHHHHHHhhccCCh-------HHHHHH
Q 009700 220 NATWTLSNFCRGKPPAPFDQ------VRPALAALQHLIFSS------DEEVLTDACWALSYLSDGTN-------DKIQAV 280 (528)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~~~------~~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~-------~~~~~~ 280 (528)
..|.+|....+..-...... ..+..+..++-+... ..+..+.++|-+-.+....+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 45555544332210000000 001111111111111 12334455555544443322 223445
Q ss_pred HHhCcHHHHHHHhcC-CC-------hhhHHHHHHHHhHhhcCCcchhHHHh-----c-c-CChHHHHHHhccc---Cchh
Q 009700 281 IEAGVCPRLVELLLH-SS-------TTVLVPALRTVGNIVTGDDTQTQCVI-----D-N-QGLPRLYQLLTQN---YKKS 342 (528)
Q Consensus 281 ~~~~~l~~L~~lL~~-~~-------~~v~~~al~~L~~l~~~~~~~~~~~~-----~-~-~~l~~L~~lL~~~---~~~~ 342 (528)
.+.+++..++.+... .+ ......|+.+|.-+..-.+-+.+..- + + .++..++..-... .+++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe 677 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE 677 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence 666777777777654 22 23455566666555554444332221 1 1 1333333322211 1788
Q ss_pred HHHHHHHHHHHHhcCCHHH-------------------------------HHH----HHHcCcHHHHHHHHccCC-----
Q 009700 343 IKKEACWTISNITAGSRSQ-------------------------------IQA----VIEANIIAPLVYLLQHAE----- 382 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~-------------------------------~~~----l~~~~~i~~L~~ll~~~~----- 382 (528)
+++.|+.+|.|+....|.. ... +...+.|..|+.+|+...
T Consensus 678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a 757 (1516)
T KOG1832|consen 678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA 757 (1516)
T ss_pred HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence 9999999999987533111 111 223678999999998764
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 009700 383 FEVKKEASWAISNATSGGT 401 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~ 401 (528)
..+|.-||.+|.-++...+
T Consensus 758 D~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHHhccccCcH
Confidence 3689999999999998543
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.7 Score=35.00 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=62.6
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.++++.++..|+..|-.++.+|.......+.+.+++..|..++.. .++.+...++..+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 456667778889999999999999999999988888888888999999999988 77888888888887765443
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.8 Score=37.04 Aligned_cols=139 Identities=11% Similarity=0.158 Sum_probs=88.0
Q ss_pred hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN----YKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L 374 (528)
-...|+..|..+++..+ ....++++.+--.+..+|... ....+|-.++.+|+.+.. +++..+..+....++|.+
T Consensus 116 RvcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34556666666666443 333566665544445555322 135688899999999987 577778888889999999
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--------CChHHHH-hhcCCCChHHHHHHHHHHHHHHH
Q 009700 375 VYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 375 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~~L~-~ll~~~~~~~~~~~l~~l~~i~~ 441 (528)
++++..++.--+.-|+..+..+..+ ....+|+.+. .++..++ ++.+.....+...++.+..++..
T Consensus 195 LrIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999999888888888888887763 3334443321 1122222 22344556666677666655543
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=88.41 E-value=16 Score=32.11 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=57.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.++.++++..+++ ..++..|+.++..+....--+- .-.+|.|+.+..++++.++..|...+..+....+.+-..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3667778777887 8999999999988877221111 126899999999999999999999999998777664443
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=88.31 E-value=22 Score=33.12 Aligned_cols=177 Identities=18% Similarity=0.134 Sum_probs=102.2
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-------ChhhHHHHHhcCChHHHHHhhCCCC----HHHHHHHHHHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASG-------TSEHTRVVIEHGAVPKFVQLLGSAS----DDVREQAVWALG 183 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~i~~~a~~~L~ 183 (528)
|+-+.+++-|.++. ....++..|..++.- +++.+-.+.=.+.+|.++.-++.+. ......++..|+
T Consensus 64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 44555555555544 345555666666552 1222222222356777877777765 244556778888
Q ss_pred HhhCCChhHHHHHHhcCChHHHHHhhccc---hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHH
Q 009700 184 NVAGDSPSCRDLVLSHGALMPLLAQLNEH---SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLT 260 (528)
Q Consensus 184 nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~ 260 (528)
.+|.... ...+..++....+. +..+....++..|..-.. |. .....+-.|..+|.++-+.++.
T Consensus 141 ~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHH
Confidence 8874321 12334444444222 234455555555544321 21 2245677788999888899999
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 261 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 261 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.++.+|..+...-+-... ...+++..+.+++..+.+ ..|+.+|-++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHHHh
Confidence 999999988765432211 444688899999987654 456666655544
|
|
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=88.21 E-value=4 Score=31.33 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=57.4
Q ss_pred HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 410 ~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
...++..|++.++.+++.....++..+..+++... -+..+.+.|+.+-+.++....++..+.....++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44578888888888888888889999999776643 366778899999999999999999998888887
Q ss_pred HH
Q 009700 490 ER 491 (528)
Q Consensus 490 ~~ 491 (528)
++
T Consensus 96 ~~ 97 (98)
T PF14726_consen 96 DQ 97 (98)
T ss_pred hc
Confidence 64
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=88.18 E-value=9.8 Score=32.62 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=72.6
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC--ChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG--AVPKFVQLLGS-ASDDVREQAVWALGNVA---GDS 189 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~-~~~~i~~~a~~~L~nl~---~~~ 189 (528)
.+..+..+|++.+ +.-+-.++..+...+..++ .+.+.+.| -+..+++.|+. +.+.+.+.++.+|..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4666788888887 7888888888777776321 34443433 57788888887 45778888998888886 444
Q ss_pred hhHHHHHHhcC---ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC
Q 009700 190 PSCRDLVLSHG---ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236 (528)
Q Consensus 190 ~~~~~~~~~~g---~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 236 (528)
|+....+.... ++..++.++.+ ......++.+|..+....|..-
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccc
Confidence 55433333222 23444444421 4566677777777776554433
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.10 E-value=47 Score=36.77 Aligned_cols=354 Identities=16% Similarity=0.145 Sum_probs=174.0
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 70 KLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
++-.+|.++-.+..-...+|..-+..+.--...-+.-+.+++ -.|+-+|+.+-...+....+.....+.+-+..
T Consensus 507 elytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL------lSLCvLLqqpIssalkhtIlsffvKLIsfDqq 580 (2799)
T KOG1788|consen 507 ELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL------LSLCVLLQQPISSALKHTILSFFVKLISFDQQ 580 (2799)
T ss_pred hccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH------HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHH
Confidence 334566666666655555555555444322222113333332 23566666655445555555666666665666
Q ss_pred hHHHHHhcCChHHHHHhhCC------C---------------CH--------------------------HHHH------
Q 009700 150 HTRVVIEHGAVPKFVQLLGS------A---------------SD--------------------------DVRE------ 176 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~------~---------------~~--------------------------~i~~------ 176 (528)
.++.+.+-|++..|...|+. + ++ .+.+
T Consensus 581 yKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltit 660 (2799)
T KOG1788|consen 581 YKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTIT 660 (2799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhh
Confidence 67777777888777765542 0 00 0000
Q ss_pred HHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC--
Q 009700 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS-- 254 (528)
Q Consensus 177 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-- 254 (528)
....+|..+.....++...+.+..++..++..+- +.+.+...+..++.|....|.... ..-+-.++..|++.
T Consensus 661 vgwDcLisllKnnteNqklFreanGvklilpfli---ndehRSslLrivscLitvdpkqvh---hqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 661 VGWDCLISLLKNNTENQKLFREANGVKLILPFLI---NDEHRSSLLRIVSCLITVDPKQVH---HQELMALVDTLKSGMV 734 (2799)
T ss_pred chHHHHHHHHhccchhhHHHHhhcCceEEEEeee---chHHHHHHHHHHHHHhccCccccc---HHHHHHHHHHHHhcce
Confidence 0112333333444444455555555444444441 334555666777777665543211 22333444444431
Q ss_pred ------C----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--------C--ChhhHHHHHHHHhHh---
Q 009700 255 ------D----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--------S--STTVLVPALRTVGNI--- 311 (528)
Q Consensus 255 ------d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------~--~~~v~~~al~~L~~l--- 311 (528)
+ .....+.+.++..+...+......+-+++++..|...|.. + +..+...-..+|-.+
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 1 2345555666666654444344445556666666655532 1 111111111221111
Q ss_pred -hcCCcchh-------------HHHhccC---------ChHHHH----HHhcccCchhHHHHHHHHHHHHh----c----
Q 009700 312 -VTGDDTQT-------------QCVIDNQ---------GLPRLY----QLLTQNYKKSIKKEACWTISNIT----A---- 356 (528)
Q Consensus 312 -~~~~~~~~-------------~~~~~~~---------~l~~L~----~lL~~~~~~~v~~~a~~~L~nl~----~---- 356 (528)
...++... ..+...| .+..+. +.+.++ .-.--..||..+-.+- +
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvpp-fLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPP-FLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCc-hhhhhHHHHHHHhhcccceeeeccC
Confidence 11122111 1111222 111111 112222 2122223343333221 1
Q ss_pred -C-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CChHHHHH
Q 009700 357 -G-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC---PDPRIVTV 431 (528)
Q Consensus 357 -~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~ 431 (528)
+ .....+.+...|++..+++.+-...++.+.+-...+..++... +.....+...|+++.|.+.+.. +.......
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRas-pfnaelltS~gcvellleIiypflsgsspfLsh 972 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS-PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSH 972 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC-CCchhhhhcccHHHHHHHHhhhhhcCCchHhhc
Confidence 1 1122456778999999999988888899999999998888764 4555555677888887776642 33344444
Q ss_pred HHHHHH
Q 009700 432 CLEGLE 437 (528)
Q Consensus 432 ~l~~l~ 437 (528)
++.++.
T Consensus 973 alkIve 978 (2799)
T KOG1788|consen 973 ALKIVE 978 (2799)
T ss_pred cHHHHH
Confidence 554443
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=87.93 E-value=2.1 Score=35.61 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+++++.++..|+..|..+...-+......+...+++..|+.++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999888875455566777888999999999754458899999988888775
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=19 Score=40.76 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009700 427 RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491 (528)
Q Consensus 427 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~ 491 (528)
+.....+.+|..++...-+.-. ..|.+....++ .++-+..+..+.++++.-.|...+.+
T Consensus 1071 et~~ltisgIaklf~e~fk~ll----nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSENFKLLL----NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQE 1129 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH----hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHH
Confidence 4455566677766654322211 02334443332 24556666778888887777665554
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=87.78 E-value=23 Score=35.80 Aligned_cols=220 Identities=10% Similarity=0.082 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHhhC----CChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC-CCChhhhHHHH
Q 009700 170 ASDDVREQAVWALGNVAG----DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PAPFDQVRPAL 244 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l 244 (528)
.+|..-.....+++.+.. ..+.... -++...+|++...| ..+-.+..-++...|+.+.+..+ .........++
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~-~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~ 161 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVS-QFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLF 161 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGH
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 446655555555555542 2222111 23444567777777 44445666677777776665543 22222333444
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhC----cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch-
Q 009700 245 AALQHL-IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAG----VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ- 318 (528)
Q Consensus 245 ~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~- 318 (528)
|.|+.- +-.....+ -...+.|.......+..+ ...+ ++..+-+++.+.. .-..+...|..+....+..
T Consensus 162 ~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~ 235 (435)
T PF03378_consen 162 PPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEA 235 (435)
T ss_dssp HHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHH
T ss_pred HHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHH
Confidence 443321 11111111 112222222222111111 1112 3333334555543 2345777777777655432
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHH---cCcHHHHHHHH-----cc-CChHHHHH
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIE---ANIIAPLVYLL-----QH-AEFEVKKE 388 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll-----~~-~~~~v~~~ 388 (528)
.+..+ ..++..+..-|++....+..+..+..++.++. .+++..-..++ .|++..++.-+ .. ..+.=|+-
T Consensus 236 l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi 314 (435)
T PF03378_consen 236 LEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKI 314 (435)
T ss_dssp HGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhH
Confidence 11111 13445555556554356666666666666654 34444333333 44444444321 11 12333555
Q ss_pred HHHHHHHhcC
Q 009700 389 ASWAISNATS 398 (528)
Q Consensus 389 a~~aL~nl~~ 398 (528)
++.+++++..
T Consensus 315 ~~vGltkLL~ 324 (435)
T PF03378_consen 315 CAVGLTKLLC 324 (435)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555665543
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species | Back alignment and domain information |
|---|
Probab=87.67 E-value=19 Score=33.13 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=66.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQI 362 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~ 362 (528)
..++.++++++.++.. .-..+|-.++..-...-..+-.|-++.|..++.++. +.-+|..|+.++..++...+..+
T Consensus 73 ~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~R 148 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISR 148 (249)
T ss_pred hhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 4788888888765541 111222222211111112222356677788887764 56789999999999998766666
Q ss_pred HHHHHcCcHHHHHHH-HccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 009700 363 QAVIEANIIAPLVYL-LQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPL 417 (528)
Q Consensus 363 ~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 417 (528)
..+++ .+..++.. +...+..+-..-+..++.+-...--..++.+.+.|+++..
T Consensus 149 e~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 149 EEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred HHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 66654 34445444 3333322222222222222211112334555566766553
|
The function of this family is unknown. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=87.51 E-value=4 Score=33.95 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=61.8
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-|.++++.++..|+..|-.++.++.......+.+.+++..|..++. ..++.++..++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45667777888999999999999999999988877788888899999999887 467788888888888777544
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=87.26 E-value=20 Score=33.53 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcC--ChH
Q 009700 132 LQFEAAWALTNIASGTSEHTRVVIEHG--AVPKFVQLLG----SASDDVREQAVWALGNVAGDSPSCRDLVLSHG--ALM 203 (528)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~ 203 (528)
-+.-++..+.-++. ++.....+...+ +...+..++. +..+..+-.++++++|+....+ .+..+.... .+.
T Consensus 79 ~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 79 SRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSIL 156 (268)
T ss_dssp C-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHH
T ss_pred cchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHH
Confidence 35555555555444 444444443332 2333444332 2568888999999999987655 455555432 233
Q ss_pred HHHHhhccch---hhHHHHHHHHHhhhhcCCC-CCC-ChhhhHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhhccCChHH
Q 009700 204 PLLAQLNEHS---KLSMLRNATWTLSNFCRGK-PPA-PFDQVRPALAALQHLIF-S-SDEEVLTDACWALSYLSDGTNDK 276 (528)
Q Consensus 204 ~Ll~ll~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~ll~-~-~d~~v~~~a~~~l~~l~~~~~~~ 276 (528)
..+..+.... +..++..++..+.|++... ... .......++..+...+. . .|++....++-+++++...++..
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 3333332332 7788888899999987543 111 22223445666666433 2 58999999999999999766543
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=87.16 E-value=6 Score=37.40 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=48.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT-RVVIEHGAVPKFVQ----LLG--------SASDDVREQAVWAL 182 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~i~~~a~~~L 182 (528)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-. +|. .+...+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999987 9999999999999998443332 23566675554433 333 24456667777777
Q ss_pred HHhh
Q 009700 183 GNVA 186 (528)
Q Consensus 183 ~nl~ 186 (528)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7764
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.6 Score=35.13 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=62.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|.+.++.++..|+..|..+...-+.....++....++..|+.++....++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988876555667788888999999999884448999999998888876
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.9 Score=44.00 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
.+.++.++.-+|+++|--.....+ ..+|.+++-|.......++.+..-++.-+|... ..+....+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 367889999999999955443322 257888988877778888888888887777552 23457789999999
Q ss_pred hcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 251 IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 251 l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
|..+++-|+..++..|.+|....- +--. .++-+++..|-+.++.++.-|=.+++.+....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~-----vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGI-----VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhh-----hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999876421 1111 24445555566678889999988888887543
|
|
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.27 E-value=49 Score=37.78 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---c---chhhHHHHHHHHHhhhhcCCC-CCCChhhh
Q 009700 168 GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---E---HSKLSMLRNATWTLSNFCRGK-PPAPFDQV 240 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 240 (528)
..+..+++...+.++.++....-+ .++ +| .+.+.+++. . .....+.+.+..+|.-++.+. +..+...+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 346678888888888888744322 111 22 444444442 1 224567888888888888887 66777788
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHhhcc
Q 009700 241 RPALAALQHLIFS-SDEEVLTDACWALSYLSD 271 (528)
Q Consensus 241 ~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~ 271 (528)
.+++..+..+-.. .|..+--.|+..+..+++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 8889888877653 466666666555555543
|
|
| >PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species | Back alignment and domain information |
|---|
Probab=85.14 E-value=31 Score=31.73 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCCCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVA-GDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..++|.++++++.++..+ -..+|-.. .+-+.. -..+..|-+..|..++.+.. +.-++..++.+|..+....+.
T Consensus 72 ~~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~i-lasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFL----EDLFGDFITEDLPRI-LASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhHHHHHHHHcCCcchH----HHHHcchhHhHHHHH-HHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 457899999997654321 11122211 111111 11123455777777774333 566888999999999988765
Q ss_pred CChhhhHHHHHHHHHHhcCCCHH
Q 009700 235 APFDQVRPALAALQHLIFSSDEE 257 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~ 257 (528)
.+...+.-.-..+-..+..++..
T Consensus 147 ~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 147 SREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred CHHHHHHHHHHHHHHHhccCchH
Confidence 55544444444444445444443
|
The function of this family is unknown. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.69 E-value=3.4 Score=37.16 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHh-------cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH-HhcC
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIR-------AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV-IEHG 158 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g 158 (528)
.-|.-|+.+|.|+.-.+ .+.+.++. ..++..|+++|....++-.++-|+-.|.+++.++......+ .+.+
T Consensus 139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 45778899999887653 33333322 23677788888877668999999999999999877666544 4678
Q ss_pred ChHHHHHhhCC
Q 009700 159 AVPKFVQLLGS 169 (528)
Q Consensus 159 ~i~~L~~lL~~ 169 (528)
.|..|+.+++.
T Consensus 217 ~i~~Li~FiE~ 227 (257)
T PF12031_consen 217 CISHLIAFIED 227 (257)
T ss_pred hHHHHHHHHHH
Confidence 99999999975
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.46 E-value=4.1 Score=33.48 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=58.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChH-HHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQ-LQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~-v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+++++.++..|+..|-.+....+.+...++...+++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999998888754555667777888999999988755333 88888888777665
|
Unpublished observations. Domain of unknown function. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=84.30 E-value=6.8 Score=32.17 Aligned_cols=75 Identities=9% Similarity=-0.046 Sum_probs=61.4
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CChHHHHHHHHHHHHHHHhhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++..|..-|.++++.++..|+..|-.++.++...+...+.+..++..|..++.. .++.++..++..+........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455677778899999999999999999999888777777777888889898875 477888888888887776544
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=83.95 E-value=6.2 Score=32.40 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=58.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC--CChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH--DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~l~~ 145 (528)
+++..|.+.|+++++.++..|+..|..+....+.+....+.....+..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999888876444455555657788899999763 347899999988888776
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.77 E-value=17 Score=36.54 Aligned_cols=143 Identities=10% Similarity=0.113 Sum_probs=77.8
Q ss_pred CChHHHHHHhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 326 QGLPRLYQLLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 326 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
++-..|..+|...+ ++.+|...+.+|.-|--.+. +.-..++..++.++..++...|.-+..-+...+.+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 34456777776543 57888888888776643221 11234677788888888888777665444333332211
Q ss_pred HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHH
Q 009700 403 EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482 (528)
Q Consensus 403 ~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~ 482 (528)
....-=....+-..+..+|+.+|+.--..++..+..+-+..-.. +...+..+..---|.++.|.
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~----------------d~~tV~i~~~acf~~~~ki~ 154 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN----------------DSKTVNIITTACFSKVPKIL 154 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc----------------cchhHHHHHHHHhccCcHHH
Confidence 11110011123456677888888865555666665555543322 11112222222567778877
Q ss_pred HHHHHHH
Q 009700 483 EKAVKLL 489 (528)
Q Consensus 483 ~~a~~ii 489 (528)
-.+...+
T Consensus 155 vs~l~Ff 161 (616)
T KOG2229|consen 155 VSGLRFF 161 (616)
T ss_pred HhhhHHh
Confidence 6665533
|
|
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=83.69 E-value=12 Score=28.68 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ 165 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 165 (528)
++|..|+..+..-+... --....+. ..+++..|++.+..+. .-.+..++..+..++. ++.....+.+.|++..|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45666665554333332 22233333 4667888888888887 5688889999999888 7777788888898888766
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009700 166 LLGSASDDVREQAVWAL 182 (528)
Q Consensus 166 lL~~~~~~i~~~a~~~L 182 (528)
+=...++..+..+-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66555565555444333
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.24 E-value=75 Score=37.69 Aligned_cols=231 Identities=16% Similarity=0.101 Sum_probs=117.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+..++..|..++ +..+..+..+++.++..-++ ..++ .+....+++-|.+ .++-.|..-.-+++.+-......-.
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3555566666666 78888888888887762111 1111 1234555555555 5565665555566655422111101
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHHHHH---------
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVLTDA--------- 262 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a--------- 262 (528)
.-.....+..++.+-.++.++.++..++.++..+...........+...+..+..++.+.. .++...-
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 1111223556677775666779999999999888776533334444555555566654322 1221111
Q ss_pred ----HHHHHhhccCChH--HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc
Q 009700 263 ----CWALSYLSDGTND--KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT 336 (528)
Q Consensus 263 ----~~~l~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 336 (528)
..+++.=...+.. .+. ......+-...-++.++++-++..+..++-++-...+.+... .-++..+..+|.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence 1111111111110 111 111122333344456668888899999999887666543211 124455666665
Q ss_pred ccCchhHHHHHHHHHHHHh
Q 009700 337 QNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 337 ~~~~~~v~~~a~~~L~nl~ 355 (528)
++ ..-.|+....++..+.
T Consensus 1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred ch-hhhhhhhHHhhhhHHh
Confidence 55 4444444444444443
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=82.93 E-value=5.7 Score=32.85 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=59.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR-----HDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+++++.++..|+..|..+...-+......+...+++..|+.++.. ..++.|+...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999988887655566777788889999999963 1237899888888877765
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.31 E-value=74 Score=39.26 Aligned_cols=255 Identities=13% Similarity=0.063 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH---HH--hcCChHHHHH
Q 009700 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL---VL--SHGALMPLLA 207 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~---~~--~~g~i~~Ll~ 207 (528)
-..|.+.+.++-.........+ -..+...+...+++++..+...+..+....+.+++. .. ....+..+..
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFV-----QQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLT 535 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHH
Confidence 4446666666655211111111 112344566678889988877766665333321110 00 1112333333
Q ss_pred hhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 208 QLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 208 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
+-..++++.++......+. . ...........+..+...+....-.++..+...+++++..++...-..+..-.+.
T Consensus 536 ~aia~~~~~i~~~v~~~l~---~--~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~ 610 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLN---E--RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE 610 (2341)
T ss_pred HhccCCCcchhhhHHhhhc---c--chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH
Confidence 3333444444333332222 1 1111112233444455556666677888888888988887764433322222222
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
.+-.+..+.-..+...+..-+..+...........+ ...+..++..+..+ +..+.+.+..+++.||.-..+.....++
T Consensus 611 ~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~ 688 (2341)
T KOG0891|consen 611 LLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD 688 (2341)
T ss_pred HhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc
Confidence 222222222222222232223322222222222222 24557788888888 8889999999999999744433434444
Q ss_pred cCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCC
Q 009700 368 ANIIAPLVYLLQHA-EFEVKKEASWAISNATSGG 400 (528)
Q Consensus 368 ~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~ 400 (528)
..++.+.+.+... ...-+..+.+++.++....
T Consensus 689 -~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 689 -ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred -hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 4566666666543 4566778889999987643
|
|
| >PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor | Back alignment and domain information |
|---|
Probab=82.04 E-value=23 Score=37.98 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
+.-|+.+|.++|..+.+++-..+........+. . ++..|+.+.-..+. ..++.+|..+ .+.+.+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~-----l~~~l~~y~~~t~s---~~~~~il~~~---~~P~~K--- 69 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP--W-----LVNGLVDYYLSTNS---QRALEILVGV---QEPHDK--- 69 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--H-----HHHHHHHHHhhcCc---HHHHHHHHhc---CCccHH---
Confidence 456778888888888888777776555433211 1 24445554333221 1233333322 222112
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCH
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~ 402 (528)
.++..|-..+..+ ..|..++..|+.+....+.....+.+..+++.|+.+|... +..+...|+.+|.-+.-..+.
T Consensus 70 --~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 70 --HLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred --HHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 3445677777644 6788999999999998888888899999999999998765 677777888888877665443
Q ss_pred HHHHHHHHCCChHHHHhhcCC
Q 009700 403 EQIQFLVSQGCIKPLCDLLVC 423 (528)
Q Consensus 403 ~~~~~l~~~~~l~~L~~ll~~ 423 (528)
....+|-+ ++..+..++.+
T Consensus 145 ~l~~~L~~--Lf~If~Rl~~W 163 (668)
T PF04388_consen 145 SLGPHLPD--LFNIFGRLLSW 163 (668)
T ss_pred hhhHHHHH--HHHHHHHHHHc
Confidence 33344433 55566666643
|
The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking []. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=81.91 E-value=33 Score=29.78 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=52.0
Q ss_pred CChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 326 QGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 326 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
-.++.+.+-|... +...+-.|...+..+... ..+.+-.++. .+++.|-..|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3566677777666 555666666666666654 5555555554 478888889999999999999999999955
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=81.65 E-value=9.7 Score=32.97 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred CcHHHHHHHHccCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 369 NIIAPLVYLLQHAEFEVKKEASWAISNATSG-GTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 369 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
-.+|.+++=|...+...+--|...+..+... +.......+-+ ++.+|-..|++.|+++...+|.+|..++..++...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq--LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ--LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 4678888888888888888888888888776 33333333333 78899999999999999999999999976655443
Q ss_pred hccCCcchhhHHHh
Q 009700 448 EAGSTTANVYSEMI 461 (528)
Q Consensus 448 ~~~~~~~~~~~~~l 461 (528)
.. .++|...+
T Consensus 116 ~a----LvPyyrqL 125 (183)
T PF10274_consen 116 EA----LVPYYRQL 125 (183)
T ss_pred HH----HHHHHHHH
Confidence 21 45555444
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=81.09 E-value=19 Score=34.10 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=37.9
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-HHHhccCChHHHHHHh
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-QCVIDNQGLPRLYQLL 335 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL 335 (528)
++|.++.++.+.++.++..++.++..+....+... ..+.+.|..+.+.+.+
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 78999999999999999999999999987654322 2355566555544443
|
|
| >PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control [] | Back alignment and domain information |
|---|
Probab=80.93 E-value=49 Score=30.95 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=43.3
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 70 KLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.++.+..|...++.+|+..+ .....+... .+++..++|.|+..=. + +.+...++..|.+++.
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 45678899999998777665 333333211 2455677888777633 3 7899999999999987
|
This family includes related proteins from a number of fungal species and from Arabidopsis thaliana. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=80.39 E-value=32 Score=35.02 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=76.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-------ChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-------LPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~v~~~a~~~L~~l~~ 145 (528)
-..++.+.+.+.++..+..|+..|+ . ++.++. ++|.|+.++..+- +-.+.......+..+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~---T---DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLE---T---DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc---c---CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 3677888888899999999988886 2 334444 3888888887542 23455556666666666
Q ss_pred CChhhHHHHHhcCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGS----------ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
++...-...=.-++|.++.++-+ .+..+|+.|+..+..+|.+....-+. +...++..+.+.+
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKAL 348 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Confidence 54443332223467877776643 34678888888888887554432222 2223444444444
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=80.36 E-value=11 Score=30.98 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=59.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC--hHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD--PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-|.++++.++..|+..|-.++.++.......+.+.+++..|..++.... +.+...++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45567777889999999999999999999988888888888899999999887743 337777777776665543
|
Unpublished observations. Domain of unknown function. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 528 | ||||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 0.0 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 0.0 | ||
| 2jdq_A | 450 | C-Terminal Domain Of Influenza A Virus Polymerase P | 1e-139 | ||
| 3tj3_A | 447 | Structure Of Importin A5 Bound To The N-Terminus Of | 1e-139 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-135 | ||
| 2c1t_A | 454 | Structure Of The Kap60p:nup2 Complex Length = 454 | 1e-133 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 1e-131 | ||
| 1bk5_A | 422 | Karyopherin Alpha From Saccharomyces Cerevisiae Len | 1e-130 | ||
| 1bk6_A | 422 | Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng | 1e-129 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 1e-129 | ||
| 1ee5_A | 424 | Yeast Karyopherin (Importin) Alpha In A Complex Wit | 1e-129 | ||
| 3tpo_A | 529 | Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP | 1e-120 | ||
| 4ba3_A | 496 | Mimp_alphadibb_a89nls Length = 496 | 1e-119 | ||
| 3rz9_A | 510 | Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt | 1e-119 | ||
| 1q1s_C | 466 | Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid | 1e-119 | ||
| 4htv_A | 509 | Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex | 1e-119 | ||
| 3ukw_B | 510 | Mouse Importin Alpha: Bimax1 Peptide Complex Length | 1e-119 | ||
| 1ejl_I | 460 | Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti | 1e-118 | ||
| 3fex_C | 467 | Crystal Structure Of The Cbc-Importin Alpha Complex | 1e-118 | ||
| 2ynr_A | 461 | Mimp_alphadibb_b54nls Length = 461 | 1e-115 | ||
| 1ial_A | 453 | Importin Alpha, Mouse Length = 453 | 1e-115 | ||
| 3btr_C | 427 | Ar-Nls:importin-Alpha Complex Length = 427 | 1e-115 | ||
| 3l3q_A | 427 | Mouse Importin Alpha-Peptm Nls Peptide Complex Leng | 1e-115 | ||
| 3ve6_A | 426 | Crystal Structure Analysis Of Venezuelan Equine Enc | 1e-115 | ||
| 1y2a_C | 428 | Structure Of Mammalian Importin Bound To The Non-Cl | 1e-115 | ||
| 2c1m_A | 424 | Nup50:importin-Alpha Complex Length = 424 | 1e-115 | ||
| 3tpm_A | 422 | Crystal Structure Of Mal Rpel Domain In Complex Wit | 1e-115 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 1e-36 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 2e-29 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 1e-28 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 7e-26 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 9e-27 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 1e-22 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 9e-22 |
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 | Back alignment and structure |
|
| >pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 | Back alignment and structure |
|
| >pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
| >pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 | Back alignment and structure |
|
| >pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 | Back alignment and structure |
|
| >pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 | Back alignment and structure |
|
| >pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 | Back alignment and structure |
|
| >pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 | Back alignment and structure |
|
| >pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 | Back alignment and structure |
|
| >pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 | Back alignment and structure |
|
| >pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 | Back alignment and structure |
|
| >pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 | Back alignment and structure |
|
| >pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 | Back alignment and structure |
|
| >pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 | Back alignment and structure |
|
| >pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 | Back alignment and structure |
|
| >pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 | Back alignment and structure |
|
| >pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 | Back alignment and structure |
|
| >pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 585 bits (1508), Expect = 0.0
Identities = 270/519 (52%), Positives = 344/519 (66%), Gaps = 15/519 (2%)
Query: 9 TEVRKKSYKT--GVDADEARRRREDNLVEIRKNKREDSLLKKRR--------EGLILQSQ 58
E R+ ++K ADE RRRR+ VE+RK KR+++L K+R +
Sbjct: 14 PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73
Query: 59 PVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVP 118
V+ + + +P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVP
Sbjct: 74 SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Query: 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQA 178
R VEF+ + LQ EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPF 237
+WALGNVAGDS RD VL A+ P+L N +K S++R ATWTLSN CRGK P +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS 297
V AL L LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 298 TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG 357
T V PALR VGNIVTG+D QTQ VI+ LP L LL + K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAG 371
Query: 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT--REQIQFLVSQGCIK 415
+ QIQAVI+AN+I PLV LL+ AE++ KKEA WAISNA+SGG + I++LVSQGCIK
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS 475
PLCDLL D RI+ V L+ LENILK+GEADKEA N ++ I++ G++KI N Q
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ 491
Query: 476 HDNNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFG 514
++N++IYEKA K++E Y+ EEED N FG
Sbjct: 492 NENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTFG 530
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 566 bits (1461), Expect = 0.0
Identities = 227/511 (44%), Positives = 311/511 (60%), Gaps = 14/511 (2%)
Query: 23 DEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVL 82
R + E K E + G + + + ++ S+ +V+G+
Sbjct: 8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGIN 67
Query: 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTN 142
S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +QFE+AWALTN
Sbjct: 68 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 127
Query: 143 IASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGAL 202
IASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD + RDLV+ HGA+
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187
Query: 203 MPLLAQLNEHS----KLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEE 257
PLLA L LRN TWTLSN CR K P P D V L L L+ +D E
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247
Query: 258 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317
VL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR +GNIVTG D
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307
Query: 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYL 377
QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+ ++ LV +
Sbjct: 308 QTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366
Query: 378 LQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437
L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +I+ V L+ +
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426
Query: 438 NILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497
NI + E E S MI+EC GLDKIE LQ H+N +Y+ ++ L+E+Y+ EE
Sbjct: 427 NIFQAAEKLGE-----TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481
Query: 498 DDEQNI-PDGNNPEFNFGTGQPNIPSEGFKF 527
+++QN+ P+ + F F + F F
Sbjct: 482 EEDQNVVPETTSEGFAF--QVQDGAPGTFNF 510
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 555 bits (1431), Expect = 0.0
Identities = 256/441 (58%), Positives = 314/441 (71%), Gaps = 3/441 (0%)
Query: 62 EANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIR-AGVVPRF 120
N + M++ + S++ QL AT +FRKLLS E PPI+EVI GVV RF
Sbjct: 10 INNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARF 69
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
VEFL R + LQFE+AW LTNIASG S TR+VI+ GAVP F++LL S +DV+EQAVW
Sbjct: 70 VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVW 129
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQ 239
ALGN+AGDS CRD VL L PLL ++ ++L+M RNA W LSN CRGK PP F +
Sbjct: 130 ALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK 189
Query: 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT 299
V P L L L+F SD +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL+H+
Sbjct: 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK 249
Query: 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359
V+ PALR VGNIVTGDD QTQ +++ L L LL + K+SIKKEACWTISNITAG+R
Sbjct: 250 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNR 308
Query: 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCD 419
+QIQ VI+ANI L+ +LQ AEF +KEA+WAI+NATSGG+ EQI++LV GCIKPLCD
Sbjct: 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368
Query: 420 LLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNN 479
LL D +IV V L GLENIL++GE + + T N Y +I+E GLDKIE LQSH+N
Sbjct: 369 LLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQ 428
Query: 480 EIYEKAVKLLERYWVEEEDDE 500
EIY+KA L+E Y+ E++D
Sbjct: 429 EIYQKAFDLIEHYFGTEDEDS 449
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 4e-52
Identities = 63/356 (17%), Positives = 136/356 (38%), Gaps = 19/356 (5%)
Query: 142 NIASGTSEHTRVVI--EHGAVPKFVQLLGSASDDVREQAVWALGNVA--GDSPSCRDLVL 197
+ ++ + + ++++ S S + + A + +P +++
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRP-ALAALQHLIFSSDE 256
+ G + + L ++ + W L+N G ++ A+ L+ S E
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTGD 315
+V A WAL ++ + V++ + P L++L + T+ A+ + N+ G
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 316 DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLV 375
+ + L L LL + +ACW +S ++ G +IQAVI+A + LV
Sbjct: 182 SPPPEFAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240
Query: 376 YLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEG 435
LL H +++V A A+ N + G Q Q +++ ++ L LL P I
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299
Query: 436 LENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491
+ NI A + + + + + + ++ ++A +
Sbjct: 300 ISNI---------TAGNRAQI--QTVIDANIFPALISILQTAEFRTRKEAAWAITN 344
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 348 bits (893), Expect = e-113
Identities = 76/455 (16%), Positives = 147/455 (32%), Gaps = 20/455 (4%)
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
+ +I + + + ++V+ + + N T LS R + + ++G +P
Sbjct: 45 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPAL 103
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
V+ L + + F A L N+ V G + K V LL +
Sbjct: 104 VKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
L +A + + ++L+ G L+ + ++ +L + L P
Sbjct: 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+ AL + + ++ + W L LSD + G+ LV+LL V
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 279
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ-NYKKSIKKEACWTISNITAGSR 359
+ A + N+ + V G+ L + + + ++ I + A + ++T+ +
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339
Query: 360 S---QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416
AV + +V LL +A+ + + L QG I
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPR 398
Query: 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEA---GSTTA-------NVYSEMIDECDG 466
L LLV G + E G T A +I +
Sbjct: 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 458
Query: 467 LDKIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQ 501
+ L I A +L ++E E
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 493
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 8e-73
Identities = 78/454 (17%), Positives = 144/454 (31%), Gaps = 45/454 (9%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
IP++V+ + S + A T LL + V AG + + V L++ + +
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFL 157
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD-DVREQAVWALGNVAGDSPSC 192
L +A G E +++ G V ++ + + + L ++ S
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 216
Query: 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF 252
+ ++ G + L +++N WTL N + + L L L+
Sbjct: 217 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 273
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT--VLVPALRTVGN 310
S D V+T A LS L+ V + G LV +L + + PA+ + +
Sbjct: 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333
Query: 311 IVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+ + V + GLP + +LL +A + A + + E
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 392
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGG--------------------TREQIQF 407
I LV LL A + ++ S +
Sbjct: 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 452
Query: 408 LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGL 467
+ I LL P I V L + + E +E I+
Sbjct: 453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE------------AAEAIEAEGAT 500
Query: 468 DKIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQ 501
+ L N + A +L R ++ D +
Sbjct: 501 APLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 534
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 1e-69
Identities = 83/439 (18%), Positives = 156/439 (35%), Gaps = 25/439 (5%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
IP + + + E+ + +A +L E + +V V + + +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
A L N+ S E + + G +P V++LGS D V A+ L N+ +
Sbjct: 75 RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRP-ALAALQHLIF 252
V G L ++A LN+ + L T L G + + AL +++
Sbjct: 134 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192
Query: 253 S-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311
+ + E++L L LS +++K A++EAG L L S ++ L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Query: 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANII 371
D T+ L L QLL + ++ A +SN+T + V + I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 372 APLVYLLQ--HAEFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPR 427
LV + ++ + A A+ + TS + + + LL P
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 428 IVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVK 487
+ GL L + A+ + E + ++ L + + +
Sbjct: 368 PLIKATVGLIRNLALCPANHAP-----------LREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 488 LLERYWVEEEDDEQNIPDG 506
+ E + I +G
Sbjct: 417 GGTQQQFVEGVRMEEIVEG 435
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 9e-68
Identities = 60/384 (15%), Positives = 134/384 (34%), Gaps = 22/384 (5%)
Query: 108 IEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167
+ + +P + L+ D + +AA + ++ + ++ V V+ +
Sbjct: 7 DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65
Query: 168 GSASD-DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226
+ +D + L N++ + G + L+ L S+L A TL
Sbjct: 66 QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123
Query: 227 NFCRGKPPAPFDQVRP--ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAG 284
N + A VR L + L+ ++ + L L L+ G + ++ +G
Sbjct: 124 NLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182
Query: 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIK 344
LV ++ + L+ V +++ + +++ G+ L L + + +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLV 241
Query: 345 KEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQ 404
+ WT+ N++ + Q ++ LV LL + V A+ +SN T +
Sbjct: 242 QNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KN 297
Query: 405 IQFLVSQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMID 462
+ G I+ L ++ I + L ++ + A + +
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT--------SRHQEAEMAQNAVR 349
Query: 463 ECDGLDKIENLQSHDNNEIYEKAV 486
GL + L ++ KA
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKAT 373
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 2e-59
Identities = 56/343 (16%), Positives = 118/343 (34%), Gaps = 18/343 (5%)
Query: 149 EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQ 208
+ A+P+ +LL V +A + ++ S ++ S + ++
Sbjct: 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Query: 209 LNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSY 268
+ + + R TL N + + AL ++ S + VL A L
Sbjct: 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328
L AV AG ++V LL ++ L + + G+ ++ + G
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388
L ++ + + + + + S A++EA + L L + +
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243
Query: 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKE 448
W + N + T+++ +G + L LL D +VT L N+ +K
Sbjct: 244 CLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 449 AGSTTANVYSEMIDECDGLDKIENL--QSHDNNEIYEKAVKLL 489
+ + G++ + ++ D +I E A+ L
Sbjct: 300 M-----------VCQVGGIEALVRTVLRAGDREDITEPAICAL 331
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-31
Identities = 58/436 (13%), Positives = 115/436 (26%), Gaps = 91/436 (20%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP--IEEVIRAGVVPRFVEFLDR-HDLP 130
+ ++VQ + S++ + A L ++ V + G + V + R D
Sbjct: 265 LGTLVQLLGSDDINVVTCAA---GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321
Query: 131 QLQFEAAWALTNIASGTSEHTRV---VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAG 187
+ A AL ++ S E V H +P V+LL S +A L
Sbjct: 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 381
Query: 188 DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAAL 247
P+ + GA+ P L QL + R + + + + V AL
Sbjct: 382 LCPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 440
Query: 248 Q----------------------HLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285
L++S E + A L L+ + +A+ G
Sbjct: 441 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGA 499
Query: 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345
L ELL + + +
Sbjct: 500 TAPLTELLHSRN-------------------------------------------EGVAT 516
Query: 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405
A + ++ + + + + L + + A + G
Sbjct: 517 YAAAVLFRMSEDKPQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGAQG------ 567
Query: 406 QFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECD 465
+ P + ++ + G + D
Sbjct: 568 -EPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGG-----HHPGADYPVDGLPDLGH 621
Query: 466 GLDKIENLQSHDNNEI 481
D ++ L D+N++
Sbjct: 622 AQDLMDGLPPGDSNQL 637
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 29/217 (13%), Positives = 73/217 (33%), Gaps = 14/217 (6%)
Query: 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333
N + A + P L +LL V+ A V + + ++ + Q + + +
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
+ + T+ N+ + R + A+ ++ I LV +L V A +
Sbjct: 64 TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 394 SNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTT 453
N + G ++ + LL + + + + + L+ + + K
Sbjct: 123 HN-LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI---- 177
Query: 454 ANVYSEMIDECDGLDK-IENLQSHDNNEIYEKAVKLL 489
I G + ++++ ++ ++L
Sbjct: 178 -------ILASGGPQALVNIMRTYTYEKLLWTTSRVL 207
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-111
Identities = 74/442 (16%), Positives = 143/442 (32%), Gaps = 20/442 (4%)
Query: 62 EANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV 121
+ +I + + + ++V+ + + N T LS R + + ++G +P V
Sbjct: 49 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALV 107
Query: 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWA 181
+ L + + F A L N+ V G + K V LL +
Sbjct: 108 KML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166
Query: 182 LGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241
L +A + + ++L+ G L+ + ++ +L + L P
Sbjct: 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226
Query: 242 PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVL 301
+ AL + + ++ + W L LSD + G+ LV+LL V+
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVV 283
Query: 302 VPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ-NYKKSIKKEACWTISNITAGSRS 360
A + N+ + V G+ L + + + ++ I + A + ++T+ +
Sbjct: 284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343
Query: 361 ---QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPL 417
AV + +V LL +A+ + + L QG I L
Sbjct: 344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRL 402
Query: 418 CDLLVCPDPRIVTVCLEGLENILKIGEADKE---AGSTTA-------NVYSEMIDECDGL 467
LLV G + E G T A +I + +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 468 DKIENLQSHDNNEIYEKAVKLL 489
L I A +L
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVL 484
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 1e-80
Identities = 80/438 (18%), Positives = 151/438 (34%), Gaps = 23/438 (5%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
IP + + + E+ + +A +L E + +V V + + +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
A L N+ S E + + G +P V++LGS D V A+ L N+ +
Sbjct: 78 RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRP-ALAALQHLIF 252
V G L ++A LN+ + + L T L G + + AL +++
Sbjct: 137 MAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
+ E L + + + A++EAG L L S ++ L T+ N+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
D T+ L L QLL + ++ A +SN+T + V + I
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 373 PLVYLLQHA--EFEVKKEASWAISNATSGGT--REQIQFLVSQGCIKPLCDLLVCPDPRI 428
LV + A ++ + A A+ + TS + + + LL P
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371
Query: 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKL 488
+ GL L + A+ + E + ++ L + + +
Sbjct: 372 LIKATVGLIRNLALCPANHAP-----------LREQGAIPRLVQLLVRAHQDTQRRTSMG 420
Query: 489 LERYWVEEEDDEQNIPDG 506
+ E + I +G
Sbjct: 421 GTQQQFVEGVRMEEIVEG 438
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 3e-75
Identities = 78/444 (17%), Positives = 142/444 (31%), Gaps = 45/444 (10%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
IP++V+ + S + A T LL + V AG + + V L++ + +
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFL 160
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD-DVREQAVWALGNVAGDSPSC 192
L +A G E +++ G V ++ + + + L ++ S
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219
Query: 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF 252
+ ++ G + L L +++N WTL N + + L L L+
Sbjct: 220 KPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDA--ATKQEGMEGLLGTLVQLLG 276
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV--PALRTVGN 310
S D V+T A LS L+ V + G LV +L + + PA+ + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336
Query: 311 IVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+ + V + GLP + +LL +A + A + + E
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQF-------------------- 407
I LV LL A + ++ S + +
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455
Query: 408 LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGL 467
+ I LL P I V L + + E +E I+
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE------------AAEAIEAEGAT 503
Query: 468 DKIENLQSHDNNEIYEKAVKLLER 491
+ L N + A +L R
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFR 527
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 4e-64
Identities = 58/353 (16%), Positives = 123/353 (34%), Gaps = 21/353 (5%)
Query: 139 ALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLS 198
A+ N+ + + A+P+ +LL V +A + ++ S ++ S
Sbjct: 1 AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 199 HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEV 258
+ ++ + + + R TL N + + AL ++ S + V
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 259 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318
L A L L AV AG ++V LL ++ L + + G+
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
Query: 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378
++ + G L ++ + + + + + S A++EA + L L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236
Query: 379 QHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438
+ + W + N + T+++ +G + L LL D +VT L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 439 ILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL--QSHDNNEIYEKAVKLL 489
+ + M+ + G++ + ++ D +I E A+ L
Sbjct: 293 L-----------TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 205 bits (522), Expect = 1e-59
Identities = 58/387 (14%), Positives = 135/387 (34%), Gaps = 21/387 (5%)
Query: 108 IEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167
+ + +P + L+ D + +AA + ++ + ++ V V+ +
Sbjct: 10 DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68
Query: 168 GSASD-DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226
+ +D + L N++ + G + L+ L S+L A TL
Sbjct: 69 QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126
Query: 227 NFCRGKPPAPFDQVRP-ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285
N + A L + L+ ++ + L L L+ G + ++ +G
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345
LV ++ + L+ V +++ + +++ G+ L L + + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 245
Query: 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405
WT+ N++ + Q ++ LV LL + V A+ +SN T +
Sbjct: 246 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 301
Query: 406 QFLVSQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDE 463
+ G I+ L ++ I + L ++ + A + +
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT--------SRHQEAEMAQNAVRL 353
Query: 464 CDGLDK-IENLQSHDNNEIYEKAVKLL 489
GL ++ L + + + V L+
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLI 380
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 2e-55
Identities = 63/371 (16%), Positives = 118/371 (31%), Gaps = 34/371 (9%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
++V + + L T++ K+LS+ ++ AG + L +L
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLV 244
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
W L N++ T+ G + VQLLGS +V A L N+ ++ +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 194 DLVLSHGALMPLLAQL-NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR----PALAALQ 248
+V G + L+ + + + A L + A Q L +
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361
Query: 249 HLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308
L+ L A L + E G PRLV+LL+ +
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421
Query: 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEA 368
+ + + ++ E C +I A +
Sbjct: 422 TQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRGL 459
Query: 369 NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428
N I V LL +++ A+ + +E + + ++G PL +LL + +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517
Query: 429 VTVCLEGLENI 439
T L +
Sbjct: 518 ATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 2e-29
Identities = 44/286 (15%), Positives = 84/286 (29%), Gaps = 28/286 (9%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR-HDLPQL 132
+ ++VQ + S++ + A L V + G + V + R D +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDI 326
Query: 133 QFEAAWALTNIASGTSEHTRV---VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189
A AL ++ S E V H +P V+LL S +A L
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386
Query: 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH 249
P+ + GA+ L+ L + R + + + + V AL
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445
Query: 250 LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309
L + + P V+LL + A +
Sbjct: 446 LARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485
Query: 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355
+ D + + L +LL + + + A + ++
Sbjct: 486 ELAQ-DKEAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 8e-12
Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 4/120 (3%)
Query: 67 IEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR 126
+ + T L + +P FV+ L
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLL-Y 470
Query: 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
+ +Q AA L +A E + GA +LL S ++ V A L ++
Sbjct: 471 SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 297 bits (761), Expect = 4e-92
Identities = 74/451 (16%), Positives = 145/451 (32%), Gaps = 20/451 (4%)
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
+ +I + + + ++V+ + + N T+ LS R + + ++G +P
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPAL 239
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
V L + + F A L N+ V G + K V LL +
Sbjct: 240 VNML-GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
L +A + + ++L+ G L+ + ++ +L + L P
Sbjct: 299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 358
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+ AL + + ++ + W L LSD + G+ LV+LL V
Sbjct: 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 415
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ-NYKKSIKKEACWTISNITAG-- 357
+ A + N+ + V G+ L + + + ++ I + A + ++T+
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475
Query: 358 -SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416
+ AV + +V LL +A+ + + L QG I
Sbjct: 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPR 534
Query: 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKE---AGSTTA-------NVYSEMIDECDG 466
L LLV G + E T A +I +
Sbjct: 535 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT 594
Query: 467 LDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497
+ L I A +L ++E
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKE 625
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 2e-73
Identities = 69/432 (15%), Positives = 142/432 (32%), Gaps = 25/432 (5%)
Query: 62 EANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV 121
N + + + + Q T R R E + G+
Sbjct: 57 VDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPST 111
Query: 122 EFLDRHDLP-QLQFEAAWALTNIASGTSEH-TRVVIEHGAVPKFVQLLGSASDDVREQAV 179
+F H Q E + L + + + A+P+ +LL V +A
Sbjct: 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAA 171
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ 239
+ ++ S ++ S + ++ + + + R + TL N +
Sbjct: 172 VMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231
Query: 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT 299
+ AL +++ S + VL A L L AV AG ++V LL ++
Sbjct: 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 291
Query: 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359
L + + G+ ++ + G L ++ + Y + + +
Sbjct: 292 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCS 350
Query: 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCD 419
S A++EA + L L + + W + N + T+++ +G + L
Sbjct: 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM----EGLLGTLVQ 406
Query: 420 LLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL--QSHD 477
LL D +VT L N+ +K + + G++ + ++ D
Sbjct: 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMM-----------VCQVGGIEALVRTVLRAGD 455
Query: 478 NNEIYEKAVKLL 489
+I E A+ L
Sbjct: 456 REDITEPAICAL 467
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 1e-72
Identities = 79/455 (17%), Positives = 145/455 (31%), Gaps = 45/455 (9%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
IP++V + S + A T LL + V AG + + V L++ + +
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFL 293
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDD-VREQAVWALGNVAGDSPSC 192
L +A G E +++ G V ++ + + + + L ++ S
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352
Query: 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF 252
+ ++ G + L +++N WTL N + + L L L+
Sbjct: 353 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDA--ATKQEGMEGLLGTLVQLLG 409
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTT--VLVPALRTVGN 310
S D V+T A LS L+ V + G LV +L + + PA+ + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469
Query: 311 IVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+ + V + GLP + +LL +A + A + + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 528
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGG--------------------TREQIQF 407
I LV LL A + ++ S +
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588
Query: 408 LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGL 467
+ I LL P I V L + + EA +E I+
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA------------AEAIEAEGAT 636
Query: 468 DKIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQN 502
+ L N + A +L R ++ D +
Sbjct: 637 APLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 211 bits (537), Expect = 4e-60
Identities = 69/435 (15%), Positives = 132/435 (30%), Gaps = 36/435 (8%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
++V + + L T++ K+LS+ ++ AG + L +L
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLV 377
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
W L N++ T+ G + VQLLGS +V A L N+ ++ +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434
Query: 194 DLVLSHGALMPLLAQL-NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR----PALAALQ 248
+V G + L+ + + + A L + A Q L +
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494
Query: 249 HLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308
L+ L A L + E G PRLV+LL+ +
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554
Query: 309 GNIVTGDDTQT---------------------QCVIDNQGLPRLYQLLTQNYKKSIKKEA 347
+ + + +P QLL + ++I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 613
Query: 348 CWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQF 407
+ + A + +A+ APL LL V A+ + + + +
Sbjct: 614 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK-PQDYKK 671
Query: 408 LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAG--STTANVYSEMIDECD 465
+S L + L+ +G + S + Y + D
Sbjct: 672 RLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMD 731
Query: 466 GLDKIENLQSHDNNE 480
+ + E H +
Sbjct: 732 PMMEHEMAGHHPGPD 746
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 8e-17
Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 30/224 (13%)
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP-IEEVIRAGVVPR 119
E + + +P +V+ + + ++AT + L++ CP + G +PR
Sbjct: 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPR 534
Query: 120 FVEFLDRHDLPQLQFEAAWALTNIASG--------------------TSEHTRVVI-EHG 158
V+ L R Q + T H R+VI
Sbjct: 535 LVQLLVRAH-QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN 593
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSML 218
+P FVQLL S ++++ A L +A D + + + GA PL +L +
Sbjct: 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLT-ELLHSRNEGVA 651
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDA 262
A L KP D + L +F ++ +
Sbjct: 652 TYAAAVLFRMSEDKPQ---DYKKRLSVELTSSLFRTEPMTWNET 692
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 2e-90
Identities = 92/250 (36%), Positives = 132/250 (52%), Gaps = 13/250 (5%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
L + + S D + A S + N++IQAVI+AG P LV+LL + +L
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
AL + NI +G + Q Q VID LP L QLL + + I +EA W +SNI +G QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422
QAVI+A + LV LL ++ +EA WA+SN SGG EQIQ ++ G + L LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLS 190
Query: 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482
P+ +I+ L L NI G K + + E L+K+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLEQLQSHENEKIQ 239
Query: 483 EKAVKLLERY 492
++A + LE+
Sbjct: 240 KEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 8e-88
Identities = 87/253 (34%), Positives = 133/253 (52%), Gaps = 4/253 (1%)
Query: 62 EANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV 121
+ +P M Q + S++ QL AT +F ++LS + I+ VI AG +P V
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALV 60
Query: 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWA 181
+ L + Q+ EA WAL+NIASG +E + VI+ GA+P VQLL S ++ + ++A+WA
Sbjct: 61 QLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 119
Query: 182 LGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241
L N+A V+ GAL P L QL +L+ A W LSN G +
Sbjct: 120 LSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 242 -PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
AL AL L+ S +E++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 301 LVPALRTVGNIVT 313
A + + +
Sbjct: 239 QKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 12/131 (9%)
Query: 359 RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLC 418
R + + + L + + + A+ S S G EQIQ ++ G + L
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60
Query: 419 DLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDN 478
LL P+ +I+ L L NI A + + + + L + L S N
Sbjct: 61 QLLSSPNEQILQEALWALSNI---------ASGGNEQI--QAVIDAGALPALVQLLSSPN 109
Query: 479 NEIYEKAVKLL 489
+I ++A+ L
Sbjct: 110 EQILQEALWAL 120
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 6e-81
Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 2/197 (1%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
L + + S D++ L A LS ++ G N++IQAVI+AG P LV+LL + +L
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
AL + NI +G + Q Q VID LP L QLL + + I +EA W +SNI +G QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422
QAVI+A + LV LL ++ +EA WA+SN SGG EQ Q + G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 190
Query: 423 CPDPRIVTVCLEGLENI 439
+ +I E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 7e-53
Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 11/210 (5%)
Query: 109 EEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG 168
+P+ V+ L+ D Q A L+ IASG +E + VI+ GA+P VQLL
Sbjct: 6 HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 169 SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228
S ++ + ++A+WAL N+A V+ GAL L+ L +L+ A W LSN
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 123
Query: 229 CRGKPPAPFDQVRP-----ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA 283
G +Q++ AL AL L+ S +E++L +A WALS ++ G N++ QAV EA
Sbjct: 124 ASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179
Query: 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVT 313
G +L +L H + + A + + +
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-49
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 43/245 (17%)
Query: 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS 213
+P+ VQ L S + A+ L +A V+ GAL L+ L+
Sbjct: 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS--- 64
Query: 214 KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273
S +E++L +A WALS ++ G
Sbjct: 65 ---------------------------------------SPNEQILQEALWALSNIASGG 85
Query: 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333
N++IQAVI+AG P LV+LL + +L AL + NI +G + Q Q VID LP L Q
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
LL + + I +EA W +SNI +G Q QAV EA + L L H +++KEA A+
Sbjct: 146 LL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Query: 394 SNATS 398
S
Sbjct: 205 EKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-14
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%)
Query: 359 RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLC 418
R + + +V L + + + A +S S G EQIQ ++ G + L
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60
Query: 419 DLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDN 478
LL P+ +I+ L L NI G ++ + + + L + L S N
Sbjct: 61 QLLSSPNEQILQEALWALSNIA-SGGNEQ----------IQAVIDAGALPALVQLLSSPN 109
Query: 479 NEIYEKAVKLL 489
+I ++A+ L
Sbjct: 110 EQILQEALWAL 120
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 9e-69
Identities = 63/351 (17%), Positives = 119/351 (33%), Gaps = 35/351 (9%)
Query: 89 QLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148
Q+ A + P +++ + A L + S
Sbjct: 15 QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63
Query: 149 EHTRVVIEHGAVPKFVQLLGS-----------ASDDVREQAVWALGNVAGDSPSCRDLVL 197
EH + E G + +LL S +R A AL N+ + + +
Sbjct: 64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123
Query: 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR--PALAAL-QHLIFSS 254
S M L + + + L N +R ++ AL + +
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183
Query: 255 DEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVP-------ALR 306
E L AL LS T +K G LV L + S T + LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243
Query: 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366
V +++ ++ Q + +N L L Q L +++ +I AC T+ N++A + +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 367 EANIIAPLVYLLQHAEFEVKKEASWAISNATSGG-TREQIQFLVSQGCIKP 416
+ ++ L L+ + ++ A+ N + + + ++S G P
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 2e-21
Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 8/167 (4%)
Query: 74 IPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFL---DRHDL 129
+ ++++ L + + L + + G + V L + +
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231
Query: 130 PQLQFEAAWALTNIAS---GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
+ L N++S +H +++ E+ + +Q L S S + A L N++
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233
+P ++ + GA+ L ++ + + L N +P
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRP 337
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 4e-17
Identities = 36/275 (13%), Positives = 81/275 (29%), Gaps = 53/275 (19%)
Query: 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274
L +R T + P + ++ + + E + A L LS
Sbjct: 13 LEQIRAYCETCWEWQEAH--------EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64
Query: 275 DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334
+ A+ E G + ELL Q +Y L
Sbjct: 65 HR-HAMNELGGLQAIAELL--------------------------------QVDCEMYGL 91
Query: 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAI 393
+Y ++++ A ++N+T G + + + LV L+ ++++ + +
Sbjct: 92 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151
Query: 394 SNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKIGEADKEAGST 452
N + + L G +K L + + + L L N+ +K
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD--- 208
Query: 453 TANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVK 487
+ L + ++ + ++
Sbjct: 209 -------ICAVDGALAFLVGTLTYRSQTNTLAIIE 236
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 14/148 (9%)
Query: 304 ALRTVGNIVT-GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
L + I + G+ + + + A + + +
Sbjct: 9 MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-PAPVEHQICPAVCVLMKL-SFDEEHR 66
Query: 363 QAVIEANIIAPLVYLLQ-----------HAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411
A+ E + + LLQ H +++ A A++N T G + +
Sbjct: 67 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126
Query: 412 GCIKPLCDLLVCPDPRIVTVCLEGLENI 439
GC++ L L + V L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 209 bits (532), Expect = 7e-62
Identities = 64/451 (14%), Positives = 134/451 (29%), Gaps = 72/451 (15%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
+P+ V++L D + Q A+ + + + V + G + K V LL S + +V++
Sbjct: 4 IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
A AL N+ S + + + ++ L + + T L N
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 237 FDQVRPALAALQHLIFS----------------SDEEVLTDACWALSYLSDGTNDKIQAV 280
+ + AL L + D EV +A L LS +
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Query: 281 IEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYK 340
+G+ L+ + + + + + + R + +N
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 341 KSIKKEACWTISNITAGSRSQIQA-------------VIEANIIAPLVYLLQHAEFEVKK 387
C++ + + + + ++ I + L+ ++ +
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Query: 388 EAS-WAISNATSGGTREQIQF----LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI--- 439
EA A+ N T+ + + + + LL + +V L N+
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361
Query: 440 --------------------------LKIGEADKEAGSTTANV------YSEMIDECDGL 467
+ A T N+ ++ L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421
Query: 468 DKIENL-QSHDNNEIYEKAVKLLERYWVEEE 497
+ I NL +S + + E A LL W +E
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 4e-26
Identities = 53/376 (14%), Positives = 117/376 (31%), Gaps = 47/376 (12%)
Query: 62 EANASIEKKLESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
N ++ I V + + N+ +Q + T L ++ ++E + A +P
Sbjct: 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT---GLLWNLSSTDELKEELIADALPVL 132
Query: 121 VEFL---------------DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ 165
+ + P++ F A L N++S + + G + +
Sbjct: 133 ADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA 192
Query: 166 LLGSASDDVR------EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS------ 213
+ + R E + L N++ + A + S
Sbjct: 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252
Query: 214 KLSMLRNATWTLSNFCRGKPP---APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270
K + N + P L + S + L AL L+
Sbjct: 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312
Query: 271 DGTNDK-----IQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN 325
++ P++ LL ++ V+ + N+ V+ N
Sbjct: 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGN 370
Query: 326 QGLPRLYQLLTQNYKKSIKKE-----ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH 380
Q P + +LLT + + E AC+T+ N+ A + ++++ ++ L +
Sbjct: 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430
Query: 381 AEFE-VKKEASWAISN 395
+ + A +S+
Sbjct: 431 SASPKAAEAARLLLSD 446
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 7e-16
Identities = 33/307 (10%), Positives = 76/307 (24%), Gaps = 22/307 (7%)
Query: 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR-PALAALQHLIFSSDEEV 258
G +P Q + + + C A + + L L+ S ++ V
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 259 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTGDDT 317
A AL L + V LL + + + + N+ + D+
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 318 QTQCVIDNQGLPRLYQLL---------------TQNYKKSIKKEACWTISNITAGSRSQI 362
+ + LP L + + + A + N+++ +
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422
+ +I L+ +Q+ + + + + L
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
Query: 423 CPDPRI-VTVCLEGLENILKIGEADKEAGSTTANVYS-EMIDECDGLDK-IENLQSHDNN 479
T C + + D N + D + + + +
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298
Query: 480 EIYEKAV 486
E
Sbjct: 299 ATLEACA 305
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 4e-14
Identities = 34/271 (12%), Positives = 82/271 (30%), Gaps = 31/271 (11%)
Query: 111 VIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA 170
+G++ + ++ ++ + + + + + R+ E + +
Sbjct: 181 RNYSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR-QLEYNAR 238
Query: 171 SDDVREQAVWALGNVAGD---------------SPSCRDLVLSHGALMPLLAQLNEHSKL 215
+ + + N + +P + A+ L + + K
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298
Query: 216 SMLRNATWTLSNFCRGKPPAPFDQVR------PALAALQHLIFSSDEEVLTDACWALSYL 269
+ L L N K + L + L+ S + +V+ LS +
Sbjct: 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358
Query: 270 SDGTNDKIQAVIEAGVCPRLVELLLHS------STTVLVPALRTVGNIVTGDDTQTQCVI 323
S + + V+ V P + LL S +L A TV N++ +
Sbjct: 359 S--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYF 416
Query: 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354
+ L + L + + A +S++
Sbjct: 417 SSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 2e-10
Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)
Query: 110 EVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS 169
++ +P+ L + + A L+N++ V+ + P+ +LL S
Sbjct: 326 IGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382
Query: 170 A------SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATW 223
S+D+ A + + N+ P S L ++ + A
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442
Query: 224 TLSNFCRGKP 233
LS+ K
Sbjct: 443 LLSDMWSSKE 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 3e-57
Identities = 67/399 (16%), Positives = 124/399 (31%), Gaps = 80/399 (20%)
Query: 21 DADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQG 80
D+ R RRE ++ + + R E +
Sbjct: 113 QPDDKRGRREIRVLHLLEQIRAYCETCWEW----------------QEAHEPGMDQDKNP 156
Query: 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFL----------DRHDLP 130
+ + A KL E + G + E L + H
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSI 214
Query: 131 QLQFEAAWALTNIASGTSEHTRVVI-EHGAVPKFVQLLGSASDDVREQAVWALGNVAGD- 188
L+ A ALTN+ G + + G + V L S S+D+++ L N++
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274
Query: 189 SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQ 248
+ + + G++ AL
Sbjct: 275 DVNSKKTLREVGSV---------------------------------------KALMEC- 294
Query: 249 HLIFSSDEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVP---- 303
+ E L AL LS T +K G LV L + S T +
Sbjct: 295 -ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 353
Query: 304 ---ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
LR V +++ ++ Q + +N L L Q L +++ +I AC T+ N++A +
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPK 412
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399
+A+ + ++ L L+ + ++ A+ N +
Sbjct: 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 6e-54
Identities = 72/435 (16%), Positives = 144/435 (33%), Gaps = 65/435 (14%)
Query: 62 EANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIR-AGVVPRF 120
+ + K+E + S++ + + + + + + R LL++ +R +G +P
Sbjct: 22 RLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQSGCLPLL 75
Query: 121 VEFLDRHDLPQ-----------LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL--- 166
++ L +D + A+ AL NI + R E + Q+
Sbjct: 76 IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAY 135
Query: 167 ---------------------LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPL 205
+ + + AV L ++ D R + G L +
Sbjct: 136 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAI 194
Query: 206 LAQL----------NEHSKLSMLRNATWTLSNFCRGKPP--APFDQVRPALAALQHLIFS 253
L N+H +++ R A L+N G A ++ + AL + S
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254
Query: 254 SDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHSSTT-VLVPALRTVGNI 311
E++ L LS + + + E G L+E L L L + N+
Sbjct: 255 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314
Query: 312 -VTGDDTQTQCVIDNQGLPRLYQLLT---QNYKKSIKKEACWTISNIT---AGSRSQIQA 364
+ + + L L LT Q +I + + N++ A + Q
Sbjct: 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374
Query: 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424
+ E N + L+ L+ + A + N ++ + + L G + L +L+
Sbjct: 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSK 433
Query: 425 DPRIVTVCLEGLENI 439
I L N+
Sbjct: 434 HKMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-34
Identities = 63/407 (15%), Positives = 126/407 (30%), Gaps = 63/407 (15%)
Query: 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL----- 167
+ +V + L HD + + + L + S + + + + G +P +QLL
Sbjct: 30 KVEMVYSLLSMLGTHD----KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDK 84
Query: 168 -------GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRN 220
S + R +A AL N+ P + L LL Q+ +
Sbjct: 85 DSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL-HLLEQIRAYC------E 137
Query: 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAV 280
W + + + E + A L LS + A+
Sbjct: 138 TCWEWQEAHEPGMDQDKNPMP-----------APVEHQICPAVCVLMKLSFDEEHR-HAM 185
Query: 281 IEAGVCPRLVELL-----------LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG-L 328
E G + ELL H S T+ A + N+ GD + +G +
Sbjct: 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245
Query: 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFE-VK 386
L L + +++ + N++ + + + E + L+ + E
Sbjct: 246 RALVAQLKSESED-LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304
Query: 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP----RIVTVCLEGLENILKI 442
K A+ N ++ T + G + L L I+ L N+ +
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364
Query: 443 GEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489
+++ + +++ E + L + + I A L
Sbjct: 365 IATNED--------HRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 4e-21
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 8/167 (4%)
Query: 74 IPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFL---DRHDL 129
+ ++++ L + + L + + G + V L + +
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347
Query: 130 PQLQFEAAWALTNIAS---GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
+ L N++S +H +++ E+ + +Q L S S + A L N++
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233
+P ++ + GA+ L L + + L N +P
Sbjct: 408 ARNPKDQEALWDMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 8e-14
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 108 IEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167
+ + + ++ L H + A L N+++ + + + GAV L+
Sbjct: 372 RQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430
Query: 168 GSASDDVREQAVWALGNVAGDSPS 191
S + + AL N+ + P+
Sbjct: 431 HSKHKMIAMGSAAALRNLMANRPA 454
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 193 bits (490), Expect = 9e-55
Identities = 73/456 (16%), Positives = 143/456 (31%), Gaps = 65/456 (14%)
Query: 99 LLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG 158
L S+ + P R +P + L L ++ AA L ++ + V +
Sbjct: 32 LDSLRKGGPPPPNWRQPELPEVIAML-GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVA-GDSPSCRDLVLSHGALMPLLAQLNEHSKLSM 217
+P V LL +V A AL N++ G + + + + L+ L + + +
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 218 LRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS------------------SDEEVL 259
T TL N + V AL AL + E VL
Sbjct: 151 TEVITGTLWNLSSHDSIKM-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209
Query: 260 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV----------- 308
T+ L +S ++ + + E + ++ + + V
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 309 ---------------------GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEA 347
N T + + + + LL ++ +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329
Query: 348 CWTISNITAGSRSQI----QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE 403
I N+ AG + A+ + ++ + LL + V K AS A+ N
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD---A 386
Query: 404 QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDE 463
+ + L+ + I L L E + ++ I E ++ + E
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEV-IAENLEAAKKLRE 443
Query: 464 CDGLDKIENLQSHDNNE--IYEKAVKLLERYWVEEE 497
G++K+ + N A +L+ W +E
Sbjct: 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 99.6 bits (247), Expect = 3e-22
Identities = 55/386 (14%), Positives = 107/386 (27%), Gaps = 68/386 (17%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
IP +V + + L A + + + VP V L + L
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL------------------GSASDDVR 175
L N++S + ++ I A+ + + V
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209
Query: 176 EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLS------MLRNATWTLSNFC 229
L NV+ + R + L+ L + + ++ N L N
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 230 RGKPPAPFDQVRPALAA---------------------------LQHLIFSSDEEVLTDA 262
R AA + L S +L +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329
Query: 263 CWALSYLSDGT----NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318
A+ L G A+ + + +LL + V+ A + N+ D +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV--DAR 387
Query: 319 TQCVIDNQGLPRLYQLLT-------QNYKKSIKKEACWTISNITAGSRSQIQAVIEANII 371
+ +I +P L + L N+ + TI+ + A + + + E I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447
Query: 372 APLVYLLQHAEFEVK--KEASWAISN 395
LV + + K + A+ +
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQT 473
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 92.7 bits (229), Expect = 4e-20
Identities = 54/315 (17%), Positives = 109/315 (34%), Gaps = 43/315 (13%)
Query: 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274
R + +L + +G PP P + +P L + ++ + V ++A L +L +
Sbjct: 22 AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80
Query: 275 DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG-LPRLYQ 333
V + P LV LL H V + A + NI G D + I N +P L +
Sbjct: 81 KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL--------------- 378
LL + + + T+ N+++ +++ V A + L +
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNEDC 198
Query: 379 ---QHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL------VCPDPRIV 429
V + + N +S + + + G + L ++ D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258
Query: 430 TVCLEGLENILKIGE------------ADKEAGSTTANVYS--EMIDECDGLDK-IENLQ 474
C+ L N+ A A +T + E++ + + + I L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318
Query: 475 SHDNNEIYEKAVKLL 489
I E + +
Sbjct: 319 ESKTPAILEASAGAI 333
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 3e-46
Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 3/236 (1%)
Query: 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDD 173
+ +P ++ Q + A L ++ G + L + +
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 174 VREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233
+R +A +G + + + ++ VL GAL LL L+ + ++ A + +S R +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 234 PAPFDQVR-PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292
+R + L + +++ + + L L G + + G+ +LV L
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217
Query: 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEAC 348
+ + L + ++VT + + + L +LL + + E
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLRHRCQLLQQHEEY 271
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 3e-38
Identities = 40/262 (15%), Positives = 95/262 (36%), Gaps = 5/262 (1%)
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+P ++D++ A L+ L + ++ +G+ + L + +
Sbjct: 39 QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
A + +G + V+ L +L +LL ++ +++ +A + IS + +
Sbjct: 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420
+ + + + L+ +Q ++K ++++ + N G E L S G ++ L L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVAL 217
Query: 421 LVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNE 480
+ L L +++ E++ L + Q + E
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ----QHEEYQE 273
Query: 481 IYEKAVKLLERYWVEEEDDEQN 502
E KLL+ + DD +
Sbjct: 274 ELEFCEKLLQTCFSSPADDSMD 295
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 6e-19
Identities = 28/190 (14%), Positives = 65/190 (34%), Gaps = 6/190 (3%)
Query: 64 NASIEKKLESIPSMVQGVL-SENSGLQLEATTQFRKLLSI-ERCPPIEEVIRAGVVPRFV 121
NA+ +L + +V L + +GL+ A E+V+ G + + +
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI--QEQVLGLGALRKLL 130
Query: 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWA 181
LDR ++ +A +A++ + + ++ + ++ ++ +
Sbjct: 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190
Query: 182 LGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241
L N+ P + + S G + L L + L + P + R
Sbjct: 191 LQNLLVGHPEHKGTLCSMGMV-QQLVALVRTEHSPFHEHVLGALCSLVTDFPQG-VRECR 248
Query: 242 PALAALQHLI 251
L+ L+
Sbjct: 249 EPELGLEELL 258
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-39
Identities = 57/443 (12%), Positives = 126/443 (28%), Gaps = 87/443 (19%)
Query: 99 LLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT------- 151
L+++ + + + ++ R + N+ + +
Sbjct: 405 YLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463
Query: 152 -------------------------RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
V+ G L + S + +E L V
Sbjct: 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246
G R V+ G + LL E ++ R+AT L+ P + +L
Sbjct: 524 GL-KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDV 581
Query: 247 LQHLIF----SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
++ L+ ++ AL+ L+ Q +I+ ++ L+ +
Sbjct: 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL-- 639
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
+ A + N+
Sbjct: 640 -----------------------------------------TRAAAQCLCNLVMSEDVIK 658
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422
+ + L L + + E + A++ TS + + L + L L+
Sbjct: 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718
Query: 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482
P P + + + N++ A +E +++++ GL ++ + E+
Sbjct: 719 NPSPAVQHRGIVIILNMI---NAGEEIAKKLFE--TDIMELLSGLGQLPDDTRAKAREVA 773
Query: 483 EKAVKLLERYWVEEEDDEQNIPD 505
+ + ERY + E D IPD
Sbjct: 774 TQCLAAAERYRIIERSDNAEIPD 796
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 4e-38
Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 26/361 (7%)
Query: 89 QLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148
A+ ++ + + + L D + + A+T + +G
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLNGPL 279
Query: 149 EH-TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLA 207
+ +VV G + + + + + + A L + + G + +L
Sbjct: 280 DVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDILK 336
Query: 208 QLNEHSKLSMLRNATWTLSNFCRGKPPAP-----FDQVRPALAALQHLIF---SSDEEVL 259
+L + A L D LA D+++
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396
Query: 260 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319
A L+YL+ K + + + L++L + + L + T N+ + Q
Sbjct: 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456
Query: 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379
LP + +L + K+ I +E + +I + I L L +
Sbjct: 457 M-------LPEMIELA-KFAKQHIPEEHEL---DDVDFINKRITVLANEGITTALCALAK 505
Query: 380 HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
++ + ++ G +E +V +G +K L + + + + L I
Sbjct: 506 TESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563
Query: 440 L 440
Sbjct: 564 G 564
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 40/335 (11%), Positives = 90/335 (26%), Gaps = 15/335 (4%)
Query: 64 NASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEF 123
+ ++ + + + E L R I + G+
Sbjct: 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR----------ITVLANEGITTALCAL 503
Query: 124 LDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALG 183
+ + Q A L + G E V++ G V +++ ++ + A AL
Sbjct: 504 A-KTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561
Query: 184 N--VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241
+ + S + PLL L + + L+N ++
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 242 -PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
++ +++ + + A L L + L L
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
+ I + + ++ + L N +++ I N+
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395
+ + E +I+ L L Q + K A
Sbjct: 742 IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-37
Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 20/214 (9%)
Query: 117 VPRFVEFLDR-HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
+ R V L+ H LP AA + + SE + V + + K +QLL ++DV+
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 176 EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235
AL N+ + + V + LL L + L + T L N
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 236 PFDQVRPALAALQHLIF----------------SSDEEVLTDACWALSYLSDGTNDKIQA 279
+ AL L I D ++ + L +S D +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188
Query: 280 VIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIV 312
+ G+ LV + + + N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 2e-19
Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 22/220 (10%)
Query: 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298
+ A++ L+ ++ A + + ++ + V + +L++LL +
Sbjct: 9 TLERAVSMLEA--DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS 358
V + N+V D+ V + G+PRL Q+L Q KK+ + N+++
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 359 RSQIQAVIEA------NIIAPLVYLLQ--------HAEFEVKKEASWAISNATSGGTREQ 404
+ + + EA NII P + +F++ + + N +S G +
Sbjct: 127 KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186
Query: 405 IQFLVSQGCIKPLCDLL------VCPDPRIVTVCLEGLEN 438
G I L + PD + C+ L N
Sbjct: 187 KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-09
Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 43/207 (20%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
I ++Q + +N +Q R L E EV VPR ++ L + + +
Sbjct: 54 ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
+ L N++S + + ++ A+ + +
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENI-------------------------- 144
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRP---ALAALQHL 250
++ G + N + N T L N +R + +L H
Sbjct: 145 -IIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR-KAMRRCDGLIDSLVHY 202
Query: 251 IFSSDEEVLTDA-------C--WALSY 268
+ + + D C LSY
Sbjct: 203 VRGTIADYQPDDKATENCVCILHNLSY 229
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 357 GSRSQIQAVIEANIIAPLVYLLQ--HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCI 414
GS + ++ +E V +L+ H A+ I + E + + I
Sbjct: 1 GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54
Query: 415 KPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDK-IENL 473
L LL + + L N++ +K + E +G+ + ++ L
Sbjct: 55 LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE-----------VAELNGVPRLLQVL 103
Query: 474 QSHDNNEIYEKAVKLL 489
+ + E ++ LL
Sbjct: 104 KQTRDLETKKQITGLL 119
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 2e-17
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 21/197 (10%)
Query: 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
++ + L + + L E A A +A E + +I P + +
Sbjct: 70 MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124
Query: 176 EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235
+AL +A +P ++ M +L+ N KL+ L NF
Sbjct: 125 INVSYALEEIAKANPMLMASIVR--DFMSMLSSKNREDKLTAL--------NFIEAMGEN 174
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
F V P L + +L+ DE V A AL +L+ + + VI + +E L
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228
Query: 296 SSTTVLVPALRTVGNIV 312
+S+ V + ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 9e-12
Identities = 35/236 (14%), Positives = 79/236 (33%), Gaps = 26/236 (11%)
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSML 218
+ K ++LL V + A+ + +A L L L + L + + +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLT 87
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278
+ + KP + V+ + L DE+ + +AL ++ +
Sbjct: 88 QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN 338
+++ + +L + + AL + + + N LPR+ LL +
Sbjct: 144 SIVRD-----FMSMLSSKNREDKLTALNFIEAMG-----ENSFKYVNPFLPRIINLL-HD 192
Query: 339 YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAIS 394
+ ++ A + ++ + + VI+ + L V K IS
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGIS 242
|
| >1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-12
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 12 RKKSYK-TGVDADEARRRREDNLVEIRKNKREDSLLKKRR 50
R +K G D+ E RRRR + VE+RK K++D +LK+R
Sbjct: 3 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 64.4 bits (155), Expect = 6e-11
Identities = 45/330 (13%), Positives = 111/330 (33%), Gaps = 29/330 (8%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLS----IERCPPIEEVIRAGVVPRFVEFLDRHDL 129
+ ++ +LS+ L+ ++ + ++ + + + R + + +
Sbjct: 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147
Query: 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189
+Q EA + ++ S V + + L S VR++ + ALG++
Sbjct: 148 VSVQLEALDIMADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203
Query: 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH 249
SC ++V + LL++L+++ +S R ++ R + + + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262
Query: 250 LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309
D+E+ A CP+ V + + + + L
Sbjct: 263 FCNVDDDELREYCIQAFESFVR-------------RCPKEVYPHVSTIINICLKYLTYDP 309
Query: 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKS------IKKEACWTISNITAGSRSQIQ 363
N D+ + + +D G Q Y +++ A + + +R ++
Sbjct: 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV-VSTRHEML 368
Query: 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
+ L+ + E VK + A
Sbjct: 369 PEFYKTVSPALISRFKEREENVKADVFHAY 398
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 44.7 bits (104), Expect = 8e-05
Identities = 46/368 (12%), Positives = 120/368 (32%), Gaps = 29/368 (7%)
Query: 23 DEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVL 82
+ L E+ R L ++ Q + + ++ + + V
Sbjct: 725 SSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVY 784
Query: 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTN 142
S+++ L + + + A V + + ++ A +L
Sbjct: 785 SQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGE 844
Query: 143 IASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGAL 202
+ ++ ++ ++ S S++V+ A +ALG+++ +
Sbjct: 845 VGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYALGSISVGNLP---------EY 891
Query: 203 MPLLAQL--NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLT 260
+P + Q ++ + +L ++ + + P+ V A L ++E
Sbjct: 892 LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKHCECAEEGTRN 949
Query: 261 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320
L K+ + + PRL L+ S+ + V ++ D Q
Sbjct: 950 VVAECLG--------KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTIS-DHPQPI 1000
Query: 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH 380
+ + + L ++++ A T ++ S I+ ++ + + P +Y
Sbjct: 1001 DPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSAAHNKPSLIRDLL--DTVLPHLYNETK 1057
Query: 381 AEFEVKKE 388
E+ +E
Sbjct: 1058 VRKELIRE 1065
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 7e-11
Identities = 70/476 (14%), Positives = 144/476 (30%), Gaps = 152/476 (31%)
Query: 74 IPSMVQGVLS----ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDL 129
+ M + +LS ++ + +A + +L E +V +FVE + R +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKFVEEVLRINY 91
Query: 130 PQLQFEAAWALTNIAS---GTSEHTRVVIE-----HGAVPKFVQLLGSASDDV-REQAVW 180
+ ++ I + S TR+ IE + F + +V R Q
Sbjct: 92 K-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYL 138
Query: 181 ALGNVA-GDSPSCRDLVLSHGALMP------LLAQ-LNEHS-KLSMLRNATW-TLSNFCR 230
L P+ +++++ G + + + + M W L N C
Sbjct: 139 KLRQALLELRPA-KNVLI-DG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-C- 192
Query: 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290
+ L LQ L++ D + SD + I+ I + + L
Sbjct: 193 -------NSPETVLEMLQKLLYQIDPN--------WTSRSDHS-SNIKLRIHS-IQAELR 235
Query: 291 ELLLHSS--TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEAC 348
LL +LV L V N + C I LLT +K
Sbjct: 236 RLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKI----------LLTTRFK-------- 275
Query: 349 WTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE--ASWAISNATSGGTREQIQ 406
+++ + + + ++ + L E K + R Q
Sbjct: 276 -QVTDFLSAATTTHISLDHHS------MTLTPDE---VKSLLLKYL-------DCR--PQ 316
Query: 407 FLVSQGC-IKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANV-------YS 458
L + P + + I E+ ++ +T N +
Sbjct: 317 DLPREVLTTNPR------------RLSI--------IAESIRDGLATWDNWKHVNCDKLT 356
Query: 459 EMIDECDGLDKIENLQSHDNNEIYEK-AV---------KLLERYWVE-EEDDEQNI 503
+I+ + L+ + +++++ +V LL W + + D +
Sbjct: 357 TIIESS-----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 85/566 (15%), Positives = 167/566 (29%), Gaps = 157/566 (27%)
Query: 8 RTEVRKKSYKTGVDADEARRRREDNLVEIRKN-KREDSLLKKRREGLILQSQPVTEANAS 66
+TE R+ S T + ++ R DN V + N R K R+ L L+ +P
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL-LELRP------- 149
Query: 67 IEKKLESIPSMVQGVLSENSG---LQLEATTQFRKL---------LSIERCPPIEEVIR- 113
K + ++ GVL SG + L+ ++ L+++ C E V+
Sbjct: 150 -AKNV-----LIDGVLG--SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 114 -----AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG 168
+ P + D +L+ + R +++ + +L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSI----------QAELRRLLKSKPYENCLLVL- 250
Query: 169 SASDDVREQAVWALGNVAGDSPSCRDLVLS---------------HGALMPLLAQLNEHS 213
+V+ W N+ SC+ L+ + H +L L
Sbjct: 251 ---LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 214 KLSMLRNATWTLSNF-------CRGKP-------------PAPFDQVR-PALAALQHLIF 252
S+L + P A +D + L +I
Sbjct: 303 VKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 253 SS----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308
SS + LS + I + + L+ V
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAH------IPTIL----LSLIWFDVIK------SDV 404
Query: 309 GNIVTGDDTQTQCVIDNQGLPRLYQL--LTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366
+V + +++ Q + + K ++ E + + +
Sbjct: 405 MVVV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY--ALHRSIVDHYNIPKTFD 460
Query: 367 EANIIAPLV--YLLQHAEFEVKKEASWAISNATSGGTREQI----QFLVSQGCIKPLCDL 420
++I P + Y H +K I + + +FL + I+
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVFLDFRFL--EQKIRHDSTA 513
Query: 421 LVCPDPRIVTVCLEGLENILK-IGEADKEAGSTTANVYSEMIDEC-DGLDKIEN------ 472
+ T L+ L+ I + D Y +++ D L KIE
Sbjct: 514 WNASGSILNT--LQQLKFYKPYICDND--------PKYERLVNAILDFLPKIEENLICSK 563
Query: 473 ----LQ---SHDNNEIYEKAVKLLER 491
L+ ++ I+E+A K ++R
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 9e-11
Identities = 43/326 (13%), Positives = 86/326 (26%), Gaps = 69/326 (21%)
Query: 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172
+ LD H+ + +A L AV ++ +
Sbjct: 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNY 68
Query: 173 DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232
R+ + LG + C D V + L + A + + C+
Sbjct: 69 IRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKN 122
Query: 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292
P V + V +A+S ++D P L+ L
Sbjct: 123 PIYSPKIVEQSQITAFD----KSTNVRRATAFAISVIND-----------KATIPLLINL 167
Query: 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352
L + V A + + ++L + ++ EA +S
Sbjct: 168 LKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLS 217
Query: 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQG 412
+ +++ L L+ V + A L +
Sbjct: 218 YR--KDKR---------VLSVLCDELKKN--TVYDDIIEAAGE------------LGDKT 252
Query: 413 CIKPLCDLLV-CPDPRIVTVCLEGLE 437
+ L +L D I+T ++ L+
Sbjct: 253 LLPVLDTMLYKFDDNEIITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 47/241 (19%)
Query: 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQ 131
+++ ++ +N + ++ ++C V
Sbjct: 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-------NVFNILNNMALNDKSAC 106
Query: 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191
++ A + + V + S +VR +A+ + +
Sbjct: 107 VRATAIESTAQRC-----KKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-- 159
Query: 192 CRDLVLSHGALMPLLAQLNEHSKLSMLR-NATWTLSNFCRGKPPAPFDQVRPALAALQHL 250
+ L+ L + + +R A + ++ +
Sbjct: 160 ---------TIPLLINLLKDPN--GDVRNWAAFAININKYDNS--------DIRDCFVEM 200
Query: 251 IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310
+ +EEV +A LSY D + V+ L + L ++ V + G
Sbjct: 201 LQDKNEEVRIEAIIGLSYRKD------KRVLSV-----LCDELKKNT--VYDDIIEAAGE 247
Query: 311 I 311
+
Sbjct: 248 L 248
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 34/173 (19%)
Query: 99 LLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG 158
+ S + + +V + ++ A+A++ I
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIND-----------KA 159
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSML 218
+P + LL + DVR A +A+ D+ RD + +L + +
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEML----QDKNEEVR 209
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271
A LS + + L+ L + V D A L D
Sbjct: 210 IEAIIGLSYR----------KDKRVLSVLCDEL--KKNTVYDDIIEAAGELGD 250
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 47/344 (13%), Positives = 84/344 (24%), Gaps = 88/344 (25%)
Query: 170 ASDDVREQAVWALGNVAGDSPSCRDLVLS----------HGAL-----------MPLLAQ 208
++ + +A G D + + + L +
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIE 61
Query: 209 LNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSY 268
+ L D V L + + V A + +
Sbjct: 62 FCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNM--ALNDKSACVRATAIESTAQ 117
Query: 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328
++E ST V + I D +
Sbjct: 118 RCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAISVIN-----------DKATI 161
Query: 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388
P L LL ++ ++ A + I+ + I V +LQ EV+ E
Sbjct: 162 PLLINLL-KDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIE 211
Query: 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKE 448
A +S + + LCD L + +E + DK
Sbjct: 212 AIIGLSY------------RKDKRVLSVLCDEL--KKNTVYDDIIEAAGEL-----GDKT 252
Query: 449 AGSTTANVYSEMIDECDGLDKIEN-LQSHDNNEIYEKAVKLLER 491
L ++ L D+NEI A+ L+R
Sbjct: 253 L-----------------LPVLDTMLYKFDDNEIITSAIDKLKR 279
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 4e-10
Identities = 39/364 (10%), Positives = 102/364 (28%), Gaps = 68/364 (18%)
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE 211
+ ++ + + + + S + ++Q V + N+ + + GA+ +L L
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLAN 509
Query: 212 HSKLS--MLRNATWTLSNFCRGKPPA-------PFDQVRPALAALQHLIFSSDEEVLTD- 261
+ + L+ P + + L D + D
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569
Query: 262 ---------ACWALSYL---SDGTNDKI--QAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
A AL+ L +++ V + L+L + + L
Sbjct: 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+ N+++ T N P+ +
Sbjct: 630 ISNMMSHPLT-IAAKFFNLENPQSLRNFN------------------------------- 657
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV--CPD 425
LV LLQ ++ E ++ + +N + + L + I+ + D
Sbjct: 658 -----ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDD 712
Query: 426 PRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKA 485
+ L + ++ + ++ + + +L+ D+ + A
Sbjct: 713 IELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALN----MSLKRGDSGPEFSAA 768
Query: 486 VKLL 489
+ ++
Sbjct: 769 IPVI 772
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 40/288 (13%), Positives = 83/288 (28%), Gaps = 18/288 (6%)
Query: 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSM 217
G F + + D + + L + A + R + + + LL + + +
Sbjct: 255 GLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENY--LQLLERSLNVEDVQI 312
Query: 218 LRNATWT-LSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDK 276
+F + + I + + AL+YLS + K
Sbjct: 313 YSALVLVKTWSFTKLTCINLKQLSE----IFINAISRRIVPKVEMSVEALAYLSLKASVK 368
Query: 277 IQAVIEAGVCPRLVELLLHSS-TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL 335
I L+ ++ T L L + N+ T +
Sbjct: 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX 428
Query: 336 TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395
K ++A + ++ +I+ L + + K++ I N
Sbjct: 429 XPAADKVGAEKA-----AKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYN 483
Query: 396 ATSGGTREQIQFLVSQGCIKPLCDLLVCPDP---RIVTVCLEGLENIL 440
T ++ I L QG +K + + L I + L +L
Sbjct: 484 ITR--SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 48/310 (15%), Positives = 93/310 (30%), Gaps = 26/310 (8%)
Query: 108 IEEVIRAGVVPRFVEFLDR---HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV 164
+ V R ++P + L H ++ L IA G + + +P +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406
Query: 165 QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224
Q L VR W L A S + LL ++ + +K + A
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465
Query: 225 LSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEA 283
+ + L L + L A+ L+D + +
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525
Query: 284 GVCPRLVELL--LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN--- 338
+ P L++ L L P L + ++ T + + R L+ +
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPV-YQRCVNLVQKTLAQ 584
Query: 339 -------------YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVY-LLQHAEFE 384
K A +S + G I+ ++ + I L+Y +Q E
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE 644
Query: 385 VKKEASWAIS 394
V++ + +
Sbjct: 645 VRQSSFALLG 654
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-08
Identities = 40/314 (12%), Positives = 96/314 (30%), Gaps = 28/314 (8%)
Query: 102 IERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161
E C ++P ++ L ++ W L+ A +
Sbjct: 387 AEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445
Query: 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNA 221
+ ++ + ++ V+E A A + ++ + +LV ++ L + L
Sbjct: 446 ELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLIL 503
Query: 222 TWTLSNFC-----RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDK 276
+ P + P L +++ +++ L LS ++
Sbjct: 504 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML-KDEDKDLFPLLECLSSVATALQSG 562
Query: 277 IQAVIEAGVCPRLVELLLHS-----------------STTVLVPALRTVGNIVTGDDTQT 319
E V R V L+ + ++ AL + + G
Sbjct: 563 FLPYCEP-VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 621
Query: 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379
+ ++ + L Q+ +++ + + ++T ++ I + + L L
Sbjct: 622 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLN 680
Query: 380 HAEFEVKKEASWAI 393
V A+WAI
Sbjct: 681 PEFISVCNNATWAI 694
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 6e-07
Identities = 65/419 (15%), Positives = 133/419 (31%), Gaps = 41/419 (9%)
Query: 53 LILQSQ-PVTEANASIEKKLESIPS----------MVQGVLSENSGLQLEATTQFRKLLS 101
L+ +SQ P T ++++KLE + ++ + SE+ + + + +
Sbjct: 18 LLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK 77
Query: 102 IERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161
+ + + + P ++ +T IAS +P
Sbjct: 78 -AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNW----PDLLP 131
Query: 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRD---LVLSHGALMPLLAQLNEHSKLSML 218
K LL S + E A AL + DS D L ++P Q +HS +
Sbjct: 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR 191
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278
+A ++ F + A + + L L + EV + C AL L + D++
Sbjct: 192 SHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251
Query: 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGD-DTQTQCVIDNQGLPRLYQLLTQ 337
+ + +++ V + A + + +P L +
Sbjct: 252 PHMHN-IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310
Query: 338 NYKKSIKKEAC-------------WTISNITAGSRSQIQAVIEANIIAPLVY----LLQH 380
+ I + W + +A + + V ++ ++ LL H
Sbjct: 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH 370
Query: 381 AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
E+ VK+ + G + I +L I L L + ++ L
Sbjct: 371 HEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRY 427
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 52/348 (14%), Positives = 106/348 (30%), Gaps = 37/348 (10%)
Query: 172 DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231
++R+ + AL +A RD +L H ++PLL +L H + + + L G
Sbjct: 335 WNLRKCSAAALDVLAN---VYRDELLPH--ILPLLKELLFHHEWVVKESGILVLGAIAEG 389
Query: 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 291
+ + L + V + CW LS + + + L++
Sbjct: 390 CMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449
Query: 292 LLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351
+L S+ V A + T+ + L L Y+ I
Sbjct: 450 RILDSNKRVQEAACSAFATLEEEACTELVPYLAYI-LDTLVFAF-SKYQHKNLLILYDAI 507
Query: 352 SNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFL--- 408
+ + ++ P + + + K+ + +S T Q FL
Sbjct: 508 GTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC 567
Query: 409 --VSQGCIKPLCDLLV-------------CPDPRIVTVCLEGLENILKIGEADKEAGSTT 453
V Q C+ + L PD + V L+ L + + + E
Sbjct: 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ---- 623
Query: 454 ANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQ 501
++ + L + E+ + + LL + + +
Sbjct: 624 ------LVARSNILTLMYQCMQDKMPEVRQSSFALLGD--LTKACFQH 663
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 30/304 (9%)
Query: 116 VVPRFVEFLD---RHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172
++ +EF++ D + + A A +I G + R H A+P + L+ S
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425
Query: 173 DVREQAVWALGNVAGDSPSCRDLVLSHGALMP-LLAQLNEHSKLSMLRNATWTLSNFCRG 231
V+E W +G +A D ++ L L +H K++ N +WT+ N
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQ 483
Query: 232 KPPAPFDQVRPALAA-LQHLIFS-----SDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285
A + A + LI + ++ A AL+ + + D + + +
Sbjct: 484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS-I 542
Query: 286 CPRLVELLLHSST---------------TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPR 330
+++ L + + + L + ++ + + V D +
Sbjct: 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGL 601
Query: 331 LYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390
++LL + I+ + + IS + A + +E L+ L + V A
Sbjct: 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAV 660
Query: 391 WAIS 394
I+
Sbjct: 661 GFIA 664
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 46/297 (15%), Positives = 92/297 (30%), Gaps = 23/297 (7%)
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGA--VPKFVQLLGSA--SDDVRE 176
V+ ++ + AL + ++ ++ + VQ S S VR
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
A+ AL + + + LM ++ + + + + A L
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259
Query: 237 FDQVRPALAALQHL-IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295
+ AL AL + S +++V + S + + D + + P
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319
Query: 296 SSTTVLVPALR---TVGNIVTGDDTQTQCVID------------NQGLPRLYQLLTQNYK 340
SS +VP L T N DD + N L + + + QN
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379
Query: 341 KS---IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAIS 394
++ A +I G + + ++ L+ +VK+ +W I
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 56/235 (23%)
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSML 218
V +++ L S VR A +ALG + + A+ PL+ L + +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDAWVR 62
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278
R A L A+ L + D V A AL + D +
Sbjct: 63 RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106
Query: 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN 338
+E L++ L V + A +G I GD+ + + L + L ++
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL-KD 149
Query: 339 YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
+++ A + I G + A + L + +K A +
Sbjct: 150 EDGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 53/219 (24%)
Query: 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIR------------------ 113
E + ++ + ++ ++ A K+ P+ + ++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73
Query: 114 -AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172
V ++ L D ++ AA AL I AV ++ L
Sbjct: 74 DERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW 121
Query: 173 DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232
VR A +ALG + + A+ PL+ L + ++A L
Sbjct: 122 FVRIAAAFALGEIGDER-----------AVEPLIKALK-DEDGWVRQSAADALGEI---- 165
Query: 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271
AA++ L + A L
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 45/195 (23%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
V +++ L ++ AA+AL I AV ++ L VR
Sbjct: 16 VEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 63
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
A ALG + + A+ PL+ L + + ++A L G A
Sbjct: 64 AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI--GDERA- 108
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296
V P + AL+ D V A +AL + D + +E L++ L
Sbjct: 109 ---VEPLIKALKD----EDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150
Query: 297 STTVLVPALRTVGNI 311
V A +G I
Sbjct: 151 DGWVRQSAADALGEI 165
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 39/263 (14%), Positives = 76/263 (28%), Gaps = 68/263 (25%)
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
+ + + + L + + R A + L GK
Sbjct: 2 RGSHHHHHHTDPE-----------KVEMYIKNL-QDDSYYVRRAAAYAL-----GKIGDE 44
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296
A+ L + D V A AL + D + +E L++ L
Sbjct: 45 -----RAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88
Query: 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
V A +G I GD+ + + L + L ++ A + + I
Sbjct: 89 DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI-- 134
Query: 357 GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416
G ++ +I+A L+ + V++ A+ A+ +I +
Sbjct: 135 GDERAVEPLIKA---------LKDEDGWVRQSAADAL---------GEIG---GERVRAA 173
Query: 417 LCDLLVCPDPRIVTVCLEGLENI 439
+ L V + LE
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 56/235 (23%)
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSML 218
V +++ L S VR A +ALG + + A+ PL+ L + +
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDAWVR 67
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278
R A L A+ L + D V A AL + D +
Sbjct: 68 RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 111
Query: 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN 338
+E L++ L V + A +G I GD+ + + L + L ++
Sbjct: 112 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL-KD 154
Query: 339 YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
+++ A + I G + A + L + +K A +
Sbjct: 155 EDGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYL 198
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 45/195 (23%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
V +++ L ++ AA+AL I AV ++ L VR
Sbjct: 21 VEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
A ALG + + A+ PL+ L + + ++A L G A
Sbjct: 69 AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI--GDERA- 113
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296
V P + AL+ D V A +AL + D +AV L++ L
Sbjct: 114 ---VEPLIKALKD----EDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155
Query: 297 STTVLVPALRTVGNI 311
V A +G I
Sbjct: 156 DGWVRQSAADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 39/270 (14%), Positives = 75/270 (27%), Gaps = 69/270 (25%)
Query: 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229
A + + A + D + + L + + R A + L
Sbjct: 1 AWSHPQFEK--AAAPLRADPE----------KVEMYIKNL-QDDSYYVRRAAAYALGKI- 46
Query: 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 289
A+ L + D V A AL + D + +E L
Sbjct: 47 ---------GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----L 86
Query: 290 VELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACW 349
++ L V A +G I GD+ + + L + L ++ A +
Sbjct: 87 IKALKDEDGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAF 134
Query: 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409
+ I + PL+ L+ + V++ A+ A+ +I
Sbjct: 135 ALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADAL---------GEIG--- 171
Query: 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
+ + L V + LE
Sbjct: 172 GERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
V ++ L + ++ AA+AL I AV ++ L VR
Sbjct: 113 AVEPLIKALK-DEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVR 160
Query: 176 EQAVWALGNVAGD 188
+ A ALG + G+
Sbjct: 161 QSAADALGEIGGE 173
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 8e-06
Identities = 55/337 (16%), Positives = 111/337 (32%), Gaps = 22/337 (6%)
Query: 106 PPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ 165
P + ++A + F P ++ AA L A ++ +P F
Sbjct: 155 PRVSSAVKAELRQYFRNLCSDDT-PMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210
Query: 166 LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTL 225
L D VR AV A N+A P + + + +MP L Q E +
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEAL--VMPTLRQAAEDKSWRVRYMVADKF 266
Query: 226 SNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAG 284
+ + P + A Q+L+ + EV A + + + D + VI +
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324
Query: 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIK 344
+ P + EL+ ++ V + + + + + L L K
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFLAQLKDECP 377
Query: 345 KEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQ 404
+ ISN+ + + +++ +V L + A++ V+ + E
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF 437
Query: 405 IQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 441
++ C+ L D I L+ +++
Sbjct: 438 FDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVE 470
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 8e-06
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 37/151 (24%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
+ + + ++ + + AL+ + A ++ L + +R
Sbjct: 14 LVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLR-NATWTLSNFCRGKPPA 235
A W +GN D A+ PL+ L + S +R A +L G
Sbjct: 61 AAAWIIGNF-QDER----------AVEPLIKLLEDDS--GFVRSGAARSLEQI--GGERV 105
Query: 236 PFDQVRPALAALQHLIFSSDEEVLTDACWAL 266
AA++ L + A L
Sbjct: 106 --------RAAMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSAS 171
+ +E L ++ +++ AAW + N AV ++LL S
Sbjct: 39 MGDEAFEPLLESLS-NEDWRIRGAAAWIIGNFQDER-----------AVEPLIKLLEDDS 86
Query: 172 DDVREQAVWALGNVAGDS 189
VR A +L + G+
Sbjct: 87 GFVRSGAARSLEQIGGER 104
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 34/142 (23%)
Query: 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSML 218
+ + + VR AL + + A PLL L + +
Sbjct: 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIR 59
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278
A W + NF Q A+ L L+ V + A +L + +
Sbjct: 60 GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103
Query: 279 AVIEAGVCPRLVELLLHSSTTV 300
V A + +L +
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVR 175
V ++ L+ ++ AA +L I +L + + R
Sbjct: 74 AVEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFAR 121
Query: 176 EQAVWALG 183
+ AV L
Sbjct: 122 KVAVNYLE 129
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 42/324 (12%), Positives = 92/324 (28%), Gaps = 67/324 (20%)
Query: 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR--VVIEHGAVPKFVQLLGSA 170
+ V + L+ D +++ LT++ + +++ V + + LL +
Sbjct: 120 QQENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178
Query: 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230
+ +R V L + + + + +V A LL + E
Sbjct: 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN---------------- 222
Query: 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290
S V+ D L L N E R+
Sbjct: 223 ----------------------SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK 260
Query: 291 ELLLHSS---------TTVLVPALRTVGNIVTGD-----DTQTQCVIDNQG-LPRLYQL- 334
T L L+ V +V+ + + Q + G L +L +
Sbjct: 261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320
Query: 335 LTQNYKKSIKKEACWTISNITAGSR------SQIQAVIE----ANIIAPLVYLLQHAEFE 384
+ I E T+S + G + + + A A ++ + + + F
Sbjct: 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFV 380
Query: 385 VKKEASWAISNATSGGTREQIQFL 408
++ + + Q + +
Sbjct: 381 LRCAVLYCFQCFLYKNQKGQGEIV 404
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 31/210 (14%), Positives = 62/210 (29%), Gaps = 32/210 (15%)
Query: 139 ALTNIASGTSEHTRVVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGDSPSCRDLV 196
+ N TS + + + G + + +L D+ + + + V +D
Sbjct: 292 SPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYF 351
Query: 197 LSHGALMP---------LLAQLNEHSKLSMLRNATWTLSNFCRGKP-----------PAP 236
S A L++ +NE + + F P+
Sbjct: 352 ASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST 411
Query: 237 FDQVRPALAALQHL---IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293
D ++A Q L +FS+D A AL++ +Q V+L
Sbjct: 412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHA-------LQENATQKEQLLRVQLA 464
Query: 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323
+ + + G QT+ +
Sbjct: 465 TSIGNPPVSLLQQCTNILSQGSKIQTRVGL 494
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 21/167 (12%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
+ + D L++ A+ + +GT ++ V + ++DDVR
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
AV ALG V + + ++ L++ + + L C GK
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647
Query: 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA 283
A+ L L + V A ALS + +K+ +
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 54/325 (16%), Positives = 107/325 (32%), Gaps = 32/325 (9%)
Query: 116 VVPRFVEFLD---RHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172
+VP + F+ ++ + + A A I G + A+P ++L+ S
Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 422
Query: 173 DVREQAVWALGNVAGDSPSCRDLVLSHGALMP-LLAQLNEHSKLSMLRNATWTLSNFCRG 231
VR+ A W +G + P + L+ L+ L+ + + N W S+
Sbjct: 423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPR--VASNVCWAFSSLAEA 480
Query: 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA-----GVC 286
D + + SS E ++ N+ + E+
Sbjct: 481 A-YEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539
Query: 287 PRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKE 346
+ + +T V++ L+ V ++ Q D L LL
Sbjct: 540 AKDCYPAVQKTTLVIMERLQQ----VLQMESHIQSTSDRIQFNDLQSLL----------- 584
Query: 347 ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE--FEVKKEASWAISNATSGGTREQ 404
C T+ N+ + Q I ++A L+ + Q V+++A A+S E
Sbjct: 585 -CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF 643
Query: 405 IQFLVSQGCIKPLCDLLVCPDPRIV 429
++++ + L L V
Sbjct: 644 LKYM--EAFKPFLGIGLKNYAEYQV 666
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.96 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.95 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.95 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.95 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.92 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.91 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.86 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.84 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.8 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.8 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.78 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.78 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.76 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.74 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.73 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.71 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.69 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.68 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.67 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.66 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.66 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.65 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.63 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.6 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.6 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.57 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.57 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.5 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.46 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.45 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.45 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.43 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.41 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.31 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.18 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 99.1 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 99.06 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.05 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.96 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.95 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.93 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.86 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.85 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.81 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.79 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.71 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.66 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.66 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.58 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.56 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.54 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.51 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.51 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.49 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 98.46 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.46 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.45 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 98.33 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.33 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.32 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.24 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.23 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.22 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 98.17 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.13 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 98.11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.08 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.83 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 97.77 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.75 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 97.74 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.65 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 97.5 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.47 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 97.4 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.38 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 97.38 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.35 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 97.19 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 97.07 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 96.94 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.8 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.58 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.57 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.56 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.54 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 95.98 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 95.96 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.86 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 95.69 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 95.68 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 95.4 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 95.3 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.98 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 94.72 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 94.53 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 94.26 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 94.2 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 93.87 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 93.69 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 93.6 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 92.55 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 91.88 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 90.93 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 88.79 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 88.08 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 87.65 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 87.27 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 85.85 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 85.22 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 85.15 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 84.45 | |
| 2p8q_B | 40 | Snurportin-1; heat repeat, IBB-domain, importin, k | 83.73 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 82.84 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 82.84 | |
| 1vdy_A | 140 | Hypothetical protein (RAFL09-17-B18); structural g | 82.36 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 82.17 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 81.92 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 80.85 |
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-78 Score=622.83 Aligned_cols=519 Identities=46% Similarity=0.759 Sum_probs=403.6
Q ss_pred CCCCCCC-CchHHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCch-hhh-hhHHHhhccHHH
Q 009700 1 MSLRPGS-RTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVT-EAN-ASIEKKLESIPS 76 (528)
Q Consensus 1 ~~~~~~~-~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~-~~~-~~~~~~~~~l~~ 76 (528)
|+.+++. .+++|+++||+ |.|++|+||||+++.++|||+||++++.|||+.....++..+. .+. .........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7888876 57899999997 8999999999999999999999999999999875433221111 111 111111246899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
+++.++|+|++.+..|+..+|++++.+.+++++.+++.|++|.|+++|..++++.++..|+|+|+|++.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999987666999999999999999999999999999
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch----hhHHHHHHHHHhhhhcCCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~----~~~~~~~a~~~L~~l~~~~ 232 (528)
.|++|.|+.+|.++++.+++.|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|+|++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995332 2457899999999999987
Q ss_pred -CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 233 -PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 233 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+........+++|.|+.++.+++++++..++|+|++++....+..+.++..|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5556667789999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
+.+++.....+++.|+++.|+.+|.++ ++.++++|+|+|+|++++++.+++.+++.|++|.|+.++.+++.+++.+|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999898999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHH
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIE 471 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 471 (528)
+|+|++.+++++++.++++.|++++|+++|.+.|++++..++++|.+|+..+++... .++++.+|+++||+++|+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~-----~~~~~~~iee~ggl~~ie 474 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE-----TEKLSIMIEECGGLDKIE 474 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC-----hHHHHHHHHHCCcHHHHH
Confidence 999999988999999999999999999999999999999999999999998876432 577899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCcccccC-CCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 472 NLQSHDNNEIYEKAVKLLERYWVEEEDDEQN-IPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 472 ~L~~~~~~~v~~~a~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
.||+|+|++||++|..||++||++|++||++ .|+.++++|.|+.+ +.++++|+|
T Consensus 475 ~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~f 529 (529)
T 3tpo_A 475 ALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 529 (529)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCC--CCCCCCCCC
Confidence 9999999999999999999999987776665 68888889999876 356789999
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-67 Score=539.06 Aligned_cols=491 Identities=46% Similarity=0.754 Sum_probs=393.4
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchh
Q 009700 29 REDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPI 108 (528)
Q Consensus 29 r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~ 108 (528)
|.....+.|+++.+.+....++...+.++....+........-..++.+++.++|+|++.++.|+..+|++++.+++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi 93 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93 (510)
T ss_dssp ---------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH
Confidence 34445667777777777777665543333221111111111113689999999999999999999999999999889999
Q ss_pred HHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 009700 109 EEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD 188 (528)
Q Consensus 109 ~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~ 188 (528)
+.+++.|++|.|+++|+.++++.+|.+|+|+|+||++++++.+..+++.|++|.|+.+|.++++++++.|+|+|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998766689999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCChHHHHHhhccch----hhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHH
Q 009700 189 SPSCRDLVLSHGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDAC 263 (528)
Q Consensus 189 ~~~~~~~~~~~g~i~~Ll~ll~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 263 (528)
++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999995332 2457899999999999987 5555666789999999999999999999999
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhH
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSI 343 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 343 (528)
|+|++++....+..+.+...|+++.|+.+|.+.+..++.+++++|+|++.+++..+..+++.|+++.|+.+|.++ +..+
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v 332 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI 332 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHH
Confidence 999999999988888899999999999999999999999999999999999999998999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC 423 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~ 423 (528)
++.|+|+|+|++++++.+++.+++.|++|.|+.++.+++.+++++|+|+|+|++.+++.+++.++++.|++++|+++|++
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcccccC-
Q 009700 424 PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQN- 502 (528)
Q Consensus 424 ~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~~~~~- 502 (528)
.|++++..++++|.+|+..+++... .++++.+|+++||+++|+.||+|+|++||++|..||++||++|++||++
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~-----~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~ 487 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGE-----TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNV 487 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccc-----hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 9999999999999999998876432 5678999999999999999999999999999999999999988776665
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 503 IPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
.|+.++++|.|+.+ +.++++|||
T Consensus 488 ~~~~~~~~~~~~~~--~~~~~~~~~ 510 (510)
T 3ul1_B 488 VPETTSEGFAFQVQ--DGAPGTFNF 510 (510)
T ss_dssp -------------------------
T ss_pred CCCCCccccccCCC--CCCCCCCCC
Confidence 68888889999866 457789999
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-65 Score=528.08 Aligned_cols=500 Identities=77% Similarity=1.203 Sum_probs=404.0
Q ss_pred CCCCCCCCchHHhhccCCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHhhccHHHHHHH
Q 009700 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQG 80 (528)
Q Consensus 1 ~~~~~~~~~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (528)
|++.+++++++|+++||++.+++|+|+||+++.++|||+||++++.|||+.....+..++...........+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG 82 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence 77777788999999999999999999999999999999999999999999743322211111111112233579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 009700 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAV 160 (528)
Q Consensus 81 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 160 (528)
|.++++..+..|++.|+++++....++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 99999999999999999999886557889999999999999999987658999999999999999889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
|.|+.+|.++++.+++.|+|+|++++.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999996677899999999999999998777777777
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
.+++|.|+.++.+++++++..++|+|++++...+...+.+++.|+++.|+.+|.+.++.++..|+++|++++.+.+...+
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999988888
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+++..++.+++.|++|.|+.++.++++.++..|+|+|+|++..+
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 89999999999999987657899999999999999999999999999999999999999999999999999999999987
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHH
Q 009700 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNE 480 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~ 480 (528)
+++...++++.|+++.|+.+|...+++++..++++|.+++..++........+.++|+..++++||+++|+.|++|++++
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~ 482 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 482 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence 88999999999999999999999999999999999999999887644322223677999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcccc
Q 009700 481 IYEKAVKLLERYWVEEEDDE 500 (528)
Q Consensus 481 v~~~a~~ii~~~~~~~~~~~ 500 (528)
++++|..++++||+.+++|+
T Consensus 483 v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 483 IYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHCCCccccc
Confidence 99999999999999876654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-61 Score=500.93 Aligned_cols=495 Identities=54% Similarity=0.826 Sum_probs=425.3
Q ss_pred CCCCCchHHhhccCC-C-CChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccc---cCCCCchh----hhhhHH-Hhhcc
Q 009700 4 RPGSRTEVRKKSYKT-G-VDADEARRRREDNLVEIRKNKREDSLLKKRREGLI---LQSQPVTE----ANASIE-KKLES 73 (528)
Q Consensus 4 ~~~~~~~~r~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~---~~~~~~~~----~~~~~~-~~~~~ 73 (528)
....+++.|++.||+ | .+++|+|+||++..++|||+||++++.|||+.... .+..+... ...... ...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (530)
T 1wa5_B 9 TSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQE 88 (530)
T ss_dssp ---CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CC
T ss_pred CCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHH
Confidence 344467889999998 8 89999999999999999999999999999987532 11100000 011111 12256
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++.|+++++..+..|+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999987656778889999999999999998733999999999999999988899999
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK- 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~- 232 (528)
+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+.+++.+...|++++|+.++ .+.+..++..++|+|++|+.+.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999988999999999999999999 5688899999999999999887
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+........+++|.|+.++.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.+.++.++..|+++|++++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 66666677899999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
.+.+...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++..++.+++.|++|.|+.++.++++.++..|+|+
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99888888889999999999999998 99999999999999999899999999999999999999999999999999999
Q ss_pred HHHhcCCCCH--HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 393 ISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 393 L~nl~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
|++++..+++ +...++.+.|+++.|+.++...++.++..++++|.+++..++..........++++..+.++||+++|
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L 486 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHH
Confidence 9999987666 88899999999999999999999999999999999999987653221011256789999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCcccc
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWVEEEDDE 500 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~~~~~~~ 500 (528)
+.|++|++++|+++|..+|++||..+++||
T Consensus 487 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~~ 516 (530)
T 1wa5_B 487 FNCQQNENDKIYEKAYKIIETYFGEEEDAV 516 (530)
T ss_dssp HGGGGCSCHHHHHHHHHHHHHHSSSCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCcccccc
Confidence 999999999999999999999999877653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-48 Score=393.30 Aligned_cols=426 Identities=60% Similarity=0.968 Sum_probs=385.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhc-CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.++.+++.++++++.++..|+..|+++++....++.+.+++. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999875446667778887 9999999999988349999999999999999888888
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|++|.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.++.++..+.+..++..++|+|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999999889999999999999999995457899999999999999987
Q ss_pred C-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 232 K-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 232 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
. +........+++|.|+.++.++++.++..++|+|.+++...++....+...|+++.|+.+|.+.++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555555668999999999999999999999999999999887788888889999999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
++.+.+...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.+++...+.+++.|++|.|+.++.++++.+|..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888787888999999999999998 999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
|+|+|++..++++...++.+.|+++.|+.+++.++++++..++++|.+++..++..........++|+..+.++||+++|
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence 99999998777888898999999999999999999999999999999999977653221111246799999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCccc
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWVEEEDD 499 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~~~~~~ 499 (528)
..|++|++.++++.|..+|++||++|++|
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999877654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=332.62 Aligned_cols=368 Identities=18% Similarity=0.179 Sum_probs=297.1
Q ss_pred HHhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchh-HHHHhcCcHHHHHHhhcCCCC-----------hHHHHH
Q 009700 68 EKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPI-EEVIRAGVVPRFVEFLDRHDL-----------PQLQFE 135 (528)
Q Consensus 68 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~-----------~~v~~~ 135 (528)
..+++.++.++.++.+.|+.. .++++++...+++. ..+++.|++|.|+++|...+. ++++.+
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp -----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 345678899999999888763 44555554444554 788999999999999997542 699999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChh
Q 009700 136 AAWALTNIASGTSEHTRVVIEHGAV----------PKFVQLLGSAS--DD-----VRE-------QAVWALGNVAGDSPS 191 (528)
Q Consensus 136 a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----i~~-------~a~~~L~nl~~~~~~ 191 (528)
|+|+|+||+.++++.++...+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e 180 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE 180 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence 9999999999999999998888888 66777776642 22 555 999999999766 78
Q ss_pred HHHHHHhcCChHHHHHhhcc----------chhhHHHHHHHHHhhhhcCCCCCCChhh--hHHHHHHHHHHhcCCCHHHH
Q 009700 192 CRDLVLSHGALMPLLAQLNE----------HSKLSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAALQHLIFSSDEEVL 259 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~ 259 (528)
+|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+++...... ..+++|.|+.+|.+++++++
T Consensus 181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence 99999999999999999932 2457899999999999998864332222 46779999999999999999
Q ss_pred HHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHhHhhcCCcchhHHHh-ccCChHHHHHHhc
Q 009700 260 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRTVGNIVTGDDTQTQCVI-DNQGLPRLYQLLT 336 (528)
Q Consensus 260 ~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~ 336 (528)
..++|+|.+|+.. +++....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence 9999999999985 567788899999999999975 557889999999999999985544333454 7899999999998
Q ss_pred ccCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 337 QNYKK----SIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 337 ~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
+. +. .+++.|+|+|.|++. ++++.++.+++.|++|.|+.+|.+++..++++|+|+|.|++.. ++++...+.
T Consensus 341 ~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~ 418 (458)
T 3nmz_A 341 YR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALW 418 (458)
T ss_dssp CC-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred CC-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 77 43 499999999999996 7899999999999999999999999999999999999999974 688899999
Q ss_pred HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 410 ~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+.|++++|+.+|.++++.+++.++++|.+++...+
T Consensus 419 ~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999997653
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=348.01 Aligned_cols=367 Identities=15% Similarity=0.129 Sum_probs=319.6
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh-
Q 009700 73 SIPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS- 148 (528)
Q Consensus 73 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~- 148 (528)
.++.++++|.++ |++.+..|++.|..+... .+....++ +.|++|.|+.+|++++ +.+++.|+|+|+|++.+++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367888888887 889999999999988654 34444555 5899999999999987 8999999999999998652
Q ss_pred ----------------------------hh---HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 149 ----------------------------EH---TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 149 ----------------------------~~---~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
.. .+.+++.|++|.|+.+|.++++.+++.|+|+|+||+.+ +.+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 12 26788999999999999999999999999999999976 55999999
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCCh--hhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCC
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPF--DQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~ 273 (528)
+.|++++|+.+| .+.+...++.|+|+|.+++... |...+ ....+++|.|+.+|.++ +...+..++|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 6667788999999999999764 22111 12357899999999865 3445678999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
++..+.+++.|+++.|+.+|.+.++.++.+|+++|+|++.+.+.+.+.+...|.++.|+.++.++ +..+|++|+|+|+|
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999997776554442379999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC---ChHHH
Q 009700 354 ITAGSRSQIQAVIE-ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP---DPRIV 429 (528)
Q Consensus 354 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~~~ 429 (528)
++++++..++.+++ .|++|.|+.++.+++.++++.|+|+|.|++.+ +.++..++.+.|++++|+.+++.. +++++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~ 770 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence 99988999999998 89999999999999999999999999999984 578899999999999999999765 78999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 009700 430 TVCLEGLENILKIGEAD 446 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~ 446 (528)
+.++++|.++++.+.-.
T Consensus 771 e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 771 EVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 99999999999887643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=328.12 Aligned_cols=365 Identities=17% Similarity=0.214 Sum_probs=311.7
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.+|.|+.+|.+++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++.++..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999988 899999999999999877778889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc--------C--------CCHHHH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF--------S--------SDEEVL 259 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~ 259 (528)
+.+.|++++|+.+|..+++.++++.++|+|+||+... ........+++|.|+.++. + .+.++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778999999999999999983 3333333499999999992 2 356778
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcC------------------
Q 009700 260 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTG------------------ 314 (528)
Q Consensus 260 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~------------------ 314 (528)
..++|+|.||+.. ++....+.+. |+++.|+.+|.+ .+..+...|+.+|.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 7788888887 999999999985 4567888898888888621
Q ss_pred --------------------------------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH--
Q 009700 315 --------------------------------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-- 360 (528)
Q Consensus 315 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 360 (528)
.+...+.+++.++++.++.+|.++.++.+++.|+|+|+|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1224456777888999999998775789999999999999986532
Q ss_pred -HH-HHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh------HHHHH
Q 009700 361 -QI-QAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP------RIVTV 431 (528)
Q Consensus 361 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~~~~~ 431 (528)
.+ +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+ . ....++..|+++.|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 23 4455 689999999999999999999999999999884 2 34556667899999999998754 68889
Q ss_pred HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCc
Q 009700 432 CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD-NNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 432 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~-~~~v~~~a~~ii~~~~~~~~ 497 (528)
++.+|.+++...+. +...+.++||++.|..|+.|+ ++++|+.|.++|.+||...+
T Consensus 397 ~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865432 577888999999999999999 99999999999999997543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=330.21 Aligned_cols=368 Identities=24% Similarity=0.362 Sum_probs=325.3
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.|++.|.+ +++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 679999999974 56889999999999998874 556778899999999999999998 999999999999999989999
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS-----DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
+..+++.|+++.|+.+|..++ ..+...++|+|++++.+...........++++.|+.++ .+++++++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998643 46788999999999987654444445567899999999 788899999999999
Q ss_pred hhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 226 SNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 226 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
++++.+.+... .....+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 99998753222 23347899999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCCh
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEF 383 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 383 (528)
+++|+|++.++..+...+++.|+++.|+.+|.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.++
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 9999999999999888999999999999999999 99999999999999986 678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC----CC-HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 384 EVKKEASWAISNATSG----GT-REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+++..++++|.|+... +. ......+.+.|+++.|..+..+++.++...+..+|.+++...
T Consensus 435 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999742 22 334455668899999999999999999999999998887543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=330.17 Aligned_cols=368 Identities=24% Similarity=0.365 Sum_probs=324.9
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.|+++|++ +++.+|..|+++|.++++.. .+..+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 679999999985 56899999999999999874 567788999999999999999988 999999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS-----DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
+..+.+.|+++.|+.+|..++ ..+...++|+|+|++.............++++.|+.++ .+.+.+++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998743 45788999999999977654444445567889999999 788899999999999
Q ss_pred hhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 226 SNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 226 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
++|+...+... .....+++|.|+.++.+.+..++..+++++++++..++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 99998753222 23347889999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCCh
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEF 383 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 383 (528)
+++|+|++.++..+.+.+++.|+++.|+.+|.++ +..+|++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.++
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999998999999999999999999 99999999999999987 678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC----CC-HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 384 EVKKEASWAISNATSG----GT-REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+++..++++|.|++.. +. ......+.+.|+++.|..+..+++.++...+...|.+++...
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999752 22 334455668899999999999999999999999998887543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=323.26 Aligned_cols=402 Identities=20% Similarity=0.217 Sum_probs=341.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.++++++.++..|++.|.+++... ......+.+.|++|.|+.+|.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 67999999999999999999999999998874 455667778999999999999987 8999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSA-SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+.+.|+++.|+.+|.+. ....+..++.+|.+++. ++..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999874 46778889999999986 456788999999999999999 66688999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L 308 (528)
..+.. ....+++|.|+.++.+.+++++..++|+|++++..+++....+.+.|+++.|+.+|.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 3457899999999999999999999999999999888888999999999999999976 3478999999999
Q ss_pred hHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++.+.+. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.+.. ....+.+.|++|.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999886543 345678899999999999988335999999999999988544 4477889999999999999999999
Q ss_pred HHHHHHHHHH--hcCCC------------------CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 386 KKEASWAISN--ATSGG------------------TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 386 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|++|+|+++| +..++ .++....+.+.|+++.|+.++.++++.++..+.++|.++....
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-- 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence 9998888887 33322 2344466789999999999999999999999999999976321
Q ss_pred chhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 446 DKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
++...+.+.||++.|..|++|+|++|+..|..++.++
T Consensus 492 ----------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ----------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2577888999999999999999999999999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=326.31 Aligned_cols=407 Identities=20% Similarity=0.230 Sum_probs=342.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.++++++.++..|+.+|.+++... ......+++.|++|.|+.+|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 57999999999999999999999999999875 556677788999999999999987 8888888999999998889999
Q ss_pred HHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSA-SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+.+.|+++.|+.+|.+. ...++..++.+|+|++. ++..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999884 47888999999999985 456889999999999999999 66689999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L 308 (528)
..+. .....+++|.|+.++.+.+++++..++|+|++|+..+++....+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7533 234568999999999999999999999999999998888888999999999999999873 378999999999
Q ss_pred hHhhcCCcc--h-hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDT--Q-TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++...+. . ...+.+.|+++.|+.+|.++.+..+++.|+|+|+|++.+... .+.+++.|++|.|+.++.+++.++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 2 234778899999999999873469999999999999886444 478889999999999999876666
Q ss_pred HHHHHHHHHH--hcCCC------------------CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 386 KKEASWAISN--ATSGG------------------TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 386 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|++|+|+++| +..++ +......+.+.|+++.|+.++.+.++.++..++.+|.++....
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-- 488 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 488 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--
Confidence 5555555544 33222 2344457779999999999999999999999999999987431
Q ss_pred chhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhcCCCc
Q 009700 446 DKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEI------------------YEK--AVKLLERYWVEEE 497 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v------------------~~~--a~~ii~~~~~~~~ 497 (528)
.+...+.+.|+++.|..+++++|++| |.. +..++..||..+.
T Consensus 489 ----------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred ----------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 25788899999999999999999999 444 6778888988764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=319.94 Aligned_cols=407 Identities=14% Similarity=0.127 Sum_probs=336.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh-hh
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS-EH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~ 150 (528)
+.++.++.++.|+++..+..|++++.+.++. ...++.+++.|+ |.|+.++++++ +.++..|+++|++++.... +.
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d~ 365 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDA 365 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTTT
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccCc
Confidence 6799999999999999999999999997665 567778888885 99999999877 8999999999999985221 22
Q ss_pred HHHHHhcC----ChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 151 TRVVIEHG----AVPKFVQLLGSA--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 151 ~~~i~~~g----~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
....+..| +++.++++|.++ ++++++.|+|+|++++.+.+.....+.+.|+++.|+.++ ++.+..++..++|+
T Consensus 366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~ 444 (810)
T 3now_A 366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTT 444 (810)
T ss_dssp SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHH
T ss_pred cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHH
Confidence 22223333 367788888887 889999999999999877664444455689999999999 67788999999999
Q ss_pred hhhhcCCCCCC---------------------------------ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 225 LSNFCRGKPPA---------------------------------PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 225 L~~l~~~~~~~---------------------------------~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
|.|++.+.+.. ......|++|.|+.++.++++.+++.++|+|+|++.
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~ 524 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG 524 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 99999864211 112235899999999999999999999999999996
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHH--HhccCChHHHHHHhcccCchhHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQC--VIDNQGLPRLYQLLTQNYKKSIKKEACW 349 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~--~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 349 (528)
. ++....+++.|+++.|+.+|.+.++..+..|+++|++++.+.+..... ....+++++|+.+|.++.+...+.+|+|
T Consensus 525 d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 525 L-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp S-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred C-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4 668889999999999999999999999999999999998754432100 0113689999999986523345679999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCChHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVS-QGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~ 428 (528)
+|+||+.++++..+.+++.|++|.|+.++.++++.+++.|+++|+|++.+ ++....+.+ .|.++.|+.++.+.+..+
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence 99999998888899999999999999999999999999999999999983 556666665 689999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 009700 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEE 496 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~ 496 (528)
+..++++|.++....+.. ....+...|+++.|..|..+++.+++..|.+.+.++...+
T Consensus 682 q~~Aa~ALanLt~~s~~~----------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 682 ATACAGALAIITSVSVKC----------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHHHHHHHHHHCHHH----------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHH----------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999854321 2334443899999999999999999999999999987643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=317.29 Aligned_cols=362 Identities=15% Similarity=0.197 Sum_probs=303.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.++.+|+++++..+..|+.+|++++... .+....+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++.+.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5799999999999999999999999987652 344558889999999999999887 99999999999999998899999
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--------c-------hhhH
Q 009700 153 VVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--------H-------SKLS 216 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--------~-------~~~~ 216 (528)
.+++.|++|.|+.+|. ++++++++.++|+|+|++.+ +..+..+.+ |++++|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 668888888 999999999931 1 2467
Q ss_pred HHHHHHHHhhhhcCCCCCCChhhh-H-HHHHHHHHHhcC------CCHHHHHHHHHHHHhhccCC---------------
Q 009700 217 MLRNATWTLSNFCRGKPPAPFDQV-R-PALAALQHLIFS------SDEEVLTDACWALSYLSDGT--------------- 273 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~--------------- 273 (528)
+++.++|+|+||+.+ +....... . |++|.|+.++.+ .+..+.+.+++++.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999987 33222233 3 899999999985 46678888999998886321
Q ss_pred -----------------------------------hHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcc
Q 009700 274 -----------------------------------NDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 274 -----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~ 317 (528)
+...+.+.+.++++.++.+|.+ .++.+++.|+++|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 0112234455678899999976 4688999999999999987754
Q ss_pred hh----HHH-hccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCCh------HHH
Q 009700 318 QT----QCV-IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF------EVK 386 (528)
Q Consensus 318 ~~----~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~ 386 (528)
.. +.+ .+.|+++.|+++|.++ +..++++|+|+|+|++.+ + ..+.++..|++|.|+++|..+++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 32 233 4689999999999999 999999999999999874 3 45566777899999999998743 688
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhh
Q 009700 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~ 443 (528)
..++++|.|++.+. +++...+.+.|+++.|+.++.++ ++++.+.+.++|.+++...
T Consensus 395 ~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 89999999999864 57788888999999999999999 9999999999999888543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=308.57 Aligned_cols=365 Identities=19% Similarity=0.201 Sum_probs=302.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Chhh
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG-TSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~ 150 (528)
..++.++++|.++++.++..|+++|++++... .++...+++.|+||.|+++|.+++ ++++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 46899999999999999999999999998753 667888899999999999999988 99999999999999996 6899
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-----------------cc
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-----------------EH 212 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-----------------~~ 212 (528)
+..+++.|+||.|+.+|.+ .+.++++.++++|+|++.. +.++..+.. +++++|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6789999999999999974 567777775 56999999872 12
Q ss_pred hhhHHHHHHHHHhhhhcCCCCCCChhh--hHHHHHHHHHHhcC------CCHHHHHHHHHHHHhhccCChHH--------
Q 009700 213 SKLSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAALQHLIFS------SDEEVLTDACWALSYLSDGTNDK-------- 276 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~-------- 276 (528)
.+..++.+++|+|.||+...+.....+ ..++++.|+.++++ .+...++.++|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357899999999999998754322222 25778899998874 46789999999999998652111
Q ss_pred -----------------HHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcCCcch----hHHHhccCChHHHHHH
Q 009700 277 -----------------IQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTGDDTQ----TQCVIDNQGLPRLYQL 334 (528)
Q Consensus 277 -----------------~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~----~~~~~~~~~l~~L~~l 334 (528)
++.+.+.++++.++.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111223345778899996 467899999999999999876322 2244567889999999
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--------ChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--------EFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
|.++ +..+++.|+|+|+||+.+.. .+..+..|++|.|+.+|.++ ..++...|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9998 99999999999999997543 23455789999999999876 357899999999999985 688899
Q ss_pred HHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHHhhh
Q 009700 407 FLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+.+.|+++.|+.++.+. .+.+.+.+.++|.++....+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 88999999999999986443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=308.72 Aligned_cols=367 Identities=25% Similarity=0.320 Sum_probs=322.6
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.+++.++++ ++.++..|++.|.+++... .+....+++.|++|.|+++|.+++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999988 8999999999999998753 445667788999999999999987 999999999999999988889
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
+..+++.|+++.|+.++.+ .++.++..++|+|++++.+. +..+... ..++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 4322222 267899999999 677889999999999999
Q ss_pred cCCCCC-CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHH
Q 009700 229 CRGKPP-APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 229 ~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~ 307 (528)
+...+. .......+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 987522 1222335789999999999999999999999999999988888888888999999999999999999999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
|++++.+++...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.+ +++.++.+++.|++|.|+.++.++++.++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 999999999999999974 78888889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH----------HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 387 KEASWAISNATSGGTR----------EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++..++..++.+|.+++...
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875422 24567778899999999999999999999999999998543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=311.49 Aligned_cols=367 Identities=25% Similarity=0.339 Sum_probs=326.3
Q ss_pred ccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.|++.|.+++ +.++..|+++|.++.... ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 57999999999877 999999999999998863 456778889999999999999987 999999999999999988889
Q ss_pred HHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 151 TRVVIEHGAVPKFVQLL-GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
+..+.+.|+++.|+.+| .+.++.++..++|+|++++...+... .....|+++.|+.++ .+.+..++..++|+|++++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 56889999999999999998764333 334578999999999 7788999999999999999
Q ss_pred CCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHH
Q 009700 230 RGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRT 307 (528)
Q Consensus 230 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~ 307 (528)
...+.. ......+++|.|+.+|.++++.++..++++|++++...+...+.+++.|+++.|+.+|.+. ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 774322 1223358899999999999999999999999999998888888899999999999999998 99999999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
|+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++.++++.++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888889999999999999998 999999999999999975 78999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH----------HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 387 KEASWAISNATSGGTR----------EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
..|+++|.+++..+.. .....+.+.|+++.+..+..+.++++...+..++.+++...
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999874322 35677778999999999999999999999999999887654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=311.45 Aligned_cols=368 Identities=26% Similarity=0.347 Sum_probs=325.9
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.|++.|.++ ++.++..|+++|.+++... ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 5799999999987 8999999999999998763 445677888999999999999887 999999999999999988899
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
+..+...|+++.|+.+|.+.++.++..++|+|++++... +. .......++++.|+.++ .+.++.++..++|+|.+|+
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ-PDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC-CCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC-CcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999765 33 23445678999999999 6778999999999999999
Q ss_pred CCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 230 RGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 230 ~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
...+.... ....+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87532222 22258899999999999999999999999999998888888889999999999999999999999999999
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SR--SQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+ +..+.+++.|++|.|+.++.+.++.+
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 999998888888888999999999999988 999999999999999874 45 78888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCH----------HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 386 KKEASWAISNATSGGTR----------EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..|+++|.+++..+.. .....+.+.|+++.|..++.++++++...+..+|.+++...+
T Consensus 445 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 99999999999874322 245677889999999999999999999999999999886543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=309.62 Aligned_cols=393 Identities=19% Similarity=0.213 Sum_probs=335.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.|+++++.++..|+++|.+++... ......+.+.|++|.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 57899999999999999999999999998874 455666778999999999999877 8999999999999998889999
Q ss_pred HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+.+.|+++.|+.+|.+.+ ...+..++.+|.+++.. +..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998854 56777899999999964 55788889999999999999 66678899999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-C-hhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-S-TTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~al~~L 308 (528)
..+. .....+++|.|+.++.+.+++++..++|+|++|+...++....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 233478999999999999999999999999999999888888999999999999999863 3 38999999999
Q ss_pred hHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++..... ....+...++++.|+.+|.++..+.+++.|+|+|+|++.+. .....+.+.|++|.|+.+|.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 13467788999999999998833599999999999998854 44577889999999999998765444
Q ss_pred ----------------------HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 386 ----------------------KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ----------------------~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+..++.+|++++. ++.....+.+.|+++.|+.+|.+.++.++..++.+|.++....
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 624 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 4455666666664 3555566789999999999999999999999999999987321
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHH
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKA 485 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a 485 (528)
.+...|.+.||++.|..|+++++++|+..|
T Consensus 625 ------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 625 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred ------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 257888999999999999999999996553
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=298.12 Aligned_cols=368 Identities=18% Similarity=0.204 Sum_probs=306.2
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD-SP 190 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~ 190 (528)
...+.+|.|+.+|.+++ +++|..|+++|.+++.++++.+..+++.|+||.|+.+|.++++.+++.|+|+|.||+.. ++
T Consensus 45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34678999999999988 99999999999999998999999999999999999999999999999999999999985 68
Q ss_pred hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc------------------
Q 009700 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF------------------ 252 (528)
Q Consensus 191 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------------------ 252 (528)
.++..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|+.++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 899999999999999999955567889999999999999864 3334444678999998761
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcCCc---------
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTGDD--------- 316 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~--------- 316 (528)
..+++++..+.++|.||+...++..+.+.+. |+++.|+.++.+ .+....+.|+++|.|++....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2368999999999999999887777777775 677899999874 466789999999999986521
Q ss_pred ----------------chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCcHHHHHH
Q 009700 317 ----------------TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR---SQIQAVI-EANIIAPLVY 376 (528)
Q Consensus 317 ----------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~ 376 (528)
...+.+.+.++++.++.+|..+.++.+++.|+|+|.||+++.. ..++..+ +.+++|.|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 1122334456677889999654489999999999999998652 2334344 5788999999
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--------ChHHHHHHHHHHHHHHHhhhhchh
Q 009700 377 LLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--------DPRIVTVCLEGLENILKIGEADKE 448 (528)
Q Consensus 377 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~~~~~~l~~l~~i~~~~~~~~~ 448 (528)
+|.+++..++..|+|+|.|++.+... +.++..|+++.|+.+|.+. ..+++..++.+|.+++...+.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~--- 436 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE--- 436 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH---
Confidence 99999999999999999999986432 2344778999999999876 357888899999999866543
Q ss_pred ccCCcchhhHHHhhhcccHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC
Q 009700 449 AGSTTANVYSEMIDECDGLDKIENLQSHD--NNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 449 ~~~~~~~~~~~~l~~~g~~~~l~~L~~~~--~~~v~~~a~~ii~~~~~~ 495 (528)
....+.+.||++.|..|..+. .+.+.+.|..++.+++..
T Consensus 437 --------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 437 --------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp --------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 255677999999999998775 899999999999988764
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=290.43 Aligned_cols=328 Identities=18% Similarity=0.179 Sum_probs=276.8
Q ss_pred hhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcH----------HHHHHhhcCC
Q 009700 70 KLESIPSMVQGVLSE------------NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVV----------PRFVEFLDRH 127 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i----------~~Lv~lL~~~ 127 (528)
+-+.+|.|+++|+.. ++++++.|+++|.++++.. .+..+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 347899999999963 3699999999999999986 5555666677777 7778888765
Q ss_pred C-ChH-----HHH-------HHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 009700 128 D-LPQ-----LQF-------EAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-----------ASDDVREQAVWALG 183 (528)
Q Consensus 128 ~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~ 183 (528)
. ..+ ++. +|+|+|.|++. ++++++.+++.|++++|+.+|.. .++.++..|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 444 99999999977 69999999999999999999942 34779999999999
Q ss_pred HhhCCChhHHHHHHh-cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CC-CChhhhHHHHHHHHHHh-cCCCHHHH
Q 009700 184 NVAGDSPSCRDLVLS-HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PP-APFDQVRPALAALQHLI-FSSDEEVL 259 (528)
Q Consensus 184 nl~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~-~~~~~~~~~l~~L~~ll-~~~d~~v~ 259 (528)
|+|.+.+..+..+.. .|++++|+.+| .+++.+++..++|+|.||+... +. .......|++|.|+.+| .+.+..++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 999888777777654 56699999999 6788999999999999999852 21 22233478999999975 56789999
Q ss_pred HHHHHHHHhhccCChHHHHHHH-HhCcHHHHHHHhcCCCh----hhHHHHHHHHhHhhc---CCcchhHHHhccCChHHH
Q 009700 260 TDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHSST----TVLVPALRTVGNIVT---GDDTQTQCVIDNQGLPRL 331 (528)
Q Consensus 260 ~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L 331 (528)
+.++.+|++|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. +++...+.+.+.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999985555555565 68999999999998654 489999999999997 678888889999999999
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 332 YQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 332 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
+.+|.++ +..++++|+|+|+|++.+++++++.+++.|++|.|+.++.+++..+++.|+|+|.|++.+.+
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999998 99999999999999998899999999999999999999999999999999999999998653
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=295.28 Aligned_cols=403 Identities=17% Similarity=0.153 Sum_probs=336.0
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.+++.|.+ +++.++..|+..|+++... ..+...+.+.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 4899999999999998665 457788889999999999999988 999999999999999977778
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+.+.|++|.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.++.++........+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999666667788889999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
.+.........++++.|+.++.+.+++++..++|++.+++...+... ...++++.|+.++.+.++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64333333346899999999999999999999999999998654221 123689999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHcCcHHHHHHHHccCC-hHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRS---QIQAVIEANIIAPLVYLLQHAE-FEV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 385 (528)
++..++.....+.+.|+++.|+.+|.+.. ++.++..|+++|+|++.+++. ....+.+.|++|.|+.++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 99988777888999999999999998641 479999999999999875433 4567778999999999999886 599
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH----------------------HHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN----------------------ILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~----------------------i~~~~ 443 (528)
+..|+|+|+|++.+. +....+.+.|+++.|+.++.+.+++++..+.+++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999843 334678899999999999987777776655555544 33211
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.....+.+.|+++.|..+..+++++++..|...+.++..
T Consensus 451 ------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 ------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred ------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 124557789999999999999999999999999888754
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=292.73 Aligned_cols=403 Identities=18% Similarity=0.173 Sum_probs=340.3
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.+++.|.++ ++.++..|+..|+++... ......+.+.|++|.|+.+|.+++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 3588999999864 899999999999987665 457788889999999999999988 999999999999999977778
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999988888999999999999999999666667888999999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6443333444689999999999999999999999999999764321 1112689999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCcHHHHHHHHccCC-hHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-KSIKKEACWTISNITAGSR--SQIQ-AVIEANIIAPLVYLLQHAE-FEV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v 385 (528)
++...+...+.+.+.|+++.|+.+|.+..+ +.++..|+++|+||+...+ ...+ .+++.|++|.|+++|.+.+ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999887778888999999999999987523 7999999999999987433 2333 4678999999999999875 799
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~~l~~l~~i~~~~ 443 (528)
++.|+|+|+|++.+. +....+.+.|+++.|+.++...+ .+++..++.+|.+++...
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 33477889999999999997643 345667777777777543
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
. ....+.+.|+++.|..+..+++++++..|...+.++..
T Consensus 448 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 24567789999999999999999999999988877654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=295.10 Aligned_cols=402 Identities=17% Similarity=0.176 Sum_probs=337.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.|++.|.+ .++.++..|+.+|+++... ..+...+.+.|++|.|+.+|++++ +.++..|+++|.+++..++..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 358899999985 4899999999999997654 455778888999999999999988 999999999999999977788
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888999999999999999999655566677889999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5433333334788999999999999999999999999999765321 1123589999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCcHHHHHHHHccCCh-HH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-KSIKKEACWTISNITAGSRS---QIQAVIEANIIAPLVYLLQHAEF-EV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v 385 (528)
++.+.+.....+.+.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...|++|.|+.+|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888778888999999999999987423 38999999999999875433 23466789999999999998874 99
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~~l~~l~~i~~~~ 443 (528)
++.|+|+|+|++.+ ++....+.+.|+++.|+.+|.+.+ .+++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999983 444578889999999999997543 345666777777776321
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
. ....+.+.|+++.|..+..+++++++..|...+.++.
T Consensus 584 -~-----------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 -H-----------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp -H-----------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -h-----------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 3456778999999999999999999999988877664
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=250.52 Aligned_cols=273 Identities=18% Similarity=0.165 Sum_probs=237.7
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc----------chhhHHHHHHHHHhhhhcCCCCCCChhh
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE----------HSKLSMLRNATWTLSNFCRGKPPAPFDQ 239 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 239 (528)
+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+++......
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456667899999999988 6799999999999999999942 2357899999999999998864233322
Q ss_pred --hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHhHhhcCC
Q 009700 240 --VRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 240 --~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~~~~ 315 (528)
..+++|.|+.+|.+++++++..++|+|.+|+.. +++....+.+.|+++.|+.+| .+.+..++..|+++|+|++..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 367799999999999999999999999999985 566788889999999999975 6678899999999999999866
Q ss_pred cchhHHHh-ccCChHHHHHHhcccCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHH
Q 009700 316 DTQTQCVI-DNQGLPRLYQLLTQNYKK----SIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 316 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 387 (528)
+.....+. ..|+++.|+.+|.++ ++ .+++.|+|+|.|++. ++++.++.+.+.|++|.|+.+|.+++..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 55444455 789999999999876 43 499999999999997 7899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 388 EASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+|+|+|.|++.. ++++...+.+.|+++.|+.++.++++.+++.++++|.+++...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999874 678899999999999999999999999999999999999987544
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=253.81 Aligned_cols=270 Identities=20% Similarity=0.183 Sum_probs=234.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhHHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-----------ASDDVREQAVWALGNVAGDSPSCRDLVLS 198 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~ 198 (528)
...+.+|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.++..|+|+|.|+|.+.+..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556689999999998 58999999999999999999942 34789999999999999888777777754
Q ss_pred -cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CC-CChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCh
Q 009700 199 -HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PP-APFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTN 274 (528)
Q Consensus 199 -~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~-~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~ 274 (528)
.|++++|+.+| .+++++++..++|+|.||+... +. .......+++|.|+.+| .+.+.++++.++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 7888999999999999999852 22 22233478999999974 66789999999999999998666
Q ss_pred HHHHHHH-HhCcHHHHHHHhcCCCh----hhHHHHHHHHhHhhc---CCcchhHHHhccCChHHHHHHhcccCchhHHHH
Q 009700 275 DKIQAVI-EAGVCPRLVELLLHSST----TVLVPALRTVGNIVT---GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKE 346 (528)
Q Consensus 275 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 346 (528)
+....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++...+.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5555666 68999999999988654 489999999999997 6777888899999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 347 ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 347 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
|+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+|+|.|++.+.+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988999999999999999999999999999999999999999997543
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=220.53 Aligned_cols=240 Identities=29% Similarity=0.434 Sum_probs=222.0
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
|.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56999999999988 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.+.+.|+++.++.++ .++++.++..++|+|.+++...+.. ......++++.|+.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999754322 22334689999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcC
Q 009700 354 ITAG 357 (528)
Q Consensus 354 l~~~ 357 (528)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=221.94 Aligned_cols=235 Identities=16% Similarity=0.171 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHH-HhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
.+-+..|+..|.+++...+ +...+...|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567788899999998644 6677888999999999 9999999999999999999999999888899999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCI 414 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 414 (528)
|.++.+..+++.|+|+|+|++.+++...+.+.+.|++|.|+.+|.++++.++..|+|+|++++.+ +++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999999999998999999999999999999999999999999999986 57888999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 009700 415 KPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD-NNEIYEKAVKLLERYW 493 (528)
Q Consensus 415 ~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~-~~~v~~~a~~ii~~~~ 493 (528)
+.|+.+|.+++++++..++.+|.+++...+..........+.+..++++ .++.|+.++ +.++|++|..|+++||
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999987554322111112446777764 477888776 8999999999999999
Q ss_pred CCCc
Q 009700 494 VEEE 497 (528)
Q Consensus 494 ~~~~ 497 (528)
++++
T Consensus 287 ~~~~ 290 (296)
T 1xqr_A 287 SSPA 290 (296)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=217.79 Aligned_cols=241 Identities=29% Similarity=0.440 Sum_probs=222.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC-CC
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-AP 236 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 236 (528)
|.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.|+.++ .+++..++..++|+|.+++...+. ..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5789999999999999999999999999999888899999999999999999 677899999999999999987532 22
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
.....++++.|+.++.+++++++..++|+|.+++...++....+.+.|+++.|+.++.++++.++..++++|++++.+.+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 33346899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 317 TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 317 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
...+.+.+.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+.+.+.|+++.|++++.++++.++..|+++|.|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8777889999999999999988 999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009700 397 TSGG 400 (528)
Q Consensus 397 ~~~~ 400 (528)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=221.21 Aligned_cols=239 Identities=34% Similarity=0.526 Sum_probs=219.6
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
...+.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45899999999998 89999999999887776778888899999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.+.+.|+++.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886433 33445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 009700 354 ITA 356 (528)
Q Consensus 354 l~~ 356 (528)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=216.99 Aligned_cols=239 Identities=36% Similarity=0.535 Sum_probs=217.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
..++.+++.|++++++++..|++.|+++++.. .+....+++.|++|.|+++|.+++ +.++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 35789999999999999999999999988873 677888999999999999999988 9999999999999999899999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+++..++..++|+|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775548889999999999999 677899999999999999987
Q ss_pred CCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 232 KPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 232 ~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
.+... .....+++|.|+.++.++++.++..++++|++++...++....+.+.|+++.|+.++.+.++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 53222 22337889999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 009700 311 IVT 313 (528)
Q Consensus 311 l~~ 313 (528)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=219.78 Aligned_cols=321 Identities=10% Similarity=0.119 Sum_probs=256.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh---
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE--- 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--- 149 (528)
.+.+++.+.+++...+..|+..|..+... ....+.+. +.|+++.|+++++...+..+.+.++.+|.|++...+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 56677788887766788899999977543 34444454 4677999999999633378999999999999984321
Q ss_pred -----------------------------------hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 150 -----------------------------------HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 150 -----------------------------------~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +.+|.
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~ 492 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIP 492 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHH
Confidence 345677899999999999999999999999999999976 66899
Q ss_pred HHHhcCChHHHHHhhccchhh--HHHHHHHHHhhhhcCCC-CCCChh--hhHHHHHHHHHHhcC-CCH------------
Q 009700 195 LVLSHGALMPLLAQLNEHSKL--SMLRNATWTLSNFCRGK-PPAPFD--QVRPALAALQHLIFS-SDE------------ 256 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~~--~~~~~l~~L~~ll~~-~d~------------ 256 (528)
.+.+.|++++|+.++....+. ..+..|+++|.+++... |...+. ...+++|.|+.+|.. ++.
T Consensus 493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence 999999999999999554433 28899999999998543 221110 113899999999983 211
Q ss_pred -HHHHHHHHHHHhhccCCh----HHHHHHHHh-CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccC----
Q 009700 257 -EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ---- 326 (528)
Q Consensus 257 -~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~---- 326 (528)
--...|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.+
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchh
Confidence 126789999999999862 334667774 8999999999999999999999999999985543222344322
Q ss_pred --ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CcHHHHHHHHcc--CChHHHHHHHHHHHHhcC
Q 009700 327 --GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEA-NIIAPLVYLLQH--AEFEVKKEASWAISNATS 398 (528)
Q Consensus 327 --~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 398 (528)
-++.|+.++..+ +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.. ++..++..++.++.|++.
T Consensus 653 ~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 653 LRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 377899999888 99999999999999988788888888876 799999999999 899999999999999996
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=208.41 Aligned_cols=398 Identities=12% Similarity=0.096 Sum_probs=298.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
.+.+...+.++.......++..+-+.++. +..++..+..+.++.|.+++++ ..++..|+-+|+.+..........
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~s 331 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCIN 331 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCC
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCc
Confidence 56666666554433344444445555565 4566777778889999999964 478999999999988733221111
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH-hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL-SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
+. ...+.+.++|..++.+-+..|++.|+.++.+.. .|+.+. +.+++..|+.++....+.++...++.+|.|++...
T Consensus 332 i~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 332 LK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred HH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 11 255778888888776679999999999976654 666655 45669999999954567889999999999999865
Q ss_pred CCCCh---------------------------------------hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 233 PPAPF---------------------------------------DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 233 ~~~~~---------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
+.... ....|++|.|+.++.++++.++..++|+|.+++..
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d- 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS- 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 32100 01257899999999999999999999999999966
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChh---hHHHHHHHHhHhhcCCcchhHHHhc----cCChHHHHHHhcc-cCch----
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTT---VLVPALRTVGNIVTGDDTQTQCVID----NQGLPRLYQLLTQ-NYKK---- 341 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~al~~L~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---- 341 (528)
.+....+++.|+++.|+.+|.+.... .+..|+.+|++++...+... ++. .|++++|+.+|.. +...
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccc
Confidence 56788899999999999999887544 79999999999985443221 111 3889999999983 2111
Q ss_pred --------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH-HH
Q 009700 342 --------SIKKEACWTISNITAGS----RSQIQAVIEA-NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI-QF 407 (528)
Q Consensus 342 --------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~ 407 (528)
.-+.+|+.+|.||+..+ .+..+.++.. |++|.|..+|.+++..+|+.|+++++|++.. ++.+ ..
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k 643 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAK 643 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGG
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHH
Confidence 12789999999999865 3446778885 9999999999999999999999999999983 3432 23
Q ss_pred HHHC------CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC--CCH
Q 009700 408 LVSQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH--DNN 479 (528)
Q Consensus 408 l~~~------~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~--~~~ 479 (528)
+... +.++.|+.+++.+|.+++..+.++|.++....+.. ....++..+|++.+..+... +++
T Consensus 644 ~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~~ 713 (778)
T 3opb_A 644 FFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDDI 713 (778)
T ss_dssp TSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTCH
T ss_pred HHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCCH
Confidence 3211 23889999999999999999999999987554432 13444445889998888766 899
Q ss_pred HHHHHHHHHHHHhcC
Q 009700 480 EIYEKAVKLLERYWV 494 (528)
Q Consensus 480 ~v~~~a~~ii~~~~~ 494 (528)
+++.++..++.+++.
T Consensus 714 ~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 714 ELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=185.55 Aligned_cols=198 Identities=38% Similarity=0.543 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
.+..+.|..++.++|++++..++|+|.+++..+++....+++.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 56788999999999999999999999999988888889999999999999999999999999999999999998888888
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+.+++.|++|.|+.++.++++.++..|+++|.|++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998999999999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHH
Q 009700 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~ 440 (528)
+++....+.+.|+++.|+.++.+++++++..++++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677788889999999999999999999999999999875
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=185.19 Aligned_cols=199 Identities=33% Similarity=0.488 Sum_probs=181.4
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 192 (528)
..|..|.|+.+|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999988 999999999999999889999999999999999999999999999999999999999888889
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
+..+.+.|+++.|+.+| .+++..++..++|+|.+++...+... .....+++|.|+.++.+++++++..++|+|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 77789999999999999998653322 23347899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
..++....+.+.|+++.|+.++.+.++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 888888889999999999999999999999999999999975
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=188.74 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQ 208 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~l 208 (528)
.+-+..|+..|.+++. +.++...+++.|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 6678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 209 LNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 209 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
|..+++..+++.++|+|++++++.+... .....+++|.|+.+|.+++..++..++|+|++++.++++....+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9555678999999999999998864322 233368999999999999999999999999999988888899999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
.|+.+|.+++..++..|+++|++++.+.+.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999988543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=172.21 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=171.6
Q ss_pred cHHHHHHhhcCCCCh--HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 116 VVPRFVEFLDRHDLP--QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
.+|.|+++|.+++ + +++..|+++|.+++.++++.+..+++.|+||.|+.+|.++++++++.|+|+|.||+.+++.++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc----------------CCCHH
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF----------------SSDEE 257 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~ 257 (528)
..+.+.|++++|+.+|..+.+.+++++++.+|++|+..... ......+++|.|+.++. ..+.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995467889999999999999976432 33444678898887652 13679
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcC
Q 009700 258 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~ 314 (528)
++.++.++|.||+..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877788888876 788999999975 2557899999999999864
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=168.90 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=165.1
Q ss_pred cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 73 SIPSMVQGVLSENS--GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
.++.++++|.++++ +++..|+..++++.... .++...+++.|++|.|+++|.+++ +++|..|+|+|.|++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68999999999988 88999999999887653 566778889999999999999988 999999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc---------------chh
Q 009700 151 TRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE---------------HSK 214 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~---------------~~~ 214 (528)
+..+.+.|++|.|+++|. +++.++++.++.+|+|++.... ++..+.+. ++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5789999999999999987654 67777764 68999887620 125
Q ss_pred hHHHHHHHHHhhhhcCCCCCCChhh--hHHHHHHHHHHhcC------CCHHHHHHHHHHHHhhccC
Q 009700 215 LSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAALQHLIFS------SDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 215 ~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~ 272 (528)
..++.+++++|.||+...+.....+ ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998653333322 35789999999874 2678899999999999864
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=189.72 Aligned_cols=353 Identities=14% Similarity=0.152 Sum_probs=261.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+.+++.+.++++.++..++.++..++.......+ .+++|.|++.+.+++ +.++..|+.+|..++...+.....-
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 4567778888889999999999999886422223 457999999999887 8999999999999987433221110
Q ss_pred H----hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 155 I----EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 155 ~----~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
. -..++|.+++++.++++.+|..|+++|++++...+...... -..+++.++..+ .+++..++..++++|..++.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12357778888888999999999999999886544211000 113567777777 67788999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHh-----------cC-
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------LH- 295 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----------~~- 295 (528)
..+......+..+++.+..++.+.+++++..+++++..+++.... ...+.. .+++.++..+ .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 754333344567899999999999999999999999999875421 111111 3566666666 23
Q ss_pred ----------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 296 ----------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 296 ----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
.++.++..|..+++.++...+.. ++. .+++.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34567899999999998654432 222 4677888888888 99999999999999998877655543
Q ss_pred HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-HHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 366 IEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+ .+++|.++..+.++++.||..|+|++++++...... ...+ -.++++.|+..+.+.++.++..++++|.+++....
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3 458999999999999999999999999988632110 0111 12467888888988899999999999999998665
Q ss_pred h
Q 009700 445 A 445 (528)
Q Consensus 445 ~ 445 (528)
.
T Consensus 475 ~ 475 (852)
T 4fdd_A 475 T 475 (852)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-18 Score=176.97 Aligned_cols=381 Identities=13% Similarity=0.131 Sum_probs=264.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+|.+...+.++++.++..|+..|..+.... +. ......++|.+..++.+++ ..++..|+.+|+.++..... .
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~ 276 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---E 276 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---H
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---c
Confidence 344444444444555555555554444331 11 0112235677777776665 67777787777777652111 1
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.....+++.+..++.++++.+|..|+++|+.++...+ ..+.......+++.+..++ .++++.++..++++|..++..-
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence 1223568888899998899999999999999985432 2121112234567777777 7788999999999999997542
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
.. ......++|.+..++.+.+++++..++.++..++...... . ....+++.+..++.+.++.++..++.+++.++
T Consensus 356 ~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 356 GK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11 1223567888999999889999999999998887543211 1 12247888999999999999999999999998
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
...... .+...+++.+..+|.++ +..+|..|+.+++.++...... .....++|.|..++.++++.+|..++++
T Consensus 431 ~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 431 GQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 532221 12234678888999888 8999999999999998632111 1224588999988888899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHH
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIEN 472 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 472 (528)
++.++...+.+. ....+++.|..+++++++.++..+++++..+....+.. +. ....+..|..
T Consensus 504 l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------~~----~~~~~p~l~~ 565 (588)
T 1b3u_A 504 INVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------TL----QSEVKPILEK 565 (588)
T ss_dssp HHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------HH----HHHHHHHHHH
T ss_pred HHHHHHhcCHHH----HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------hh----HHHHHHHHHH
Confidence 999976432221 22358899999999999999999999999998654211 11 1233567778
Q ss_pred HhcCCCHHHHHHHHHHHHHhc
Q 009700 473 LQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 473 L~~~~~~~v~~~a~~ii~~~~ 493 (528)
+..+++.+|+..|...+..+-
T Consensus 566 l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 566 LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HTTCSSHHHHHHHHHHHHHTT
T ss_pred HcCCCchhHHHHHHHHHHHhh
Confidence 889999999999999988663
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=173.99 Aligned_cols=380 Identities=10% Similarity=0.093 Sum_probs=284.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+.+.+.++++.++..|+..|..+....+ . ......++|.|..++++++ +.++..|+.+|..++...+..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--- 237 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--L--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--- 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--H--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--H--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH---
Confidence 5566667778889999999999998876531 1 1223567899999998887 899999999999988733221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.....++|.+..++.++++.+|..++.+|+.++..... .......++.++.++ .++++.++..++++|..++...+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence 12234788888999989999999999999999843211 112234678888888 77889999999999999987653
Q ss_pred CCCh--hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 234 PAPF--DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 234 ~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.... .....++|.+..++.+.++.++..+++++..++..-... . ....+++.+..++.+.++.++..++.+++.+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--N-TIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--H-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--H-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 2211 345678899999999999999999999999987532211 1 1224788899999999999999999999988
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
+...... .....+++.+..++.+. +..+|..++.+++.++.. ..+ .+...++|.+...+.+.+..+|..|+
T Consensus 391 ~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 391 NEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7643321 11234677888888887 899999999999998751 111 11223688899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
.+++.++....++. ....+++.|..++.++++.++..+++++..+....+.. .+.. ..++.|
T Consensus 463 ~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~---------~~~~-----~~~~~l 524 (588)
T 1b3u_A 463 SNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------ITTK-----HMLPTV 524 (588)
T ss_dssp HHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HTHHHH
T ss_pred HHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH---------HHHH-----HHHHHH
Confidence 99999987544332 12347888888888899999999999999988754321 1222 346777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..+..+++++|+..+.+.+..++.
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HhhCCCCCchHHHHHHHHHHHHHH
Confidence 778889999999999888888764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=179.95 Aligned_cols=392 Identities=15% Similarity=0.129 Sum_probs=278.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.++..+.+.++.+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.++..++.+++.++...... .
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~ 125 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----N 125 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----T
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----c
Confidence 3444445678899999999999988652 111222223445677788888777 899999999999998733110 0
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH----hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL----SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~----~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-. -..+++.++..+ .+++..++..++++|..+...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence 135789999999999999999999999999865443211100 112456666777 677889999999999998866
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.+.........+++.+..++.+++++++..++++|..++...++.....+. ++++.++..+.+.++.++..|+.++..+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 432222334678899999999999999999999999999877655444443 4788888999999999999999999998
Q ss_pred hcCCcchhHHHhc---cCChHHHHHHh-----------cc--c--------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 312 VTGDDTQTQCVID---NQGLPRLYQLL-----------TQ--N--------YKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 312 ~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
+..... .. .+. ..+++.++..+ .+ . .+..+|+.|+.+++.++...++. ++.
T Consensus 284 ~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~ 358 (852)
T 4fdd_A 284 AEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP 358 (852)
T ss_dssp TTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GHH
T ss_pred hcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHH
Confidence 864321 11 111 13455666665 22 0 13467999999999997633221 222
Q ss_pred cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
.++|.+...+.+.++.+|..|+++|++++.+... ..... -.++++.++.+++++++.++..+++++.++........
T Consensus 359 -~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 359 -HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 3678888888899999999999999999987543 32221 13478999999999999999999999999987543321
Q ss_pred hccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 448 EAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 448 ~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..++.. +.+..|.....++++.++..|...+..+..
T Consensus 436 ------~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 436 ------PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp ------TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 111221 234566666667899999999999988764
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-17 Score=168.08 Aligned_cols=334 Identities=16% Similarity=0.168 Sum_probs=237.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+.+.+.++++.++..|+.++.++.. ..... .++|.+.++|.+++ +.++..|++++.++...+++..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~- 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV- 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc-
Confidence 45667777888899999888888876642 12222 24788999999887 9999999999999998666533
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
...+.++.+..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ .+.++-.+..++.++..++...
T Consensus 157 --~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 157 --EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp --HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred --ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 2246789999999999999999999999999987763210001112356677776 4556777778888888777432
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
......+++.+..++++.++.|+..|++++.++... +++..+.+.. .+.+.|+.++. +++.++..|+.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888898999999999999999999998752 2334443333 36677776664 78899999999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.++...+..... .+..+. .+.+. +..+|..|++++.+++... .+. .+++.|...+.+.+.++|..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence 998765543221 111111 11233 5778899999998887532 222 246667777888888899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 390 SWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+++++.++.... .... .+++.|++++...+..+...++.++..++...+.
T Consensus 374 v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 374 VRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc
Confidence 999999887643 2222 2467888888888888777777788887765543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-15 Score=148.27 Aligned_cols=416 Identities=13% Similarity=0.146 Sum_probs=294.2
Q ss_pred ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcccCCc----------------hhHHHH-hcCcHHHHHHhhcCCCChHH
Q 009700 72 ESIPSMVQGVLS--ENSGLQLEATTQFRKLLSIERCP----------------PIEEVI-RAGVVPRFVEFLDRHDLPQL 132 (528)
Q Consensus 72 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~-~~g~i~~Lv~lL~~~~~~~v 132 (528)
.+++.++..|+. .|.++...++..|.++++....+ ..+.++ +.+.++.|+.+|++.+ -.+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 368999999985 57888888999998887754221 122333 4678999999999888 899
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc
Q 009700 133 QFEAAWALTNIASGTSE-HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN 210 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~ 210 (528)
+..++.+|..++...++ ..+.+... ++++.|+.+|+++.+.+|..++..|.+++.+++..++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997777 66667754 89999999999999999999999999999999999999999999999999994
Q ss_pred cch---hhHHHHHHHHHhhhhcCCCC-CCChhhhHHHHHHHHHHhcCCCHH------HHHH---HHHHHHhhccC-----
Q 009700 211 EHS---KLSMLRNATWTLSNFCRGKP-PAPFDQVRPALAALQHLIFSSDEE------VLTD---ACWALSYLSDG----- 272 (528)
Q Consensus 211 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~------v~~~---a~~~l~~l~~~----- 272 (528)
... ...+...|+.++.+|.+.++ ........+++|.|..++..+++. ...+ ++.++.-++..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23678899999999999974 333344478899999988754321 2333 44555555543
Q ss_pred -ChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHHHhHhhcCCcchhHHHhccC---------ChHHHHHHhcccCc
Q 009700 273 -TNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRTVGNIVTGDDTQTQCVIDNQ---------GLPRLYQLLTQNYK 340 (528)
Q Consensus 273 -~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~ 340 (528)
...+...+.+.|+++.+++++... ...++..|+.+++.+..+++...+.+.... ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 224556778889999999998875 567899999999999999887555554321 33334455655546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CcH---HHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEA----------NII---APLVYLLQHAEFEVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
..+|.+|+.++..+..++++....++.. +.+ ..+..-+.+.|+----.|+.+|.++.... ++....
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n-~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN-ATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 8899999999999998887665555532 111 13445555666644445788888888853 443333
Q ss_pred HHH--------C---CChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-
Q 009700 408 LVS--------Q---GCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ- 474 (528)
Q Consensus 408 l~~--------~---~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~- 474 (528)
+.. . -+++.+..+|.. .++.+....+..|...+..++.. ...++.+...+..|....
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A----------V~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA----------VTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH----------HHHHHHSTTHHHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH----------HHHHHcCCchHHHHHHHHH
Confidence 322 1 125555666543 56777666677776666655433 566776666677666543
Q ss_pred cC-C--CHHHHHHHHHHHHHhcCCCccc
Q 009700 475 SH-D--NNEIYEKAVKLLERYWVEEEDD 499 (528)
Q Consensus 475 ~~-~--~~~v~~~a~~ii~~~~~~~~~~ 499 (528)
++ . +.-|+-.+.-++.-+|....++
T Consensus 528 ~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 528 ENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred hccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 32 2 2347788888887777655443
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-15 Score=150.70 Aligned_cols=368 Identities=17% Similarity=0.159 Sum_probs=272.5
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCChh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-DLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
+.|+.|...+.+ .-.+-|..|+..|+.+.... +..+.++++|.|+..|+.+ ++.++...++..|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 468899998885 45788999999999885432 2233456799999999764 3578888899999988774432
Q ss_pred -----------------hHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-HHHHHHh-cCChHHHHHhh
Q 009700 150 -----------------HTRVVI-EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS-CRDLVLS-HGALMPLLAQL 209 (528)
Q Consensus 150 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~-~g~i~~Ll~ll 209 (528)
..+.+. +.+.++.|+.+|++.+..+|-.++.+|..++...+. .++.++. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223443 357899999999999999999999999999988877 7787774 48999999999
Q ss_pred ccchhhHHHHHHHHHhhhhcCCCCCCChhh-hHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhC
Q 009700 210 NEHSKLSMLRNATWTLSNFCRGKPPAPFDQ-VRPALAALQHLIFSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAG 284 (528)
Q Consensus 210 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 284 (528)
++..+.++..++..|.+|+.+.+..+... .+++++.|+.++..+. ..+..+++.++.+|...+..+...+.+.+
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 77788999999999999999975555444 4699999999998654 47899999999999999988888889999
Q ss_pred cHHHHHHHhcCCChh------hHHH---HHHHHhHhhcCCc------chhHHHhccCChHHHHHHhcccC-chhHHHHHH
Q 009700 285 VCPRLVELLLHSSTT------VLVP---ALRTVGNIVTGDD------TQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEAC 348 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~------v~~~---al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 348 (528)
+++.|..+|..+... ...+ ++.++.-++.... .....+.+.|++..++.++..+. ...++.+|+
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 2223 5666666665532 23446788999999999987653 567999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------cHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHC----C--
Q 009700 349 WTISNITAGSRSQIQAVIEAN---------IIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQ----G-- 412 (528)
Q Consensus 349 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 412 (528)
.+++.+..+++.....+.+.. ++..|+.++.+. ..++|..|+.++..+..++...+ ..+... .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q-~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ-GEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH-HHHHHhcCCcccc
Confidence 999999999998887776533 333344445444 58999999999999998653222 222221 1
Q ss_pred ----Ch---HHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 413 ----CI---KPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 413 ----~l---~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
.+ ..++.-+-+.|+.-.--+.-++..++...+..
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 01 12344444556644333555677777665544
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-16 Score=145.01 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=202.0
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 192 (528)
..+.++.|+..|.+++ +.++..|+++|+++.. + ++++.|+.+|.++++.+|..++++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4567999999999887 9999999999999863 2 35788999999999999999999999986443321
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
.. .++.+...+..++++.++..++++|..+....+ ......++.|..++.++++.++..++++|+++...
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH
Confidence 11 223333333367789999999999999975432 12346789999999999999999999999987642
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|+
T Consensus 159 -----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 159 -----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 478999999999999999999999999853222 3467889999888 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTV 431 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~ 431 (528)
++. +...++.|+..+.+++ ++..|+++|+.+.. + ..++.|..++.. .+++++..
T Consensus 218 ~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~~~ 272 (280)
T 1oyz_A 218 YRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS 272 (280)
T ss_dssp HTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred HhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHHHH
Confidence 985 2357888999998755 89999999998854 1 367788888864 56777777
Q ss_pred HHHHHH
Q 009700 432 CLEGLE 437 (528)
Q Consensus 432 ~l~~l~ 437 (528)
+++.+.
T Consensus 273 ~~~~l~ 278 (280)
T 1oyz_A 273 AIDKLK 278 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777664
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=155.65 Aligned_cols=332 Identities=17% Similarity=0.143 Sum_probs=245.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+++.+.+++...+..+...+..++.. .+.. + .-+++.|.+-|++++ +.++..|+.+|+++.. ++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~--~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDM--A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHH--H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchH--H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence 467888889999999998888888777653 1211 1 124678888888887 9999999999999864 55444
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +++.+.++|.++++.+|..|++++++++...|+. +.+.+.++.+..+| .++++.++..|+++|..++...
T Consensus 121 ~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 Y-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp H-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 3 3578999999999999999999999998766652 22245678888888 7889999999999999999886
Q ss_pred CCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 233 PPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 233 ~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+.. ........++.|+..+...++..+..++.++..++...+.... .+++.+..++++.++.++..|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 543 3344466778888888888888999999999998866543322 3678888889999999999999999999
Q ss_pred hcC---CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHH
Q 009700 312 VTG---DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 312 ~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 388 (528)
... ++...+.+. ..+.+.|+.++. + ++.+|..|+.+|+.+....+..... .+..++ .+.+.+..+|..
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLE 337 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHH
Confidence 753 233333222 345667776654 6 8999999999999998644432211 111121 222445899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 389 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
|++.|.+++...+. .. +++.|..++...|.+++..++++|..+....+
T Consensus 338 al~~L~~l~~~~nv---~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 338 KLDIMIRLASQANI---AQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHHTCCSSTH---HH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCChhhH---HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 99999999875442 22 46667788888899999888888888876543
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-15 Score=160.28 Aligned_cols=356 Identities=14% Similarity=0.205 Sum_probs=248.5
Q ss_pred cHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLSE-------NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.++.++..+... +...+..|...|..+....+.... ..+++.+.+.+.+.+ ..++..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 356777777642 356888888888887765321111 235777788888777 8999999999999998
Q ss_pred CCh-hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH---HHHHHhcCChHHHHHhhccchhhHHHHHH
Q 009700 146 GTS-EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC---RDLVLSHGALMPLLAQLNEHSKLSMLRNA 221 (528)
Q Consensus 146 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a 221 (528)
+.. +.....+. .+++.++..+.++++.+|..++|+|+.++...... ...+ ..+++.++..+ .+. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGL-QDH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHHH
Confidence 643 33333332 47889999999999999999999999998432110 0011 12467777777 443 7899999
Q ss_pred HHHhhhhcCCCC----CCChhhhHHHHHHHHHHhcCCC--HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 222 TWTLSNFCRGKP----PAPFDQVRPALAALQHLIFSSD--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 222 ~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+|+|.+++.... .........+++.|..++.+.+ +.++..++.+++.++...+......+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 2222445778889999998544 789999999999998755433333333 256666666542
Q ss_pred C---------------ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHHHHHHHHHHHHhcCCH
Q 009700 296 S---------------STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIKKEACWTISNITAGSR 359 (528)
Q Consensus 296 ~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 359 (528)
. ...++..++.+|+.++...+....... ..+++.+...+.+. +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 1 345678899999999876554322222 25677888888877 66 899999999999986333
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC--hHHHHHHHHHHH
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD--PRIVTVCLEGLE 437 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~~l~~l~ 437 (528)
......+. .++|.|+..+.+.++.++..|+.++..++.........++ ..+++.+...+.+.+ +.++..++.++.
T Consensus 631 ~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 32333332 3889999999888899999999999998875443333333 236777788887654 889999999999
Q ss_pred HHHHhhhh
Q 009700 438 NILKIGEA 445 (528)
Q Consensus 438 ~i~~~~~~ 445 (528)
.++...+.
T Consensus 708 ~l~~~~~~ 715 (861)
T 2bpt_A 708 DIASNIGA 715 (861)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhhh
Confidence 99986543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=137.54 Aligned_cols=254 Identities=14% Similarity=0.095 Sum_probs=199.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
..++.+++.|.++++.++..|+..|.++.. .+.++.|+.+|.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 468999999999999999999999997742 235889999999888 9999999999999875222 11
Q ss_pred HHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
.. +++.|. .++.++++.+|..++++|+++....+.... ..++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 246778999999999999999744332222 2467888888 78899999999999998864
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|..++.++++.++..|+++|+.
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 268899999999999999999999999864433 256889999999999999999999998
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc-CChHHHHHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH-AEFEVKKEA 389 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a 389 (528)
+. +...++.|+..+.++ + ++..|+++|+.+.. ..++|.|..++.+ .+.++...+
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 86 234678899999765 3 89999999999843 2478899999865 467888887
Q ss_pred HHHHH
Q 009700 390 SWAIS 394 (528)
Q Consensus 390 ~~aL~ 394 (528)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-14 Score=149.88 Aligned_cols=368 Identities=17% Similarity=0.136 Sum_probs=225.1
Q ss_pred CCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhc------cccCCCCchhhhhhHHHhhccHHHHHHHhcCCCHHHHH
Q 009700 17 KTGVDADEARRRREDNLVEIRKNKREDSLLKKRREG------LILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQL 90 (528)
Q Consensus 17 k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~------~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~ 90 (528)
++..+.++-+++-.....+||+.-++....+|+... .-.+...+ .....+++.+.+++...+.
T Consensus 20 r~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~-----------~~~~~vik~~~s~~~~~Kr 88 (618)
T 1w63_A 20 RTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAH-----------FGQLECLKLIASQKFTDKR 88 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCG-----------GGHHHHHHHHHSSSHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCc-----------chHHHHHHHHcCCchHHHH
Confidence 333455555555555567777776544322222110 00111000 2456778888899988888
Q ss_pred HHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC
Q 009700 91 EATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA 170 (528)
Q Consensus 91 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 170 (528)
.+.-.+..++.. ++.... -++..|.+-|++++ +.++..|+++|+++.. ++... .+++.+.++|.++
T Consensus 89 l~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L~~~ 154 (618)
T 1w63_A 89 IGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLLKTS 154 (618)
T ss_dssp HHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHHcCC
Confidence 887788777654 222111 14778888888888 8999999999999985 43322 3568899999999
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
++.+|..|+.+++++....|+.. .+.++.+..++ .+.++.++..++++|..++...+.. ......++|.++.+
T Consensus 155 ~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~ 227 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRI 227 (618)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 99999999999999987666532 24677777888 7788999999999999998764321 12234556666655
Q ss_pred hc---------------CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc------CCChhhHHHHHHHHh
Q 009700 251 IF---------------SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL------HSSTTVLVPALRTVG 309 (528)
Q Consensus 251 l~---------------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~al~~L~ 309 (528)
|. ..++..+..++.++..++...++... .+.+.|..++. +.+..+...|++++.
T Consensus 228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~ 302 (618)
T 1w63_A 228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIM 302 (618)
T ss_dssp HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 54 24777888888888888876543221 23334444332 123456666666666
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.+... +. +.. .+++.|..+|.++ ++.+|..|+.+|+.++...+..++ ...+.++.++.+++..+|..|
T Consensus 303 ~l~~~-~~----l~~-~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 303 DIKSE-SG----LRV-LAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HSCCC-HH----HHH-HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSSCHHHHHHH
T ss_pred hcCCC-HH----HHH-HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCCChhHHHHH
Confidence 65331 11 111 2345666666666 667777777777777654443221 244556666666666677777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 009700 390 SWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~ 441 (528)
+.+|..++...+-+. +++.|..++...|.+++..++.+|..+..
T Consensus 371 lelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 371 MELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 776666665433211 12333344444455555555555555444
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=157.99 Aligned_cols=400 Identities=12% Similarity=0.127 Sum_probs=267.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH--
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT-- 151 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-- 151 (528)
++.+.+.+.+.+...+..|+.++..++...........+ ..++|.|+..+.+++ +.++..++|+++.++.......
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 445555667888999999999999988553112222222 347899999998887 9999999999999986311100
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hhHHHHHHhcCChHHHHHhhcc-chhhHHHHHHHHHh
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-----PSCRDLVLSHGALMPLLAQLNE-HSKLSMLRNATWTL 225 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~~~~a~~~L 225 (528)
... -..+++.++..+.++ +.++..++++|.+++... ......+ ..+++.++..+.. +.+..++..++.++
T Consensus 449 ~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 000 123578888888775 899999999999997431 1111111 1246667777742 33478999999999
Q ss_pred hhhcCCCCCCChhhhHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH
Q 009700 226 SNFCRGKPPAPFDQVRPALAALQHLIFSS---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290 (528)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 290 (528)
..++...+.........++|.++..+... ...++..++.++..++...+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99987765433344566777777666521 3457788999999888654432222222 3778888
Q ss_pred HHhcCCCh-hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009700 291 ELLLHSST-TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEAN 369 (528)
Q Consensus 291 ~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 369 (528)
..+.+.+. .++..++.+++.++..........+. .+++.+...+.+. ++.++..++++++.++..........+ ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence 88888777 89999999999998654433322222 4788888888776 888999999999999864333333333 34
Q ss_pred cHHHHHHHHccCC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC-----------hHHHHHHHHHH
Q 009700 370 IIAPLVYLLQHAE--FEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD-----------PRIVTVCLEGL 436 (528)
Q Consensus 370 ~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-----------~~~~~~~l~~l 436 (528)
+++.++..+.+.+ +.+|..++.+++.++.........++-. +++.+...+.... ..++..+++++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 7888888888764 8899999999999987544444444433 6777777776432 34678888999
Q ss_pred HHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC----CHHHHHHHHHHHHHhcC
Q 009700 437 ENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD----NNEIYEKAVKLLERYWV 494 (528)
Q Consensus 437 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~----~~~v~~~a~~ii~~~~~ 494 (528)
..++........ ...+|...+ ++.|.....+. +..++..|...+..+..
T Consensus 759 ~~i~~~l~~~~~----~~~~~~~~i-----~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 759 VGIVAGLHDKPE----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHTTTCHH----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHH----HHHHHHHHH-----HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 888865431100 012233222 34554444442 78999999888887743
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=157.30 Aligned_cols=400 Identities=16% Similarity=0.168 Sum_probs=250.2
Q ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009700 74 IPSMVQGVLS-------ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG 146 (528)
Q Consensus 74 l~~l~~~l~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~ 146 (528)
++.+++.+.. ++...+..|+..+..+....+. .++ ..++|.+...+.+++ +.++..|+++|+.++.+
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcC
Confidence 5666666652 3456788888888877665321 111 246778888888877 89999999999999986
Q ss_pred Ch-hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH---HHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 147 TS-EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC---RDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 147 ~~-~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
.. +...... ..++|.++..|.++++.+|..|+|+|++++...+.. ...+ ..+++.++..+ .+. +.++..++
T Consensus 397 ~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l-~~~-~~v~~~a~ 471 (876)
T 1qgr_A 397 PEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGL-SAE-PRVASNVC 471 (876)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHT-TSC-HHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHH-cCC-HHHHHHHH
Confidence 54 3333322 347899999999999999999999999998654321 0111 12567777777 343 78899999
Q ss_pred HHhhhhcCCCC--------------CCChhhhHHHHHHHHHHhcCC---CHHHHHHHH----------------------
Q 009700 223 WTLSNFCRGKP--------------PAPFDQVRPALAALQHLIFSS---DEEVLTDAC---------------------- 263 (528)
Q Consensus 223 ~~L~~l~~~~~--------------~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~---------------------- 263 (528)
|+|.+++.... .........++|.|..++... +..++..++
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 99999886421 112234466777777776543 223433333
Q ss_pred ----------------------------------HHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcCCC--hhhHHHHHH
Q 009700 264 ----------------------------------WALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHSS--TTVLVPALR 306 (528)
Q Consensus 264 ----------------------------------~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~ 306 (528)
+++..++..-. ........ .+++.++.++.+.. +.++..++.
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD-VVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH-HHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHH-HHHHHHHHHHHhccCCCCccHHHHH
Confidence 34444333322 12111111 25677777777764 478999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc--CChH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH--AEFE 384 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~ 384 (528)
+++.++..........++ .+++.+...|.+..++.+|..|+++++.++......+...+ ..+++.++..+.+ .+..
T Consensus 631 ~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRS 708 (876)
T ss_dssp HHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGG
T ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHH
Confidence 999998754332222222 36778888887643678999999999999863323333333 3578888898887 3678
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC----Ch-------HHHHHHHHHHHHHHHhhhhchh--cc-
Q 009700 385 VKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP----DP-------RIVTVCLEGLENILKIGEADKE--AG- 450 (528)
Q Consensus 385 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~-------~~~~~~l~~l~~i~~~~~~~~~--~~- 450 (528)
++..+++++++++.....+...++- .+++.+...+... |+ .++..++.++..++........ ..
T Consensus 709 ~~~~~~~~l~~i~~~~g~~~~~~l~--~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~ 786 (876)
T 1qgr_A 709 VKPQILSVFGDIALAIGGEFKKYLE--VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPD 786 (876)
T ss_dssp GHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGG
T ss_pred hhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccch
Confidence 9999999999997633333323322 2566666666543 22 6777888888888875432100 00
Q ss_pred CCcchhhHHHhhhcccHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Q 009700 451 STTANVYSEMIDECDGLDKIENLQSHD--NNEIYEKAVKLLERYWV 494 (528)
Q Consensus 451 ~~~~~~~~~~l~~~g~~~~l~~L~~~~--~~~v~~~a~~ii~~~~~ 494 (528)
.....+|...+ +..+..+..++ +..++..|...+..+..
T Consensus 787 ~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 787 VMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp GGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 00122333333 34444554555 78999888888776543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-14 Score=154.27 Aligned_cols=394 Identities=16% Similarity=0.158 Sum_probs=250.5
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchh-HHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPI-EEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
++.+.+.+.++ +..++..|+.++..++... .... .......+++.+..++.+++ ++++..++++|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 45566667665 5789999999999887542 1111 11111236788888887776 899999999999999855554
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------------HHHHHHhcCChHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS----------------------CRDLVLSHGALMPLLAQ 208 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----------------------~~~~~~~~g~i~~Ll~l 208 (528)
....+...+++.++..+.+.++.++..+++++.+++..... .+..+ ...++.++..
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~ 329 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT 329 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence 44444446788888888888899999999999998743210 01011 1245666666
Q ss_pred hcc------chhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHHH
Q 009700 209 LNE------HSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAVI 281 (528)
Q Consensus 209 l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~ 281 (528)
+.. +.+..++..+..+|..++...+ ......+++.+...+.+.++.++..++++++.++.... +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 632 2346788899999988876543 13456788888888988999999999999999998754 3343333
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH-
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR- 359 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~- 359 (528)
. .+++.++..+.++++.++..|++++++++...+... ..-.-..+++.++..|.+ ++.++..++|++++++....
T Consensus 407 ~-~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~ 483 (876)
T 1qgr_A 407 I-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYE 483 (876)
T ss_dssp H-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhh
Confidence 3 488999999999999999999999999997644321 000112456777777765 47899999999999985311
Q ss_pred -------------HHHHHHHHcCcHHHHHHHHccC---ChHHHHHHHHHH------------------------------
Q 009700 360 -------------SQIQAVIEANIIAPLVYLLQHA---EFEVKKEASWAI------------------------------ 393 (528)
Q Consensus 360 -------------~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL------------------------------ 393 (528)
......+ ..++|.|+..+... +..++..+..++
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (876)
T 1qgr_A 484 AADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562 (876)
T ss_dssp TTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence 0011111 13555565555443 234444444444
Q ss_pred --------------------------HHhcCCCC-HHHHHHHHHCCChHHHHhhcCCCC--hHHHHHHHHHHHHHHHhhh
Q 009700 394 --------------------------SNATSGGT-REQIQFLVSQGCIKPLCDLLVCPD--PRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 394 --------------------------~nl~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~~l~~l~~i~~~~~ 444 (528)
..++.... .....++ ..+++.+..+++... +.++..++.++..++...+
T Consensus 563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 44433322 2221221 125667777777654 4688889999999887543
Q ss_pred hchhccCCcchhhHHHhhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009700 445 ADKEAGSTTANVYSEMIDECDGLDKIENLQSH-DNNEIYEKAVKLLERY 492 (528)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~-~~~~v~~~a~~ii~~~ 492 (528)
.. ..+|... .++.+.....+ .+++++..|...+..+
T Consensus 641 ~~-------~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 641 GE-------FLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp GG-------GGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hh-------HHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 22 1223322 23444444433 4777877766555443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-13 Score=136.55 Aligned_cols=389 Identities=12% Similarity=0.081 Sum_probs=267.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..++..+.++|...|.+|-..|.++.... ..++++.|.+++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 456777777899999999999998754320 1235677788887652 489999999999999764311110
Q ss_pred H-----H------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccch--hhHHH
Q 009700 153 V-----V------IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHS--KLSML 218 (528)
Q Consensus 153 ~-----i------~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~--~~~~~ 218 (528)
. . ....+-..|+..|.++++.+ ..++.+++.++... +.. .-.+.++.|+..+ .++ +..++
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHH
Confidence 0 0 01123356777788877778 88999999997432 210 0124677788888 555 78899
Q ss_pred HHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChHHHH-HHHHhCcHHHHHHHhc
Q 009700 219 RNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLL 294 (528)
Q Consensus 219 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~ 294 (528)
..++.+|..++... +.........+++.+..++.+. +..++..+++++.++...-.+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999753 2222334467889999999887 789999999999987654322111 0111114666777788
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH--------------
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-------------- 360 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-------------- 360 (528)
+.++.++..++++++.++...+......+..++++.++..+.+. ++.++..|++++..++.....
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 88899999999999999976654332222226777888888887 899999999999998752110
Q ss_pred -------HHHHHHHcCcHHHHHHHHccC-------ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh
Q 009700 361 -------QIQAVIEANIIAPLVYLLQHA-------EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP 426 (528)
Q Consensus 361 -------~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 426 (528)
..+..+ ..++|.++..+... ++.+|..|+.+|..++......... .+++.+...+.+.++
T Consensus 307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW 380 (462)
T ss_dssp SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence 111111 23677777777532 4579999999999988754322222 357788888999999
Q ss_pred HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 427 RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 427 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.++..++.+|..+........ +...+ ...+..|..+..++++.|+..|.+.+.+|...
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~---------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQ---------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTT---------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH---------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999886432110 11111 34567788888899999999999999998753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=147.06 Aligned_cols=361 Identities=13% Similarity=0.106 Sum_probs=244.9
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCc----------hhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHH
Q 009700 74 IPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCP----------PIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALT 141 (528)
Q Consensus 74 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~----------~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~ 141 (528)
+..+...+.+. ++.+|..|+..|++++.....+ ....-....+...|+..|.+++ +.+ ..++.+++
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~ 114 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence 45566666653 6789999999999997642000 0001112334566778888777 677 88999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccch-hhHH
Q 009700 142 NIASGTSEHTRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHS-KLSM 217 (528)
Q Consensus 142 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~ 217 (528)
.++....... .-.+++|.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.+.. +..+
T Consensus 115 ~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~v 190 (462)
T 1ibr_B 115 GIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNV 190 (462)
T ss_dssp HHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHH
Confidence 9987321100 0136789999999888 8999999999999998643 22111111 125677777784332 7889
Q ss_pred HHHHHHHhhhhcCCCC-C-CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 218 LRNATWTLSNFCRGKP-P-APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 218 ~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+..+++++.++..... . ........+++.+...+.+.+++++..+++++..++...+......+..++++.++..+.+
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (462)
T 1ibr_B 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998764321 0 0111112357777778888899999999999999987654332222222577788888888
Q ss_pred CChhhHHHHHHHHhHhhcCCcc-----------------hhHHHhc---cCChHHHHHHhccc------CchhHHHHHHH
Q 009700 296 SSTTVLVPALRTVGNIVTGDDT-----------------QTQCVID---NQGLPRLYQLLTQN------YKKSIKKEACW 349 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l~~~~~~-----------------~~~~~~~---~~~l~~L~~lL~~~------~~~~v~~~a~~ 349 (528)
.++.++..|+.+++.++..... ....++. ..+++.++..+... .+..+|..|+.
T Consensus 271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence 9999999999999988754200 0000111 23556666666432 14579999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
+|..++...++ .++ ..++|.+...+.+.++.+|..|+.+|+.++.+..++...... ..+++.++.++.++++.++
T Consensus 351 ~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 351 CLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp HHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHH
Confidence 99999864332 122 246788888889999999999999999999865432211111 4578999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 009700 430 TVCLEGLENILKIGEA 445 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~ 445 (528)
..++++|.++......
T Consensus 426 ~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 426 DTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999986543
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=144.08 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=189.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+..+.+.++++++.++..|+++|.++... .+. ..+++.+..+|.+++ +.++..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 567888889999999999999999988532 122 246888999999988 99999999999999986665432
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--------------chhhHHH
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--------------HSKLSML 218 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--------------~~~~~~~ 218 (528)
+.++.+..+|.+.++.++..|+++|+.++...+.....+. ..++.++..|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 5788888999999999999999999999987665322322 467777777632 2356677
Q ss_pred HHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc------CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHH
Q 009700 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF------SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292 (528)
Q Consensus 219 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 292 (528)
..++.+|..++...|. .....++.|..++. +.+..+...+++++..+... +... . .++..|..+
T Consensus 252 ~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~----~-~a~~~L~~~ 321 (618)
T 1w63_A 252 VRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLR----V-LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHH----H-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHH----H-HHHHHHHHH
Confidence 7788888888765421 11122333333332 22346667777777766432 2111 1 245566666
Q ss_pred hcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHH
Q 009700 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372 (528)
Q Consensus 293 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 372 (528)
+.+.++.++..|+.+|+.++...+.... .....++..+.++ +..+|..|+.++..++.... +.. +++
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv~ 388 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MMK 388 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HHH
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HHH
Confidence 7766777777777777777765443221 1344566666666 66777777777777764321 111 234
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.|...+.+.+.++|..++.+|+.++.
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555666666677666666666655
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=152.89 Aligned_cols=404 Identities=12% Similarity=0.125 Sum_probs=273.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+++.+.+.|++.|.+|+..|.+.+... ......-....+++.|++.|.+.+ +.+|..|+.+|..++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 4788999999999999999999999877543 111111112346888999998777 999999999999999754431
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH------HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC------RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
.+ ..+++.|+..|.++++.+|..++.+|+.++...+.. ... .-..+++.|+..+.++++..++..++.+|.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 135688888888888899999999999998443321 111 112367888888843577899999999999
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-hhhHHHHH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-TTVLVPAL 305 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al 305 (528)
.++...+..-......+++.+...+.+++..++..++.+++.++...++. ++ ..+++.++..|.... +.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99864332222345788899999999999999999999999998765432 12 246788888776543 46788899
Q ss_pred HHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc-----
Q 009700 306 RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH----- 380 (528)
Q Consensus 306 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~----- 380 (528)
.+++.++...+...... -..+++.++..+.+. ++.+|..++++++.++...+..+...+. .++|.++..+..
T Consensus 236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence 99999987554322111 236888999999887 8999999999999998744332222221 245555444321
Q ss_pred --------------------------------CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHH
Q 009700 381 --------------------------------AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 381 --------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~ 428 (528)
..+.+|..|+.++..++.........++ ..+++.+...+.+.++.+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHH
Confidence 1245799999999998874432222332 457888888898888999
Q ss_pred HHHHHHHHHHHHHhhhhchh-cc-------CCcc-hhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 429 VTVCLEGLENILKIGEADKE-AG-------STTA-NVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~-~~-------~~~~-~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
+..++.++..++........ .. ..+. ..+...+ ...++.+.....++++.++..+...+..+..
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999888874321000 00 0000 0011111 1224555555677888888777777766554
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-13 Score=150.33 Aligned_cols=398 Identities=12% Similarity=0.110 Sum_probs=260.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCch----hHHHHhcCcHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCC
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP----IEEVIRAGVVPRFVEFLDR-HDLPQLQFEAAWALTNIASGT 147 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~ 147 (528)
.++.++..+.++++.+|..|+.++..++....... ...-.-..++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 36777888888888899999999998887642220 0111224579999999984 55 899999999999998522
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+...... -..+++.++..|.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 1111000 023567777888888899999999999999865542 11 123577788777544344667778888888
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC------------
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH------------ 295 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------ 295 (528)
++...+..-......++|.+...+.+.+++++..+++++..++...++.....+. .+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccc
Confidence 8765433222345789999999999889999999999998887654332222222 244444443321
Q ss_pred -------------------------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHH
Q 009700 296 -------------------------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWT 350 (528)
Q Consensus 296 -------------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 350 (528)
..+.++..|+.+++.++...+......+ ..+++.++..+.+. +..+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1356788999999999875543332333 35678888888777 88999999998
Q ss_pred HHHHhcC--C-----------------HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 351 ISNITAG--S-----------------RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 351 L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
+..++.. . ......++ ..+++.+...+.+.++.+|..++.+|+.++.........++ .
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence 8887641 1 11222222 33677777779999999999999999988775321111121 1
Q ss_pred CChHHHHhhcCCCCh--HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 412 GCIKPLCDLLVCPDP--RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~--~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
.+++.+...|....+ .++..++..+..++...... .+...+. ..+..|.....+++..++..|...+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---------~~~~~l~--~llp~L~~~l~d~~~~v~~~al~~l 543 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---------VFHPHVQ--ALVPPVVACVGDPFYKITSEALLVT 543 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---------GGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---------HHHhHHH--HHHHHHHHHHcccchHHHHHHHHHH
Confidence 357788888887654 78888888888887632211 1222332 3356666666667777766665555
Q ss_pred HHhc
Q 009700 490 ERYW 493 (528)
Q Consensus 490 ~~~~ 493 (528)
..+.
T Consensus 544 ~~l~ 547 (1230)
T 1u6g_C 544 QQLV 547 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-12 Score=115.64 Aligned_cols=187 Identities=21% Similarity=0.212 Sum_probs=157.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+.++.|+.+|.++++.+|..++++|+.+.. ...++.|+.++ .+++..++..++++|..+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 578999999999999999999999998743 13678899999 67889999999999999863
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
...++.|..++.++++.++..++++|+.+... +.++.|+.++.++++.++..|+.+|+.+..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 25678999999999999999999999988642 367889999999999999999999998843
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.+|..|..+|.++.
T Consensus 142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 23577899999888 99999999999999942 2 35778888999999999999999999987
Q ss_pred CCC
Q 009700 398 SGG 400 (528)
Q Consensus 398 ~~~ 400 (528)
...
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 754
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-12 Score=110.89 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=157.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+..+.++.+|.++++.+|..|+++|+.+.. .+.++.|+.++ .++++.++..++++|..+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH------
Confidence 457889999999999999999999998753 13578899999 788899999999999988532
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..++.|..++.++++.++..++++|+.+... ..++.|+.++.++++.++..|+++|+.+..
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 4688999999999999999999999987642 367889999999999999999999998853
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
...++.|..++.++ ++.+|..|+++|+.+. .+ ..++.|..++.++++.+|..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24677899999988 9999999999999993 22 25778888899999999999999999875
Q ss_pred C
Q 009700 398 S 398 (528)
Q Consensus 398 ~ 398 (528)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-12 Score=114.98 Aligned_cols=187 Identities=21% Similarity=0.192 Sum_probs=157.6
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
.+.++.|+.+|.+++ +.++..|+++|+.+.. ..+++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999887 9999999999998764 2568999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.+.++.|+.++ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+...
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 142 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 142 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-
Confidence 23578888888 78889999999999999863 24678999999999999999999999998532
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
..++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 143 ----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 143 ----------RAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 367889999999999999999999998853 23566888999888 99999999999999
Q ss_pred HhcC
Q 009700 354 ITAG 357 (528)
Q Consensus 354 l~~~ 357 (528)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9753
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=113.01 Aligned_cols=185 Identities=21% Similarity=0.201 Sum_probs=157.9
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
.+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.+|..++++|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 346889999999998 9999999999998764 2468999999999999999999999999842 1
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
..++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 76 ------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 3578888888 77899999999999999853 2468889999999999999999999999863
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
.+.++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|.++|..
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 2477889999999999999999999999832 12567888899888 99999999999998
Q ss_pred Hh
Q 009700 354 IT 355 (528)
Q Consensus 354 l~ 355 (528)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-10 Score=116.66 Aligned_cols=332 Identities=14% Similarity=0.123 Sum_probs=232.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
....+++.+.+++...+..+.-.+..++.. ++..-.+ ++..+.+=|++++ +.++-.|+++++++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 467888899999999998888888877654 2221111 3667777788888 9999999999999965 55433
Q ss_pred HHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 153 VVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
.+++.+.++| .+.++.+|..|+.++..+....|+. +...+.++.+..+| .+.++.++.+++.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3568899999 8899999999999999998766642 22246788888888 78889999999999999987
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCC-------------CHHHHHHHHHHHHhhccCC-hHHHHHHHHhCcHHHHHHHhc--
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSS-------------DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLL-- 294 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-- 294 (528)
..+..-.......+..|.+++..+ ++-.+...+..+..++... ++....+.+ ++..++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 653211112233444444554322 6788999999999988643 333333332 4444444332
Q ss_pred -------CCCh--hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 295 -------HSST--TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 295 -------~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
+.+. .+...|++++..+.. .+.... .++..|..+|.++ ++.+|..|+..|..++...+. . .+
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence 2223 778888888888753 222121 3466788888877 999999999999999875432 1 12
Q ss_pred HHcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 366 IEANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 366 ~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
+ ....+.++.++. +.|..+|..|+..|..++. ...+.. ++..|..++...|.+++..++.++..+...
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 2 246778888898 8999999999999999986 333443 344566666667777777777777666654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-09 Score=108.41 Aligned_cols=334 Identities=13% Similarity=0.070 Sum_probs=228.3
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLS---ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+..+-+.+++ .++..+..++..+..+...+ .+. ..+.+..++++.+++ ...+..+.-++..++..+++.
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G-~d~------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~ 108 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDI------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSEL 108 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHS-CCC------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CCC------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHH
Confidence 3445555553 35666666666655444432 222 235777788999888 899999999999999877665
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhhhc
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~l~ 229 (528)
... ++..+.+=|.++++.++..|+.+|+++.. ++..+ ..++.+.+++. .+.++.+++.|+.++..+.
T Consensus 109 ~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 109 IRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp HHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 433 35778888889999999999999999953 33222 25677777773 4678999999999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-------------
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS------------- 296 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------------- 296 (528)
...|.... ..+.++.+..+|.+.|+.++..|+.++..++...+......+. .++..|..++...
T Consensus 177 ~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 177 RTSPDLVP--MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp HHCGGGCC--CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred HhChhhcC--chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCC
Confidence 86542211 1367889999999999999999999999998766543221111 1333343444321
Q ss_pred ChhhHHHHHHHHhHhhcCCc-chhHHHhccCChHHHHHHh---------cccC-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 297 STTVLVPALRTVGNIVTGDD-TQTQCVIDNQGLPRLYQLL---------TQNY-KKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL---------~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
++-.+...++.++.++...+ .....+.+ ++..++..+ ++.. ...|..+|+.++..+. .+++...
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH--
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHH--
Confidence 46688889999998886432 33332322 333333322 1220 2378889999999885 3444332
Q ss_pred HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHh
Q 009700 366 IEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~ 442 (528)
.++..|..++.+.++++|..|+.+|..++...+. ...+ ......++.++. ++|..++..+++.+..+...
T Consensus 329 ---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 329 ---RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred ---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 2566788889889999999999999999875421 1122 235777888888 89999999999998887754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-10 Score=117.34 Aligned_cols=218 Identities=15% Similarity=0.111 Sum_probs=158.3
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGD-SP 190 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~-~~ 190 (528)
+..++|. ++.|++++ ++.|..|+++|++++. ++..+..+...|++..++ .+|.+++.++|..|+++|.||+.+ .+
T Consensus 33 ~~~i~Pl-l~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPV-LKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHH-HHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHH-HHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 3455664 56789888 8999999999999997 788888899888887765 578889999999999999999954 57
Q ss_pred hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 191 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
..+..+...|++++|+.++. . ....+..+......... .....+ .++...++++|.+|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~-~--------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~ 168 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAK-A--------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLA 168 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHH-H--------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHH-h--------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHH
Confidence 78889999999999999983 2 12222222211110000 011111 123455667788888
Q ss_pred cCChHHHHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh--cccCchhHHH
Q 009700 271 DGTNDKIQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL--TQNYKKSIKK 345 (528)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~ 345 (528)
..+++....+...+.++.|+..|.+ ....++..|+.+|..++..++...+.+.+.+....+..++ ... +...+.
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~ 247 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV 247 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence 8888777888888899999998854 2457999999999999999988888787766543333222 233 445688
Q ss_pred HHHHHHHHHh
Q 009700 346 EACWTISNIT 355 (528)
Q Consensus 346 ~a~~~L~nl~ 355 (528)
.+|+++.|+.
T Consensus 248 la~giL~Ni~ 257 (684)
T 4gmo_A 248 MACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 8999999974
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=83.64 Aligned_cols=216 Identities=15% Similarity=0.178 Sum_probs=175.8
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 236 (528)
..++..++.+|.++-..++.+|+..+.+++...|+..+. .+..|+.++.++....+......++..++...|
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 346788999999988999999999999999998876555 456677787778888888888899999987654
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
..+.+.+|.+..-..-.|+.++.....+|..++..++.... +++.-+..++.+++..-+..|+..++.+.....
T Consensus 103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 55678899998888888999999999999999988875543 366778999999888788888888888876554
Q ss_pred chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 317 TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 317 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
... ..++|.|..+|.+. +.-||..|..+|.+++..++..+..+ ..-+.-+.+.+..+++.+..+|+.+
T Consensus 177 ~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 177 KYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 433 24789999999998 99999999999999999888854322 2344556777888999888888887
Q ss_pred cC
Q 009700 397 TS 398 (528)
Q Consensus 397 ~~ 398 (528)
+.
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-08 Score=96.11 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=164.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
....+++.+.++|...+...--.+..+.... ++.+ =++..|.+=+++++ +-++-.|+++|++|.. ++...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 3567788999999999998888887766541 2222 14777888888888 9999999999999987 33333
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +.+.+.+.|.+.++-+|..|+.+...+....|+.. .+++..+-.++ .+.++.++.+|+.+|..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 35778889999999999999999999998888632 25788888888 7788889999999999998753
Q ss_pred CCCChhhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhccCC-hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 233 PPAPFDQVRPALAALQHLIFSS---DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
...+..|+..+... ++-.+...++.+..++..+ +. ....+++.+..+|++.++.|...|++++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 12334444444332 4555566666666665543 21 1234778888889999999999999999
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHH
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 388 (528)
..+....... . ..++..+..+|.++ ++.+|..|+..|..+....|..++. .-..+.+++.+++..+...
T Consensus 275 ~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 9886532221 1 23456777888888 9999999999999998877765542 3445677788888888776
Q ss_pred HHHHHH
Q 009700 389 ASWAIS 394 (528)
Q Consensus 389 a~~aL~ 394 (528)
|..+|.
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-08 Score=105.36 Aligned_cols=274 Identities=16% Similarity=0.145 Sum_probs=189.5
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-------ChHHHHHHHHHHHHH
Q 009700 74 IPSMVQGVL---SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-------LPQLQFEAAWALTNI 143 (528)
Q Consensus 74 l~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~v~~~a~~~L~~l 143 (528)
+..|-..|. ++++.++.-|+..|.-+-.+.. .. ++..|...|.+++ .+.++..|+..|+-+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 445555555 5667788888888876655431 11 3667777776543 267888999999998
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHH
Q 009700 144 ASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATW 223 (528)
Q Consensus 144 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~ 223 (528)
..|+... .+++.|..+|.+++..+++.|+.+|+-+-.+... .+ ++..|+..+..+.+..+++.++.
T Consensus 465 ~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHHH
Confidence 7655321 1457778888877778888999999987433221 11 35666666655667889999999
Q ss_pred HhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhH
Q 009700 224 TLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVL 301 (528)
Q Consensus 224 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~ 301 (528)
+|..+..+.+ ..++.++..|. +.++.++..++.+++.-..+.... ..++.|++.+ .+.+..++
T Consensus 531 gLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VR 595 (963)
T 4ady_A 531 GLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVR 595 (963)
T ss_dssp HHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHH
T ss_pred HHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHH
Confidence 9998876643 23455555554 567888888887776443332211 1345444444 45677899
Q ss_pred HHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC
Q 009700 302 VPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
..|+.+||.+..+.++ .++.++.+|.+..++.+|..|+++++.++++++.. .++..|..+..+.
T Consensus 596 raAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~ 659 (963)
T 4ady_A 596 RAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS
T ss_pred HHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCC
Confidence 9999999998877653 24455665544449999999999999999876531 2566788888999
Q ss_pred ChHHHHHHHHHHHHhcCCCC
Q 009700 382 EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 382 ~~~v~~~a~~aL~nl~~~~~ 401 (528)
+..|+..|+.+|+.+..+.+
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999987654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-08 Score=85.25 Aligned_cols=226 Identities=18% Similarity=0.148 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
...+..|..+|...|+.++..++.++..+....+.......-..+++.++.++.+.+..+...|++|++.+..+.+-.-+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788899999999999999999999999876544444443345899999999999999999999999999987664332
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.+. .+...+..++.++ ++-++.+|+-.++-+--.+.. .+++..+..++.+.++.++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 2456788889877 999999999999988332211 135677888889999999999999999998743
Q ss_pred -CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCC
Q 009700 401 -TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDN 478 (528)
Q Consensus 401 -~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~ 478 (528)
+++. -.+++.-+-.+|++.|+.+++.++.++..++...-. .|..-.. .+....+..|. -...
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~~~~~~---~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------ENVKIEL---LKISRIVDGLVYREGA 245 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SCCHHHH---HHHHHHHHHGGGCSSC
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------HhHHHHH---HHHHHHHHHHHHhcCC
Confidence 2222 134677788899999999999999999999976322 1111111 23456667777 6788
Q ss_pred HHHHHHHHHHHHHh
Q 009700 479 NEIYEKAVKLLERY 492 (528)
Q Consensus 479 ~~v~~~a~~ii~~~ 492 (528)
|.++.+|..+.+..
T Consensus 246 ~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 246 PIIRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998887654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6.8e-09 Score=109.79 Aligned_cols=212 Identities=16% Similarity=0.105 Sum_probs=150.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCC-Ch
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA-PF 237 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~-~~ 237 (528)
+.++++.|++++++.|..|+++|+||+. ++..+..+...+++.+++..+..+++.+++..++++|.||+... +.. ..
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 4446677999999999999999999996 56688899999999887765448889999999999999999764 211 22
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC---hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT---NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
....++++.|..++... ...+....... ....+.+ + +.+...++.+|++++.+
T Consensus 115 l~~~~il~~L~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~-----~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAV--------LETLTTSEPPFSKLLKAQQRL-----V-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHTTHHHHHHHHHHHH--------HHHHHCBTTBGGGSCHHHHHH-----H-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhh--------HHHHhhhccccccccHHHHHH-----H-----------HHHHHHHHHHHHHHHhC
Confidence 23367888888777532 11222221110 1111110 0 12445677788889888
Q ss_pred CcchhHHHhccCChHHHHHHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHH---HHHHHHccCChHHHHHH
Q 009700 315 DDTQTQCVIDNQGLPRLYQLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIEANIIA---PLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 315 ~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~---~L~~ll~~~~~~v~~~a 389 (528)
++.....+...+.++.|+..|.+.. ...++..|+.+|.+++.+++..++.+.+.+... .+.. +...+...+..+
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~~~~~~la 249 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGTDPRAVMA 249 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSSCTTHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCCcHHHHHH
Confidence 8877777888899999999985441 457999999999999999999999888766433 3333 334444567788
Q ss_pred HHHHHHhc
Q 009700 390 SWAISNAT 397 (528)
Q Consensus 390 ~~aL~nl~ 397 (528)
++.|.|+.
T Consensus 250 ~giL~Ni~ 257 (684)
T 4gmo_A 250 CGVLHNVF 257 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 99999874
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-07 Score=75.58 Aligned_cols=218 Identities=13% Similarity=0.155 Sum_probs=170.1
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDK 276 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~ 276 (528)
+..++..++.+| +++-..++.+++..+++++...| ......+..|+.+++ +.-.........+++.++...++.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445678888888 77778899999999999997654 345667777777765 445667778889999999887766
Q ss_pred HHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 277 IQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 277 ~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+.. ++|.+..-..-.++.++....++|+.++..++.... +++.-+..++.++ +..-|-.|+.+|+.+..
T Consensus 105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred HHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 553 678888888889999999999999999998887554 3456788999987 87778888888888865
Q ss_pred CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH
Q 009700 357 GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436 (528)
Q Consensus 357 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l 436 (528)
.....+ ...+|.|+.+|.+.+.-||..|..+|.+++... +..++. +...+.-++..+..+...+-++|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 555443 347899999999999999999999999999964 554443 33344557777788888888899
Q ss_pred HHHHHhh
Q 009700 437 ENILKIG 443 (528)
Q Consensus 437 ~~i~~~~ 443 (528)
..+.-..
T Consensus 242 ~rl~l~e 248 (253)
T 2db0_A 242 SRLLLLE 248 (253)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 8887543
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-06 Score=84.99 Aligned_cols=321 Identities=12% Similarity=0.121 Sum_probs=197.0
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---hHHHHHHhcCCh-HHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 158 GAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSP---SCRDLVLSHGAL-MPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 158 g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~~g~i-~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.++..++.+|.. ...++.+..+..+..+..+.| .....+.+.... ..+.......++.-.+..++.++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 467888888876 778999999999999987776 333333333222 223332224445555566666666665443
Q ss_pred CCCChhhhHHHHH--HHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHh--CcHHHHHHHhcC----C-------
Q 009700 233 PPAPFDQVRPALA--ALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLH----S------- 296 (528)
Q Consensus 233 ~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~----~------- 296 (528)
+. .......++. -+...|... +...+.-++.++..|...+. ....+.+. ..++.++.++.. .
T Consensus 157 ~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred Cc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 22 2333344444 444555542 34445567777777776543 44444433 245666544331 1
Q ss_pred ------ChhhHHHHHHHHhHhhcCCcchhHHHhccCCh--HHHHHHhcccCchhHHHHHHHHHHHHhcCCH----HHHHH
Q 009700 297 ------STTVLVPALRTVGNIVTGDDTQTQCVIDNQGL--PRLYQLLTQNYKKSIKKEACWTISNITAGSR----SQIQA 364 (528)
Q Consensus 297 ------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~ 364 (528)
...++..++.|++-++-..+ ....+...++. ..|+.+++.....++-+-++.++.|+....+ ..+..
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 24567889999998886544 44445555533 5666777766578999999999999987542 22332
Q ss_pred -HHHcCcHHHHHHHHccC---ChHHHHHHHHHHHH---------------------hcCCCCH--------HHHHHHHHC
Q 009700 365 -VIEANIIAPLVYLLQHA---EFEVKKEASWAISN---------------------ATSGGTR--------EQIQFLVSQ 411 (528)
Q Consensus 365 -l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~n---------------------l~~~~~~--------~~~~~l~~~ 411 (528)
++..++ +.++..|... |+++....-..... ...+.+. +....+.++
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 333445 4455556543 56665433222111 1122111 111122211
Q ss_pred --CChHHHHhhcCC----------CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCH
Q 009700 412 --GCIKPLCDLLVC----------PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNN 479 (528)
Q Consensus 412 --~~l~~L~~ll~~----------~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~ 479 (528)
.+++.|+.+|++ .|+.++.+||.=|..+++..+.+ ...+++.||.+.+..|+.|+|+
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-----------r~i~~~lg~K~~VM~Lm~h~d~ 461 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-----------IDVLDKTGGKADIMELLNHSDS 461 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-----------HHHHHHHSHHHHHHHHTSCSSH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-----------hHHHHHcCcHHHHHHHhcCCCH
Confidence 357889999973 47888999999999999988764 4567899999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 009700 480 EIYEKAVKLLERYW 493 (528)
Q Consensus 480 ~v~~~a~~ii~~~~ 493 (528)
+|+..|...+.++.
T Consensus 462 ~Vr~~AL~avQklm 475 (480)
T 1ho8_A 462 RVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-08 Score=90.52 Aligned_cols=186 Identities=15% Similarity=0.210 Sum_probs=144.5
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 203 ~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
+.+...+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.+++.++..-.......+
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3467777 788899999999999999876332222234678899999995 88999999999999999865333333333
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHH
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRS 360 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 360 (528)
. .+++.++..+.+.+..++..|..++..++....- . .+++.+...|.+. ++.+|..++..|+.+... .+.
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3 3899999999999999999999999999875431 1 3567888999988 999999999999997653 333
Q ss_pred H-HHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 361 Q-IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 361 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
. ....+. .++|.|..++.+.++++|..|..+++.++..
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 122223 5899999999999999999999999998764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-06 Score=91.88 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=187.7
Q ss_pred HHHHHHHhcCCC--------HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 74 IPSMVQGVLSEN--------SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 74 l~~l~~~l~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+..|...+.+++ +.++..|+..|.....+..++ .+++.|...|.+++ ..++..|+.+|+.+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 455566665444 556777777777554443222 24677888888776 6777788899998755
Q ss_pred CChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLL-GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
|+.... ++..|+..+ ...+..++..++.+|+.+....+. .++.++..|..+.++.++..++.+
T Consensus 502 GTgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 433211 234455443 456789999999999999766654 477888888667788888888888
Q ss_pred hhhhcCCCCCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhHH
Q 009700 225 LSNFCRGKPPAPFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVLV 302 (528)
Q Consensus 225 L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 302 (528)
++.-+.+... ...++.|++.+ .+.++.++..|..+|+.+.-+.+ ..++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHH
Confidence 8765555322 24455444443 45678899999999998876654 2456666644 568899999
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHH----HHHHHHcCcHHHHHHHH
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ----IQAVIEANIIAPLVYLL 378 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~ll 378 (528)
.|..+||.++.+++... +++.|..++++. +..||..|+.+|+.+..++.+. +.. +...|...+
T Consensus 631 gAalALGli~aGn~~~~-------aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQS-------AIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCHH-------HHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHH-------HHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence 99999999998877522 355788888888 9999999999999998864443 222 334455666
Q ss_pred cc--CChHHHHHHHHHHHHhcC
Q 009700 379 QH--AEFEVKKEASWAISNATS 398 (528)
Q Consensus 379 ~~--~~~~v~~~a~~aL~nl~~ 398 (528)
.+ .++..+--|..|.+-+-.
T Consensus 698 ~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTT
T ss_pred hcccccHHHHHHHHHHHHHHhc
Confidence 54 467788888888776644
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=89.58 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 009700 85 NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV 164 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 164 (528)
++.-...++..+-.+...+..-+..++ ..+.+..++++.+++ ..++.-....+.+++...++. ++ ++..|.
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---iL---v~Nsl~ 110 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---II---VTSSLT 110 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---GG---GHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---HH---HHHHHH
Confidence 444444445444444443312222222 235677788999988 899998888888888753332 22 568888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHH
Q 009700 165 QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPAL 244 (528)
Q Consensus 165 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 244 (528)
+=+.++++-+|-.|+++|++|.... .-+. ..+++-+.| .+.++.++..|+.+...|....| ..+.+.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~ 178 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----DVVKRWV 178 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----HHHHTTH
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----HHHHHHH
Confidence 8899999999999999999996443 1111 345666777 88899999999999999986644 2445778
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC---ChhhHHHHHHHHhHhhcCC-cchhH
Q 009700 245 AALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS---STTVLVPALRTVGNIVTGD-DTQTQ 320 (528)
Q Consensus 245 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~al~~L~~l~~~~-~~~~~ 320 (528)
+.+..++.+.++.++..|+.++..+...+.. .+..++..+... ++-.+...+++++.++..+ +...
T Consensus 179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~- 248 (355)
T 3tjz_B 179 NEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD- 248 (355)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-
Confidence 8888999999999999999999999876532 233444444432 4555566777777776654 2222
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
..+++.+.++|++. ++.|..+|+++|..+...... .. ..++..|..++.++++.+|-.|+..|..++...
T Consensus 249 ----~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 249 ----SPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred ----HHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 34667888888888 999999999999998542221 11 235667777888999999999999998887743
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
|..... +-.-+.+++.++|..+...|+ ..+++-|
T Consensus 319 -P~~v~~-----~n~~ie~li~d~n~sI~t~Ai---ttllktg 352 (355)
T 3tjz_B 319 -PSAVTA-----CNLDLENLVTDANRSIATLAI---TTLLKTG 352 (355)
T ss_dssp -------------------------------------------
T ss_pred -cHHHHH-----HHHHHHHHccCCcHhHHHHHH---HHhhhcc
Confidence 333222 344566778888877655444 4445433
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-07 Score=84.80 Aligned_cols=188 Identities=9% Similarity=0.058 Sum_probs=139.3
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc-ccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT-QNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 286 l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
-+.+...+.+.+|..|..|+..|..++.+.+......+ ..+++.|...+. +. +..++..|+.+++.++.+-......
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34577888999999999999999999876332111111 245777888885 77 9999999999999998632222222
Q ss_pred HHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+ ..++|.++..+.+.+..+|..|..+|..++...+.+ .+++.+...+++.++.++..++..|..++....
T Consensus 95 ~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~--------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE--------AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 238999999999999999999999999998865422 257788889999999999999999999876542
Q ss_pred hchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 445 ADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.... +...+. ..++.|..+.++++++|+..|...+..+..
T Consensus 166 ~~~~--------~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTAL--------NKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGC--------CHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCc--------cHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1100 112221 236788888899999999999888877653
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-07 Score=77.49 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=146.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+.+..+.++|...++.++..++.+|..+....+.......=..+++.++.++.+. +.++.-.|..++..+..+.|-.-.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence 4677899999999999999999999999987654443343346889999999988 999999999999999875332222
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
.+.. +...|.+++.+++.-++.+|+..++.+-..... .+++..+..++.+.|+++...++.++.++....
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 2222 566788999999999999999999998332211 124667888899999999999999999999876
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
++... + .+.++-+-.+..++|+.+.++|..+++..++.
T Consensus 182 ~D~~i--------~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 182 ADSGH--------L------TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SSCCC--------G------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHH--------H------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 54321 1 22345567888999999999999999998874
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-07 Score=82.50 Aligned_cols=191 Identities=9% Similarity=0.088 Sum_probs=141.6
Q ss_pred HHHhhccchhhHHHHHHHHHhhh-hcCCCCCCC--hhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCh-HHHH-
Q 009700 205 LLAQLNEHSKLSMLRNATWTLSN-FCRGKPPAP--FDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTN-DKIQ- 278 (528)
Q Consensus 205 Ll~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~-~~~~- 278 (528)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ ...+..++..++.+++.++.+-. ..+.
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44556 67788899999999999 876543322 223457788899999 68899999999999999986422 1222
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS 358 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 358 (528)
.... .+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2232 2789999999999999999999998888875432110000113567888999998 9999999999999998633
Q ss_pred H---HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 359 R---SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 359 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+ ......+...++|.|..++.+.++.+|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 334344424699999999999999999999999988764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-05 Score=84.96 Aligned_cols=342 Identities=11% Similarity=0.060 Sum_probs=197.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC------hh
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT------SE 149 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~------~~ 149 (528)
.++..+.+.+..++...+.++..++...-...+ .+++|.|++++++++ +..+..++.+|..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 455555556688888888899988876422233 456999999998877 788899999999998722 12
Q ss_pred hHHH---HHhcCChHHHHHh-------hCCCCH---------HHHHHHHHHHHHhhC-CChhH-HHHHHhcCChHHHHHh
Q 009700 150 HTRV---VIEHGAVPKFVQL-------LGSASD---------DVREQAVWALGNVAG-DSPSC-RDLVLSHGALMPLLAQ 208 (528)
Q Consensus 150 ~~~~---i~~~g~i~~L~~l-------L~~~~~---------~i~~~a~~~L~nl~~-~~~~~-~~~~~~~g~i~~Ll~l 208 (528)
.+.. ++. ...+.++.+ +..+.. ++...++.+++++.. +.+.. .+.+. ..++.+...
T Consensus 163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~ 239 (960)
T 1wa5_C 163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHH
Confidence 2221 111 123433332 443211 233446666666642 33321 11111 123334444
Q ss_pred hccc-----h---------hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhh
Q 009700 209 LNEH-----S---------KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-----SSDEEVLTDACWALSYL 269 (528)
Q Consensus 209 l~~~-----~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l 269 (528)
+... . ...++..++.+|..+....+..-......+++.+...+. ..++.+...++..+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 4210 0 124677778888877654322111233455555566554 34578888888888887
Q ss_pred ccCChHHHH-----HHHHhCcH-HHHHHHhc-----------------------CCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 270 SDGTNDKIQ-----AVIEAGVC-PRLVELLL-----------------------HSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 270 ~~~~~~~~~-----~~~~~~~l-~~L~~lL~-----------------------~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
+.... ... .++. .++ ..++..+. ......+..|..+|..++...+..
T Consensus 320 ~~~~~-~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 320 TRIPK-YFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HTSHH-HHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred hCcHh-HHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 75422 111 1111 122 22233331 111256777888888888655421
Q ss_pred HHhccCChHHHHHHhc------ccCchhHHHHHHHHHHHHhcCC---H---H------HHHHHHHcCcHHHHHHHHccC-
Q 009700 321 CVIDNQGLPRLYQLLT------QNYKKSIKKEACWTISNITAGS---R---S------QIQAVIEANIIAPLVYLLQHA- 381 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~---~---~------~~~~l~~~~~i~~L~~ll~~~- 381 (528)
++. .+++.+.+.+. +. +...|..|+.+++.++.+. . . ....++..-++| .+.++
T Consensus 396 -v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~ 468 (960)
T 1wa5_C 396 -VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNN 468 (960)
T ss_dssp -HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSS
T ss_pred -HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCC
Confidence 111 23445555555 34 6788999999999997531 1 0 222222212333 34555
Q ss_pred --ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 382 --EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 382 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
++.+|..|+|+++.++..-.++.... +++.++..|.++++.++..++.+|.+++..
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 88999999999999988655544333 577888888888899999999999999874
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=4e-07 Score=83.25 Aligned_cols=193 Identities=11% Similarity=0.107 Sum_probs=140.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhHHHHHHh-cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC-CCCh-
Q 009700 162 KFVQLLGSASDDVREQAVWALGN-VAGDSPSCRDLVLS-HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PAPF- 237 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 237 (528)
.+...+.+.++.-|..++..|.. ++.+++.......+ ..++..|...+.++.+..++..++.+|..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87544332100000 12355566666567788899999999999996543 2222
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHH-HHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
.....++|.++..+.+....|+..+..++..++...+...... .+ .+++.|...|++.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4567789999999998889999998888888776431100000 11 267889999999999999999999999997655
Q ss_pred c---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 317 T---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 317 ~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
. .....+...+++.+.+++.++ ++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3 222233247899999999998 99999999999999874
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-08 Score=83.53 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
...++.+..+|.++++.++..++++|+.+... .++.|+.+|.++++.++..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 45677888999999999999999999876532 25788899999999999999999998863
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
...++.|..+|.++ ++.||..|+|+|+++.. + ..++.|+.++.+.++.++..|+++|..+
T Consensus 72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12467889999888 99999999999999852 2 2578889999999999999999998753
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-05 Score=87.64 Aligned_cols=335 Identities=10% Similarity=-0.026 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhc---------------CCCChHHHHHHHHHHHHHhcCCh--h
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLD---------------RHDLPQLQFEAAWALTNIASGTS--E 149 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~---------------~~~~~~v~~~a~~~L~~l~~~~~--~ 149 (528)
.++..++.++...+.....+. . ....+++.+.. |. +.++++++..|+.++..+....+ +
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~-~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTI-E--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCG-G--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCc-c--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 567777777776665210111 1 33456776666 41 11237899999999999998422 1
Q ss_pred hHHHHHhcCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCChhH-H-----------HHHHhcCChHHHHH
Q 009700 150 HTRVVIEHGAVPKFVQL-------LGSAS---DDVREQAVWALGNVAGDSPSC-R-----------DLVLSHGALMPLLA 207 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~l-------L~~~~---~~i~~~a~~~L~nl~~~~~~~-~-----------~~~~~~g~i~~Ll~ 207 (528)
....+. .++|.++.+ +...+ .+.....+..+..++...+.. . ..+. ..++.++.
T Consensus 280 ~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~ 355 (971)
T 2x1g_F 280 YPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILH 355 (971)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHH
T ss_pred cHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHH
Confidence 111111 123333332 23334 266666677777666433221 1 1111 13344444
Q ss_pred hhcc----chhhHHHHHHHHHhhhhcCCC--------CCCCh----hhhHHHHHHHHHHhcCCCH---------------
Q 009700 208 QLNE----HSKLSMLRNATWTLSNFCRGK--------PPAPF----DQVRPALAALQHLIFSSDE--------------- 256 (528)
Q Consensus 208 ll~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~----~~~~~~l~~L~~ll~~~d~--------------- 256 (528)
+... ..+..+...+++.+..++... ..... .....+++.++..+..++.
T Consensus 356 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~ 435 (971)
T 2x1g_F 356 CTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFR 435 (971)
T ss_dssp HHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHH
T ss_pred HHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHH
Confidence 4322 246778889999888876511 11111 1224455555555532211
Q ss_pred HHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcC-----CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHH
Q 009700 257 EVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLH-----SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPR 330 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 330 (528)
..+..+..++..++..-+ ..... +++.+...+.+ .++..++.++.+++.++.+........+. .+++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~ 509 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRV 509 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHH
Confidence 244555556666554433 22222 33334444433 67889999999999999876542211111 12332
Q ss_pred HHHHhc-ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 331 LYQLLT-QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 331 L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
+..+.. +. ++.+|..++|+++.++.......+.+ ..+++.|+..+ + +.++..|++++.+++..+......++-
T Consensus 510 l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~ 583 (971)
T 2x1g_F 510 LAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD 583 (971)
T ss_dssp HHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 222221 34 78999999999999975111111111 13567777777 3 789999999999999765444334432
Q ss_pred HCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhh
Q 009700 410 SQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 410 ~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~ 443 (528)
.++..+..++.. -+.+.+..+++++..++...
T Consensus 584 --~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 584 --PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp --HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 367777777776 35678888999999998753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-08 Score=81.66 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=93.8
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
...++.|+.+|++++ +.++..|+++|+.+.. ..++.|+.+|.++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 445788999999887 8999999999987643 136889999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYL 269 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 269 (528)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1478888888 77889999999999999862 36789999999999999999999998764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-05 Score=88.04 Aligned_cols=297 Identities=10% Similarity=0.083 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhHHHHHHhc-----
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG------SASDDVREQAVWALGNVAGDSPSCRDLVLSH----- 199 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~----- 199 (528)
..+..|..+|..++...+ +.+.. .+++.+...+. +.+...++.|+.+++.++......... ...
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccc
Confidence 466777778887777332 12211 13344444454 467889999999999998532100000 000
Q ss_pred CCh----HHHHHhhccch---hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 200 GAL----MPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 200 g~i----~~Ll~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
... ..++..+ .++ ++-++..++|+++.++..- .......+++.++..|.+++..|+..|++++.+++..
T Consensus 451 ~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 451 NVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 111 1233344 333 7889999999999999763 2345678899999999888899999999999998864
Q ss_pred C-----------hHHHHHHHHhCcHHHHHHHhcCCC-----hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh-
Q 009700 273 T-----------NDKIQAVIEAGVCPRLVELLLHSS-----TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL- 335 (528)
Q Consensus 273 ~-----------~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL- 335 (528)
. .+.....+. .+++.|+.++.... ......++.+++.++....+....... .+++.|...+
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~ 604 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVT 604 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH
Confidence 1 112222222 36667777777641 113345667777665432221111111 2334444444
Q ss_pred ---cccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 336 ---TQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 336 ---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
+++.++..+..++.+|+.++.. .++....+ ...++|.+..++.....+....+..++..+.... .....++.
T Consensus 605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~-- 680 (960)
T 1wa5_C 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIK-- 680 (960)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTG--
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHH--
Confidence 3333567777788889888864 44444333 3457899999888776667777777776665432 01111111
Q ss_pred CChHHHH--hhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 412 GCIKPLC--DLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 412 ~~l~~L~--~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+++.+. ..+... ..+..++.+|..++..+.
T Consensus 681 ~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~ 713 (960)
T 1wa5_C 681 PLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDS 713 (960)
T ss_dssp GGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhCh
Confidence 1344444 444433 244456666777665543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=98.46 E-value=6.6e-05 Score=82.44 Aligned_cols=340 Identities=12% Similarity=0.114 Sum_probs=186.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV-EFLDRHDLPQLQFEAAWALTNIASGT---S--EHTRVVIE 156 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~i~~ 156 (528)
+.++++...++.++...++- -+...+++.++++.+. .+|. + ++++..|+.||..+.+.. + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 35566777788888877753 4567788899999999 8885 3 789999999999998722 2 12211111
Q ss_pred --cCChHHH-----------HHhh---CCCCHHHHHHHHHHHHHhhCC-------ChhHHHHHHhcCChHHHHHhhccch
Q 009700 157 --HGAVPKF-----------VQLL---GSASDDVREQAVWALGNVAGD-------SPSCRDLVLSHGALMPLLAQLNEHS 213 (528)
Q Consensus 157 --~g~i~~L-----------~~lL---~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~Ll~ll~~~~ 213 (528)
.+.++.+ ...+ ...+.+..+..+.++..+... .+..+..+. .++..|+.+- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 1111 123456666666666554321 122222221 1223444433 445
Q ss_pred hhHHHHHHHHHhhhhcCCC--CCCChhhh----HHHHHHHHHHhcCCC--------------------HH-HHHHHH-HH
Q 009700 214 KLSMLRNATWTLSNFCRGK--PPAPFDQV----RPALAALQHLIFSSD--------------------EE-VLTDAC-WA 265 (528)
Q Consensus 214 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~----~~~l~~L~~ll~~~d--------------------~~-v~~~a~-~~ 265 (528)
+.++...++..-..|+..- ........ ..+++.++.-+.-++ ++ ..-... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 6677666665554554321 11122223 344555554444322 00 010000 22
Q ss_pred HHhhccCC-hHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcc-----
Q 009700 266 LSYLSDGT-NDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ----- 337 (528)
Q Consensus 266 l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----- 337 (528)
|.+++.-. ++.... +++.+...+.. .+|..++.+++++|.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22222211 111111 33444444443 579999999999999998765432222223467778888764
Q ss_pred cCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH--------
Q 009700 338 NYKKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ-------- 406 (528)
Q Consensus 338 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~-------- 406 (528)
. ...++..++|++|..+. ..++... .++..|+..+...++.++..||+++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 3 45567788999999875 2333222 25566777777778899999999999999865432210
Q ss_pred HHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 407 FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++- .++..+...+..-++.-...+.+++..++...+
T Consensus 586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 123334444444566666777888888777654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-05 Score=84.41 Aligned_cols=303 Identities=13% Similarity=0.145 Sum_probs=207.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--EH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~ 150 (528)
.+..+++.+...+...+..++..+..++....... .+..+++..|...+.+..++ +.|+.++..++.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 45667777776555566777888888776431111 11136788888888765423 888899999985321 12
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
.+.++ .+.+|.++..+.+....++..|..++..++...+...- ..+++.|+..|........+..++.++..|+.
T Consensus 89 ~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 89 VEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp THHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 22222 26889999999888899999999888888744332211 22578888888555578899999999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
..|......+..++|.+...+.+..++|...+..++..+|.--+ ..+. ..+|.|+..+.+++. ...++..|+
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~ 236 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLG 236 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHT
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhh
Confidence 65433334557889999999999999999998888887775211 1111 478999999998854 455666666
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCcHHHHHHHHcc-CChHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA--GSRSQIQAVIEANIIAPLVYLLQH-AEFEVK 386 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~ 386 (528)
.-+--.....-.+ +-.+|.|..-|... ...+++.++-++.|+|. .+|.....++. .++|.|-..... .+|++|
T Consensus 237 ~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 237 ATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp TCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHH
T ss_pred cCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHH
Confidence 5443222211111 12355666666666 78899999999999997 67877776664 478887776654 489999
Q ss_pred HHHHHHHHHhc
Q 009700 387 KEASWAISNAT 397 (528)
Q Consensus 387 ~~a~~aL~nl~ 397 (528)
..|..|+..+.
T Consensus 313 ~~~~~a~~~l~ 323 (986)
T 2iw3_A 313 EVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887773
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-05 Score=73.04 Aligned_cols=322 Identities=13% Similarity=0.087 Sum_probs=191.2
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCC--chhHHHHhcCc-HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 73 SIPSMVQGVL-SENSGLQLEATTQFRKLLSIERC--PPIEEVIRAGV-VPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 73 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~g~-i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
....+++.|. ....++....+..+..++...+. .....+.+..- ...+...+...+++-.+..|..++..++....
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 4567888777 45677777778888888876310 11223333222 22233322234425555666666666654222
Q ss_pred hhHHHHHhcCChH--HHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcC--ChHHHHHhhcc------------
Q 009700 149 EHTRVVIEHGAVP--KFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHG--ALMPLLAQLNE------------ 211 (528)
Q Consensus 149 ~~~~~i~~~g~i~--~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~Ll~ll~~------------ 211 (528)
...+.+- ..+. -++..|.. ++...+..++.+|..+.... .+|..+.+.+ .+++++..+..
T Consensus 158 ~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 158 HNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp CCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred ccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 2111110 1112 34455554 34555677888888887654 4788876543 35666544321
Q ss_pred ----chhhHHHHHHHHHhhhhcCCCCCCChhhhHH--HHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCh----HHHH-H
Q 009700 212 ----HSKLSMLRNATWTLSNFCRGKPPAPFDQVRP--ALAALQHLIFS-SDEEVLTDACWALSYLSDGTN----DKIQ-A 279 (528)
Q Consensus 212 ----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~----~~~~-~ 279 (528)
.....++.+++.+++-|+..++........+ .++.|+..++. ..+.+.+-++.++.|+..... .... .
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~ 314 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL 314 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 1145678889999999987743111111122 33566666664 568999999999999998652 2222 2
Q ss_pred HHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHh-------hc--------------CCcchhH-HH--------h--c
Q 009700 280 VIEAGVCPRLVELLLH---SSTTVLVPALRTVGNI-------VT--------------GDDTQTQ-CV--------I--D 324 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l-------~~--------------~~~~~~~-~~--------~--~ 324 (528)
++..++ ..++..|.. .++++....-.....+ ++ -++.+.. .+ . +
T Consensus 315 ~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~ 393 (480)
T 1ho8_A 315 LLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 393 (480)
T ss_dssp HHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred HHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcc
Confidence 333444 446666654 3444332211111111 10 0111111 11 1 2
Q ss_pred cCChHHHHHHhcc---------cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHH
Q 009700 325 NQGLPRLYQLLTQ---------NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395 (528)
Q Consensus 325 ~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 395 (528)
..++..|+++|.+ +.++.+..-||.=|+.++...|..+..+-+.|+=..++++|.++|++||.+|+.|+..
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2467889999973 2278899999999999999888888877788999999999999999999999999987
Q ss_pred hcC
Q 009700 396 ATS 398 (528)
Q Consensus 396 l~~ 398 (528)
+..
T Consensus 474 lm~ 476 (480)
T 1ho8_A 474 IIG 476 (480)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-05 Score=72.78 Aligned_cols=196 Identities=19% Similarity=0.145 Sum_probs=144.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
...++.-|.+.+.+.+..++.-|..+...+.+....++..+++..|+......+...+..++++++++....+.....+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 33455566677888899999999985555566889999999999999999999999999999999999986555433344
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CcHHHHHHHHc---cCChHHHHHHH
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE--------A--NIIAPLVYLLQ---HAEFEVKKEAS 390 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~ 390 (528)
...++.++..++.+. ...|.+.|+.+|-.++..++.....+.+ . ..++.|+.+|. +.+.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 567889999999976 8999999999999998755433322222 1 24778999997 67899999999
Q ss_pred HHHHHhcCCCC-HH----HHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHH
Q 009700 391 WAISNATSGGT-RE----QIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 441 (528)
Q Consensus 391 ~aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~ 441 (528)
..|..+..+.+ .+ ....+-+.|+=..+..+++.. +++++++ +......++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~~~~ 335 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYENALK 335 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHHHhh
Confidence 88887776654 23 233444566666777777765 6677665 344444443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00015 Score=80.84 Aligned_cols=344 Identities=11% Similarity=0.094 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hh---hHHHHHh--
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT--SE---HTRVVIE-- 156 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~i~~-- 156 (528)
.+..++..++.++..++.- .+...+.+..+++.+.+.+.. + ++++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 4566778888888877653 234445667788888743322 4 899999999999998742 21 1111111
Q ss_pred cCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhCC-------ChhHHHHHHhcCChHHHHHhhccchhh
Q 009700 157 HGAVPKFVQ-LL-------------GSASDDVREQAVWALGNVAGD-------SPSCRDLVLSHGALMPLLAQLNEHSKL 215 (528)
Q Consensus 157 ~g~i~~L~~-lL-------------~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~Ll~ll~~~~~~ 215 (528)
.+.+..+.. ++ ...+.+.....+..+..+... .+..+..+. .+++.++... ..++.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHHHHH-cCCcH
Confidence 112222211 11 112344444555555443321 111222211 2355555554 44577
Q ss_pred HHHHHHHHHhhhhcC----CCCC--CChhhhHHHHHHHHHHhcCC-------------------CH---HHHHHHHHHHH
Q 009700 216 SMLRNATWTLSNFCR----GKPP--APFDQVRPALAALQHLIFSS-------------------DE---EVLTDACWALS 267 (528)
Q Consensus 216 ~~~~~a~~~L~~l~~----~~~~--~~~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l~ 267 (528)
++...++..+..++. .+.. ........+++.++..+..+ |. .....+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 777888777777766 3211 11223355566666554321 10 12223444555
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhc--CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcc-----cCc
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLL--HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ-----NYK 340 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~ 340 (528)
.++...+.. ++. -+.+.+-..+. ..+|..+..+++++|.++.+.......-+-..+++.+..+... + +
T Consensus 439 ~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~ 513 (1049)
T 3m1i_C 439 YLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K 513 (1049)
T ss_dssp HHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred HHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence 555332211 111 13344445554 3678889999999999986544321111111244445443321 2 5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH--------HHHHHCC
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI--------QFLVSQG 412 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~~ 412 (528)
+.++..++|+++.++.-....-+ .+ ..+++.++..+.+.++.|+..|++++.+++..+..... .++- .
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~-~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~--~ 589 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWN-FL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ--T 589 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHH-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH--H
Confidence 56666799999988642111111 12 13677788888888899999999999999985443221 1211 2
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++..+..++..-+.+-...+.+++..++...+
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 34444455555555555667788877776543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00043 Score=76.52 Aligned_cols=339 Identities=12% Similarity=0.097 Sum_probs=189.8
Q ss_pred cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCC
Q 009700 125 DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL---GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGA 201 (528)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~ 201 (528)
.+.+ ...+..++++++.++.+-.+.. ...++.++..+ ..+++.++..++|+++.++..-....+. + ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l-~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-I-NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-H-TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-H-HHH
Confidence 3344 6788999999999998543211 12334444433 3357889999999999997432111122 2 247
Q ss_pred hHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCh-HHHH
Q 009700 202 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTN-DKIQ 278 (528)
Q Consensus 202 i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~ 278 (528)
++.++..+ .+ +.++..|++++.+++...+..-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77788877 33 7899999999999997543222334567777777777753 56788888889998876543 3444
Q ss_pred HHHHhCcHHHHHHHhc----CC-ChhhHH---HHHHHHhHhhcCCcc---------------------hhHHHhccCChH
Q 009700 279 AVIEAGVCPRLVELLL----HS-STTVLV---PALRTVGNIVTGDDT---------------------QTQCVIDNQGLP 329 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~----~~-~~~v~~---~al~~L~~l~~~~~~---------------------~~~~~~~~~~l~ 329 (528)
..++. +++.+...+. .. ++..+. ..+.+|+.++..-.. ..-..+-..+++
T Consensus 608 ~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 43333 4544444442 22 333333 455555555432110 000111223455
Q ss_pred HHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH----Hcc-CChHHHHHHHHHHHHhcC--CCC
Q 009700 330 RLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYL----LQH-AEFEVKKEASWAISNATS--GGT 401 (528)
Q Consensus 330 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l----l~~-~~~~v~~~a~~aL~nl~~--~~~ 401 (528)
.+..++... .+..+.+.+|.++..++....+... ..+|.++.. +.. +.+ ..++.++.++. +..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 555555432 1568899999999987642111111 123433333 222 222 23344444433 221
Q ss_pred H---HHHHHHHHCCChHHHHhhcC---CCChHHHHHHHHHHHHHHHhhhhchhccCCcchh-hHHHhhhcccHHHHHHHh
Q 009700 402 R---EQIQFLVSQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKIGEADKEAGSTTANV-YSEMIDECDGLDKIENLQ 474 (528)
Q Consensus 402 ~---~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~l~~L~ 474 (528)
+ ..+..+.+ .++..+..++. ..+++++......+..++......-... .. +... ++.+....
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~----~~~~~~i------~~~~~~~l 826 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCE----RLDVKAV------FQCAVLAL 826 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCT----TSCHHHH------HHHHHHHT
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCC----cccHHHH------HHHHHHHc
Confidence 1 12221111 12333333332 2468999999999999998776432110 00 1111 23344445
Q ss_pred cCCCHHHHHHHHHHHHHhcCC
Q 009700 475 SHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 475 ~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+++.++...+..++..++..
T Consensus 827 ~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 827 KFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 689999999999999988754
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00011 Score=81.21 Aligned_cols=330 Identities=12% Similarity=0.059 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hhHHH---HHh--cCCh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--EHTRV---VIE--HGAV 160 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~---i~~--~g~i 160 (528)
+...++.++...+... .... ....+++.+++++. + ++++..|+.++..+..... ..... ++. .+..
T Consensus 218 ~~~~~l~~l~~wi~~~-~~~~---~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~ 290 (963)
T 2x19_B 218 VRQKVLKCFSSWVQLE-VPLQ---DCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQ 290 (963)
T ss_dssp HHHHHHHHHHHHHTSS-CCGG---GTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCC-CCcc---cchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhH
Confidence 5555666655444321 1110 12445777777774 3 6789999999999998432 11111 111 1122
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHh--------cCChHHHHHhhcc----chhhHHHHHHHHHhhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLS--------HGALMPLLAQLNE----HSKLSMLRNATWTLSNF 228 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--------~g~i~~Ll~ll~~----~~~~~~~~~a~~~L~~l 228 (528)
+.+...+...+.+.....+.++..++...+. .+.. ...+..++.+... ..+..+...++..+..+
T Consensus 291 ~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l 367 (963)
T 2x19_B 291 EQLRQAVQNGDMETSHGICRIAVALGENHSR---ALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL 367 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH---HHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHH
Confidence 3232333344555555666666666532211 1110 1234444444422 12444555555555555
Q ss_pred cCCCCC-------CCh----hhhHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHhhccCChHHHHHHHH
Q 009700 229 CRGKPP-------APF----DQVRPALAALQHLIFSSDEE---------------VLTDACWALSYLSDGTNDKIQAVIE 282 (528)
Q Consensus 229 ~~~~~~-------~~~----~~~~~~l~~L~~ll~~~d~~---------------v~~~a~~~l~~l~~~~~~~~~~~~~ 282 (528)
+..... ... ..+..+++.++..+..++++ .+..+..++..++..... .++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~ 444 (963)
T 2x19_B 368 QDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLS 444 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHH
Confidence 442100 001 12234455555555432211 123333344443321110 1111
Q ss_pred hCcHHHHHHHh----cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh---cccCchhHHHHHHHHHHHHh
Q 009700 283 AGVCPRLVELL----LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL---TQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 283 ~~~l~~L~~lL----~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~ 355 (528)
-+++.+...+ .+.++..+..++++++.++.+..... ...++.++..+ ..+ ++.++..++|+++.++
T Consensus 445 -~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~ 517 (963)
T 2x19_B 445 -NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALS 517 (963)
T ss_dssp -HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTH
T ss_pred -HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHH
Confidence 1334444555 56788899999999999998754321 12334444443 334 6789999999999997
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHH
Q 009700 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCL 433 (528)
Q Consensus 356 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l 433 (528)
....... ..+ ..+++.++..|.+ +.|+..|+++|.+++..+......++ ..++..+..++.. -+...+..++
T Consensus 518 ~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 518 EWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp HHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHH
Confidence 5211111 222 3688889888854 78999999999999864432211221 1245555566654 2567888889
Q ss_pred HHHHHHHHhh
Q 009700 434 EGLENILKIG 443 (528)
Q Consensus 434 ~~l~~i~~~~ 443 (528)
+++..++...
T Consensus 592 eai~~i~~~~ 601 (963)
T 2x19_B 592 QALGFLLSAL 601 (963)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcC
Confidence 9999988654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00011 Score=81.23 Aligned_cols=299 Identities=12% Similarity=0.112 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh---C--CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHH
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL---G--SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMP 204 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 204 (528)
...+..|+.+++.++.+-..... ..++.++.++ . .+++.++..++|+++.++..-....+.+. .+++.
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 57889999999999886443221 2233333332 3 24899999999999999832111111111 13455
Q ss_pred HHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCC-hHHHHHHH
Q 009700 205 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGT-NDKIQAVI 281 (528)
Q Consensus 205 Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~-~~~~~~~~ 281 (528)
++..+ + +.++..|++++.++++.....-......++..+..++..+ +...+..++.+++.++... .+.....+
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555 2 6789999999999996532111223345556666777763 5788888888888887542 12222222
Q ss_pred HhCcHHHHH----HHhcCC--ChhhHH---HHHHHHhHhhcCCc-------------chhHHHhccCChHHHHHHhccc-
Q 009700 282 EAGVCPRLV----ELLLHS--STTVLV---PALRTVGNIVTGDD-------------TQTQCVIDNQGLPRLYQLLTQN- 338 (528)
Q Consensus 282 ~~~~l~~L~----~lL~~~--~~~v~~---~al~~L~~l~~~~~-------------~~~~~~~~~~~l~~L~~lL~~~- 338 (528)
.. +++.++ .++... ++..+. .++..|+.+...-. .... .+-..+++.+..++...
T Consensus 627 ~~-ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~ 704 (971)
T 2x1g_F 627 DI-IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMWV 704 (971)
T ss_dssp HH-HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhcc
Confidence 22 333333 333333 222233 34444444432111 1111 12235778787777543
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC-C-HH---HHHHHHHCCC
Q 009700 339 YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG-T-RE---QIQFLVSQGC 413 (528)
Q Consensus 339 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-~-~~---~~~~l~~~~~ 413 (528)
.+..+.+.+|++++.++.........++. .+++.|+..+..... ..+++.++.++..- . +. ....+.. ..
T Consensus 705 ~~~~v~e~~~~~~~~~~~~~~~~~~p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~~ 779 (971)
T 2x1g_F 705 EEIDVLEAACSAMKHAITNLRSSFQPMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-EF 779 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHC--CTHHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-HH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-HH
Confidence 26689999999999986521111111111 133344433333222 23667777665522 2 11 1222221 12
Q ss_pred hHHHHhhcCC-------CChHHHHHHHHHHHHHHHhhhhc
Q 009700 414 IKPLCDLLVC-------PDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 414 l~~L~~ll~~-------~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
+..+..++.. .+|+++......+..++...+..
T Consensus 780 ~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 780 IQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp HHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 3333444443 37788888888889988877654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0018 Score=72.15 Aligned_cols=316 Identities=10% Similarity=0.100 Sum_probs=174.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC--hh-
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDS--PS- 191 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~--~~- 191 (528)
+++.+.+++....++.++..++.++.+...--+ ...+.+...++.+. .++ .+++++..|+.+|..+.... +.
T Consensus 195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcch
Confidence 345555666544447899999999998776322 23355566677666 344 37899999999999998552 21
Q ss_pred --HHHHHHh--cCChHHHHH-----------hh--ccchhhHHHHHHHHHhhhhcCCC------CCCChhhhHHHHHHHH
Q 009700 192 --CRDLVLS--HGALMPLLA-----------QL--NEHSKLSMLRNATWTLSNFCRGK------PPAPFDQVRPALAALQ 248 (528)
Q Consensus 192 --~~~~~~~--~g~i~~Ll~-----------ll--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~ 248 (528)
+...+.. .+.+..+.. .+ ..+.+.+.....+..+..+.... +......+..+++.++
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 1111111 111221111 01 01234555555555554433210 1111223456778888
Q ss_pred HHhcCCCHHHHHHHHHHHHhhcc----C--ChHHHHHHHHhCcHHHHHHHhcCCCh----------------------hh
Q 009700 249 HLIFSSDEEVLTDACWALSYLSD----G--TNDKIQAVIEAGVCPRLVELLLHSST----------------------TV 300 (528)
Q Consensus 249 ~ll~~~d~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v 300 (528)
.+...++.++...++..+..+++ . .......++. .+++.++..+..++. ..
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 87778888888888777766665 1 1112222222 245555555533210 11
Q ss_pred HHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc
Q 009700 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 379 (528)
+..+..+|..++....... +. -+.+.+...+.++ .+...+..++|+++.++.+.......-+-..+++.|..+..
T Consensus 430 ~~~~~~~L~~l~~~~~~~~---l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDT---EE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHH---HH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 3334445555553222211 11 1234444555431 26788999999999998643332111111125555555332
Q ss_pred -----cCChHHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 380 -----HAEFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 380 -----~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.+++.++..++|+++.++..- .++.... +++.++..+.+.++.++..|+.+|.+++.....
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 134556667999999776431 2333222 577788888888899999999999999987543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00065 Score=74.62 Aligned_cols=314 Identities=11% Similarity=0.092 Sum_probs=178.5
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-C--h-
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGD-S--P- 190 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~-~--~- 190 (528)
+++.+..+|..+.++++...++.++.....- -....+++.+.++.++ .+|. +++++..|+.+|..+... . +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 4555556665444478888899999998872 2345677788899999 8885 678999999999999862 2 2
Q ss_pred -hHHHHHHh--cCChHHH-----------HHhh--ccchhhHHHHHHHHHhhhhcCCCC-----CCC-hhhhHHHHHHHH
Q 009700 191 -SCRDLVLS--HGALMPL-----------LAQL--NEHSKLSMLRNATWTLSNFCRGKP-----PAP-FDQVRPALAALQ 248 (528)
Q Consensus 191 -~~~~~~~~--~g~i~~L-----------l~ll--~~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~L~ 248 (528)
.+-+.+.. .+.+..+ -..+ ....+.+.....+..+..+..... .+. ...+..++..|+
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 12211111 0011111 1111 123456777777777765544321 011 122233445666
Q ss_pred HHhcCCCHHHHHHHHHHHHhhccC------ChHHHHHHHHhCcHHHHHHHhcCCCh---------h------------hH
Q 009700 249 HLIFSSDEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLLHSST---------T------------VL 301 (528)
Q Consensus 249 ~ll~~~d~~v~~~a~~~l~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~~~~---------~------------v~ 301 (528)
.+...+|.++...++..-..+++. .......++. .+++.++..+..+.. . ..
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 666677888877766655455431 0111122222 145555555554330 0 00
Q ss_pred HHHH-HHHhHhhcCCc-chhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHH
Q 009700 302 VPAL-RTVGNIVTGDD-TQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYL 377 (528)
Q Consensus 302 ~~al-~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~l 377 (528)
-... .+|..++.-.. .... -+++.+.+.+.++ .+...++.++|+++.++.+..+ .-..++. .++|.|+.+
T Consensus 430 f~~~Rd~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l 503 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDL 503 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHh
Confidence 0011 22333322111 1111 1223344444432 2788999999999999875433 2333332 378888888
Q ss_pred Hcc-----CChHHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 378 LQH-----AEFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 378 l~~-----~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+.. ....++..++|+++.++..- .++..+. ++..|...+..+++.+...|++++.+++..+..
T Consensus 504 ~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 504 CVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 864 33456778889999876532 2333333 566777777778899999999999999987654
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.8e-05 Score=84.16 Aligned_cols=303 Identities=11% Similarity=0.011 Sum_probs=168.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hhhHHHHHhcCCh
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT--SEHTRVVIEHGAV 160 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~g~i 160 (528)
+.++.++..++.++...++- .+...++..++++.+.++|.+ ++++..|+.||+.+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788888999999988763 456677778899999999864 789999999999998843 2333233322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----hHHHH--HHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 161 PKFVQLLG--SASDDVREQAVWALGNVAG------DSP-----SCRDL--VLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 161 ~~L~~lL~--~~~~~i~~~a~~~L~nl~~------~~~-----~~~~~--~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
...+..+. ..+.++.+..+..+..++. ..+ +.+.. -.-.+.++.++.++ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11222222 3566776655555544421 111 11111 01124677777777 455566666665555
Q ss_pred hhhcCCC---CC--CC----hhhhHHHHHHHHHHhcCCC-----H-----------HHHHHHHHHHHhhc-cCChHH-HH
Q 009700 226 SNFCRGK---PP--AP----FDQVRPALAALQHLIFSSD-----E-----------EVLTDACWALSYLS-DGTNDK-IQ 278 (528)
Q Consensus 226 ~~l~~~~---~~--~~----~~~~~~~l~~L~~ll~~~d-----~-----------~v~~~a~~~l~~l~-~~~~~~-~~ 278 (528)
..+.... +. .. ...+..+++.++.-+..++ . +.|.... ++...+ .-.++. ..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 5444221 11 11 1233445555555444211 1 2333333 332222 112211 11
Q ss_pred HHHHhCcHHHHHHHhc---CCChhhHHHHHHHHhHhhcCCcchhHHH-----hccCChHHHHHHhc-----ccCchhHHH
Q 009700 279 AVIEAGVCPRLVELLL---HSSTTVLVPALRTVGNIVTGDDTQTQCV-----IDNQGLPRLYQLLT-----QNYKKSIKK 345 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~~l~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~ 345 (528)
.+.+. +.+.+...+. +.+|..++.++.+++.++.+.......+ .-..+++.+..++. .+ ++.|+.
T Consensus 436 ~~~~~-i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYSA-ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHHH-HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 11111 2222333342 3468889999999999988754322111 00124455666654 44 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc------cCChHHHHHHHHHHHHhcCCCC
Q 009700 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ------HAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 346 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
.++|+++..+.-... +...+|.++..+- +++..++..|++++.+++..+.
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 999999998762211 1234555555544 4567899999999999987654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00012 Score=67.88 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=144.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 287 PRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 287 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
..++.-|.+.+...+..++.-|..+..........++..+++..|+.+.... +...+..++.++.++..+ .....-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchh
Confidence 3455666677788899999999997766777788899999999999999998 999999999999999873 44454455
Q ss_pred -HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH--------HC--CChHHHHhhcC---CCChHHHHHH
Q 009700 367 -EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV--------SQ--GCIKPLCDLLV---CPDPRIVTVC 432 (528)
Q Consensus 367 -~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~--~~l~~L~~ll~---~~~~~~~~~~ 432 (528)
...+|..+..++.+.+..|.+.|+..|..++...+. ....+. +. ..+..|+.+|. +.|.+++..+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 455788888899988899999999999988775421 111111 11 24778889997 7899999999
Q ss_pred HHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC--CHHHHHH
Q 009700 433 LEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD--NNEIYEK 484 (528)
Q Consensus 433 l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~--~~~v~~~ 484 (528)
+..|..++...+.... ...+...+++.|.-..+...+... ++++.+.
T Consensus 278 mtLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999999988764331 234788899888888888876554 6666543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00057 Score=73.48 Aligned_cols=300 Identities=15% Similarity=0.175 Sum_probs=200.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhHHHHH
Q 009700 120 FVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS---PSCRDLV 196 (528)
Q Consensus 120 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~---~~~~~~~ 196 (528)
+++-+...+ ..-...++..+.++..+..... .+..+++..|.+.+...... +.|+.++..||... +..-..+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455433 3334566667777655331111 11125667777777764333 99999999999443 2222233
Q ss_pred HhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChH
Q 009700 197 LSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 197 ~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~ 275 (528)
+ +.++.++..+ .+....++..|-.++..+...-+ ...+..++|.|...+.+. .+.....++.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 4678888887 56667888888888777775532 223478899999988765 689999999999999976665
Q ss_pred HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc-hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH
Q 009700 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT-QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 354 (528)
.....+. .++|.+...+.+..+.+...|..++..+|..-+. .. ..++|.|++.+.++ +. ..++...|+.-
T Consensus 168 ~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 168 QVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred HHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence 5444333 4899999999999999999999999988863221 11 14678888888876 33 33444444432
Q ss_pred hc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC-CHHHHHHHHHCCChHHHHhhcCC-CChHHH
Q 009700 355 TA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG-TREQIQFLVSQGCIKPLCDLLVC-PDPRIV 429 (528)
Q Consensus 355 ~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~ 429 (528)
+- -..... .+ ++|.|.+-|......+++.++.++.|++.-- ++.....++. .+++.+....+. .+|+++
T Consensus 239 tfv~~v~~~~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 239 TFVAEVTPATL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp CCCSCCCHHHH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHH
T ss_pred eeEeeecchhH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHH
Confidence 21 122221 11 5789999999999999999999999998743 4544444332 467777665554 799999
Q ss_pred HHHHHHHHHHHHhhhh
Q 009700 430 TVCLEGLENILKIGEA 445 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~ 445 (528)
+.+-.++..+.+.+..
T Consensus 313 ~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 313 EVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999888876654
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00061 Score=74.69 Aligned_cols=304 Identities=10% Similarity=0.008 Sum_probs=168.3
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhHHHHHHhcCChHH
Q 009700 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS--PSCRDLVLSHGALMP 204 (528)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~ 204 (528)
.+ +.+...++.++.....- -....+++.+.++.+..+|.. ++++..|+.+|..+.... +..+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 78999999999999872 234556667788888888864 899999999999998544 332222222101122
Q ss_pred HHHhhcc-chhhHHHHHHHHHh-------hhhcCCCCC-CC-------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009700 205 LLAQLNE-HSKLSMLRNATWTL-------SNFCRGKPP-AP-------FDQVRPALAALQHLIFSSDEEVLTDACWALSY 268 (528)
Q Consensus 205 Ll~ll~~-~~~~~~~~~a~~~L-------~~l~~~~~~-~~-------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 268 (528)
.+..+.. ..|.++.+..+..+ ..+ ...+. .. .....++++.++.++.++++++...++..+..
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 2222211 34555554443333 233 22221 11 13346788999999999998888777666655
Q ss_pred hccC---------ChHHHHHHHHhCcHHHHHHHhcCCCh----------------hhHHHHHHHHhHhh-cCCcchhHH-
Q 009700 269 LSDG---------TNDKIQAVIEAGVCPRLVELLLHSST----------------TVLVPALRTVGNIV-TGDDTQTQC- 321 (528)
Q Consensus 269 l~~~---------~~~~~~~~~~~~~l~~L~~lL~~~~~----------------~v~~~al~~L~~l~-~~~~~~~~~- 321 (528)
+... -......++.. +++.++.-+..++. ..|.... .+-..+ .-.+...-.
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~-Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASLKEFLKS-LLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHH-HHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhccccccccHHHHHHHHH-HHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence 4421 01122222222 44555555544211 1232222 222222 212211111
Q ss_pred HhccCChHHHHHHhc---ccCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----cCcHHHHHHHHc-----cCChHHHHH
Q 009700 322 VIDNQGLPRLYQLLT---QNYKKSIKKEACWTISNITAGSRSQIQAVI-E----ANIIAPLVYLLQ-----HAEFEVKKE 388 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~ 388 (528)
+.+ -+.+.+.+.+. +. +...++.++.+++.++.+......... . ..+++.+..++. ..++.|+..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 110 11122223332 23 567889999999999875332111000 0 113455556655 568999999
Q ss_pred HHHHHHHhcCCCC--HHHHHHHHHCCChHHHHh--hcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 389 ASWAISNATSGGT--REQIQFLVSQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 389 a~~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~--ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
++++++..+..-. ++.... ++..++. .+.++++.++..+..++.++++....
T Consensus 515 ~~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 515 YMEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 9999999876531 222221 3445555 55567788999999999999987764
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0062 Score=66.83 Aligned_cols=315 Identities=11% Similarity=0.132 Sum_probs=170.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-ChhHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF-VQLLGSASDDVREQAVWALGNVAGD-SPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~ 193 (528)
+++.+..+|....++++...++.+|..+.+= -....+++.+.++.+ ..+| ++++++..|+.+|..+... .+.+.
T Consensus 207 Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW--I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~ 282 (1073)
T 3gjx_A 207 IFQLCQFVMENSQNAPLVHATLETLLRFLNW--IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYE 282 (1073)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHh--cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchH
Confidence 3444445554444478888888999988872 234567778888887 4666 4678999999999999854 33332
Q ss_pred HHHHh--cCChHHHHHhh------------ccchhhHHHHHHHHHhhhhcCCCC-----C-CChhhhHHHHHHHHHHhcC
Q 009700 194 DLVLS--HGALMPLLAQL------------NEHSKLSMLRNATWTLSNFCRGKP-----P-APFDQVRPALAALQHLIFS 253 (528)
Q Consensus 194 ~~~~~--~g~i~~Ll~ll------------~~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~L~~ll~~ 253 (528)
+.+.. .+.+..+-.++ ....+.+.....+.++..+..... . ........++..++.+...
T Consensus 283 ~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~ 362 (1073)
T 3gjx_A 283 EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV 362 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC
Confidence 33211 01111111111 122345666667777665544320 0 1122234455556677677
Q ss_pred CCHHHHHHHHHHHHhhccC----C------------------hHHHHHHHHhCcHHH----HHHHhcCCCh---------
Q 009700 254 SDEEVLTDACWALSYLSDG----T------------------NDKIQAVIEAGVCPR----LVELLLHSST--------- 298 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~----~------------------~~~~~~~~~~~~l~~----L~~lL~~~~~--------- 298 (528)
+|.++...++..-..+... . +.. ..+.. +++.. ++.-+..+.+
T Consensus 363 ~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~-~i~~~L~~vlI~~m~~P~ev~i~e~e~g 440 (1073)
T 3gjx_A 363 EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYL-TVLSKVRLLMVSRMAKPEEVLVVENDQG 440 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTH-HHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHH-HHHHHHHHHHHHhcCCCccccccCcccc
Confidence 8888877765544333221 0 011 11111 12333 3333333221
Q ss_pred -hh-----------HHHHH-HHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCH-HHHH
Q 009700 299 -TV-----------LVPAL-RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSR-SQIQ 363 (528)
Q Consensus 299 -~v-----------~~~al-~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~-~~~~ 363 (528)
.+ ...++ .++..++.-....+..+ +++.+.+.+..+ .+......+||+++.++..-. +.-.
T Consensus 441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~ 516 (1073)
T 3gjx_A 441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 516 (1073)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCccccc
Confidence 00 00111 12233322111111111 233344444432 257789999999999975322 2121
Q ss_pred HHHHcCcHHHHHHHHccC-----ChHHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH
Q 009700 364 AVIEANIIAPLVYLLQHA-----EFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l 436 (528)
.++ ..+++.|+.+.... ...++...+|+++.....- .++..+. ++..|+..+...++.++..|+.++
T Consensus 517 ~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af 590 (1073)
T 3gjx_A 517 RFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTF 590 (1073)
T ss_dssp HHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred chH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222 13777787777654 2346666778888875532 2333333 567788888888999999999999
Q ss_pred HHHHHhhhhc
Q 009700 437 ENILKIGEAD 446 (528)
Q Consensus 437 ~~i~~~~~~~ 446 (528)
..++..+...
T Consensus 591 ~~i~~~C~~~ 600 (1073)
T 3gjx_A 591 IKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00046 Score=67.72 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=167.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
-...|+..|.++..++|.-|+..||.++...+.. .|.. ...+ . ..|+++++-++-+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR----- 231 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK----- 231 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC-----
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc-----
Confidence 4567888889999999999999999999874211 1111 1222 2 45556666655521
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+-.+.++ --..||+.|+.+|+.+ ..-+.- ..++..++..+ ..+..+++..++-.|.++ .+
T Consensus 232 ----------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~D 292 (800)
T 3oc3_A 232 ----------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KE 292 (800)
T ss_dssp ----------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GG
T ss_pred ----------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HH
Confidence 1111222 1246899999999998 554432 33455555544 566788999999999988 11
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC--hhhHHHHHHHHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS--TTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~ 309 (528)
--. ...++++.++..|.+.|++|+..|+.+|.-++ . ++.... ++..+...|.+-+ ..-....+..|+
T Consensus 293 LL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLA 361 (800)
T 3oc3_A 293 FVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLT 361 (800)
T ss_dssp GCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 111 16788999999999999999999999999998 2 223332 5667777776532 123444566777
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.++..... ...+...+|.|.++|.++ -+.||..++.++..+. .....+.+ +..+|-..+.+++..+
T Consensus 362 kL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS 427 (800)
T 3oc3_A 362 KIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMA 427 (800)
T ss_dssp HHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHH
T ss_pred HHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHH
Confidence 77765532 122347899999999999 9999999999998876 22222222 2245566778888777
Q ss_pred HHHHH
Q 009700 390 SWAIS 394 (528)
Q Consensus 390 ~~aL~ 394 (528)
..+..
T Consensus 428 ~~VWk 432 (800)
T 3oc3_A 428 IKLLK 432 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0053 Score=67.37 Aligned_cols=296 Identities=13% Similarity=0.124 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHH-HHhhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHh--cC
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF-VEFLDRHDLPQLQFEAAWALTNIASGT-SEHTRVVIE--HG 158 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L-v~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~--~g 158 (528)
+.++.+...++.++..+++= -+...+++.++++.| ..+|. + ++++..|+.||+.+.+.. ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677777788888888763 356778889999988 46663 4 789999999999998742 222222211 11
Q ss_pred ChHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCChhHHHHHHhc-C-------ChHHHHHhhccchhhHH
Q 009700 159 AVPKFVQLLG-------------SASDDVREQAVWALGNVAGDSPSCRDLVLSH-G-------ALMPLLAQLNEHSKLSM 217 (528)
Q Consensus 159 ~i~~L~~lL~-------------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-g-------~i~~Ll~ll~~~~~~~~ 217 (528)
.+..+..++. ..+.+.....+.++..+... ....+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 2222222221 12234445555555554322 12222211 1 223333333 4557777
Q ss_pred HHHHHHHhhhhcC----CCC-----C------------CChhhhHHHHHH----HHHHhcCCC-----------------
Q 009700 218 LRNATWTLSNFCR----GKP-----P------------APFDQVRPALAA----LQHLIFSSD----------------- 255 (528)
Q Consensus 218 ~~~a~~~L~~l~~----~~~-----~------------~~~~~~~~~l~~----L~~ll~~~d----------------- 255 (528)
...+...-..|.. ..+ . .......+++.. ++.-+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 7766554333322 111 0 011122334433 333333221
Q ss_pred ---H-----HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhH-HHhc
Q 009700 256 ---E-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQ-CVID 324 (528)
Q Consensus 256 ---~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~-~~~~ 324 (528)
. .+..+++..+.++.. .+.... +.+.+.+.+.. .+|.....+++++|.++..-....+ .++
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L- 519 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL- 519 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-
T ss_pred hhcchHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-
Confidence 0 122223322222221 111111 33444444443 4588899999999999854332111 121
Q ss_pred cCChHHHHHHhcccC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 325 NQGLPRLYQLLTQNY----KKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
..+++.|+.+..+.. ...++...+|++|..+. ..++... .++..|++.+...++.|+..|+.|+..++
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 145666666665431 23456667799998764 2333222 25667788888889999999999999998
Q ss_pred CCCC
Q 009700 398 SGGT 401 (528)
Q Consensus 398 ~~~~ 401 (528)
..+.
T Consensus 595 ~~C~ 598 (1073)
T 3gjx_A 595 QKCR 598 (1073)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 7653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.001 Score=61.67 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=126.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchh-HHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPI-EEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
..+| +-+.|.|.+...|..|+..+.+++........ .... -....+.+...+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 56788999999999999999998875321111 1111 1234566777887777 8999999999998876211
Q ss_pred -----hhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 149 -----EHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 149 -----~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
.......-..++|.|+. .|.+....++..+..++..++...... .. +++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111112346777775 578888999999998888776332211 11 234555566 677888888888
Q ss_pred HHhhhhcCCC--CCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 223 WTLSNFCRGK--PPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 223 ~~L~~l~~~~--~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
..|..+.... ... ....+..+++.+..++.+.|+.|+..|..++..+-..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8877766542 111 1233456777888999999999999999998877554
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.059 Score=49.61 Aligned_cols=293 Identities=15% Similarity=0.136 Sum_probs=175.3
Q ss_pred HHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHH
Q 009700 183 GNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTD 261 (528)
Q Consensus 183 ~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~ 261 (528)
.|+.-+....-+-++..+++..+...+ +.++.++.+..+..|...+..+ ..........+|.++..+. ++++++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence 344455555667778888888888888 7888899999999998888664 2223345678898888776 678999999
Q ss_pred HHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-------Ch-------hhHHHHHHHHhHhhcC-----C-------
Q 009700 262 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-------ST-------TVLVPALRTVGNIVTG-----D------- 315 (528)
Q Consensus 262 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~-------~v~~~al~~L~~l~~~-----~------- 315 (528)
....++|+..+.....+..+..+.+..|...+... +. .+...+++++.|.... +
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999999888888888889999988876441 22 2344556666655321 0
Q ss_pred ---cchhHHHhccCChHHHHHHhcccC-c----hhHHHHHHHHHHHHhcCC---HHH----HHHHHHcCcHHHHHHHHc-
Q 009700 316 ---DTQTQCVIDNQGLPRLYQLLTQNY-K----KSIKKEACWTISNITAGS---RSQ----IQAVIEANIIAPLVYLLQ- 379 (528)
Q Consensus 316 ---~~~~~~~~~~~~l~~L~~lL~~~~-~----~~v~~~a~~~L~nl~~~~---~~~----~~~l~~~~~i~~L~~ll~- 379 (528)
..+...+++..++..|+..|+-.. + .++|...+...--+.... .+. ++.+-+.+.+..++-.+.
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW 504 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW 504 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence 112334555567777777776431 1 234444444333332210 000 011111233333332221
Q ss_pred ---c-CC-------hHHHHHHHHHHHHhcCCC-CHHHH-HHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHHhhh
Q 009700 380 ---H-AE-------FEVKKEASWAISNATSGG-TREQI-QFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 380 ---~-~~-------~~v~~~a~~aL~nl~~~~-~~~~~-~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~~~~ 444 (528)
. .+ ..+.+.+...|..+...+ ..++. .++ -.+..=..+|++. .|..+..++..-.++++.++
T Consensus 505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 1 11 122234444444444332 32221 111 1233344566653 57777778888888888776
Q ss_pred hchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 445 ADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
-... . ..---..++-+.+|+|+++...|..++.+|-
T Consensus 582 ~~Ad-----------~--W~i~r~tle~l~NHsNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 582 TRAD-----------I--WTIDRPMLEGLTNHRNSDIAKAANSLLSRFP 617 (619)
T ss_dssp THHH-----------H--SCCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred chhc-----------c--ceechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence 4221 1 1112356788899999999999999998763
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00092 Score=60.54 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=117.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHH----hcCCChhhHHHHHHHHhHhhcCC----cch
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL----LLHSSTTVLVPALRTVGNIVTGD----DTQ 318 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l----L~~~~~~v~~~al~~L~~l~~~~----~~~ 318 (528)
+...+.+.|..-...++..|.......++.... .++.++.. +.+.+..+...++.+|..+...- ...
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344555566666666666666544433322211 23333333 34678888888888888775321 111
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
... --.-++|.|+.-+.++ ...+|..+-.++..++.-.+ ...+++.++.-+.+.+.++|.+++..+..+..
T Consensus 126 ~~~-ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 126 SQE-EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CHH-HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111 0124688898888887 88899888887776653111 12367778888999999999999999998875
Q ss_pred CCCHHHHHHHHHCCCh---HHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 399 GGTREQIQFLVSQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 399 ~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
..... ....+ +.+..++.+.|..++..|+.++..+.....
T Consensus 197 ~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 197 NAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22111 23468 999999999999999999999988877653
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0059 Score=56.46 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=144.7
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS----CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.+...+.+..|+..|..-+-+.|..+..++.++...... ..+.+.. -...+..++....++++.-.+...|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 445567888899999888899999999999999865432 2333333 2333334443344666667777777777
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcCCChhhHHHHH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al 305 (528)
.++..........+.+-.+...++.++=++..+|..++..+..........++.. .++.....+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7664322223334445566677788889999999999998877665555555544 3677788899999999999999
Q ss_pred HHHhHhhcCCc---chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 306 RTVGNIVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 306 ~~L~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..||.+..... -...++-+..-+..++.+|.+. +..++-+|..+.--+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 99999986433 2344555667789999999999 99999999999888776
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0068 Score=56.07 Aligned_cols=188 Identities=10% Similarity=0.089 Sum_probs=126.3
Q ss_pred HHHHhcCCChhhHHHHHHHHhHhhcCCcchh--HHHh--ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC------
Q 009700 289 LVELLLHSSTTVLVPALRTVGNIVTGDDTQT--QCVI--DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS------ 358 (528)
Q Consensus 289 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------ 358 (528)
|-.-|.+.+|..|..|+..+..+........ .... -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 6678899999999999999988876543211 1111 123456677788887 9999999999999887521
Q ss_pred HHHHHHHHHcCcHHHHHHH-HccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHH
Q 009700 359 RSQIQAVIEANIIAPLVYL-LQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437 (528)
Q Consensus 359 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~ 437 (528)
....... -..++|.|+.- +.+....++..|..++..++....+. . .+++.+...+.+.+|.++..++..|.
T Consensus 93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1112122 23467777764 67788899999988887776533211 1 13567778889999999999999999
Q ss_pred HHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 438 NILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 438 ~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.++........ ...+.... .+..+..+.++.|++|+..|..++-.+|-
T Consensus 165 ~~l~~fg~~~~----~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNV----NVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTC----CHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcC----CchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 98875432110 01111221 23556777899999999999999877665
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.034 Score=51.48 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=152.9
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh------HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV------RPALAALQHLIFSSDEEVLTDACWALSY 268 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 268 (528)
.+...+.+..|+..| ..-+-+.+..++.++.++.+.........+ ..++..|+..-.++ ++.-.+-..|..
T Consensus 73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~--diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc--hhHhHHHHHHHH
Confidence 345556778888888 667788999999999999988743332221 34445555544433 333333333443
Q ss_pred hccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc---CChHHHHHHhcccCchhHHH
Q 009700 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN---QGLPRLYQLLTQNYKKSIKK 345 (528)
Q Consensus 269 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~ 345 (528)
.. ..+.....++..+.+..+...+..++-.+...|..++..+.+.........+.. .++..+..+|.++ +.-.|+
T Consensus 150 ci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR 227 (341)
T 1upk_A 150 CI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 227 (341)
T ss_dssp HH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HH-HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence 33 345566667777888899999999999999999999999887665544344432 3567788889998 999999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC--CHHHHHHHHHC--CChHHHH
Q 009700 346 EACWTISNITAG--SRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGG--TREQIQFLVSQ--GCIKPLC 418 (528)
Q Consensus 346 ~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~--~~l~~L~ 418 (528)
.++..|+.+... +.......+ +..-+..++.+|.+....++-+|..++.-++.+. +++....+..+ .++..|-
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~ 307 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 307 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999863 444443444 4456888999999999999999999998887753 34444444432 3444444
Q ss_pred hhcC
Q 009700 419 DLLV 422 (528)
Q Consensus 419 ~ll~ 422 (528)
+...
T Consensus 308 ~f~~ 311 (341)
T 1upk_A 308 KFQN 311 (341)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 4444
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0059 Score=55.29 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=116.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhc----CCCCC
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFC----RGKPP 234 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~----~~~~~ 234 (528)
.+...|-+.+..-+..++..|.......+. .+.. .+..+++.+. .+.+..+...++.+|..+. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455555666666666666665433332 2111 2333333221 2456667777776666553 32222
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
........++|.|+.-+.++.+.++..+-.++..++...+ ...+++.++..+.+.++..+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 2223346789999999988888998888777766653211 113678888899999999999999999999754
Q ss_pred CcchhHHHhccCCh---HHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 315 DDTQTQCVIDNQGL---PRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 315 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3322 13467 8999999998 99999999999987754
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.016 Score=51.17 Aligned_cols=139 Identities=10% Similarity=0.128 Sum_probs=103.8
Q ss_pred HHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHH
Q 009700 302 VPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVY 376 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ 376 (528)
..|+..+-.++++.+ ....++++.+.-.|..+|+... -..+|-.++.+++.+.. ++++.+..+++.+++|..++
T Consensus 74 cnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 445666666676444 4557889999889999997652 14688889999999886 78899999999999999999
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--------CChHHHH-hhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 377 LLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 377 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~~L~-~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
.++.++.-.|.-|...+..+.. +.....|+... .++..++ .+.+.+++.+.+.++.+..++.+..
T Consensus 153 ime~GselSKtvAtfIlqKIL~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHhhccHHHHHHHHHHHHHHhc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999887 34555544321 1232222 3446688889888888888777543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.13 Score=49.85 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH 249 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 249 (528)
+++..+..|+..|.....+-|..++. ++..++.++ .+.+..++..+...|..+|.+ ..+..+..+|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 56899999999999999999987776 678899999 888999999999999999987 336788999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 250 LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 250 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+|+++++.-...+-++|..+...++.. .+..+...+...++.+|+.++..|..-.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999998877777777777776655422 3344444444467889999888886544
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.073 Score=49.03 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=121.0
Q ss_pred HhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHH
Q 009700 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKE 346 (528)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 346 (528)
.++.-++.+.++-++..+++..+...+..++..+....+..|-..+....-.. .-+ ...++.++..+.-..+.++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccc-cccchHHHHHhccCCCcceEEe
Confidence 34444566688889999999999999999999999999998887765332111 111 2568888888864448899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-------ChHHHHHHHHHHHHhcC-------------CC------
Q 009700 347 ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-------EFEVKKEASWAISNATS-------------GG------ 400 (528)
Q Consensus 347 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~-------------~~------ 400 (528)
....|+|..++.....+..+..|.++.|...+... +..-++.||..++|... +|
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999999888888888999999999887543 34455666666655421 11
Q ss_pred C--HHHHHHHHHCCChHHHHhhcCCCC---h---HHHHHHHHHHHHHH
Q 009700 401 T--REQIQFLVSQGCIKPLCDLLVCPD---P---RIVTVCLEGLENIL 440 (528)
Q Consensus 401 ~--~~~~~~l~~~~~l~~L~~ll~~~~---~---~~~~~~l~~l~~i~ 440 (528)
. ..+...+++.++++.|+.+|+.+. + +++..++..+.-++
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 1 234445566678889998887543 2 34555555554444
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0074 Score=59.42 Aligned_cols=245 Identities=13% Similarity=0.086 Sum_probs=154.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc------------cchhhHHHHHHHHHhh
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN------------EHSKLSMLRNATWTLS 226 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~------------~~~~~~~~~~a~~~L~ 226 (528)
....|+.-|-++..++|.-|+.+|..+..............+. ...++++. +..--.+++.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4566776677889999999999999987322110000001111 22222221 1112468999999999
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~ 306 (528)
.+ ..-|.. ..++..|+..+....++++..++-.|.++.+--. . . .++++.++..|.+.+++|+..|+.
T Consensus 254 aL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-L-d~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 254 RI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-K-DGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-H-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-H-HHHHHHHHhhcCCcccHHHHHHHH
Confidence 99 554443 2344455555677889999999999999922211 1 2 247888999999999999999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
+|..++ .+.... .++..+...|.+-.+ ..-.......|+.++...+. ...+...+|.|...+.+.-+.|
T Consensus 322 tLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 322 LLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred Hhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 999999 222222 234466666654312 22234445566666653321 0112368999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHH
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~ 437 (528)
|..++.+|..+.. ...... .+.++|-.++++++..++++..
T Consensus 392 R~AVL~TL~tfL~---~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLSE---ESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCCC---HHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---hhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999988872 232222 2234555678888777766553
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0029 Score=56.90 Aligned_cols=140 Identities=15% Similarity=0.062 Sum_probs=78.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhH
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 241 (528)
.|..++.++++.+|..++..+ . ...+..++ ++++..++..+...+ .
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~------------ 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P------------ 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C------------
Confidence 455556666666666655532 0 11233333 566666666666521 0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHH
Q 009700 242 PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQC 321 (528)
Q Consensus 242 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~ 321 (528)
.+.+..+++++++.|+..++..+ . .+.+..++.++++.|+..++..+
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l------------- 194 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL------------- 194 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence 01233455566677776665541 0 12333566777777777776542
Q ss_pred HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 322 VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
..+.|..++.++ +..||..++..++ .+.|..+ .++++.|+..|...|
T Consensus 195 -----~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 123566667777 7888887776643 2444444 777888888776544
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.073 Score=46.66 Aligned_cols=145 Identities=17% Similarity=0.042 Sum_probs=107.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAG-DSPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~-~~~~~~ 193 (528)
.++....+.+++. .++|..|+..|+.. .... .+++.+.. +-..++-.|++.++.+++.++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3566666777776 79999999988887 3111 24566666 5556889999999999999984 4443
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
..++.+.... .+++..+++.++..+.-.+.. + ........++|.|-.+..+++.-|+..+.|.|..++...
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1456667777 888999999999887665543 2 122334667888888888889999999999999999998
Q ss_pred hHHHHHHHH
Q 009700 274 NDKIQAVIE 282 (528)
Q Consensus 274 ~~~~~~~~~ 282 (528)
++.+..+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877666555
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.63 Score=45.28 Aligned_cols=289 Identities=12% Similarity=0.053 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
+..+..|+..+.......|+..+. ++..++.+..+.+..||.+|+..|..+|.+ . .... +...|.++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence 789999999999999888877655 568899999999999999999999999987 3 2222 467788888
Q ss_pred ccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHH
Q 009700 210 NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPR 288 (528)
Q Consensus 210 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~ 288 (528)
...+..-...+-++|..+...+| .+.+..+...+.++++.+++.++..|..-... ..+....-.+.-++..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 55555555666666666665433 34555555555557888888887777432211 1111111112224555
Q ss_pred HHHHhcCCChhhHHHHHHHHhHhhcCCc-chhHHHhccCChHHHHHHhc------ccCchhHHHHHHHHHHHHh----c-
Q 009700 289 LVELLLHSSTTVLVPALRTVGNIVTGDD-TQTQCVIDNQGLPRLYQLLT------QNYKKSIKKEACWTISNIT----A- 356 (528)
Q Consensus 289 L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~----~- 356 (528)
+.+.|.+-...-....+.+|+.+-.... ...+. +++.+..... .. ++........++..-. .
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~ 255 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN 255 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence 6666655443333334444444432221 11111 2223333321 12 3333333333332221 1
Q ss_pred -CCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCC-HHHHHHHHHCCChHHHHhhcCCCC--------
Q 009700 357 -GSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGT-REQIQFLVSQGCIKPLCDLLVCPD-------- 425 (528)
Q Consensus 357 -~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~-------- 425 (528)
.+.....++.+. ++|.+-.+-... ..+.|...+.++..++..++ .+....++. -++..|..++-...
T Consensus 256 v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~~~~ 333 (507)
T 3u0r_A 256 VHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAENGEN 333 (507)
T ss_dssp BCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC--------
T ss_pred CChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCccccccccc
Confidence 456666666654 778554332221 23478888888888887665 222221111 02333333332111
Q ss_pred -----h----HHHHHHHHHHHHHHHhhhhc
Q 009700 426 -----P----RIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 426 -----~----~~~~~~l~~l~~i~~~~~~~ 446 (528)
+ .-++..+-++..+....+..
T Consensus 334 ~~~~~p~l~fS~vECLLy~fH~L~~k~P~~ 363 (507)
T 3u0r_A 334 AGNEEPKLQFSYVECLLYSFHQLGRKLPDF 363 (507)
T ss_dssp ------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred ccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence 1 24577777788877766543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.002 Score=57.99 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=96.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
+.|..++.+++ +.++..++..+ . .+.|..++.+++..+|..++.. +.
T Consensus 101 ~~L~~ll~D~d-~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 101 EQLSALMFDED-REVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp GGGGGTTTCSC-HHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHcCCC-HHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 34566777777 88888877642 1 1345566788999999988873 11
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKI 277 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~ 277 (528)
.+ ++..+.++++..++..+...+. -+.+..++.++++.|+..+...+
T Consensus 148 ----~~-~l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l----------- 194 (244)
T 1lrv_A 148 ----PG-RLFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL----------- 194 (244)
T ss_dssp ----GG-GGGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred ----HH-HHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence 12 2333448889999998887521 13444677888999999887653
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
..+.|..++.++++.|+..+...++ .+.|..+ .++ +..||..+...|
T Consensus 195 -------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -------RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp -------CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred -------CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 1245777889999999999988764 2345445 666 889998876544
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=1.3 Score=49.85 Aligned_cols=299 Identities=9% Similarity=0.075 Sum_probs=165.6
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhc-CCCChHHHHHHHHHHHHHhcC---
Q 009700 73 SIPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLD-RHDLPQLQFEAAWALTNIASG--- 146 (528)
Q Consensus 73 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~--- 146 (528)
.+..+++.+.++ +...+.+|-..|.++-.. ++ ..+.+...|. .+.++.++..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345555555554 667788888888776433 11 2333444333 333489999999999987642
Q ss_pred --ChhhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHH
Q 009700 147 --TSEHTRVVIEHGAVPKFVQLLGS---ASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRN 220 (528)
Q Consensus 147 --~~~~~~~i~~~g~i~~L~~lL~~---~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~ 220 (528)
+++.+..+. ..++..+...-.. ....++...+.++..|+... |... .+.++.++.++.. +......
T Consensus 81 ~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 81 GMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp GSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT--CHHHHHH
T ss_pred cCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC--CHHHHHH
Confidence 334443333 3344444433211 45889999999999987331 2110 1356667777633 3345666
Q ss_pred HHHHhhhhcCCC---CCCChh-------h----hHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHH
Q 009700 221 ATWTLSNFCRGK---PPAPFD-------Q----VRPALAALQHLIFS-------------------SDEEVLTDACWALS 267 (528)
Q Consensus 221 a~~~L~~l~~~~---~~~~~~-------~----~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~ 267 (528)
++.+|..++.+- ...... . ...+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 777777776541 111000 0 12344444444432 12346667777776
Q ss_pred hhccCChHHHHHHHHhC--cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc--chhHHHhc---cCChHHHHHHhc----
Q 009700 268 YLSDGTNDKIQAVIEAG--VCPRLVELLLHSSTTVLVPALRTVGNIVTGDD--TQTQCVID---NQGLPRLYQLLT---- 336 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~---~~~l~~L~~lL~---- 336 (528)
+...--+ ...+.+.. +++.+..++. ++.++..|+.||..++.... .....++. ...+..++..+.
T Consensus 233 ~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 6554322 12233332 6677776655 46789999999999997542 21111222 111234444432
Q ss_pred ---ccCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 337 ---QNYKKSIKKEACWTISNITAGSRSQIQAVIE-----------ANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 337 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+..+..+.+..+.++..+.. . ...++. .++++.++.+..+++..+-..++.....+..
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 11145677777777777752 1 222221 2467888888888887777777765555544
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.076 Score=47.37 Aligned_cols=139 Identities=13% Similarity=0.094 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC----HH-HHHHH-----
Q 009700 340 KKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT----RE-QIQFL----- 408 (528)
Q Consensus 340 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~----~~-~~~~l----- 408 (528)
+.....+++.+|..++. +......++ ..+.+..+...+.++++.++..|+..|..++.... .+ ....+
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 34567788888888864 566677777 46678999999999999999999888877665432 11 11111
Q ss_pred -HHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHH
Q 009700 409 -VSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 409 -~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
-+..-...+++.+.. .+.+....++..+..++...+.... -..+...|..+|..+.++.|...+++++...
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 223456678888874 5667777777777777766543321 2335677789999999999999999887655
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.069 Score=47.22 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhc-CChhhHHHHHhcCChHH
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~ 162 (528)
-...|+..|..+++. ++....++++.+--.|..+|...+ ..-++..++.+++.+.. ++++....+.+.+++|.
T Consensus 72 RVcnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 345666677777775 677888888887777777776544 23588999999999887 56777888889999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHh-------cCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLS-------HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.++.++.+++-.+..|..++..|..+.......+.. ..++..++..+.++++..+.++++++-..|+.+
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987665433222111 113444444444667778888888888888866
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.43 Score=42.44 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=92.0
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----C------CChHHHHHHHHHHHHHhc
Q 009700 77 MVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----H------DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 77 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~ 145 (528)
+++.|++.. +......+..|+.-+...+..=++.+ ..+++..|+.+|.. . .+.+.+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 344444432 22223445566655554311224455 45667777776652 1 125788999999999987
Q ss_pred CChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hH-HHHHH----------hcCChHHHHHhhccc
Q 009700 146 GTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SC-RDLVL----------SHGALMPLLAQLNEH 212 (528)
Q Consensus 146 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~Ll~ll~~~ 212 (528)
+....+.+.. .+.+..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 5666666665 4678889999999999999999999999885443 11 22221 222345566666434
Q ss_pred hhhHHHHHHHHHhhhhcCCC
Q 009700 213 SKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+.+.+..++..+-.+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 44555555555555555443
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.22 Score=43.71 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=100.7
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhcc-CChHHHHHHH
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH-LIFSSDEEVLTDACWALSYLSD-GTNDKIQAVI 281 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~ 281 (528)
.+...|..++..+++..|+.+|..+ . .....++.+.. +.......|++.+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4444444666678999999988877 2 12567888877 5556778999999999988874 3332
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHH
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ 361 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 361 (528)
..++.+.....+++..+|..|...+...+....... -..-+++.|-.+..++ +.-||+...|.|..++..+|+.
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~---dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE---NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT---CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc---CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 156788899999999999998877654443211100 0012355555555666 8899999999999999999998
Q ss_pred HHHHHH
Q 009700 362 IQAVIE 367 (528)
Q Consensus 362 ~~~l~~ 367 (528)
+..+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.14 Score=49.36 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=106.7
Q ss_pred cCChHHHHHHhcc----------cCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 325 NQGLPRLYQLLTQ----------NYKKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 325 ~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
.+++..|+.+|.. ..+......++.+|..+.- +......++ ....+..|...+.+..+.++..|+..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455666666631 1134677888888888864 566677777 466799999999999999999999999
Q ss_pred HHhcCCCC----H-HHHH------HHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh
Q 009700 394 SNATSGGT----R-EQIQ------FLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI 461 (528)
Q Consensus 394 ~nl~~~~~----~-~~~~------~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l 461 (528)
..++.... . .... ...+..-...++..|.. .+.+....++..+..++...+.... -..+...+
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef 261 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSEL 261 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----HHHHHHHH
Confidence 87776432 1 1111 11233557788888886 5777777777777777766543321 23356778
Q ss_pred hhcccHHHHHHHhcCCCHHHHHH
Q 009700 462 DECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 462 ~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
..+|..+.+..|...+++++...
T Consensus 262 ~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 262 MRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHCChHHHHHHHhcCCChhHHHH
Confidence 89999999999998888887543
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.81 Score=43.97 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=103.3
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----------CCChHHHHHHHHHHHHHh
Q 009700 76 SMVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----------HDLPQLQFEAAWALTNIA 144 (528)
Q Consensus 76 ~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~ 144 (528)
.++..|+++. .......+..|+.-+...+..=++.++ .+++..|+.+|.. ..+...+..++.||..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4555666543 223345677777766654222246666 5668888888752 112578999999999998
Q ss_pred cCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hH-HHHH----------HhcCChHHHHHhhcc
Q 009700 145 SGTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SC-RDLV----------LSHGALMPLLAQLNE 211 (528)
Q Consensus 145 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~----------~~~g~i~~Ll~ll~~ 211 (528)
. +......++. ...+..|...|.+.++.++..++..|+.+|.... .. ...+ .+..-+.+++..+..
T Consensus 149 N-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 149 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp S-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred c-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 7 5566666665 4688999999999999999999999999996542 21 2222 223346777887754
Q ss_pred chhhHHHHHHHHHhhhhcCCCCC
Q 009700 212 HSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 212 ~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..+.+....++..+-.+....+.
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHHHHHHHHcCCCC
Confidence 45666666666666666655443
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=1.2 Score=41.26 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=99.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG----AVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g----~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
+..+..+++.+. +.+.-++.++.-.+. ++.....+.+.+ ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 455555554443 445555555555554 454444444322 22233444443 456678999999999976654
Q ss_pred HHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 009700 192 CRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIF-SSDEEVLTDACWAL 266 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l 266 (528)
.++.+.. ....++..+. .+.+..++..+..++.|++... ..........++..+..++. ..|.+....++-+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5666554 2233333331 4456788888888888887643 11122233445555666665 35889999999999
Q ss_pred HhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+++...+.+..+.....++-..+-.....
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998765444333333444444444443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=1.3 Score=48.91 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhhh----hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHH
Q 009700 214 KLSMLRNATWTLSN----FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 289 (528)
Q Consensus 214 ~~~~~~~a~~~L~~----l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 289 (528)
++.++..++.+++. .|...+......+..+...+...+...+.+-...++.+|+|+..- ..++.|
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 34455555555544 454444434444667777777888888888889999999998742 245666
Q ss_pred HHHhcC-------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHH
Q 009700 290 VELLLH-------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQ 361 (528)
Q Consensus 290 ~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~ 361 (528)
..++.. ....++..|+++|..++...+... -+.+++++.+. .++++|..|+..|.... -+..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~- 546 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA- 546 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH-
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH-
Confidence 666632 234577889999999987554433 23567777432 28899999999886542 2222
Q ss_pred HHHHHHcCcHHHHHHHHcc-CChHHHHHHHHHHHHhcCCCCH
Q 009700 362 IQAVIEANIIAPLVYLLQH-AEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 362 ~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
.+..+...+.. .+..|...+...|.+++....+
T Consensus 547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 23344445554 5788888888899998887655
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=1.2 Score=49.34 Aligned_cols=135 Identities=14% Similarity=0.181 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHhhcc----CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 242 PALAALQHLIFS----SDEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 242 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
..+..+..++.+ .++.++..++-+++.++. .........+. .+...+.+.+...+..-+..++++|||+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 345555566654 356677777777766643 21100000011 133445555666777778889999999986
Q ss_pred CCcchhHHHhccCChHHHHHHhcc------cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc--cCChHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQ------NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ--HAEFEV 385 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v 385 (528)
. ..++.|.+++.. +....++..|+|+|.+++...+..++ +.|+.++. ..++++
T Consensus 470 p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 470 P-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp G-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHH
T ss_pred h-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHH
Confidence 2 234455666532 11357889999999999876665543 44566663 457899
Q ss_pred HHHHHHHHHHh
Q 009700 386 KKEASWAISNA 396 (528)
Q Consensus 386 ~~~a~~aL~nl 396 (528)
|..|+..|...
T Consensus 531 RiaA~~~Lm~t 541 (1056)
T 1lsh_A 531 RIRSCIVFFES 541 (1056)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999888653
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=94.26 E-value=0.73 Score=44.38 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-----HHHH------
Q 009700 340 KKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-----QIQF------ 407 (528)
Q Consensus 340 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~------ 407 (528)
+.....+++.+|..++. +......++ ..+.+..+...+.+..+.++..++..|..++....++ ....
T Consensus 71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 34667788888888864 556666666 4567899999999999999999988777666543211 1111
Q ss_pred HHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHH
Q 009700 408 LVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 408 l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
..+..-+..+++.+. ..+.+....++..+..++...+.... -..+...|..+|..+.+..|....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 122345667888776 45667777777777777766554322 2346778889999999999999999887554
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.20 E-value=1.5 Score=49.22 Aligned_cols=287 Identities=11% Similarity=0.068 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhHHHHHHhcCCh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGD-----SPSCRDLVLSHGAL 202 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i 202 (528)
.+.+.+|-..|..+-. ++ .+...+...| .+.+..+|..|+..|-+.... +++.+..+ ...++
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll 95 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVM 95 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHH
Confidence 6788888888877654 22 1334444433 346789999999999987632 23333332 22223
Q ss_pred HHHHHhhcc--chhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-------
Q 009700 203 MPLLAQLNE--HSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG------- 272 (528)
Q Consensus 203 ~~Ll~ll~~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~------- 272 (528)
..+...... .....++..++.++..++... | .....+++.|+.++.+ ++.....++.+|..+++.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 332222100 134678888888888887664 3 1235677888888766 455567777788777642
Q ss_pred ChHHHHH---HHHh---CcHHHHHHHhcC-------------------CChhhHHHHHHHHhHhhcCCcchhHHHhccC-
Q 009700 273 TNDKIQA---VIEA---GVCPRLVELLLH-------------------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ- 326 (528)
Q Consensus 273 ~~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~- 326 (528)
....... .+.. .+++.+..++.. .+..+...++.++.+...--+. ..+.+..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~ 248 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENC 248 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccc
Confidence 1111111 1111 133334444432 1234666778887766553332 1233332
Q ss_pred -ChHHHHHHhcccCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CcHHHHHHHHc--------cCChHHHHHHHHH
Q 009700 327 -GLPRLYQLLTQNYKKSIKKEACWTISNITAGS--RSQIQAVIEA---NIIAPLVYLLQ--------HAEFEVKKEASWA 392 (528)
Q Consensus 327 -~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~~~a~~a 392 (528)
+++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+. ..+.++.+..+..
T Consensus 249 ~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 249 KLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp HHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 6666666554 5678999999999999733 3433223221 11223444431 1235666667767
Q ss_pred HHHhcCCCCHHHHHHHHH-----------CCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 393 ISNATSGGTREQIQFLVS-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
+..+.. . ...++. .++++.++.+..+++..+...++..-..+++.
T Consensus 326 l~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 326 LCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 666652 1 111111 13466777777777766666666555545543
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.33 Score=45.01 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=88.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcC----cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAG----VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g----~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
..+.+.++ =..+.++-++..+|-++.. ......+.+.+ ++..+...+.+...+..+..++++++|+.. ++..
T Consensus 106 ~~l~kil~-WP~~~~fPvLDLlRl~~l~--p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g 181 (304)
T 3ebb_A 106 QILWKAIN-CPEDIVFPALDILRLSIKH--PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAG 181 (304)
T ss_dssp HHHHHHHT-SCTTTCHHHHHHHHHHTTS--HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHH
T ss_pred HHHHHHHc-CCHHhHHHHHHHHHHHHcC--ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cchh
Confidence 44444442 2234566777777755542 12222222221 233344555444346779999999999998 6667
Q ss_pred HHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH--HHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 151 TRVVIEH--GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR--DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 151 ~~~i~~~--g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
+..+... .+++.+...+.+++..++..++.++.|++......+ +... ..+..+...+....+.+....++.+|.
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 7766642 245555555566789999999999999984211000 1100 023334444544457778888888888
Q ss_pred hhcCC
Q 009700 227 NFCRG 231 (528)
Q Consensus 227 ~l~~~ 231 (528)
+|...
T Consensus 260 tL~~~ 264 (304)
T 3ebb_A 260 TLISD 264 (304)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 88865
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=93.69 E-value=3.2 Score=39.85 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=95.3
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----C------CChHHHHHHHHHHHHHhc
Q 009700 77 MVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----H------DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 77 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~ 145 (528)
++..|++.. .......+..|+.-+...+..=++.+. .+++..|+.+|.. . .+...+..++.||..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 444555432 222233456666555543112244554 4567777776642 1 125789999999999987
Q ss_pred CChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hH-HHHHH----------hcCChHHHHHhhccc
Q 009700 146 GTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SC-RDLVL----------SHGALMPLLAQLNEH 212 (528)
Q Consensus 146 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~Ll~ll~~~ 212 (528)
+......++. .+++..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+..+
T Consensus 88 -~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 88 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred -CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 5555666655 4678999999999999999999999999985443 21 22221 223455677777545
Q ss_pred hhhHHHHHHHHHhhhhcCCCC
Q 009700 213 SKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.+.++...++..+-.+....+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 566666666666666665544
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.60 E-value=3.9 Score=36.65 Aligned_cols=100 Identities=9% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
-.+++..+....+.+...+...+.++... ++. .+ ..+++.++.+..+.+ .+++...+..+...+...++...
T Consensus 18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~--ll--~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-- 89 (257)
T 3gs3_A 18 VDWCNELVIASPSTKCELLAKVQETVLGS-CAE--LA--EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-- 89 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG--GH--HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH--
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh--HH--HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444444423368888999999977663 222 11 335778888766666 89999999999888864443322
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNV 185 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl 185 (528)
.+++.|..+|.++++.+...++.+.+++
T Consensus 90 ---~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 ---HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3568888899988999999999888876
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=7.4 Score=37.05 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..+...+..++.++-.. ++. .-..+++.++.+-.+.+ .+++...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888876642 332 22567999999988887 99999999999888874444322 256788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 009700 167 LGSASDDVREQAVWALGNV 185 (528)
Q Consensus 167 L~~~~~~i~~~a~~~L~nl 185 (528)
|.+.++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9888999999999988887
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=91.88 E-value=6.5 Score=37.58 Aligned_cols=233 Identities=12% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
..++...+..|+.+++++++.=|+..-.+|..+-+.-...|..+.. .+-..+.+.+.......-....+.+++.+..+.
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 3344456778999999999999999999999987665555554332 122333444422222222334555555555554
Q ss_pred CCCCh-hhhHHHHHHHHHHhcCCCHH-HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 233 PPAPF-DQVRPALAALQHLIFSSDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 233 ~~~~~-~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
..+-. ....-...+|+.+.....-. .-.....++......++..... ++..++..=-..+..-...-+.-+..
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 22222 22222334455554443321 1122233333333333322222 12222221111333223333444555
Q ss_pred hhcCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCcHHHHHHHH----ccC-
Q 009700 311 IVTGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE---ANIIAPLVYLL----QHA- 381 (528)
Q Consensus 311 l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----~~~- 381 (528)
+....+ ...+.+ ...++..+...+.++ +..|-+.|+....| + .+..++. ..++|.+...+ ...
T Consensus 278 iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~~~HW 349 (403)
T 3fga_B 278 ILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHW 349 (403)
T ss_dssp HHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 554332 222111 123556677777777 77777777655422 1 1112221 12445544443 322
Q ss_pred ChHHHHHHHHHHHHhcCC
Q 009700 382 EFEVKKEASWAISNATSG 399 (528)
Q Consensus 382 ~~~v~~~a~~aL~nl~~~ 399 (528)
+..++..|..++.-+...
T Consensus 350 n~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 350 NKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 788888888888777553
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.93 E-value=2.2 Score=38.88 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHhHhhcCCcchhHHHh-ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCcHHHH
Q 009700 298 TTVLVPALRTVGNIVTGDDTQTQCVI-DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE--ANIIAPL 374 (528)
Q Consensus 298 ~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L 374 (528)
......|+..|..++.......+.+- +..++..|+ +.... .+.+++.|+.+|+.....+|..+..+.+ ..++..+
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 34567788888888876555444333 333333333 22333 6789999999999999999999988875 3455555
Q ss_pred HHHHcc-------CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHH
Q 009700 375 VYLLQH-------AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 441 (528)
Q Consensus 375 ~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~ 441 (528)
+.-|.. ....+++.-+.+|.-++... ..+ ....+..|..++... ++.++..++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 554443 23456667777777777743 111 134566666666666 88999999999988885
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.79 E-value=7.2 Score=35.53 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCC------CHHHHHHHHHHHHhhccCChHHHHHHH-HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 241 RPALAALQHLIFSS------DEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 241 ~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
+.-+..+..+++++ |.+....++-.|..++.........+- +..++..|+ +.....+.+++.|.++|+....
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 34444455555554 455678888888888765443333332 334455555 3344667799999999999999
Q ss_pred CCcchhHHHhc--cCChHHHHHHhcc----c--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--Ch
Q 009700 314 GDDTQTQCVID--NQGLPRLYQLLTQ----N--YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EF 383 (528)
Q Consensus 314 ~~~~~~~~~~~--~~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~ 383 (528)
+++.....+.+ ..++..+..-|.. . ....+++.-+.+|.-|...+... ....+..|.+++... ++
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCH
Confidence 99987766654 2444444443332 1 13467777888888887654211 134567788877777 89
Q ss_pred HHHHHHHHHHHHhc
Q 009700 384 EVKKEASWAISNAT 397 (528)
Q Consensus 384 ~v~~~a~~aL~nl~ 397 (528)
.+|..++..+..+.
T Consensus 175 ~~k~Kvl~li~d~f 188 (315)
T 3qml_C 175 QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999998888776
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=88.08 E-value=10 Score=36.88 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=118.5
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+..++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+.+++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 344445567889999999999999999999988876554455444321 2233445543333333345666777777666
Q ss_pred CCCCCh-hhhHHHHHHHHHHhcCCCHHH-HHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 232 KPPAPF-DQVRPALAALQHLIFSSDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~-~~~~~~l~~L~~ll~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
...+-. ....-...+|+.+.....-.. -.....++......++..... ++..|+..=-..+..-...-+.-|.
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 532222 222233444555555443221 122223333333333322222 1222222211133332333444455
Q ss_pred HhhcCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCcHHHHHHHHcc-----
Q 009700 310 NIVTGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE---ANIIAPLVYLLQH----- 380 (528)
Q Consensus 310 ~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~----- 380 (528)
.+....+ ...+.+ -..++..+...+.++ +..|-+.|+....| +... .++. ..++|.++..+..
T Consensus 310 eile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~s~~H 381 (449)
T 2npp_B 310 EILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTH 381 (449)
T ss_dssp HHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHHHHHh
Confidence 5554332 222212 123566677777877 77787777655432 2212 2221 1245666665522
Q ss_pred CChHHHHHHHHHHHHhcCC
Q 009700 381 AEFEVKKEASWAISNATSG 399 (528)
Q Consensus 381 ~~~~v~~~a~~aL~nl~~~ 399 (528)
-+..|+..|..++.-+...
T Consensus 382 Wn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 382 WNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp SSTTHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 1567888888887766553
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=87.65 E-value=10 Score=36.88 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----h
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT-----S 148 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~ 148 (528)
+..|+..+.|+|+..|...-..|+.+... -...+.++...+-..+.+++-......-..+.+.+++.|..|. +
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 56777788888888887777777766654 2333334433344555666543321233456778888888763 3
Q ss_pred hhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+....+. ..|+-+..... .....+-..++..++..+|..... ++..|++.= ...+..-....+.-|..
T Consensus 242 ehk~fl~-----~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHHH-----HTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 3332222 22333443322 233345555666555555543332 222233222 11122111222233333
Q ss_pred hcCCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh--CcHHHHHHHhcC-----CChh
Q 009700 228 FCRGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLH-----SSTT 299 (528)
Q Consensus 228 l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~-----~~~~ 299 (528)
+...-+...+ .....++..+..++.+.+-.|.+.|+....| +.....+.+. .++|.+...|.. -+..
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~ 385 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT 385 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence 4433222222 2335677778888999998888887754432 1111111111 255666665532 3567
Q ss_pred hHHHHHHHHhHhhcCCcc
Q 009700 300 VLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~ 317 (528)
++..+..++.-+...++.
T Consensus 386 V~~la~~vlk~l~e~d~~ 403 (449)
T 2npp_B 386 IHGLIYNALKLFMEMNQK 403 (449)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCHH
Confidence 888888888777665554
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=1.7 Score=35.21 Aligned_cols=74 Identities=9% Similarity=-0.093 Sum_probs=60.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.++++.++..|+..|-.++.+|...+...+.+..++..|+.++.. .++.+...++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455667778889999999999999999999988887777777888888888863 56788888888887776644
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=85.85 E-value=2.9 Score=33.88 Aligned_cols=73 Identities=10% Similarity=-0.103 Sum_probs=58.7
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~ 442 (528)
++..|..-+.++++.++..|+..|-.++.+|...+...+.+..++..|+.++.. .++.+...++..+......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355666778899999999999999999999888887777778889999988864 3678888888777665543
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=85.22 E-value=12 Score=35.73 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----h
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT-----S 148 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~ 148 (528)
+..|+..+.|+|+..|...-..|..+... -...+.++...+-..+.+++-....-.-..+.+.+++.+..|- .
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56677778888888877777777766554 2333444444344555555543321222345667777777654 2
Q ss_pred hhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+....+. ..|+-+...+. .....+-..++..+...+|..... ++..+++.= ...+..-...-+.-+..
T Consensus 209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 3322222 22223333322 233345555666666555543332 222233222 11222211222233333
Q ss_pred hcCCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHh----c-CCCh
Q 009700 228 FCRGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----L-HSST 298 (528)
Q Consensus 228 l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL----~-~~~~ 298 (528)
+...-+...+ .....++..+..++.+.+-.|.+.|+....| + .+-.++.. .++|.+...| . |-+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 4433222222 2335667778888889998888887655422 2 11112211 2444444443 2 3467
Q ss_pred hhHHHHHHHHhHhhcCCcc
Q 009700 299 TVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~ 317 (528)
.++..+..++.-+...++.
T Consensus 352 ~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 7888888888877765554
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=85.15 E-value=1.8 Score=34.73 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=58.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-|.++++.++..|+..|-.++.+|.......+.+..++..|..++...++.+...++..+.......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 45566677888899999999999999998888777666666677777878777778889998988887766543
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=84.45 E-value=26 Score=33.30 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
..+...+.-+..++-..+. .++ .++++.++.+-.+. +..+|+..+.+|...+....+.. ..+++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp---sLl-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP---TLL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG---GGG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCH---HHH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3566666666666543322 122 36888899888887 89999999999988876433332 23677888889
Q ss_pred ccCChHHHHHHHHHHHHhc--------CCCC-HHHHHHHHH--CCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 379 QHAEFEVKKEASWAISNAT--------SGGT-REQIQFLVS--QGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 379 ~~~~~~v~~~a~~aL~nl~--------~~~~-~~~~~~l~~--~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
.+.++.|.+.++.+.+++- .+.+ .+..+..++ ..+-..++.++++.+..++..+++.+..++..
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 8889999998888777763 1111 111111111 12345667778888899999999999888753
|
| >2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B | Back alignment and structure |
|---|
Probab=83.73 E-value=0.63 Score=27.75 Aligned_cols=38 Identities=34% Similarity=0.504 Sum_probs=25.3
Q ss_pred HHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhh
Q 009700 11 VRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRR 50 (528)
Q Consensus 11 ~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~ 50 (528)
+|...||+ +...++.++ |.+ ..+.-|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~r-Rr~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSER-RRR-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHH-HHH-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHH-HHH-HHHHHHHHHHHHHHHhcC
Confidence 47788998 444444444 444 577788888887776663
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=82.84 E-value=5.4 Score=43.51 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=111.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc---chhhHHHHHHHHHhhh--hcCCCCC
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE---HSKLSMLRNATWTLSN--FCRGKPP 234 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~---~~~~~~~~~a~~~L~~--l~~~~~~ 234 (528)
+.-|+.+--+..++||..|-.+|..+...-+..+.. +++.+++.|.. +.+.+-.+-|+++|.. +... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 456777777889999999999999998777766655 46777777754 3455556666666551 1100 12
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------------C---------------hHHHHH
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG--------------------T---------------NDKIQA 279 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--------------------~---------------~~~~~~ 279 (528)
........+++.|++....+.++++..+-.+...+... + ......
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 23445567777777776666665554444332222210 0 000000
Q ss_pred HHH--hCcHHHHHHHh-cCCC--hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH
Q 009700 280 VIE--AGVCPRLVELL-LHSS--TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 280 ~~~--~~~l~~L~~lL-~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 354 (528)
..+ .++...++.+. .... +.....+++.+.++....+. .....++..+++.+.++ ++.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 111 12334444555 2345 78888888886666643332 22334566788888888 999999999888666
Q ss_pred h
Q 009700 355 T 355 (528)
Q Consensus 355 ~ 355 (528)
.
T Consensus 364 l 364 (997)
T 1vsy_5 364 C 364 (997)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=82.84 E-value=3 Score=34.79 Aligned_cols=73 Identities=11% Similarity=-0.035 Sum_probs=57.4
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~ 442 (528)
++..|.+-+.++++.++..|+..|-.++.+|...+...+.+..++..|+.++.. .+..++..++..|......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345677778899999999999999999998877777777777888888888863 3577888888777765543
|
| >1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A | Back alignment and structure |
|---|
Probab=82.36 E-value=2.7 Score=33.52 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=52.2
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcc-cHHHHHHHhcCCC--------HHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECD-GLDKIENLQSHDN--------NEIYE 483 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~l~~L~~~~~--------~~v~~ 483 (528)
+++.|..-|+..++.++-.+|.+|..++..+... |...+.+.- .+..+...+..++ ..|+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~ 119 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 119 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence 4667778888888888888999999888766432 444444332 2333333333333 67999
Q ss_pred HHHHHHHHhcCCCcc
Q 009700 484 KAVKLLERYWVEEED 498 (528)
Q Consensus 484 ~a~~ii~~~~~~~~~ 498 (528)
+|..+++-.|+++..
T Consensus 120 ~AkEl~~ll~d~~~~ 134 (140)
T 1vdy_A 120 TAHETISAIFSEENG 134 (140)
T ss_dssp HHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHhCcCCC
Confidence 999999999986654
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=82.17 E-value=3.7 Score=33.87 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH-DNNEIYEKAVKLLER 491 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~-~~~~v~~~a~~ii~~ 491 (528)
++..|..-|.+.++.++..+|..|..+++.+... |...+-...+++.+..+... .++.|+.++..+|..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3556666778889999999999999999876532 55556566677777777644 678999999999998
Q ss_pred hcCC
Q 009700 492 YWVE 495 (528)
Q Consensus 492 ~~~~ 495 (528)
|-..
T Consensus 123 W~~~ 126 (163)
T 1x5b_A 123 WSEE 126 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=81.92 E-value=2.6 Score=34.82 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=57.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|++.++.+++.|+..|-.+....+.....++....++..|+.++....++.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999888875444455666677888888888753448888888887777664
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=80.85 E-value=3.2 Score=33.24 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=54.3
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
++..|..-|.+.++.++..+|..|..+++.++.. |...+....+++.+..+....++.|+.+...++..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3556666677888888888999998888876532 555555556667777776667899999999999987
Q ss_pred cC
Q 009700 493 WV 494 (528)
Q Consensus 493 ~~ 494 (528)
..
T Consensus 113 ~~ 114 (140)
T 3ldz_A 113 TD 114 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 528 | ||||
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 1e-131 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-93 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-42 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-17 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-14 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 9e-14 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-21 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-14 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-12 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-10 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 4e-19 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 9e-07 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-06 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-13 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-12 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-05 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 9e-12 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 7e-08 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-07 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-04 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 4e-04 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 389 bits (1000), Expect = e-131
Identities = 268/502 (53%), Positives = 342/502 (68%), Gaps = 15/502 (2%)
Query: 10 EVRKKSYKT--GVDADEARRRREDNLVEIRKNKREDSLLKKRR--------EGLILQSQP 59
E R+ ++K ADE RRRR+ VE+RK KR+++L K+R +
Sbjct: 4 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63
Query: 60 VTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPR 119
V+ + + +P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR
Sbjct: 64 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123
Query: 120 FVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAV 179
VEF+ + LQ EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FD 238
WALGNVAGDS RD VL A+ P+L L +K S++R ATWTLSN CRGK P P +
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 242
Query: 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298
V AL L LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302
Query: 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS 358
V PALR VGNIVTG+D QTQ VI+ LP L LL + K++IKKEACWTISNITAG+
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGN 361
Query: 359 RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT--REQIQFLVSQGCIKP 416
QIQAVI+AN+I PLV LL+ AE++ KKEA WAISNA+SGG + I++LVSQGCIKP
Sbjct: 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 421
Query: 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH 476
LCDLL D RI+ V L+ LENILK+GEADKEA N ++ I++ G++KI N Q +
Sbjct: 422 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 481
Query: 477 DNNEIYEKAVKLLERYWVEEED 498
+N++IYEKA K++E Y+ EEED
Sbjct: 482 ENDKIYEKAYKIIETYFGEEED 503
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 289 bits (739), Expect = 2e-93
Identities = 213/426 (50%), Positives = 283/426 (66%), Gaps = 11/426 (2%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 193 RDLVLSHGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAAL 247
RDLV+ HGA+ PLLA L LRN TWTLSN CR K PAP D V L L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LL N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 428 IVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVK 487
I+ V L+ + NI + E E S MI+EC GLDKIE LQ H+N +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAEKLGE-----TEKLSIMIEECGGLDKIEALQRHENESVYKASLN 427
Query: 488 LLERYW 493
L+E+Y+
Sbjct: 428 LIEKYF 433
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 154 bits (389), Expect = 5e-42
Identities = 59/451 (13%), Positives = 122/451 (27%), Gaps = 72/451 (15%)
Query: 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176
+P+ V++L D + Q A+ + + + V + G + K V LL S + +V++
Sbjct: 4 IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236
A AL N+ S + + + ++ L + + T L N
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 237 FDQVRPALAALQHLIF---------------SSDEEVLTDACWALSYLSDGTNDKIQAVI 281
+I D EV +A L LS +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 282 EAGVCPRLVELLLHSSTTVLVP--------------ALRTVGNIVTGDDTQTQCVIDNQG 327
+G+ L+ + + + R + T +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387
+ N + + + ++ I + L+ ++ +
Sbjct: 243 EKSSTGCFS-NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Query: 388 EASWAISNATSGGTREQIQ-----FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442
EA + + + + + LL + +V L N+ +
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361
Query: 443 GEADKE-----------------------------AGSTTANV------YSEMIDECDGL 467
+ A T N+ ++ L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421
Query: 468 DKIENL-QSHDNNEIYEKAVKLLERYWVEEE 497
+ I NL +S + + E A LL W +E
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 7e-17
Identities = 45/406 (11%), Positives = 107/406 (26%), Gaps = 44/406 (10%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
I +V + S N +Q A R L E R + V L R ++Q
Sbjct: 46 ICKLVDLLRSPNQNVQQAAAGALRNL-VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104
Query: 134 FEAAWALTNIASGTSEHTRVVIEH--------------GAVPKFVQLLGSASDDVREQAV 179
+ L N++S ++ + +V A
Sbjct: 105 KQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-----SKLSMLRNATWTLSNFCRG--- 231
L N++ + + G + L+A + + N L N
Sbjct: 165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224
Query: 232 ------KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285
+ + + + ++++ + + + +
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-----QCVIDNQGLPRLYQLLTQNYK 340
+ L+ S + A +T Q + + L Q+
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 341 KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF------EVKKEASWAIS 394
+ + +SN++ + V+ + + LL ++ A + +
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402
Query: 395 NATSGGTREQIQFLVSQGCIKPLCDLLVCPD-PRIVTVCLEGLENI 439
N + + + S + + +L P+ L ++
Sbjct: 403 NLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 29/302 (9%), Positives = 75/302 (24%), Gaps = 18/302 (5%)
Query: 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRP-ALAALQHLIFSSDEEV 258
G +P Q + + + C A + + L L+ S ++ V
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 259 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318
A AL L + V LL + + L + ++ D
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 319 TQCVIDNQGLPRLYQLL--------------TQNYKKSIKKEACWTISNITAGSRSQIQA 364
+ +I + +++ + + A + N+++ +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPL--CDLLV 422
+ +I L+ +Q+ + + + + L
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDK-IENLQSHDNNEI 481
+ + ++ T S + D + + + +
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 482 YE 483
E
Sbjct: 301 LE 302
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 9e-14
Identities = 36/250 (14%), Positives = 74/250 (29%), Gaps = 16/250 (6%)
Query: 129 LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
+ L + + + + + SD +
Sbjct: 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271
Query: 189 SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR------P 242
+P + A+ L + + K + L L N K +
Sbjct: 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS------ 296
L + L+ S + +V+ LS +S + + V+ V P + LL
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356
S +L A TV N++ + + L + L + + A +S++
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM-- 447
Query: 357 GSRSQIQAVI 366
S ++Q V+
Sbjct: 448 WSSKELQGVL 457
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 14/200 (7%)
Query: 44 SLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIE 103
+ L + + ++I + + + LEA + L+
Sbjct: 255 DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314
Query: 104 RCPPIEEVIR-----AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG 158
+ + + +P+ L + + A L+N++ V+ +
Sbjct: 315 KGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQ 371
Query: 159 AVPKFVQLLGSA------SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH 212
P+ +LL S S+D+ A + + N+ P S L ++
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431
Query: 213 SKLSMLRNATWTLSNFCRGK 232
+ A LS+ K
Sbjct: 432 ASPKAAEAARLLLSDMWSSK 451
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (231), Expect = 5e-21
Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 5/295 (1%)
Query: 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK 214
+ A+P+ +LL V +A + ++ S ++ S + ++ + +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274
+ R TL N + + AL ++ S + VL A L L
Sbjct: 74 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133
Query: 275 DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334
AV AG ++V LL ++ L + + G+ ++ + G L +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193
Query: 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAIS 394
+ + + + + + S A++EA + L L + + W +
Sbjct: 194 MRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 395 NATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEA 449
N + + +G + L LL D +VT L N+ +K
Sbjct: 253 NLSD----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.8 bits (218), Expect = 3e-19
Identities = 76/487 (15%), Positives = 147/487 (30%), Gaps = 64/487 (13%)
Query: 68 EKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GVVPRFVEFLDR 126
E +IP + + + E+ + +A +L E ++R+ +V V +
Sbjct: 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQN 70
Query: 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186
+ + A L N++ E + + G +P V++LGS D V A+ L N+
Sbjct: 71 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 187 GDSPSCRDLVLSHGALMPLLAQLNEHS--------------------------------- 213
+ V G L ++A LN+ +
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189
Query: 214 ---------KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACW 264
+L + L P + AL + + ++ + W
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249
Query: 265 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID 324
L LSD + G+ LV+LL V+ A + N+ + V
Sbjct: 250 TLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306
Query: 325 NQGLPRLYQLLTQNYKKSIKKE----ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH 380
G+ L + + + + E A +++ + AV + +V LL
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366
Query: 381 AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP---------RIVTV 431
+A+ + + QG I L LLV
Sbjct: 367 PSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425
Query: 432 CLEGLENILKIGEADKEAGSTTANVYS-EMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490
+EG+ + +V++ +I + + L I A +L
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485
Query: 491 RYWVEEE 497
++E
Sbjct: 486 ELAQDKE 492
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.8 bits (179), Expect = 2e-14
Identities = 60/390 (15%), Positives = 118/390 (30%), Gaps = 30/390 (7%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+ MV + N T + L + ++ +G V + + +L
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
+ + S S + ++E G + L S + + +W L N++ +
Sbjct: 204 -WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAAL--QHLI 251
+ G L+ LL + + + N + K AL +
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
Query: 252 FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311
E A L+ AV P +V+LL S L+ A +
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382
Query: 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKK---------------------SIKKEACWT 350
+ + + +PRL QLL + ++ I +
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442
Query: 351 ISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN-ATSGGTREQIQFLV 409
+ + ++ + N I V LL +++ A+ + A E I
Sbjct: 443 LHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI---E 498
Query: 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
++G PL +LL + + T L +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (164), Expect = 1e-12
Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 2/167 (1%)
Query: 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLY 332
N + A + P L +LL V+ A V + + ++ + Q + +
Sbjct: 6 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65
Query: 333 QLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392
+ + + T+ N++ R + A+ ++ I LV +L V A
Sbjct: 66 RTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124
Query: 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
+ N + G ++ + LL + + + + + L+ +
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 44/188 (23%), Positives = 64/188 (34%), Gaps = 25/188 (13%)
Query: 105 CPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV 164
V +P V+ L L + N+A + H + E GA+P+ V
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLV 403
Query: 165 QLLGSASDDVR----------------------EQAVWALGNVAGDSPSCRDLVLSHGAL 202
QLL A D + E AL +A D R ++ +
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNTI 462
Query: 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDA 262
PL QL ++ R A L + K A + A A L L+ S +E V T A
Sbjct: 463 -PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521
Query: 263 CWALSYLS 270
L +S
Sbjct: 522 AAVLFRMS 529
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.1 bits (209), Expect = 4e-19
Identities = 38/241 (15%), Positives = 89/241 (36%), Gaps = 6/241 (2%)
Query: 110 EVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLG 168
V+ + P E D + + A L ++ ++ + + V + L
Sbjct: 12 RVLSQPMPPTAGEAEQAADQQERE-GALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE 69
Query: 169 SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228
+ + +R +A +G + + + ++ VL GAL LL L+ + ++ A + +S
Sbjct: 70 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 129
Query: 229 CRGKPPAPFDQVR-PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287
R + +R + L + +++ + + L L G + + G+
Sbjct: 130 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189
Query: 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEA 347
+LV L+ + L + ++VT + + + L +LL + + E
Sbjct: 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLRHRCQLLQQHEE 247
Query: 348 C 348
Sbjct: 248 Y 248
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 9e-07
Identities = 36/259 (13%), Positives = 66/259 (25%), Gaps = 47/259 (18%)
Query: 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL 335
V+ + P E + AL + ++ D G+ L
Sbjct: 9 SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD-FCQLSGMHLLVGRY 67
Query: 336 TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE-FEVKKEASWAIS 394
+ ++ A I + + + V+ + L+ LL V+ +A +AIS
Sbjct: 68 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127
Query: 395 NATSG-----------------------------------------GTREQIQFLVSQGC 413
G E L S G
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187
Query: 414 IKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL 473
++ L L+ L L +++ E++ L +
Sbjct: 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ---- 243
Query: 474 QSHDNNEIYEKAVKLLERY 492
Q + E E KLL+
Sbjct: 244 QHEEYQEELEFCEKLLQTC 262
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 5/177 (2%)
Query: 42 EDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLS 101
+ L+ R LI A L ++ +++ + + L
Sbjct: 71 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130
Query: 102 IERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161
E+ + + +R + + + +L+ ++A+ L N+ G EH + G V
Sbjct: 131 REQEAGLLQFLRLDGFS-VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189
Query: 162 KFVQLLGSASDDVREQAVWALGNVAGDSPS----CRDLVLSHGALMPLLAQLNEHSK 214
+ V L+ + E + AL ++ D P CR+ L L+ QL + +
Sbjct: 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 246
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.0 bits (162), Expect = 3e-12
Identities = 44/312 (14%), Positives = 98/312 (31%), Gaps = 26/312 (8%)
Query: 103 ERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162
E C ++P + ++ W L+ A + +
Sbjct: 424 EGCMQGMIPYLPELIP-HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 482
Query: 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL---NEHSKLSMLR 219
++ + ++ V+E A A + ++ + L++ ++ L +H L +L
Sbjct: 483 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY--ILDTLVFAFSKYQHKNLLILY 540
Query: 220 NATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEE-VLTDACWALSYLSDGTNDKIQ 278
+A TL++ P +Q DE+ L LS ++
Sbjct: 541 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 600
Query: 279 AVIEAGVCPRLVELLLHS-----------------STTVLVPALRTVGNIVTGDDTQTQC 321
E V R V L+ + ++ AL + + G +
Sbjct: 601 PYCEP-VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 322 VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA 381
++ + L Q+ +++ + + ++T ++ I + + L L
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE 718
Query: 382 EFEVKKEASWAI 393
V A+WAI
Sbjct: 719 FISVCNNATWAI 730
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-05
Identities = 51/309 (16%), Positives = 96/309 (31%), Gaps = 13/309 (4%)
Query: 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTN 142
SE+ + + + + + + + + P ++ +T
Sbjct: 57 SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 114
Query: 143 IASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD---LVLSH 199
IAS +PK LL S + E A AL + DS D L
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170
Query: 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVL 259
++P Q +HS + +A ++ F + A + L L + EV
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230
Query: 260 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319
+ C AL L + D++ + + +++ V AL +T +
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286
Query: 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379
+ + LP+L +L K S + + I Q
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346
Query: 380 HAEFEVKKE 388
H E +++E
Sbjct: 347 HDEDGIEEE 355
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 7e-08
Identities = 41/271 (15%), Positives = 83/271 (30%), Gaps = 18/271 (6%)
Query: 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189
+F A L S E V ++LL + +V+ AV LG +
Sbjct: 17 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76
Query: 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAAL 247
+ ++ L K + ++ L PPA +
Sbjct: 77 KEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131
Query: 248 QHLIFS-----SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
+ S D V +A ++ + + + + L+ L V
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
+ +G++V + + L L++N S + I+ I+ + +I
Sbjct: 191 RTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
+E II +V + E+++ A
Sbjct: 247 GEYLE-KIIPLVVKFCNVDDDELREYCIQAF 276
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 45/355 (12%), Positives = 116/355 (32%), Gaps = 27/355 (7%)
Query: 35 EIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQLEATT 94
E+ R L ++ Q + + ++ + + V S+++ L + +
Sbjct: 734 ELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSY 793
Query: 95 QFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154
+ A V + + ++ A +L + H +
Sbjct: 794 YSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLS 849
Query: 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK 214
+ ++ S S++V+ A +ALG+++ + L +L ++ K
Sbjct: 850 GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPK 901
Query: 215 LSM-LRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273
L ++ + + P+ V A L ++E L
Sbjct: 902 RQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG------ 953
Query: 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333
K+ + + PRL L+ S+ + V ++ ++ + +
Sbjct: 954 --KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLK 1010
Query: 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388
L ++ ++++ A T ++ S I+ ++ + + P +Y E+ +E
Sbjct: 1011 TL-EDPDLNVRRVALVTFNSAAHNKPSLIRDLL--DTVLPHLYNETKVRKELIRE 1062
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQA 178
F++ ++ + + A A I G + A+P ++L+ S VR+ A
Sbjct: 368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 427
Query: 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209
W +G + P + ++ L PLL L
Sbjct: 428 AWTVGRICELLP---EAAINDVYLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 33/291 (11%), Positives = 85/291 (29%), Gaps = 47/291 (16%)
Query: 159 AVPKFVQLL----GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK 214
+ +F QLL S ++R + L ++ D+ L + +
Sbjct: 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL--------QFAGLSSQVLIDENT 53
Query: 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274
R A L++ + S D +
Sbjct: 54 KLEGRIL---------------------AALTLKNELVSKDSVK-------TQQFAQRWI 85
Query: 275 DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334
++ + + + L+ + A + + I + + + +
Sbjct: 86 TQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDN 142
Query: 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEA--NIIAPLVYLLQHAEF--EVKKEAS 390
+++K+ + + + + Q QA++ + NI+ +V Q E V+ A
Sbjct: 143 TGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAAL 202
Query: 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 441
A++++ + ++ +C+ D + L I+
Sbjct: 203 NALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 18/144 (12%)
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
LD H+ + +A L AV ++ + R+ +
Sbjct: 25 FRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAF 72
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
LG + L + A + + C+ P V
Sbjct: 73 ILGQIKICKKCE------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIV 126
Query: 241 RPALAALQHLIFSSDEEVLTDACW 264
+ +
Sbjct: 127 EQSQITAFDKSTNVRRATAFAISV 150
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.82 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.78 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.76 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.68 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.66 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.55 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.49 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.47 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.45 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 99.4 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.33 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.33 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.14 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.13 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.12 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 99.05 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.7 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.69 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.35 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.3 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.18 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.81 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 96.65 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.45 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.89 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.79 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 95.24 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 94.72 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 90.24 | |
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 87.93 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 86.11 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 80.88 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-63 Score=508.36 Aligned_cols=490 Identities=54% Similarity=0.830 Sum_probs=427.9
Q ss_pred CCchHHhhccCC-C-CChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchh--------hhhhHHHhhccHHH
Q 009700 7 SRTEVRKKSYKT-G-VDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTE--------ANASIEKKLESIPS 76 (528)
Q Consensus 7 ~~~~~r~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~--------~~~~~~~~~~~l~~ 76 (528)
+.+++|++.||+ | .+++|+||||+++.++|||+||++.+.|||+.....+...+.. ......+..+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (503)
T d1wa5b_ 1 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 80 (503)
T ss_dssp CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred CCchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHH
Confidence 357899999998 6 5999999999999999999999999999997643222211110 11111223357899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
+++.+.+++...+..|+..++++++....++++.+++.|++|.|+++|+.+.++.++..|+|+|++++.+++..+..+..
T Consensus 81 ~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~ 160 (503)
T d1wa5b_ 81 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 160 (503)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999999988778889999999999999999987665889999999999999999999999999
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~ 235 (528)
.|+++.++.+|.+++.++++.|+|+|+||+.+++.+|+.+...|++++++.++ .+.+..+++.++|+|++++... +..
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~ 239 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQP 239 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccch
Confidence 99999999999999999999999999999999999999999999999999999 6777889999999999999876 455
Q ss_pred ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 236 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
......+++|.+..++.+.|++++..++|++.+++...++....+++.|+++.++.++.++++.++.+++.++++++.+.
T Consensus 240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~ 319 (503)
T d1wa5b_ 240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 319 (503)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence 56667899999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred cchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHH
Q 009700 316 DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395 (528)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 395 (528)
+.....+++.|+++.+..++.++ ++.+++.++|+|+|++.+++..+..+++.|+++.++.++.+++++++.+|+|+|+|
T Consensus 320 ~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~n 398 (503)
T d1wa5b_ 320 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 398 (503)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHH
Confidence 88888899999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHH
Q 009700 396 ATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL 473 (528)
Q Consensus 396 l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L 473 (528)
++..+ .++.+.++++.|+++.|+++|+..|++++..++++|.+++..++......+...+++...++++||+++|+.|
T Consensus 399 l~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~L 478 (503)
T d1wa5b_ 399 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 478 (503)
T ss_dssp HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred HHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHH
Confidence 98754 3577889999999999999999999999999999999999888765544444568899999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 474 QSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 474 ~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
++|+|++|+++|..|+++||++|+|
T Consensus 479 q~~~~~~i~~~A~~il~~~f~~~~~ 503 (503)
T d1wa5b_ 479 QQNENDKIYEKAYKIIETYFGEEED 503 (503)
T ss_dssp GGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HcCCCHHHHHHHHHHHHHHcCCcCC
Confidence 9999999999999999999986654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-47 Score=384.52 Aligned_cols=417 Identities=51% Similarity=0.838 Sum_probs=384.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.+++.+++.+++++++.+..|+.+++++++...+++++.+++.|++|.|+++|++.+++++|..|+++|.+++.++++.+
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~ 92 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 92 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence 57899999999999999999999999999876677788999999999999999876558999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchh----hHHHHHHHHHhhh
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK----LSMLRNATWTLSN 227 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~----~~~~~~a~~~L~~ 227 (528)
..+++.|++|.|+.+|.++++++++.|+++|+|++.+.+..+..+...|+++.++.++..... ......++|++.+
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999954332 3567789999999
Q ss_pred hcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHH
Q 009700 228 FCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306 (528)
Q Consensus 228 l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~ 306 (528)
++... +........+++|.+..++.+++++++..++|++.+++..+++....+...|+++.++.++.++++.++..+++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~ 252 (434)
T d1q1sc_ 173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252 (434)
T ss_dssp HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence 99886 34444566889999999999999999999999999999988888888888899999999999999999999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
++++++.+++.....+++.|+++.+..++.++ ++.++..|+|+++|++..+......+.+.|++|.++.++.+++++++
T Consensus 253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~ 331 (434)
T d1q1sc_ 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 331 (434)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence 99999998888888899999999999999998 99999999999999999889999899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhccc
Q 009700 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDG 466 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~ 466 (528)
..|+|+|+|++..++.+...++.+.|+++.|++++++.|++++..++++|.+++..++.... .+++...+++.||
T Consensus 332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~-----~~~~~~~~~~~~~ 406 (434)
T d1q1sc_ 332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE-----TEKLSIMIEECGG 406 (434)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHcCC
Confidence 99999999999988889999999999999999999999999999999999999998765432 5678999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 467 LDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 467 ~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
++.|+.|++|+|++|++.|.++|++||+
T Consensus 407 ~~~i~~L~~~~n~~i~~~a~~il~~~f~ 434 (434)
T d1q1sc_ 407 LDKIEALQRHENESVYKASLNLIEKYFS 434 (434)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999995
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-33 Score=284.19 Aligned_cols=367 Identities=25% Similarity=0.332 Sum_probs=320.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.|+..+++ .++.++..|+++|.++++.. ......+.+.|++|.|+.+|.+++ .+++..|+|+|+|++..+++.
T Consensus 119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~ 196 (503)
T d1wa5b_ 119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 196 (503)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence 568999999985 56779999999999998764 455677889999999999999888 899999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+.+.|+++.|+.++.+.++.++..++|+|.|++.............++++.++.++ .+.+.+++..++|+|.+++.
T Consensus 197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~ 275 (503)
T d1wa5b_ 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 275 (503)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999976544444455567899999999 77888999999999999998
Q ss_pred CCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 231 GKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 231 ~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
..+.. ......++++.++.++.+++..+...+++++++++.+.+.....+++.|+++.+..++.++++.++..++++++
T Consensus 276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~ 355 (503)
T d1wa5b_ 276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 355 (503)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 75322 22333678999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
|++.+++.....+++.|+++.++.++.++ +..++++|+|+|+|++. ..++.+..+++.|+++.|+++|...+.++.
T Consensus 356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~ 434 (503)
T d1wa5b_ 356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434 (503)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence 99999888888899999999999999998 99999999999999986 345678889999999999999999999999
Q ss_pred HHHHHHHHHhcCCC----------CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 387 KEASWAISNATSGG----------TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 387 ~~a~~aL~nl~~~~----------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
..++.+|.++...+ .......+.+.|+++.|..+..+++.++...|...|..++..
T Consensus 435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~ 500 (503)
T d1wa5b_ 435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 500 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 99999999987422 123445667889999998888899999998998888777643
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-32 Score=272.15 Aligned_cols=365 Identities=25% Similarity=0.362 Sum_probs=316.7
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.|++.|++ ++++++..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+++|.|++..+++.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~ 133 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 133 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence 679999999975 45789999999999998763 456778889999999999999988 999999999999999988888
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS-----DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
+..+.+.|+++.++.++...+ ......++|++.+++...+.........++++.++.++ .+.+++++..++|+|
T Consensus 134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l 212 (434)
T d1q1sc_ 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 212 (434)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence 999999999999999997743 35667889999999977655444445556788888888 778889999999999
Q ss_pred hhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 226 SNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 226 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
.+++...+... .....+++|.++.++.+++.+++..+++++.+++...+.....+++.|+++.++.++.+.++.++..+
T Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a 292 (434)
T d1q1sc_ 213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292 (434)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence 99998753222 22336789999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCCh
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEF 383 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 383 (528)
++++++++.........+.+.|+++.++.++.++ ++.++..|+|+++|++. ++++.+..+++.|+++.|+.++.+.++
T Consensus 293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~ 371 (434)
T d1q1sc_ 293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371 (434)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence 9999999998888888889999999999999998 99999999999999986 567888889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-----CCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHH
Q 009700 384 EVKKEASWAISNATSG-----GTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~ 440 (528)
+++..++++|.++... .++.....+.+.|+++.|-.+..++++++...+...|.+++
T Consensus 372 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f 433 (434)
T d1q1sc_ 372 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999998742 22345566678899999999999999999999998887754
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-31 Score=269.96 Aligned_cols=400 Identities=20% Similarity=0.216 Sum_probs=342.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|+..|+++++.++..|+.+|.+++... ......+.+.|++|.|+.+|++++ ++++..++++|.+++..+.+.+
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~ 178 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHH
Confidence 67999999999999999999999999998774 445667779999999999999988 9999999999999999888899
Q ss_pred HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+...|+++.|+.++.+ +...++..+++++.+++.+ +..+..+.+.|++++|+.++ .+++..++..+++++.+++.
T Consensus 179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~ 256 (529)
T d1jdha_ 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccc
Confidence 999999999999999965 5678999999999999865 45788899999999999999 77888999999999999986
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc--CCChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL--HSSTTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L 308 (528)
... ......+.++.|++++.+++..++..++++|++++..++.....+.+.++++.++..+. ...+.++..++++|
T Consensus 257 ~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL 334 (529)
T d1jdha_ 257 AAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence 542 23344789999999999999999999999999999988888888889999999999885 45677899999999
Q ss_pred hHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCCh--
Q 009700 309 GNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF-- 383 (528)
Q Consensus 309 ~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-- 383 (528)
++++..... ....+...+.++.++.++.++.+..++..+++++.|++.. +.....+.+.|+++.|++++.+++.
T Consensus 335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~ 413 (529)
T d1jdha_ 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHH
Confidence 999976543 2344667899999999998774567889999999999764 5566778899999999999976533
Q ss_pred --------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 384 --------------------EVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 384 --------------------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
++...++.++.+++. .+.....+.+.|+++.|+.+|.++++.++..++.+|.++....
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 491 (529)
T d1jdha_ 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence 455667778888876 4566677778999999999999999999999999999976432
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
+ ....+.+.|++..|..|.+++|+.++..|..++.++
T Consensus 492 ~------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 492 E------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp H------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred h------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 2 366788999999999999999999999999988653
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.9e-30 Score=266.88 Aligned_cols=403 Identities=17% Similarity=0.175 Sum_probs=336.4
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.++..|.+ ++++.+..|+.+|..+... .+....+++.|++|.|+.+|.+++ ++++..|+++|.+++.+++..
T Consensus 59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 135 (529)
T d1jdha_ 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence 357889998874 6788999999999998654 567788999999999999999988 999999999999999988888
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+.+.|++|.|+.+|++++++++..++++|.+++..++..+..+...|++++++.++.......++..+++++.+++.
T Consensus 136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~ 215 (529)
T d1jdha_ 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 88899999999999999999999999999999999988888899999999999999999777778899999999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
...........++++.|..++.+++.+++..+++++.+++...... ....|+++.|+.++.+++..++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~ 292 (529)
T d1jdha_ 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence 6544434445789999999999999999999999999998654321 1224689999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHHccCC-hHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSR---SQIQAVIEANIIAPLVYLLQHAE-FEV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~ll~~~~-~~v 385 (528)
++.+++.....+.+.++++.++.++... ..+.++..+++++.|++.... .....+...+.++.|+.++..++ ..+
T Consensus 293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~ 372 (529)
T d1jdha_ 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence 9998888777888999999999988543 267889999999999986432 23444557899999999998764 578
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh----------------------HHHHHHHHHHHHHHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP----------------------RIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----------------------~~~~~~l~~l~~i~~~~ 443 (528)
+..+++++.|++.. ++....+.+.|+++.|+.++.+.+. +++..+..++..+....
T Consensus 373 ~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~ 450 (529)
T d1jdha_ 373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence 88999999999884 4556778899999999999865433 34555555555554322
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
. -...+.+.|+++.|..+..+++++++..|...+..+..
T Consensus 451 ~------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 489 (529)
T d1jdha_ 451 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp H------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred H------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 1 24566789999999999999999999999999988754
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.7e-26 Score=230.85 Aligned_cols=367 Identities=17% Similarity=0.191 Sum_probs=279.1
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+.+|.|+++|++++ ++++..|+++|.+++.++++.+..+.+.|++|.|+++|.+++++++..|+++|+|++.+++..+.
T Consensus 2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46899999999998 99999999999999998999999999999999999999999999999999999999999998999
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHh----------------cCCCHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLI----------------FSSDEEV 258 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll----------------~~~d~~v 258 (528)
.+.+.|+++.++.++....+..++..++++|.+++...... .......++.+...+ ...+..+
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 99999999999999977778899999999999999875332 233334444443332 3457889
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC------ChhhHHHHHHHHhHh---------------------
Q 009700 259 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS------STTVLVPALRTVGNI--------------------- 311 (528)
Q Consensus 259 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~al~~L~~l--------------------- 311 (528)
+..+++++.+++...+.........|+++.++.++.+. .......+...+.+.
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence 99999999999887665544455567888888887531 111111111111110
Q ss_pred -----------------------------hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH--
Q 009700 312 -----------------------------VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-- 360 (528)
Q Consensus 312 -----------------------------~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 360 (528)
..........+...++++.++.++....++.++..+++++.+++.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence 0011112223334466777888887664788899999999999864321
Q ss_pred ---HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHH
Q 009700 361 ---QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTV 431 (528)
Q Consensus 361 ---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~ 431 (528)
....+.+.|++|.|+.++.++++.++..+++++++++.. ++....+ ..++++.++.+|.. .+++++..
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~ 396 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence 223344689999999999999999999999999999874 3333443 34678999998854 23568888
Q ss_pred HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCCc
Q 009700 432 CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 432 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
++.+|.++....+. ....+.+.||++.|..+. .++++.++..|..++.+++...+
T Consensus 397 a~~~L~~l~~~~~~-----------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhcCCHH-----------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 99999999865432 356677899999999997 45678999999999999987543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.5e-24 Score=214.83 Aligned_cols=362 Identities=15% Similarity=0.188 Sum_probs=267.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.||.|++.|++++++++..|+..|.+++..+ +.....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence 5899999999999999999999999998654 677889999999999999999988 99999999999999988999999
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh---------------ccchhhH
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL---------------NEHSKLS 216 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll---------------~~~~~~~ 216 (528)
.+.+.|+++.|+.++.+ .++.++..++++|++++..... +......| ++.++..+ ....+..
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence 99999999999998866 6789999999999999977653 33333333 34444333 1334678
Q ss_pred HHHHHHHHhhhhcCCCCCCCh-hhhHHHHHHHHHHhcCC------CHHHHHHHHHHHHhhcc------------------
Q 009700 217 MLRNATWTLSNFCRGKPPAPF-DQVRPALAALQHLIFSS------DEEVLTDACWALSYLSD------------------ 271 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~------------------ 271 (528)
++..+++++.+++........ ....++++.++.++.+. .......+...+.....
T Consensus 159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence 899999999999877532222 22256677777766421 11111111111111000
Q ss_pred --------------------------------CChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcc-
Q 009700 272 --------------------------------GTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDT- 317 (528)
Q Consensus 272 --------------------------------~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~- 317 (528)
........+...++++.++.++.. .++.+...+.+++.+++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (457)
T d1xm9a1 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence 000011112223456667777654 4667888899999999865543
Q ss_pred ----hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC------ChHHHH
Q 009700 318 ----QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA------EFEVKK 387 (528)
Q Consensus 318 ----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~ 387 (528)
....+...|+++.|+.++.++ ++.++..++++++|++.. +.....+ ..++++.++.++... +.+++.
T Consensus 319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~ 395 (457)
T d1xm9a1 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHH
Confidence 233455789999999999998 999999999999999864 4444444 446899999988643 357999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHh
Q 009700 388 EASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKI 442 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~ 442 (528)
.|+.+|.+++.. +++..+.+.+.|+++.|+.++.+. ++.+...+..+|.+++..
T Consensus 396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~ 450 (457)
T d1xm9a1 396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence 999999999975 457778888999999999999764 678899999999998643
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.5e-19 Score=164.54 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=173.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQ 208 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~l 208 (528)
.+.+..|+.+|.+++. +.+....+...|+++.++. ++.+++++++..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus 31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 6789999999999997 7778888999999999886 7888999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 209 LNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 209 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
+.++.++.++..++|+|++++.+.+... .....++++.|++++.+++..++..++++|.+++..+++....+.+.|+++
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~ 189 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence 9767788999999999999998874333 334578999999999999999999999999999988888888999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
.|+.+|.++++.++..|+++|++++..++........
T Consensus 190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999887766554443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.3e-18 Score=156.44 Aligned_cols=230 Identities=17% Similarity=0.166 Sum_probs=188.0
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHH-HhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHH
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRL 331 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 331 (528)
..+.+.+..|+.+|.+++.. .+....+...|+++.++. ++.++++.++..|+++|++++.+++.....+.+.|+++.|
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 34677889999999999965 446677888899998875 7888999999999999999999888877788899999999
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 332 YQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 332 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
+.++.+..++.++..++|++++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. +++....+.+.
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~ 185 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM 185 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence 99997654789999999999999999999998999999999999999999999999999999999875 45667788899
Q ss_pred CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh-hhcccHHHHHHH----h-cCCCHHHHHHH
Q 009700 412 GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI-DECDGLDKIENL----Q-SHDNNEIYEKA 485 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~l~~L----~-~~~~~~v~~~a 485 (528)
|+++.|+.++.+++++++..++++|.++....+.... ... .+.+....+..+ . .....+....+
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~----------~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~ 255 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR----------ECREPELGLEELLRHRCQLLQQHEEYQEELEFC 255 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH----------HHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH----------HHHHhhhhHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999999999999999999876543321 111 112222223322 2 23344566788
Q ss_pred HHHHHHhcC
Q 009700 486 VKLLERYWV 494 (528)
Q Consensus 486 ~~ii~~~~~ 494 (528)
..++..+|+
T Consensus 256 ~~ll~~~~~ 264 (264)
T d1xqra1 256 EKLLQTCFS 264 (264)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcC
Confidence 889988884
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.1e-16 Score=165.45 Aligned_cols=379 Identities=12% Similarity=0.123 Sum_probs=268.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+.+.++++++.++..|+..+..++...... .....++|.+..++.+.+ ..++..++.+|++++.... ..
T Consensus 205 ~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~---~~ 276 (588)
T d1b3ua_ 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE----DLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVG---PE 276 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH----HHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHC---HH
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhh---hh
Confidence 344555555666666666666666665442111 112336788888887776 7888888888888875211 12
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.....+++.+..++.+.++++|..++.+++.++... ...+....-..+++.+...+ .+.+..++..++.++..++..-
T Consensus 277 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~ 355 (588)
T d1b3ua_ 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred hhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc
Confidence 233457888999999999999999999999987432 22222223334566666776 7778889999888888776431
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
. .......++|.+..++.+++++++..++.++..+...-. ...+. ..+++.+..++.+.++.++..++.+++.++
T Consensus 356 ~--~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~--~~~~~-~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~ 430 (588)
T d1b3ua_ 356 G--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLS-QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp C--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC--HHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred c--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc--hhhhh-hHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1 123346678899999999999999998888877664321 11122 247888999999999999999999999987
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
..... ..+...+.+.+..++.++ ...+|..|+++++.++.. .++. ....++|.+..++.+++..+|..++.
T Consensus 431 ~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~ 502 (588)
T d1b3ua_ 431 GQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLF 502 (588)
T ss_dssp HHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred HHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 53221 122234566788888888 899999999999999752 2221 23348899999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHH
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIE 471 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 471 (528)
++..+....+.+. ....+++.+..+++++.+.++..++++|..+....+... +... ....++
T Consensus 503 ~l~~l~~~~~~~~----~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---------~~~~-----i~~~l~ 564 (588)
T d1b3ua_ 503 CINVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---------LQSE-----VKPILE 564 (588)
T ss_dssp HHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---------HHHH-----HHHHHH
T ss_pred HHHHHHHHcChHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---------HHHH-----HHHHHH
Confidence 9998876432222 234589999999999999999999999999876543211 2222 357888
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q 009700 472 NLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 472 ~L~~~~~~~v~~~a~~ii~~~ 492 (528)
.|++++|.+|+..|...++..
T Consensus 565 ~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 565 KLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHTTCSSHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-15 Score=156.20 Aligned_cols=380 Identities=11% Similarity=0.086 Sum_probs=279.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+.+.+++.++.+|..++..+..++..... ..+...++|.|..++++++ +.++..|+.++..++...+..
T Consensus 166 ~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--- 237 (588)
T d1b3ua_ 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--- 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH---
Confidence 45666677888999999999999988775321 2234567888999988887 899999999999987632221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
-....++|.+..++.++++.+|..++.+|++++.... ........++.+..++ .+.+.+++..++.++..++..-+
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~ 313 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHh
Confidence 1112368889999999999999999999999874321 1223334677777888 77888999999999999887653
Q ss_pred CCCh--hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 234 PAPF--DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 234 ~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.... .....++|.+...+.+.++.++..++.++..++..-.. .... ..+++.+...+.+.++.++..++.+++.+
T Consensus 314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~~~~-~~l~p~l~~~l~d~~~~v~~~~~~~l~~~ 390 (588)
T d1b3ua_ 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTI-EHLLPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HHHH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--hHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 2222 23467889999999999999999999888887643111 1122 23788999999999999999998888877
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
....... .+ ...+++.+..++.+. ++.+|..++.+++.++.. ..+. +...+.+.+..++.++...+|..|+
T Consensus 391 ~~~~~~~--~~-~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~ 462 (588)
T d1b3ua_ 391 NEVIGIR--QL-SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HHHSCHH--HH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred Hhhcchh--hh-hhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHH
Confidence 6433211 11 124677888888888 999999999999988741 1111 1223567788888899999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
++|+.++....++.. ...+++.+..++.+++...+..++.++..+....+... +. ...++.+
T Consensus 463 ~~L~~l~~~~~~~~~----~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---------~~-----~~ilp~l 524 (588)
T d1b3ua_ 463 SNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT-----KHMLPTV 524 (588)
T ss_dssp HHHHHHHHHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHTHHHH
T ss_pred HHHHHHHHHhCcHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH---------HH-----HHHHHHH
Confidence 999999875444432 23478889999999999999999999988887554211 12 2346778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..+..++.++|+..+.+.+..++.
T Consensus 525 l~~~~D~v~nVR~~a~~~l~~i~~ 548 (588)
T d1b3ua_ 525 LRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHH
Confidence 888889999999888888877654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.3e-13 Score=143.69 Aligned_cols=394 Identities=12% Similarity=0.163 Sum_probs=236.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh-hHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE-HTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 152 (528)
++.+.+.+.++++..+..|+.+|..++.+. .......+ ..++|.|+..+++++ +.++..|+|+|+.++..... ...
T Consensus 397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~ 473 (888)
T d1qbkb_ 397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD 473 (888)
T ss_dssp HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence 455556777889999999999998776532 11111111 235788999998888 99999999999998752111 111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.. -..+++.++..+.++++.++..|+++|.+++.... .....+ ..+++.++..+. ..+......+..++..++..
T Consensus 474 ~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~-~~~~~~~~~~~~al~~l~~~ 549 (888)
T d1qbkb_ 474 TY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFS-KYQHKNLLILYDAIGTLADS 549 (888)
T ss_dssp HH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHH
T ss_pred hh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHh
Confidence 12 23578888988888999999999999999973211 111111 012344444442 22222222222222222110
Q ss_pred C--CCCChhhhHHH-------------------------------------------HHHHHHHh---------------
Q 009700 232 K--PPAPFDQVRPA-------------------------------------------LAALQHLI--------------- 251 (528)
Q Consensus 232 ~--~~~~~~~~~~~-------------------------------------------l~~L~~ll--------------- 251 (528)
- ..........+ .+.+...+
T Consensus 550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 629 (888)
T d1qbkb_ 550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 629 (888)
T ss_dssp HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0 00000000111 11111111
Q ss_pred --cCCCHHHHHHHHHHHHhhccCChHHHHHH-HHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCCh
Q 009700 252 --FSSDEEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328 (528)
Q Consensus 252 --~~~d~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 328 (528)
...+.++...++.++..+...-......+ ....+++.+...+.+.++.++..|+.++|.++..........++ .++
T Consensus 630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~ 708 (888)
T d1qbkb_ 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM 708 (888)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence 01234445555555555443211122222 23457788888899999999999999999998766554433333 367
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC--hHHHHHHHHHHHHhcCCCCHHHH-
Q 009700 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE--FEVKKEASWAISNATSGGTREQI- 405 (528)
Q Consensus 329 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~- 405 (528)
+.+...|.++ ...++..|+|+++.|+....+.....+. .+++.|+.++.+++ ..++.+++.+|+.++..+ ++..
T Consensus 709 ~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~~ 785 (888)
T d1qbkb_ 709 PILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVA 785 (888)
T ss_dssp HHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHHG
T ss_pred HHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHHH
Confidence 7788888877 8899999999999998644444433333 47889999998764 569999999999998765 3333
Q ss_pred HHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHH
Q 009700 406 QFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 406 ~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
.++ ..+++.++..|.. .|.+-...+..+++.++...+..-. ..+..+ .+.+-.. ..+.++++..
T Consensus 786 ~~l--~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~------~~l~~~------~~~i~~~-~~~~~~~~~~ 850 (888)
T d1qbkb_ 786 PML--QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI------QDFIFF------CDAVASW-INPKDDLRDM 850 (888)
T ss_dssp GGG--GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG------GGHHHH------HHHHTTC-SSCCHHHHHH
T ss_pred hhH--HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH------HHHHHH------HHHHHhc-CCCCHHHHHH
Confidence 222 2367777777765 5555677889999999987765421 112221 1222222 2356888888
Q ss_pred HHHHHHHhc
Q 009700 485 AVKLLERYW 493 (528)
Q Consensus 485 a~~ii~~~~ 493 (528)
...++..|-
T Consensus 851 ~~~~l~~~~ 859 (888)
T d1qbkb_ 851 FCKILHGFK 859 (888)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.4e-13 Score=143.11 Aligned_cols=345 Identities=16% Similarity=0.192 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
.+..|..+|..+....+..-... ++|.+.+.+.+++ ...+..|+.+|+.++.+..+.....+ ..+++.++..+
T Consensus 373 ~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l 445 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCL 445 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhc
Confidence 45666666665554432222222 3566777777777 89999999999999986654433222 23678888999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChh-HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHH
Q 009700 168 GSASDDVREQAVWALGNVAGDSPS-CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 246 (528)
.++++.+|..++|+|+.++..... ..+. .-...++.++..+ .+.++.++..++++|.+++.............+++.
T Consensus 446 ~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~ 523 (888)
T d1qbkb_ 446 SDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDT 523 (888)
T ss_dssp TSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999998742211 1111 2234677778777 677889999999999999876544444556788888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccC------ChHHHHHHHH-------------------------------hCc----
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDG------TNDKIQAVIE-------------------------------AGV---- 285 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~------~~~~~~~~~~-------------------------------~~~---- 285 (528)
+...+...+......+..+++.++.. .+.....+.. .++
T Consensus 524 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~ 603 (888)
T d1qbkb_ 524 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC 603 (888)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH
Confidence 88888877666555555555444321 1111111100 000
Q ss_pred ---HHHHHHHhc-----------------CCChhhHHHHHHHHhHhhcCCcchhHH-HhccCChHHHHHHhcccCchhHH
Q 009700 286 ---CPRLVELLL-----------------HSSTTVLVPALRTVGNIVTGDDTQTQC-VIDNQGLPRLYQLLTQNYKKSIK 344 (528)
Q Consensus 286 ---l~~L~~lL~-----------------~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~~v~ 344 (528)
++.++.++. ..+..+...++.+++.++......... +....+++.+...+.+. ++.+|
T Consensus 604 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr 682 (888)
T d1qbkb_ 604 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVR 682 (888)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHH
Confidence 011111110 012334445555566555433332222 23345777888888888 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 009700 345 KEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424 (528)
Q Consensus 345 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 424 (528)
..|..+++.++..........++ .+++.++..+.+....++..|+|+++.++.....+...++- .+++.|+..++.+
T Consensus 683 ~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~ 759 (888)
T d1qbkb_ 683 QSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRP 759 (888)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCC
Confidence 99999999998755555444443 37888888888888999999999999998755444333332 2677888888764
Q ss_pred C--hHHHHHHHHHHHHHHHhhhh
Q 009700 425 D--PRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 425 ~--~~~~~~~l~~l~~i~~~~~~ 445 (528)
+ ..+.+.++.+|+.+....+.
T Consensus 760 ~~~~~v~~n~~~~lgrl~~~~p~ 782 (888)
T d1qbkb_ 760 NTPKTLLENTAITIGRLGYVCPQ 782 (888)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCHH
T ss_pred CccHHHHHHHHHHHHHHHHHCHH
Confidence 3 44788999999999887664
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.3e-12 Score=140.18 Aligned_cols=403 Identities=12% Similarity=0.111 Sum_probs=265.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..+++.+.+.|++.|++|+..|.+.+..... ..+.-....+++.|+.+|.+++ ++||..|+.||+.++..-++...
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhccc-ccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence 56788899999999999999999988865421 1111122347899999999888 99999999999999885443221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS------CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~------~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
..+++.|+..+.+++...+..+..+|..+...-+. ....+ ...+++.+...+.+..+..++..++.++..
T Consensus 82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~ 157 (1207)
T d1u6gc_ 82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD 157 (1207)
T ss_dssp ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 13568888888888888899888888777532211 11111 111344455555456677888899999988
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALR 306 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~ 306 (528)
+....+.........+++.+...+.+++..++..|+.+++.++...++. .. ..+++.++..+. +.+...+..++.
T Consensus 158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~ 233 (1207)
T d1u6gc_ 158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ 233 (1207)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence 8766544444455778889999999999999999999999998764422 11 135666666554 456667788899
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHH-----------
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLV----------- 375 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~----------- 375 (528)
+++.++...+...... -..+++.+...+.+. ++.+|..++.++..++...+........ .+++.+.
T Consensus 234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~ 310 (1207)
T d1u6gc_ 234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 310 (1207)
T ss_dssp HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhh
Confidence 9999987655432211 136788899999888 8999999999999987643322111110 0111111
Q ss_pred --------------------------HHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 376 --------------------------YLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 376 --------------------------~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
.......+.+|..|+.+|..++.... +....+ -..+++.+...+...++.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr 388 (1207)
T d1u6gc_ 311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK 388 (1207)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHH
Confidence 11123356789999999999887543 222222 34588999999999999999
Q ss_pred HHHHHHHHHHHHhhhhchhcc---------CCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 430 TVCLEGLENILKIGEADKEAG---------STTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~---------~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..++.++..++.......... ......+...+ ...++.+.....+.+..++..+..++..+..
T Consensus 389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~ 460 (1207)
T d1u6gc_ 389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 460 (1207)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHh--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 999999988876543221000 00000011111 1245666677788889998888887776643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.8e-10 Score=105.62 Aligned_cols=256 Identities=16% Similarity=0.142 Sum_probs=194.6
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
....+.|+++|++++ +.++..|+.+|..+.. + .+++.|+.++.++++.+|..|+++|+.+...... .
T Consensus 18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~ 84 (276)
T d1oyza_ 18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E 84 (276)
T ss_dssp TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence 445778899999988 9999999999998754 2 2479999999999999999999999998644332 1
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
+. .++.++..+.+++++.++..++.+|..++...+ ......++.+...+.+.++.++..++.+++.+...
T Consensus 85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~- 154 (276)
T d1oyza_ 85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK- 154 (276)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH-
Confidence 11 244556665578899999999999999986532 22346788888888888999999998888875432
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
..++.+..++...++.++..+..+++.+...... ..+.+...+.+. +..++..+.++++.
T Consensus 155 ----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~ 214 (276)
T d1oyza_ 155 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY 214 (276)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence 3567888888899998998888888877665433 233567777777 89999999999887
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHH
Q 009700 354 ITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVC 432 (528)
Q Consensus 354 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~ 432 (528)
+.. ...+|.|+..+.++ .+|..|+++|+.+.. .+.++.|..++.. +|.+++..+
T Consensus 215 ~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A 269 (276)
T d1oyza_ 215 RKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA 269 (276)
T ss_dssp TTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hhh-----------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence 632 34678888888754 588999999998743 2357777777765 578888888
Q ss_pred HHHHH
Q 009700 433 LEGLE 437 (528)
Q Consensus 433 l~~l~ 437 (528)
+++|.
T Consensus 270 ~~~L~ 274 (276)
T d1oyza_ 270 IDKLK 274 (276)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.7e-10 Score=105.76 Aligned_cols=253 Identities=14% Similarity=0.100 Sum_probs=189.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.|++.|.++++.++..|+..|..+-. ...+|.|++++++++ +.++..|+++|+.+....... .
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~-~ 85 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCE-D 85 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTH-H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccc-c
Confidence 46789999999999999999999986632 124899999999988 999999999999987532221 1
Q ss_pred HHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+ ++.+. .++.++++.++..++.+|++++...+..... .++.+...+ .+.+..++..+++++......
T Consensus 86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~~ 154 (276)
T d1oyza_ 86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVINDK 154 (276)
T ss_dssp HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcchH
Confidence 11 23333 3567789999999999999998655433222 355666666 677788998888888776432
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
..++.+..++...+..+...+.+++..+...... ..+.+...+.+.+..++..+..+++.+
T Consensus 155 ----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~ 215 (276)
T d1oyza_ 155 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR 215 (276)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence 2356788888888999999988888887766542 345577778889999999999988765
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~ 390 (528)
.. ...++.|++.+.++ .+|..++++|+.+. + .+.+|.|..++... +.+++..|+
T Consensus 216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~ 270 (276)
T d1oyza_ 216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAI 270 (276)
T ss_dssp TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHH
Confidence 32 24577888888654 58999999999884 2 24788898888764 688999998
Q ss_pred HHHH
Q 009700 391 WAIS 394 (528)
Q Consensus 391 ~aL~ 394 (528)
.+|.
T Consensus 271 ~~L~ 274 (276)
T d1oyza_ 271 DKLK 274 (276)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8763
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4.1e-10 Score=110.82 Aligned_cols=390 Identities=12% Similarity=0.059 Sum_probs=247.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
-.+++.+.++|.+.+.+|-..|..+...+ + .+.++.|...+.+++ ...++..|+-.|.|...........
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~ 73 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAVEN--L-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 73 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence 35666777999999999999999887642 1 124677788776543 3678888888888877643222111
Q ss_pred H-----------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc-hhhHHHHHH
Q 009700 154 V-----------IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-SKLSMLRNA 221 (528)
Q Consensus 154 i-----------~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a 221 (528)
- ....+.+.++..+.++++. +..++.+++.++...... -.-.+.++.++..+... .+...+..+
T Consensus 74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~ 149 (458)
T d1ibrb_ 74 QYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST 149 (458)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence 1 1122445566766665443 334455555554211000 00113566677766332 345677788
Q ss_pred HHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChHHHH-HHHHhCcHHHHHHHhcCCC
Q 009700 222 TWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHSS 297 (528)
Q Consensus 222 ~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~ 297 (528)
+.++..++... +.........+++.+...+.++ +.+++..++.++..+......... ......+.+.+...+.+++
T Consensus 150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (458)
T d1ibrb_ 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 229 (458)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence 88888887654 2333344577888888888764 478999999999988865443221 1122235677788888899
Q ss_pred hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH---------------
Q 009700 298 TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI--------------- 362 (528)
Q Consensus 298 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~--------------- 362 (528)
+.++..++.+++.++..........+.......+...+.+. +..++..++..+..++.......
T Consensus 230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
T d1ibrb_ 230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 308 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence 99999999999999876654433233333445555666666 88899999999888864211111
Q ss_pred -----HHHHHcCcHHHHHHHHcc-------CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHH
Q 009700 363 -----QAVIEANIIAPLVYLLQH-------AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVT 430 (528)
Q Consensus 363 -----~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~ 430 (528)
.......++|.+...+.. .+..++..|..++..++.....+.... +++.+...+.++++.++.
T Consensus 309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~ 383 (458)
T d1ibrb_ 309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD 383 (458)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence 001112244555555432 234688888888888876544333333 466788889999999999
Q ss_pred HHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 431 VCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 431 ~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.++.+|..+........ ..++. ...++.|..+.+++++.|+..|.+.+.++.+
T Consensus 384 aal~~l~~i~~~~~~~~------~~~~l-----~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 384 AAVMAFGCILEGPEPSQ------LKPLV-----IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp HHHHHHHHTSSSSCTTT------TCTTT-----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHhH------HHHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999988775432111 11111 2245777778899999999999999988753
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.7e-10 Score=113.62 Aligned_cols=361 Identities=13% Similarity=0.094 Sum_probs=225.8
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcccCCchhH-H----------HHhcCcHHHHHHhhcCCCChHHHHHHHHHH
Q 009700 74 IPSMVQGVLS--ENSGLQLEATTQFRKLLSIERCPPIE-E----------VIRAGVVPRFVEFLDRHDLPQLQFEAAWAL 140 (528)
Q Consensus 74 l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~-~----------~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L 140 (528)
+..+...+.+ .+..+|..|+..|++.+... .+... . -....+.+.+++.+.+++ +. +..++.++
T Consensus 36 ~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~~ 112 (458)
T d1ibrb_ 36 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQCV 112 (458)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHHH
Confidence 4556666654 34678888988998888653 11111 1 112345666778777765 33 33445555
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-chhhHH
Q 009700 141 TNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-HSKLSM 217 (528)
Q Consensus 141 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~ 217 (528)
..++...... -.-.+.++.++..+.+ .+...+..++.+++.++.........-....+++.++..+.. +.+..+
T Consensus 113 ~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v 189 (458)
T d1ibrb_ 113 AGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189 (458)
T ss_dssp HHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHH
Confidence 5554410000 0012567888888765 557888899999998874332111000111245666666643 346789
Q ss_pred HHHHHHHhhhhcCCCCC--CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 218 LRNATWTLSNFCRGKPP--APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 218 ~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+..++.++.++....+. ..........+.+..++.+++++++..++.++..++...+......+...+...+...+.+
T Consensus 190 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 269 (458)
T d1ibrb_ 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 269 (458)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998865421 1122334566778888888999999999999999987655433222233344455666778
Q ss_pred CChhhHHHHHHHHhHhhcCCcchhH--------------------HHhccCChHHHHHHhccc------CchhHHHHHHH
Q 009700 296 SSTTVLVPALRTVGNIVTGDDTQTQ--------------------CVIDNQGLPRLYQLLTQN------YKKSIKKEACW 349 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l~~~~~~~~~--------------------~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~ 349 (528)
.++.++..++..+..++........ ......+++.+...+... .+..++..+..
T Consensus 270 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 349 (458)
T d1ibrb_ 270 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 349 (458)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHH
Confidence 8888999999888887642211100 000112334444444321 13458888999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
++..++...++.. + ..+++.+...+.++++.+|..|+.+|+.++.+...+..... -..+++.++.+++++++.++
T Consensus 350 ~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR 424 (458)
T d1ibrb_ 350 CLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVR 424 (458)
T ss_dssp HHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHhccHhh---h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHH
Confidence 9988876332222 1 12567777888899999999999999999875433322111 13478899999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 009700 430 TVCLEGLENILKIGEA 445 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~ 445 (528)
..++++|.++....++
T Consensus 425 ~~a~~~l~~i~~~~~~ 440 (458)
T d1ibrb_ 425 DTAAWTVGRICELLPE 440 (458)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999876543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=4.9e-09 Score=111.57 Aligned_cols=394 Identities=13% Similarity=0.145 Sum_probs=230.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
+...+.+.+...+..|+..+..+.... ........-..+++.++..+.+++ +.++..++|+++.++..... .+..
T Consensus 374 ~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~ 448 (861)
T d2bpta1 374 VEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SIDP 448 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSCT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhhh
Confidence 334455778888888988888777543 222222222347899999999888 99999999999998762111 1111
Q ss_pred cCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCC----Ch-hHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhh
Q 009700 157 HGAVPKFVQLL---GSASDDVREQAVWALGNVAGD----SP-SCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSN 227 (528)
Q Consensus 157 ~g~i~~L~~lL---~~~~~~i~~~a~~~L~nl~~~----~~-~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~ 227 (528)
...++.++..+ ...++.++..+++++..++.. .. ....... ..+..++.... ...+..++..+..++..
T Consensus 449 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~~ 526 (861)
T d2bpta1 449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 23344444332 135678888888888887631 11 0111111 12344444442 23456788888888888
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHh----cCCC-----------HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLI----FSSD-----------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll----~~~d-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 292 (528)
+....+.........+.+.+...+ .... ..++..++.++..+..........+.+ .+++.+...
T Consensus 527 ~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~ 605 (861)
T d2bpta1 527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRL 605 (861)
T ss_dssp HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhhh
Confidence 876654333333334444433333 2211 123444444555444332222222222 256666777
Q ss_pred hcC-CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcH
Q 009700 293 LLH-SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANII 371 (528)
Q Consensus 293 L~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 371 (528)
+.. .+..++..++.+++.++..........++ .+++.+...+.+. ++.++..|+.+++.++..........+. .++
T Consensus 606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~ 682 (861)
T d2bpta1 606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMM 682 (861)
T ss_dssp HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHH
T ss_pred cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHH
Confidence 755 44668889999999998755443332332 4788888899888 8899999999999998754444444433 378
Q ss_pred HHHHHHHccC--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC----Ch-------HHHHHHHHHHHH
Q 009700 372 APLVYLLQHA--EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP----DP-------RIVTVCLEGLEN 438 (528)
Q Consensus 372 ~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~-------~~~~~~l~~l~~ 438 (528)
+.|++.+.+. +..+|..++.+|+.++........+++-. +++.+...+... +. .+++.++.++..
T Consensus 683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 760 (861)
T d2bpta1 683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVG 760 (861)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 8888888765 56899999999999876443344444433 455555555432 21 356677777777
Q ss_pred HHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh----cCCCHHHHHHHHHHHHHh
Q 009700 439 ILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ----SHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 439 i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~----~~~~~~v~~~a~~ii~~~ 492 (528)
++........ ...++...+ ++.+..+. .+.+.++...+..++..+
T Consensus 761 i~~~~~~~~~----~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l 809 (861)
T d2bpta1 761 IVAGLHDKPE----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809 (861)
T ss_dssp HHHHTTTCHH----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHH----HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHH
Confidence 7653322111 123344433 23333333 235677777777766543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=2.5e-08 Score=105.99 Aligned_cols=388 Identities=12% Similarity=0.068 Sum_probs=241.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHH-
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRVV- 154 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i- 154 (528)
|...+.++|+.+|.+|-..|.++... ++ .+.++.|.+.+.+.+ +..+|..|+-.|.|...........-
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~ 80 (861)
T d2bpta1 10 LENSILSPDQNIRLTSETQLKKLSND--NF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhc--Cc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 33456799999999999999887643 11 234777888886543 46888889888888765332211110
Q ss_pred -----------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 155 -----------IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 155 -----------~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
....+-..++..+.++++.+|..++.+++.++... |..+ . ...++.|+..+..+.+..++..++
T Consensus 81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al 156 (861)
T d2bpta1 81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASL 156 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHH
Confidence 00112356677788889999999999999987321 1100 0 013566666664445566788889
Q ss_pred HHhhhhcCCCCCCC---hhhhHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhccCChHHHH-HHHHhCcHHHHHHHhcCC
Q 009700 223 WTLSNFCRGKPPAP---FDQVRPALAALQHLIFS--SDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 223 ~~L~~l~~~~~~~~---~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~ 296 (528)
.+|..++....... ......+++.+...+.+ .+..++..++.++.++...-..... ......+++.+...+.++
T Consensus 157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (861)
T d2bpta1 157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence 99999986642222 22334555555555543 3578999999999988765443221 111223667788888999
Q ss_pred ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH----------
Q 009700 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI---------- 366 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------- 366 (528)
++.++..++.++..++..........+..-+...+.....+. ++.++..++..+..++...........
T Consensus 237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (861)
T d2bpta1 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY 315 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999999876554333222222222333444555 888999998888877642111111110
Q ss_pred ------HcCcHHHHHHHHccC-------ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHH
Q 009700 367 ------EANIIAPLVYLLQHA-------EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCL 433 (528)
Q Consensus 367 ------~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l 433 (528)
-..++|.+...+... +...+..+..++..++.......... .++.+...+.+.++..+..++
T Consensus 316 ~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~ 390 (861)
T d2bpta1 316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHH
Confidence 112456666665432 34577777777776655322222222 244556677888999999998
Q ss_pred HHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 434 EGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 434 ~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.++..+........ ....+. ..++.+..+..++++.|+..|.+.+.++..
T Consensus 391 ~~l~~i~~~~~~~~---------~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T d2bpta1 391 MAFGSIMDGPDKVQ---------RTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp HHHHHTSSSSCHHH---------HHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhh---------HHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 88887775443211 111221 235677777889999999999888876543
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.7e-09 Score=120.15 Aligned_cols=398 Identities=11% Similarity=0.074 Sum_probs=241.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCC----chhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERC----PPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
++.|+..+.+++...+..+..+|+.+...-.. ......+-..+++.+...+....+..++..|+.+|..+....+.
T Consensus 85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~ 164 (1207)
T d1u6gc_ 85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164 (1207)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 44555555566666666666666655443211 11111122334566666666655588999999999988762221
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
..... ...+++.++..+.++.+.+|..|+.+|+.++...+.. .-...+..++..+..+.+...++.++.++..++
T Consensus 165 ~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~ 239 (1207)
T d1u6gc_ 165 LLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 239 (1207)
T ss_dssp SCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 11000 0125677777888899999999999999998655431 112346677777755556666777888888888
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHH--------------------
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-------------------- 289 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L-------------------- 289 (528)
+..+.........++|.+...+...+++++..++.++..++...+........ .+++.+
T Consensus 240 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~ 318 (1207)
T d1u6gc_ 240 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDEN 318 (1207)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-------------
T ss_pred HHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHh
Confidence 76544333445788999999999999999999998888876543321111110 011111
Q ss_pred -----------------HHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 290 -----------------VELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 290 -----------------~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.....+..+.++..++.+|+.++...+....... ..+++.++..+.+. +..+|..+..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~ 396 (1207)
T d1u6gc_ 319 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYL 396 (1207)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHH
T ss_pred hhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 1112234578899999999999877665543333 36888899999887 8899999999888
Q ss_pred HHhcC------------------CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 009700 353 NITAG------------------SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCI 414 (528)
Q Consensus 353 nl~~~------------------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 414 (528)
.+... .+...-.-.-..+++.+...+.+.+..++..+..++..++.........++.. .+
T Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~--~~ 474 (1207)
T d1u6gc_ 397 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV--LV 474 (1207)
T ss_dssp HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH--HH
T ss_pred HHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHh--hH
Confidence 87631 01000000112356777778888899999999999988865332111122111 35
Q ss_pred HHHHhhcCCC--ChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 415 KPLCDLLVCP--DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 415 ~~L~~ll~~~--~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
+.+...+... ...++..++.++..++....... +...+ ......+.....+++..+...|...+..+
T Consensus 475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~---------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l 543 (1207)
T d1u6gc_ 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV---------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL 543 (1207)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG---------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH---------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHH
Confidence 5666666543 44566778888888876543221 22222 12245555556677777777666555443
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=8.1e-08 Score=102.22 Aligned_cols=397 Identities=13% Similarity=0.093 Sum_probs=244.3
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcccCCch----------hHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHH
Q 009700 74 IPSMVQGVLS--ENSGLQLEATTQFRKLLSIERCPP----------IEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALT 141 (528)
Q Consensus 74 l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~ 141 (528)
+..|.+.+.+ .+..+|..|+..|++.+....... ...-....+...+++.+.+++ .++..++.+++
T Consensus 37 ~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~i~ 114 (876)
T d1qgra_ 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVA 114 (876)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHH
Confidence 4455555544 346789999999998886421100 001112335567788887765 34556778888
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCh-h-HHHHHHhcCChHHHHHhhcc-chhhH
Q 009700 142 NIASGTSEHTRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDSP-S-CRDLVLSHGALMPLLAQLNE-HSKLS 216 (528)
Q Consensus 142 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~-~-~~~~~~~~g~i~~Ll~ll~~-~~~~~ 216 (528)
.++...- .... =.+.+|.|++.+.++ ...++..++.+|+.++.+.. . .... ...+++.++..+.. +++..
T Consensus 115 ~i~~~~~-p~~~--Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~--~~~il~~i~~~l~~~~~~~~ 189 (876)
T d1qgra_ 115 GIACAEI-PVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNN 189 (876)
T ss_dssp HHHHHHG-GGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG--HHHHHHHHHHHHSTTCSCHH
T ss_pred HHHHHHC-Cccc--cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHcCcCccHH
Confidence 8876210 0000 025788898888663 47789999999999985322 1 1111 11245666666643 33567
Q ss_pred HHHHHHHHhhhhcCCCCC--CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc
Q 009700 217 MLRNATWTLSNFCRGKPP--APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
++..++.++.++...... ........+++.+...+.+++++++..++.++..++...++.....+...+...+...+.
T Consensus 190 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (876)
T d1qgra_ 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (876)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888877654311 111222346677778888899999999999999998766655544454456666777788
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhH--------------------HHhccCChHHHHHHhccc------CchhHHHHHH
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQ--------------------CVIDNQGLPRLYQLLTQN------YKKSIKKEAC 348 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~--------------------~~~~~~~l~~L~~lL~~~------~~~~v~~~a~ 348 (528)
+....++..++..+..++........ ......+++.+...+... .+..++..|.
T Consensus 270 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~ 349 (876)
T d1qgra_ 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHH
Confidence 88888888888877777642211100 001112334444444321 0335788888
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHH
Q 009700 349 WTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 349 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~ 428 (528)
.++..++...+..+ +. .+++.+...+.+.++..+..++.+++.+..+.......... ..+++.+...+.++++.+
T Consensus 350 ~~l~~l~~~~~~~~---~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~v 424 (876)
T d1qgra_ 350 VCLMLLATCCEDDI---VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HHHHHHHHHHGGGG---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHhhhhh---hh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHH
Confidence 88887764222211 11 14555666677889999999999999998876655544322 236888899999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
+..+++++..+++........ ..+...+ +..+.... ++++.+...+...+..+.
T Consensus 425 r~~a~~~l~~~~~~~~~~~~~-----~~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l~ 478 (876)
T d1qgra_ 425 RDTAAWTVGRICELLPEAAIN-----DVYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHHHHHCGGGTSS-----TTTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhhhh-----HHHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 999999999999865432210 1111111 23333322 456888888877776654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2.8e-08 Score=105.91 Aligned_cols=355 Identities=14% Similarity=0.076 Sum_probs=217.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCC-chhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCC-hhhH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERC-PPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGT-SEHT 151 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~-~~~~ 151 (528)
..+++.+.+++. .+..++..+..++...-+ ..+ .+++|.|++.+.+++ ...++..++.+|..++..- ++..
T Consensus 93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W-----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 166 (876)
T d1qgra_ 93 NYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (876)
T ss_dssp HHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHH
Confidence 456677776654 444566677766654200 112 357999999887654 3567888999999987622 2111
Q ss_pred HHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHH-HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 152 RVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRD-LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.. .-..+++.++..+.+ ++..++..++.++.+........-. .....-+++.+...+ .++++.++..++.++..+
T Consensus 167 ~~-~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l 244 (876)
T d1qgra_ 167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp GG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 11 112467788887765 4578999999999888754332110 001111244445555 677889999999999999
Q ss_pred cCCCCCCChhhh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHH--------------------HHHHhCcHH
Q 009700 229 CRGKPPAPFDQV-RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ--------------------AVIEAGVCP 287 (528)
Q Consensus 229 ~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--------------------~~~~~~~l~ 287 (528)
+...+....... ..+.+.+...+.+.++++...++..+..++........ ......+++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (876)
T d1qgra_ 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 876543322222 33455666777778888888887777666542211110 001112344
Q ss_pred HHHHHhcC-------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CH
Q 009700 288 RLVELLLH-------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SR 359 (528)
Q Consensus 288 ~L~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~ 359 (528)
.+...+.. ..+.++..|..++..++....... +. .+++.+...+.++ +...|..++++++.++.+ ..
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~ 399 (876)
T d1qgra_ 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEP 399 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCH
T ss_pred hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---hh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhH
Confidence 45555433 234577778788877775433221 11 2345666677777 889999999999999865 34
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHH
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i 439 (528)
....... ..+++.+...+.++++.++..|+|+++.++............-..+++.+...++ .++.+...+++++.++
T Consensus 400 ~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l 477 (876)
T d1qgra_ 400 SQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 4444443 3478999999999999999999999999875321110000000013445555554 4678888899999888
Q ss_pred HHhhh
Q 009700 440 LKIGE 444 (528)
Q Consensus 440 ~~~~~ 444 (528)
.....
T Consensus 478 ~~~~~ 482 (876)
T d1qgra_ 478 AEAAY 482 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1.2e-06 Score=82.93 Aligned_cols=318 Identities=12% Similarity=0.124 Sum_probs=197.6
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHH---HHHHhcC-C-hHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 159 AVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCR---DLVLSHG-A-LMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 159 ~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~---~~~~~~g-~-i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
++..++.+|.. +.+++.+..+..+..+..+.+... ....... . -.++..++ ..++.-....++..+..++...
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhcc
Confidence 56777787766 667888888888888775554221 1111111 1 23344444 5556666777777777777654
Q ss_pred CCCCh--hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH--HhCcHHHHHHHhcC-------------
Q 009700 233 PPAPF--DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI--EAGVCPRLVELLLH------------- 295 (528)
Q Consensus 233 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~------------- 295 (528)
+.... .........+..+....+.+...-++.++..+...+. ....+. +...++.++.+|..
T Consensus 154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~ 232 (477)
T d1ho8a_ 154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 232 (477)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence 32211 1112222334445567788887878888888877644 333332 22345555555532
Q ss_pred ----CChhhHHHHHHHHhHhhcCCcchhHHHhcc--CChHHHHHHhcccCchhHHHHHHHHHHHHhcCC----HH-HHHH
Q 009700 296 ----SSTTVLVPALRTVGNIVTGDDTQTQCVIDN--QGLPRLYQLLTQNYKKSIKKEACWTISNITAGS----RS-QIQA 364 (528)
Q Consensus 296 ----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~-~~~~ 364 (528)
....++..++.|++-++. .+.....+... +.++.++.++......++.+-++.++.|++... .. ....
T Consensus 233 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~ 311 (477)
T d1ho8a_ 233 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL 311 (477)
T ss_dssp ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 123668889999998886 33334444443 347888888876658889999999999998631 11 2334
Q ss_pred HHHcCcHHHHHHHHccC---ChHHHHHHHHHHHHh----------------------cCCCCHHHH-HHHHH--------
Q 009700 365 VIEANIIAPLVYLLQHA---EFEVKKEASWAISNA----------------------TSGGTREQI-QFLVS-------- 410 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl----------------------~~~~~~~~~-~~l~~-------- 410 (528)
++..++++.+ ..|... |+++....-. |... ..+ +|-+. +.+..
T Consensus 312 ~v~~~~l~~l-~~L~~r~~~Dedl~edl~~-L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~W-SP~H~se~FW~EN~~kf~e 388 (477)
T d1ho8a_ 312 LLLGNALPTV-QSLSERKYSDEELRQDISN-LKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNIDEFKK 388 (477)
T ss_dssp HHHHCHHHHH-HHHHSSCCSSHHHHHHHHH-HHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSGGGSS
T ss_pred HHHcchhHHH-HHHhcCCCCCHHHHHHHHH-HHHHHHHHHHhcCcHHHHHHHHhcCCCCC-CCCcCChhHHHHHHHhhcc
Confidence 5566666554 445443 6665533221 1111 111 11111 22221
Q ss_pred C--CChHHHHhhcC----------CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCC
Q 009700 411 Q--GCIKPLCDLLV----------CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDN 478 (528)
Q Consensus 411 ~--~~l~~L~~ll~----------~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~ 478 (528)
. .+++.|+.+|+ +.|+.++.+||.=+..+++..+.+ ...+++.|+-+.+..|+.|+|
T Consensus 389 ~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-----------r~il~~lg~K~~vM~Lm~h~d 457 (477)
T d1ho8a_ 389 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-----------IDVLDKTGGKADIMELLNHSD 457 (477)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-----------HHHHHHHSHHHHHHHHTSCSS
T ss_pred cchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-----------hHHHHHcCcHHHHHHHhcCCC
Confidence 1 35888999985 357888889999999999988764 456788999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 009700 479 NEIYEKAVKLLERYW 493 (528)
Q Consensus 479 ~~v~~~a~~ii~~~~ 493 (528)
++|+..|...+.++.
T Consensus 458 ~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 458 SRVKYEALKATQAII 472 (477)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887653
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=1.5e-06 Score=82.30 Aligned_cols=318 Identities=14% Similarity=0.059 Sum_probs=202.1
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhH----HHHhc--CcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIE----EVIRA--GVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~----~~~~~--g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.+..+++.+.. ..+++....+..+..++... +... ...+. -.-+.+..++..++ .-....+..++..++.
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d--~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~ 151 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ 151 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC--cchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence 46677777774 55666667777777777663 2221 11121 22345566665555 6677777778888877
Q ss_pred CChhhHH---HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHh--cCChHHHHHhhcc---------
Q 009700 146 GTSEHTR---VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLS--HGALMPLLAQLNE--------- 211 (528)
Q Consensus 146 ~~~~~~~---~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~Ll~ll~~--------- 211 (528)
....... .+.. ....+-.+..+.+......|+.++..+.... .+|..+.. ...+++++..|..
T Consensus 152 ~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~-~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~ 228 (477)
T d1ho8a_ 152 NGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATR 228 (477)
T ss_dssp TTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred ccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCc-cHHHHHHHcccchHHHHHHHHHHHhcccccch
Confidence 4333222 2222 2334444446678888888999999887664 47877643 3346666666632
Q ss_pred -------chhhHHHHHHHHHhhhhcCCCCCCChhhh--HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCh-----HH
Q 009700 212 -------HSKLSMLRNATWTLSNFCRGKPPAPFDQV--RPALAALQHLIF-SSDEEVLTDACWALSYLSDGTN-----DK 276 (528)
Q Consensus 212 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~-----~~ 276 (528)
.....++.+++.+++-|+........... ...++.++.+++ +..+.+..-++.++.|++.... ..
T Consensus 229 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~ 308 (477)
T d1ho8a_ 229 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 308 (477)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred hhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 12457788899999999875321111111 255788888886 5578999999999999987532 12
Q ss_pred HHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhc----------------------CCcchh-HHHh-------
Q 009700 277 IQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVT----------------------GDDTQT-QCVI------- 323 (528)
Q Consensus 277 ~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~----------------------~~~~~~-~~~~------- 323 (528)
...++..++++. +..|.. .++++.. .+..|..+.. =++.++ +.+.
T Consensus 309 ~~~~v~~~~l~~-l~~L~~r~~~Dedl~e-dl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf 386 (477)
T d1ho8a_ 309 KQLLLLGNALPT-VQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF 386 (477)
T ss_dssp HHHHHHHCHHHH-HHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred HHHHHHcchhHH-HHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhh
Confidence 334556566654 455544 3444332 2222222211 011111 1111
Q ss_pred ---ccCChHHHHHHhcc---------cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 324 ---DNQGLPRLYQLLTQ---------NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 324 ---~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
+..++..|+++|.+ +.++.+..-||.=|+.++.+.|..+..+-+.|+=..++++|.++|++||.+|+.
T Consensus 387 ~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 466 (477)
T d1ho8a_ 387 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALK 466 (477)
T ss_dssp SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 22468889999962 227888999999999999988888887778899999999999999999999999
Q ss_pred HHHHhcC
Q 009700 392 AISNATS 398 (528)
Q Consensus 392 aL~nl~~ 398 (528)
|+..+..
T Consensus 467 avQklm~ 473 (477)
T d1ho8a_ 467 ATQAIIG 473 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.35 E-value=1.7e-07 Score=72.23 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=87.8
Q ss_pred hcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHH
Q 009700 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372 (528)
Q Consensus 293 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 372 (528)
|.++++.+|..|+++|+.+.. ..++.|+..|.++ ++.+|..|+++|+++.. + +.+|
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~---------~~~~ 56 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---------RAVE 56 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h---------hhHH
Confidence 456778888888888876531 3467788999988 99999999999998742 2 2578
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHH
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~ 437 (528)
.|..++.++++.||..|+++|+.+.. +. .++.|..+++++++.++..++.+|.
T Consensus 57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999999999999999999998743 32 3667778999999999999888774
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.30 E-value=7.7e-08 Score=74.24 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=86.9
Q ss_pred cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHH
Q 009700 252 FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRL 331 (528)
Q Consensus 252 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 331 (528)
.++|+.|+..++++|+.+.. ..++.|+..|.++++.++..|+++|+++.. .+.++.|
T Consensus 2 ~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L 58 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPL 58 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHH
Confidence 45667777788888776532 246778899999999999999999997653 1346789
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHH
Q 009700 332 YQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAIS 394 (528)
Q Consensus 332 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 394 (528)
..+|.++ ++.||..|+++|+.+. ++ +.++.|..++.++++.+|..|+.+|.
T Consensus 59 ~~~l~d~-~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 59 IKLLEDD-SGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHC-CTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred Hhhhccc-hhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999988 9999999999999883 22 35778888999999999999998874
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0025 Score=56.16 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=148.3
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH----HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC----RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~----~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.+...+.+..|+..|..-+-+.|..+..+++++....... .+.+... ...+..++....++++.-.+...|...
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc 141 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC 141 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence 3445677888888898888999999999999998554332 2444432 244444444445677777777788877
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcCCChhhHHHHH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al 305 (528)
++...-.........+-.+...+..++=++..+|..++..+..........++.. .++..+..+|.+++.-++..++
T Consensus 142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl 221 (330)
T d1upka_ 142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 221 (330)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence 7764333333445556667778888899999999999998877766555555554 3677788899999999999999
Q ss_pred HHHhHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 306 RTVGNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 306 ~~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..||.+...... ....+-+..-+..++.+|++. +..++-+|..+.--+.+
T Consensus 222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence 999999854332 334455567788999999998 99999999999888877
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.02 Score=50.26 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=146.2
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc----hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT----QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
+.+...+++..|+..|..-+...+..+..+++++...... ..+++... -+.+..++....++++--.+...|..
T Consensus 63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE 140 (330)
T d1upka_ 63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE 140 (330)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence 4566678899999999999999999999999999865432 22344432 23333344333255665666666666
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--CChHHHHhhcCCCChHHHHH
Q 009700 354 ITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--GCIKPLCDLLVCPDPRIVTV 431 (528)
Q Consensus 354 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~ll~~~~~~~~~~ 431 (528)
++. .+...+.++....+..+.+.+..++.++...|..++..+......-...++..+ .++..+..+|.+++.-++.+
T Consensus 141 cik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq 219 (330)
T d1upka_ 141 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 219 (330)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence 654 566777888888899999999999999999999999988875422233343332 45677788999999999999
Q ss_pred HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 432 CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 432 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
++..|..++....... .....+.+..-+..+..|..+++..|+-.|..+..-|
T Consensus 220 SlKLLgelLldr~N~~--------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvF 272 (330)
T d1upka_ 220 SLKLLGELLLDRHNFT--------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF 272 (330)
T ss_dssp HHHHHHHHHHSGGGHH--------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHH--------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhh
Confidence 9999999997654322 2344555556677888888898898888777776543
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.015 Score=61.26 Aligned_cols=299 Identities=11% Similarity=0.068 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh----C--CCCHHHHHHHHHHHHHhhCCChhHHHHHHhc----C-
Q 009700 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL----G--SASDDVREQAVWALGNVAGDSPSCRDLVLSH----G- 200 (528)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~----g- 200 (528)
.+..|..++..++...++..... +.+.+...+ . +.+...++.++.+++.++............. .
T Consensus 377 ~r~~a~~ll~~l~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 452 (959)
T d1wa5c_ 377 RRRACTDFLKELKEKNEVLVTNI----FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (959)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred HHHHHHHHHHHHHHhccccchHH----HHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence 45556666666666333322211 122222222 2 2567888999999988864321100000000 0
Q ss_pred ---ChHHHHHhhc--cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-
Q 009700 201 ---ALMPLLAQLN--EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN- 274 (528)
Q Consensus 201 ---~i~~Ll~ll~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~- 274 (528)
....+...+. ......++..++|+++.++.... ......+++.++.+|.+++..++..|++++..++....
T Consensus 453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~ 529 (959)
T d1wa5c_ 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (959)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence 1111222221 23356788899999999986532 23457889999999999999999999999998875321
Q ss_pred ----------HHHHHHHHhCcHHHHHHHhcCCChh-----hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh----
Q 009700 275 ----------DKIQAVIEAGVCPRLVELLLHSSTT-----VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL---- 335 (528)
Q Consensus 275 ----------~~~~~~~~~~~l~~L~~lL~~~~~~-----v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---- 335 (528)
+.....+. .++..++..+...... ....++.+++.++............ .+++.+...+
T Consensus 530 ~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~ 607 (959)
T d1wa5c_ 530 NTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMA 607 (959)
T ss_dssp SSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHT
T ss_pred cccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 11111111 1445555555443221 1234666666665433222211111 2333444433
Q ss_pred cccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC---CHHHHHHHHHC
Q 009700 336 TQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG---TREQIQFLVSQ 411 (528)
Q Consensus 336 ~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~ 411 (528)
.++.++.....+..+++.+... +++....+ ...++|.+...+..........+...+..+.... ++...
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------ 680 (959)
T d1wa5c_ 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK------ 680 (959)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG------
T ss_pred cCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH------
Confidence 3332556677777778877652 34333333 3457888888887776666666666665554322 11111
Q ss_pred CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 412 GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
..++.+..............+...+.+++..++..
T Consensus 681 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 715 (959)
T d1wa5c_ 681 PLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSI 715 (959)
T ss_dssp GGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHh
Confidence 12333333222233334556667777777766543
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.81 E-value=0.00058 Score=58.78 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=30.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
.+..|..+++++++.||..+++.|+ ...+..++ .+++..++..+...
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~-~D~d~~VR~~aa~~ 113 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADR 113 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHh-cCCChhHHHHHHhc
Confidence 3567778888888999988875432 13344444 56666676666543
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.035 Score=58.25 Aligned_cols=181 Identities=10% Similarity=0.095 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH--------HHHHHh--c
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC--------RDLVLS--H 199 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~--------~~~~~~--~ 199 (528)
+.++..++|+++..+..... ..+ ..+++.++.+|.+++..++..|++++..++...... .+.+.. .
T Consensus 472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (959)
T d1wa5c_ 472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (959)
T ss_dssp HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence 67999999999998873221 111 246789999999999999999999999998532210 000000 0
Q ss_pred CChHHHHHhhccch----hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc----C-CCHHHHHHHHHHHHhhc
Q 009700 200 GALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF----S-SDEEVLTDACWALSYLS 270 (528)
Q Consensus 200 g~i~~Ll~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~l~~l~ 270 (528)
..+..++..+.... .......++.++..+..............+++.+...+. + .++.....+..+++.+.
T Consensus 548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~ 627 (959)
T d1wa5c_ 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (959)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 12333444432211 111122344455444433222223334445555554432 2 24566666777777665
Q ss_pred cCC-hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 271 DGT-NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 271 ~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
... ++....+. ..++|.+...+..........++..++.+....
T Consensus 628 ~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 672 (959)
T d1wa5c_ 628 NYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (959)
T ss_dssp HTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence 432 33333333 347788888888777777777887777776544
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.45 E-value=0.29 Score=43.97 Aligned_cols=207 Identities=16% Similarity=0.165 Sum_probs=124.1
Q ss_pred ChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc---hhhHHHHHHHHHhhhh----c
Q 009700 159 AVPKFVQLLGSAS--DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH---SKLSMLRNATWTLSNF----C 229 (528)
Q Consensus 159 ~i~~L~~lL~~~~--~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~---~~~~~~~~a~~~L~~l----~ 229 (528)
++..+..++.+.. ..-....++.+..... |. .+ .+..+..++... .++.+...+..+++++ |
T Consensus 89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c 159 (336)
T d1lsha1 89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC 159 (336)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence 4455666665533 3333344444444332 21 12 244455555221 2455656666555544 4
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-------CChhhHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-------SSTTVLV 302 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~ 302 (528)
...+......+..+...+.+.....+.+-..-++.+|+|+.. + +.++.+..++.. ....++.
T Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~ 228 (336)
T d1lsha1 160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA 228 (336)
T ss_dssp TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence 444444444555666667777777888877888999999863 2 246667777643 2456899
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc-c
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ-H 380 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~ 380 (528)
.|++++.+++...+...+ +.+.+++.+. .++++|..|+.++... .-+.. .+..+...+. .
T Consensus 229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E 290 (336)
T d1lsha1 229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE 290 (336)
T ss_dssp HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence 999999999876554332 3455555443 3788999998888664 22232 2334445454 4
Q ss_pred CChHHHHHHHHHHHHhcCCCCHH
Q 009700 381 AEFEVKKEASWAISNATSGGTRE 403 (528)
Q Consensus 381 ~~~~v~~~a~~aL~nl~~~~~~~ 403 (528)
++..|...+...|.+++....|.
T Consensus 291 ~~~QV~sfv~S~l~~la~s~~P~ 313 (336)
T d1lsha1 291 PNLQVASFVYSQMRSLSRSSNPE 313 (336)
T ss_dssp SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHHHHhCCCcc
Confidence 57888888888898988866553
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.89 E-value=0.25 Score=44.40 Aligned_cols=168 Identities=13% Similarity=0.181 Sum_probs=97.0
Q ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHhhcc----CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 243 ALAALQHLIFS----SDEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 243 ~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
.+..+..++.+ .++.+...+.-+++.++. ..+.....+++ .+...+.+.....+..-...++++|||+..
T Consensus 124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 201 (336)
T d1lsha1 124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 201 (336)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHHHhhcccchHHHHHHHHHHhccCC-
Confidence 44455555553 467777777777777653 11111011111 123334444556666777788999999864
Q ss_pred CcchhHHHhccCChHHHHHHhccc------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHH
Q 009700 315 DDTQTQCVIDNQGLPRLYQLLTQN------YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVK 386 (528)
Q Consensus 315 ~~~~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 386 (528)
+ ..++.+..++... ....+|..|.|++.+++...+..++ +.++.++.+. ++++|
T Consensus 202 -p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvR 263 (336)
T d1lsha1 202 -P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELR 263 (336)
T ss_dssp -G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHH
T ss_pred -H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHH
Confidence 2 2345666666431 1567999999999999887665543 3344554443 68999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHH
Q 009700 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~ 441 (528)
..|+.+|...- .+... +..+...+. .++..+..-+...|.++.+
T Consensus 264 iaA~~~lm~t~--P~~~~---------l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 264 IRSCIVFFESK--PSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp HHHHHHHHHTC--CCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--CCHHH---------HHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 99988886641 12232 233333343 3455565555555555554
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.79 E-value=0.0049 Score=52.79 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWA 139 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~ 139 (528)
+..|..++++++ +.|+..|+..
T Consensus 68 ~~~L~~Ll~D~d-~~VR~~AA~~ 89 (233)
T d1lrva_ 68 VEALTPLIRDSD-EVVRRAVAYR 89 (233)
T ss_dssp GGGGGGGTTCSS-HHHHHHHHTT
T ss_pred HHHHHHHhcCCC-HHHHHHHHHH
Confidence 345566777776 7888777654
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.52 Score=42.38 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=99.9
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----C------CChHHHHHHHHHHHHHh
Q 009700 76 SMVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----H------DLPQLQFEAAWALTNIA 144 (528)
Q Consensus 76 ~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~ 144 (528)
..+..|++.- .+.....+..|+--+...+..=++.+ ..+++..|+.+|.. . .+...+..++.||..+.
T Consensus 6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm 84 (343)
T d2bnxa1 6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 84 (343)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence 3455555432 23344556666655555311123455 34556667766631 1 12568999999999999
Q ss_pred cCChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhHHHH----------HHhcCChHHHHHhhcc
Q 009700 145 SGTSEHTRVVI-EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS--PSCRDL----------VLSHGALMPLLAQLNE 211 (528)
Q Consensus 145 ~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~--~~~~~~----------~~~~g~i~~Ll~ll~~ 211 (528)
. +......++ ..+++..+...|.++.+.++..|+..|..+|... +..... .-+.+-..+++..+..
T Consensus 85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~ 163 (343)
T d2bnxa1 85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 163 (343)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence 8 555555555 4678999999999999999999999999998532 222222 2234556777777755
Q ss_pred chhhHHHHHHHHHhhhhcCCCCC
Q 009700 212 HSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 212 ~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..+.+....++..+-.+....+.
T Consensus 164 ~~~~ey~~a~m~lIN~li~~~~d 186 (343)
T d2bnxa1 164 GTSIALKVGCLQLINALITPAEE 186 (343)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred cccHHHHHHHHHHHHHHHcCccc
Confidence 55667777777777777766443
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.72 E-value=0.31 Score=43.89 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC-----HHH------HHHH
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT-----REQ------IQFL 408 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~------~~~l 408 (528)
.....++..++..+.. +......++ ..+.+..+...+.++.+.++..|...|..++.... ... ....
T Consensus 70 ~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~ 148 (343)
T d2bnxa1 70 SRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 148 (343)
T ss_dssp HHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 4577788889988866 555666666 56789999999999999999999999988875321 111 1223
Q ss_pred HHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHH
Q 009700 409 VSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 409 ~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
.+.+-..++++.+... +.+....++..+..++...+.... -..+...|..+|..+.+..|....++++...
T Consensus 149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~-----R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q 220 (343)
T d2bnxa1 149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQ 220 (343)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH-----HHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence 3456688888888764 567777777777777765554332 2336777889999999999999999887544
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=1.9 Score=32.90 Aligned_cols=75 Identities=9% Similarity=-0.094 Sum_probs=61.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.++++.++..|+..|-.++.+|.+.+...+.+.+++..|..++.. .+..+...++..+.......
T Consensus 46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f 125 (145)
T d1ujka_ 46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 125 (145)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 345566778899999999999999999999988888888888999999998863 45678888888888776554
Q ss_pred h
Q 009700 444 E 444 (528)
Q Consensus 444 ~ 444 (528)
+
T Consensus 126 p 126 (145)
T d1ujka_ 126 P 126 (145)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=1.5 Score=38.90 Aligned_cols=186 Identities=11% Similarity=0.048 Sum_probs=95.4
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
+....+..|+.++.++++.=|+....+|.++-+.....|..+.. .+...+.+.+...........+++.++.+..+...
T Consensus 130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~ 208 (343)
T d2jaka1 130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 208 (343)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence 33345778889999999999999999999998777777766543 23445555554444444556667777777666433
Q ss_pred C-ChhhhHHHHHHHHHHhcCCCHH-HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHh
Q 009700 235 A-PFDQVRPALAALQHLIFSSDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVG 309 (528)
Q Consensus 235 ~-~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~ 309 (528)
+ ......-....++.+.+...-. .-.....++......++..... .+-.++++ .+..-...-+.-+.
T Consensus 209 plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~--------~i~~llk~WP~t~~~Kev~FL~el~ 280 (343)
T d2jaka1 209 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFLNELE 280 (343)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH--------HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 2 2222233334444544433211 1112222222222222322211 11222332 33333444445555
Q ss_pred HhhcCCcc-hhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 310 NIVTGDDT-QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 310 ~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
.+....+. ..+.+ -..++..+...+.++ +..|-+.|+...
T Consensus 281 ~il~~~~~~~f~~~-~~~lf~~la~ci~S~-h~qVAErAl~~w 321 (343)
T d2jaka1 281 EILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW 321 (343)
T ss_dssp HHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHH-HHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 55543332 11111 123455566666666 666666665443
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=1.2 Score=34.07 Aligned_cols=74 Identities=9% Similarity=-0.124 Sum_probs=59.9
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.++++.++..|+..|-.++.++.+.+...+.+.+++..|..++.. .++.+...++..+.......
T Consensus 39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f 118 (143)
T d1mhqa_ 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (143)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344566668889999999999999999999888888888888899999998863 46778888888887776544
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.88 E-value=2 Score=32.81 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=59.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-----CChHHHHHHHHHHHHHhcC
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-----DLPQLQFEAAWALTNIASG 146 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~v~~~a~~~L~~l~~~ 146 (528)
+++..+.+.|+++++.++..|+..|..+....+......+...+++..|+.++... .+..++..++..+...+..
T Consensus 45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~ 124 (145)
T d1ujka_ 45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 124 (145)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999998888775445566777888899999998631 2368998888888877663
Q ss_pred C
Q 009700 147 T 147 (528)
Q Consensus 147 ~ 147 (528)
.
T Consensus 125 f 125 (145)
T d1ujka_ 125 L 125 (145)
T ss_dssp C
T ss_pred C
Confidence 3
|