Citrus Sinensis ID: 009712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHccccHHHHHHccccHHcccccccccHHccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHEEEccccccHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkiklssmpkesensdtpltevYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIaraddestgyvlpnrTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDtssnlkipnvgresvdgvdalvgttmphppaytqlkqeppkvgssvaeldrnglgsfahpgeaiasenkeathistlsssgqsrdlnackspsprVTEAAVQALkkpnrgfgallgnpkrkfdgekkdKEAMKLEQikssvnlpfhsifardeqlkpvdvmksepnkpdlpfpssfgsgeqtkpiieesnrvtvvsqseepapaarpdtediitLEDDIDEEEqnlgnletasapgedgsagsalemgkqdetmslsdlSTSFQECFHsannnrkpgkperseepsgflqlkpfdFEAARKQIEFGedakeksagvdgnkrkpvnsgdkkkvsAVDQaqkddgtkelsqgrrrsafpatgnrsatfr
Flexible Loop (DISEMBL)
mkiklssmpkesensdtpltevyKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAraddestgyvlpnrtlieiakqlptTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLvldtssnlkipnvgrESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIStlsssgqsrdlnACKSPSPRVTEAAVQalkkpnrgfgallgnpkrkfdgekKDKEAMKLEqikssvnlpfhsIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESnrvtvvsqseepapaarpdteDIITLEDDIDEEEQNLGNletasapgedgSAGSALEMGKQDETMSLSDLSTSFQECFHSannnrkpgkperseepsgflqLKPFDFEAARKQIEFgedakeksagvdgnkrkpvnsgdkkkvsavdqaqkddgtkelsqgrrrsafpatgnrsatfr
Low Complexity Region (SEG)
MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPdtediitleddideeeQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
Disordered region (IsUnstruct)
********************EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK**************VLVLD********************L***************************************************************************************************************************F**I***************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MKIK***************TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA***************YMGPVLSIIKNSMQ************************************************************************************************************************************************************************************************************************************************************************************************************************************DFEA*********************************************************************
Disordered Region (DISEMBL)
*****************PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE**********VLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQL**********VAELDRNGLGSFAHPGEAIASENKE*****************************AVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNR***************PDTEDIITLEDDIDEEEQNLGNLETAS**********ALEMGKQDETMSLSDLSTSFQECFHSAN**************SGFLQLKPFDFEAARKQIEFGE*********************************************RSAFP**********
Disordered Region (DISPRO)
*KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA**F********E*********************************************************************************************************************************************************************************************************************************E*****************************************************************************FLQLKPFDFEAARKQIEF**************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIxxxxxxxxxxxxxxxxxxxxxRMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDxxxxxxxxxxxxxxxxxxxxxSAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	528	2.2.26 [Sep-21-2011]
P56960	887	Exosome component 10 OS=M	yes	no	0.151	0.090	0.45	3e-14
Q01780	885	Exosome component 10 OS=H	yes	no	0.151	0.090	0.45	5e-14
Q10146	777	Exosome complex exonuclea	yes	no	0.217	0.148	0.285	1e-06
Q12149	733	Exosome complex exonuclea	yes	no	0.196	0.141	0.283	0.0003

>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 52/80 (65%)

Query: 19  LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
           L  V++RS D+C + + K + ++ SYL +Y  Q   LN+QQL     L  WRD  AR +D
Sbjct: 466 LQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARRED 525

Query: 79  ESTGYVLPNRTLIEIAKQLP 98
           ES GYVLPN  +++IA++LP
Sbjct: 526 ESYGYVLPNHMMLKIAEELP 545

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. EXOSC10 has 3'-5' exonuclease activity (By similarity). EXOSC10 is required for nucleolar localization of C1D and probably mediates the association of SKIV2L2, C1D and MPP6 wth the RNA exosome involved in the maturation of 5.8S rRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -

>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%)

Query: 19  LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
           L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL     L  WRD  AR +D
Sbjct: 466 LQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARRED 525

Query: 79  ESTGYVLPNRTLIEIAKQLP 98
           ES GYVLPN  +++IA++LP
Sbjct: 526 ESYGYVLPNHMMLKIAEELP 545

Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. EXOSC10 has 3'-5' exonuclease activity (By similarity). EXOSC10 is required for nucleolar localization of C1D and probably mediates the association of SKIV2L2, C1D and MPP6 wth the RNA exosome involved in the maturation of 5.8S rRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 8   MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------------- 54
           + K +E  +  +  V+  S  +  + YE E      Y  IYGL   G             
Sbjct: 386 ISKSAERKENLMQSVFNSSKQISLRKYELE-----PYDPIYGLGTDGWRNVLTKFGSSKI 440

Query: 55  LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 114
           +  + L +   L +WRD +AR +DES  YVLPNR LI IA   P  AA +  + K     
Sbjct: 441 IGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPI 500

Query: 115 IERYMGPVLSIIK 127
              Y+  ++ +++
Sbjct: 501 ARMYVEDIVKVVQ 513

Nuclear-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. RRP6 has 3'-5' exonuclease activity which is not modulated upon association with Exo-9 suggesting that the complex inner RNA-binding path is not used to access its active site.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
            +V  L +WRD+IAR DDES  +V+PN+ L  +    PT    +  L      ++ +   
Sbjct: 440 VLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAK 499

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 171
            + ++I+++++N  N         EE   + S ET+   ++L+T S  +I +V
Sbjct: 500 LLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545

Nuclear-specific catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. RRP6 has 3'-5' exonuclease activity which is not modulated upon association with Exo-9 suggesting that the complex inner RNA-binding path is not used to access its active site.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
359481017	931	PREDICTED: exosome component 10-like [Vi	0.946	0.537	0.469	1e-110
296085897	901	unnamed protein product [Vitis vinifera]	0.946	0.554	0.469	1e-110
356565747	889	PREDICTED: exosome component 10-like [Gl	0.878	0.521	0.466	1e-107
255569470	857	3'-5' exonuclease, putative [Ricinus com	0.842	0.519	0.441	1e-106
224123860	858	predicted protein [Populus trichocarpa]	0.854	0.525	0.467	1e-105
449462768	936	PREDICTED: exosome component 10-like [Cu	0.929	0.524	0.455	1e-104
449522510	935	PREDICTED: exosome component 10-like [Cu	0.929	0.525	0.447	1e-103
356514039	877	PREDICTED: exosome component 10-like [Gl	0.861	0.518	0.424	2e-99
224144831	855	predicted protein [Populus trichocarpa]	0.850	0.525	0.450	4e-99
297805136	867	hypothetical protein ARALYDRAFT_355577 [	0.823	0.501	0.392	2e-83

>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 258/550 (46%), Positives = 342/550 (62%), Gaps = 50/550 (9%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M+ +L SM  E ENS+  L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA  NAQQL
Sbjct: 410 MRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQL 468

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           A+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER +G
Sbjct: 469 AIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNLG 528

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVGR 173
           PV+SII++S+ NAA FE  AQ LKE  +  ASE+        E L  ++ ++++  +   
Sbjct: 529 PVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADARA 588

Query: 174 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASENKEA 232
           ES D  + + G        +   K+   + GS++      G G  +  PGE+   ++++ 
Sbjct: 589 ESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEKD 648

Query: 233 THI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKF 283
           + I      T +SSGQSRD +     S S +VTE  VQ LKKPNR FG+LLGN   KRK 
Sbjct: 649 SFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRKL 708

Query: 284 DGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQT 343
           + + K KE +KLEQIKSSVNLPFHS               S  N+ +L           +
Sbjct: 709 NSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL-----------S 743

Query: 344 KPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---GE 398
           K   EE  +V     SEEP   PA+R D E+II  E++   +E   GN   A+      E
Sbjct: 744 KLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGKE 803

Query: 399 DGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFE 458
           D   GS LEM + +E MSL+DLS+ FQ+C  S N  RK  + E+S+E +G LQ+KPFD+E
Sbjct: 804 DNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDYE 863

Query: 459 AARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFP 518
           AARKQ+ FGED  E+S G +G +   V+S  KK+     + Q +D T + +QGRRR AFP
Sbjct: 864 AARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAFP 921

Query: 519 ATGNRSATFR 528
           ATGNRS TFR
Sbjct: 922 ATGNRSVTFR 931

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 258/550 (46%), Positives = 342/550 (62%), Gaps = 50/550 (9%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M+ +L SM  E ENS+  L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA  NAQQL
Sbjct: 380 MRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQL 438

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           A+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER +G
Sbjct: 439 AIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNLG 498

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVGR 173
           PV+SII++S+ NAA FE  AQ LKE  +  ASE+        E L  ++ ++++  +   
Sbjct: 499 PVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADARA 558

Query: 174 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASENKEA 232
           ES D  + + G        +   K+   + GS++      G G  +  PGE+   ++++ 
Sbjct: 559 ESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEKD 618

Query: 233 THI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKF 283
           + I      T +SSGQSRD +     S S +VTE  VQ LKKPNR FG+LLGN   KRK 
Sbjct: 619 SFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRKL 678

Query: 284 DGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQT 343
           + + K KE +KLEQIKSSVNLPFHS               S  N+ +L           +
Sbjct: 679 NSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL-----------S 713

Query: 344 KPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---GE 398
           K   EE  +V     SEEP   PA+R D E+II  E++   +E   GN   A+      E
Sbjct: 714 KLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGKE 773

Query: 399 DGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFE 458
           D   GS LEM + +E MSL+DLS+ FQ+C  S N  RK  + E+S+E +G LQ+KPFD+E
Sbjct: 774 DNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDYE 833

Query: 459 AARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFP 518
           AARKQ+ FGED  E+S G +G +   V+S  KK+     + Q +D T + +QGRRR AFP
Sbjct: 834 AARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAFP 891

Query: 519 ATGNRSATFR 528
           ATGNRS TFR
Sbjct: 892 ATGNRSVTFR 901

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 249/534 (46%), Positives = 326/534 (61%), Gaps = 70/534 (13%)

Query: 1   MKIKLSSMPKESENS---DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 57
           M+IKL ++ KESE+S   DTPL EVYKRSYDVC QLYEKELL+ENSYLHIYGLQGAG NA
Sbjct: 420 MRIKLFALSKESESSESSDTPLVEVYKRSYDVCIQLYEKELLTENSYLHIYGLQGAGFNA 479

Query: 58  QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 117
           QQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRRL+KSKH Y+E 
Sbjct: 480 QQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPYVEH 539

Query: 118 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 177
            +  V+SII++S+QNAA+FE  AQ+LKE +   AS+   V    T      P+  R S +
Sbjct: 540 NLDTVVSIIRHSIQNAASFEEAAQQLKEAQAVTASDVVPV----TDGTEDPPSHTRHSKE 595

Query: 178 GVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST 237
                  T++P       L  EPPK   ++AE                            
Sbjct: 596 SSQHQ-ATSVPIKIKSNSLIFEPPKDSLTIAE---------------------------- 626

Query: 238 LSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMKL 295
                Q+RD N     + +   AAVQ LKKP   FGALLG+   KRK  G  K KE +KL
Sbjct: 627 -----QNRDANVGALSTAKGNGAAVQVLKKPTGAFGALLGSSASKRKL-GPGKGKEEIKL 680

Query: 296 EQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTV 355
           EQI+SSV+LPFHS     E        KSEP + ++P  +S  S E  KP+ +      V
Sbjct: 681 EQIRSSVSLPFHSFLGSSE--------KSEPTE-EIPSVASEMS-EPQKPVSD------V 724

Query: 356 VSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETM 415
           VS S           ++II LE D   ++    NLE ++   E  S  S      +DE +
Sbjct: 725 VSASP---------VDEIIMLESDTGAKDMEQNNLENSNEHREKDSVVSTSGKEDEDEPV 775

Query: 416 SLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSA 475
           SLS+LS++ ++CFHS + N K  +P+++E+PSG +QLKPFD+EAARK ++FGE  K  S+
Sbjct: 776 SLSELSSNLKKCFHSNDQNNKIRQPKKTEQPSGLVQLKPFDYEAARKHVKFGEHKKHASS 835

Query: 476 -GVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 528
            G DG+     +SG KK+ S   Q Q  D +K+L QGRRR AFPA+GNRS+TFR
Sbjct: 836 KGSDGHMEVVEDSGSKKQRSTTGQGQASDLSKQLPQGRRRQAFPASGNRSSTFR 889

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/548 (44%), Positives = 313/548 (57%), Gaps = 103/548 (18%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M+I L SMP E+ENS++PL EVYKRSYDVC QLYEKELL+E+SYLHIYGLQ AG NAQQL
Sbjct: 393 MRIMLLSMPNETENSNSPLAEVYKRSYDVCMQLYEKELLTESSYLHIYGLQTAGFNAQQL 452

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           A+VAGLCEWRDVIAR +DESTG++LPN+TL+EIAKQ+P T  KLRR LKSKH YIER +G
Sbjct: 453 AIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMPVTPQKLRRALKSKHPYIERNLG 512

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERME-----------VASEETEVLV---LDTSSNL 166
            V+++++++MQNAA FE  AQ+LKE  +E           + + +  V V   +D  +NL
Sbjct: 513 SVVNVVRHAMQNAAEFEAAAQRLKEGCIETDNLSSIFAFFMKASQDNVEVNDDMDMDTNL 572

Query: 167 KIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIA 226
           +    G E++    A+ G+         QLK+EP K   ++                   
Sbjct: 573 ETAEAGTETICDGSAVEGSENALQTDSPQLKKEPLKAALAI------------------- 613

Query: 227 SENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP---KRKF 283
                                           +A VQ LKKP   FGALLG     KR+F
Sbjct: 614 --------------------------------DATVQVLKKPAGAFGALLGKSSAGKRRF 641

Query: 284 DGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQT 343
           D  KKDK+ +KL++I+SSV+LPFHS   R E                   P+        
Sbjct: 642 DMAKKDKDEIKLDKIRSSVSLPFHSFLGRKE-------------------PA-------- 674

Query: 344 KPIIEESNRVTVVSQSEE--PAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGS 401
           KP  EE N VT   + EE    PA     EDII L D+ D   Q   + +T        S
Sbjct: 675 KPAAEEPNLVTETPRPEESFAVPATGSSLEDIILLGDNSDVVVQENVDSDTKDV---SKS 731

Query: 402 AGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP-ERSEEPSGFLQLKPFDFEAA 460
            G   E  ++ E  SLSDLSTSFQ+CF S N N+      ++S++P+G LQLKPFD+ AA
Sbjct: 732 VGCESETDEEGEPASLSDLSTSFQKCFQSNNENKTNENNMQKSQDPTGLLQLKPFDYAAA 791

Query: 461 RKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPAT 520
           RK++ FGE++K  S G D ++   V   D++K S     +KDDGT++  QG+RR AFPAT
Sbjct: 792 RKEVIFGEESKAASGGKDQSRNDGVK--DRRKNSVGGGVEKDDGTRDFPQGKRRQAFPAT 849

Query: 521 GNRSATFR 528
           GNRSATFR
Sbjct: 850 GNRSATFR 857

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa] gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 252/539 (46%), Positives = 311/539 (57%), Gaps = 88/539 (16%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M+  L S P ++EN+D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL  AG NAQQL
Sbjct: 397 MRALLLSKPIDNENADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFNAQQL 456

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           A+VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLR+LLKSKHSYIER++ 
Sbjct: 457 AIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIERHLS 516

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVD 180
            V+SII++SMQ +A FE   Q LKE  ME+AS+E E    D S    IP  G     GV 
Sbjct: 517 SVVSIIRHSMQTSAAFEAAVQHLKERHMEIASQE-ETEANDGSEARSIPG-GNGMNSGVA 574

Query: 181 ALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSS 240
           A   T+        QL++   K GSS+ EL R G GS              A H      
Sbjct: 575 ACHETS-------AQLEKGLLKQGSSIVELGRGGQGS-------------SAKH------ 608

Query: 241 SGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMKLEQI 298
                              A VQ LKKP   FGALLG    KRK D +KK KE +KLE+I
Sbjct: 609 ------------------HATVQVLKKPTGAFGALLGGAVAKRKLDTDKKVKEKIKLEKI 650

Query: 299 KSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQ 358
           +SSVNLPFHS                             G  E  K ++EE   V+ +S 
Sbjct: 651 RSSVNLPFHSF---------------------------MGINEPPKVVVEEPIGVSEISH 683

Query: 359 SEEP--APAARPDTEDIITLEDDIDEE------EQNLGNLETASAPGEDGSAGSALEMGK 410
            EE    PA     +DII L++D D E      E +  + +T +A G+D S+GSALE   
Sbjct: 684 PEESLDVPATGSSLQDIILLDNDSDMEQNTHIAEPDRDDSKTTNANGDDKSSGSALETDG 743

Query: 411 QDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGED- 469
           + E +SL+DLS SFQ+CF S N N+K  +  +S EPSG L+LKPFD+  A +    GED 
Sbjct: 744 E-EPVSLADLSMSFQKCFPSGNQNKKTAEVMKSGEPSGGLKLKPFDYTTALRS---GEDP 799

Query: 470 AKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 528
           A     G   N+R  ++S    K S   + QKDD T E  QGRRR AFPATGNRSATFR
Sbjct: 800 AGRLKVGSAKNQRGVLDSVGTIKSSPGAKMQKDDETGEYRQGRRRQAFPATGNRSATFR 858

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/560 (45%), Positives = 327/560 (58%), Gaps = 69/560 (12%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M++KL+SMP+ESE SD PL EVYKRS+DVC  LYEKELL+E+SYL++YGLQG+G +AQQL
Sbjct: 414 MRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQGSGFDAQQL 473

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           AV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T  KLRRLLKSKH YIER + 
Sbjct: 474 AVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKHPYIERNLA 533

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVGR 173
            +++II++SM N+  FE  AQ+LKE R E ASEE        E  + DT  N+K   V  
Sbjct: 534 SIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTILNMKNSAVDN 593

Query: 174 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN---- 229
              D V +                   P   S VA L+R G   F  PG+ +  ++    
Sbjct: 594 TPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGKCVKVDHSLHP 632

Query: 230 --KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKF 283
               + HIS +  ++S  S+  N  K P   VT   +   KK NRG G+LLGN  PKRK 
Sbjct: 633 VLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSLLGNSAPKRKL 692

Query: 284 DGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKPDLPFPSSFGS 339
           D +KKDKE  KL++I+SSV LPFHS     EQLK    P  V   +    +LP   S  S
Sbjct: 693 DIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNSELPAAESAKS 752

Query: 340 GEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNL--------- 390
                P +              P P   P T++II LEDD D+  ++             
Sbjct: 753 SNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDEDEDEELRAVD 797

Query: 391 ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGF 449
           E    P   G SA S LE+   DE MSLS+LS+SFQ+C +S       G+ +     S F
Sbjct: 798 EATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGETDNPGNQSDF 857

Query: 450 LQLKPFDFEAARKQIEFGEDAKEKSAGV-DGNKRKPVNSGDKKKVSAVDQAQKDDGTKEL 508
           LQ+KPFD+EAARK++ FGED +E      D + +   N+G K  +  +D+ QK+ GT EL
Sbjct: 858 LQIKPFDYEAARKEVVFGEDLEEDLEPENDKDPKASKNAGAKLDL-GLDRVQKNSGTVEL 916

Query: 509 SQGRRRSAFPATGNRSATFR 528
            QG+RR AFPATGNRSATFR
Sbjct: 917 PQGKRRHAFPATGNRSATFR 936

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/559 (44%), Positives = 323/559 (57%), Gaps = 68/559 (12%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M++KL+SMP+ESE SD PL EVYKRS+DVC  LYEKELL+E+SYL++YGLQG+G +AQQL
Sbjct: 414 MRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQGSGFDAQQL 473

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           AV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T  KLRRLLKSKH YIER + 
Sbjct: 474 AVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKHPYIERNLA 533

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVGR 173
            +++II++SM N+  FE  AQ+LKE R E ASEE        E  + DT  N+K   V  
Sbjct: 534 SIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTILNMKNSAVDN 593

Query: 174 ESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN---- 229
              D V +                   P   S VA L+R G   F  PG+ +  ++    
Sbjct: 594 TPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGKCVKVDHSLHP 632

Query: 230 --KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKF 283
               + HIS +  ++S  S+  N  K P   VT   +   KK NRG G+LLGN  PKRK 
Sbjct: 633 VLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSLLGNSAPKRKL 692

Query: 284 DGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKPDLPFPSSFGS 339
           D +KKDKE  KL++I+SSV LPFHS     EQLK    P  V   +    +LP   S  S
Sbjct: 693 DIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNSELPAAESAKS 752

Query: 340 GEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNL--------- 390
                P +              P P   P T++II LEDD D+  ++             
Sbjct: 753 SNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDEDEDEELRAVD 797

Query: 391 ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGF 449
           E    P   G SA S LE+   DE MSLS+LS+SFQ+C +S       G+ +     S F
Sbjct: 798 EATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGETDNPGNQSDF 857

Query: 450 LQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELS 509
           LQ+KPFD+EAARK +   +  ++     D + +   N+G K  +  +D+ QK+ GT EL 
Sbjct: 858 LQIKPFDYEAARKVVFGEDLEEDLEPENDKDPKASKNAGAKLDL-GLDRVQKNSGTVELP 916

Query: 510 QGRRRSAFPATGNRSATFR 528
           QG+RR AFPATGNRSATFR
Sbjct: 917 QGKRRHAFPATGNRSATFR 935

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max]

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 227/535 (42%), Positives = 308/535 (57%), Gaps = 80/535 (14%)

Query: 1   MKIKLSSMPKESENS---DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 57
           M+I+L ++ KESE+S   DTP  EVYKRSYDVC QLYEKE L+ENSYLHIYGLQGAG NA
Sbjct: 416 MRIRLFALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLHIYGLQGAGFNA 475

Query: 58  QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 117
           QQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRRL+KSKH Y+E 
Sbjct: 476 QQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPYVEH 535

Query: 118 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 177
            +  V+SII++S+QN+A FE  AQ+LKE +   AS+     V+  +   + P    +   
Sbjct: 536 NLDTVVSIIRHSIQNSAAFEEAAQQLKEAQAGTASD-----VVPFTDGTEDPQSHTQDSK 590

Query: 178 GVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIST 237
                  T +P       L+ EPPK                                  +
Sbjct: 591 ESSNHQDTNVPINLKSNSLRSEPPK---------------------------------DS 617

Query: 238 LSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMKL 295
           L+ + Q+RD N     + +   A VQ LKKP   FGALLGN   KRK  G  K KE  KL
Sbjct: 618 LTIADQNRDANVGALSTTKGNGATVQVLKKPTGAFGALLGNSASKRKL-GPDKGKEDSKL 676

Query: 296 EQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTV 355
           EQI+SSV+LPFHS                             GS E+++P +E     + 
Sbjct: 677 EQIRSSVSLPFHSF---------------------------LGSSEKSEPTVETHTVASE 709

Query: 356 VSQSEEPAP--AARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDE 413
           + +S+ P     +    ++II LE     E     NLE++S   E  S  S      +DE
Sbjct: 710 MLESQRPVSDVVSVSPLDEIIMLESGTGAENMEQNNLESSSEHREKDSVVSISGKEDEDE 769

Query: 414 TMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEK 473
           ++SL +LS++F++CFHS + N K   P+++E+PSG + +KPFD+EAARK ++FGE  K  
Sbjct: 770 SVSLLELSSNFKKCFHSNDQNYKTRWPKKTEQPSGLVPMKPFDYEAARKHVKFGEHTKHA 829

Query: 474 SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 528
           S+    +  +  +SG KK+ S + Q Q       L QGRRR AFPA+GNRS+TFR
Sbjct: 830 SSKGSDSHMEVEDSGSKKQRSTIGQGQ-------LPQGRRRQAFPASGNRSSTFR 877

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa] gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 243/539 (45%), Positives = 305/539 (56%), Gaps = 90/539 (16%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M+  L +   +++N D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL  AG NAQQL
Sbjct: 396 MRALLLTKHSDNDNGDPPLVEVYKRSYDVCMQLYEKELFTENSYLNMYGLPNAGFNAQQL 455

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           A+VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLRRLLKSKHSYIER++ 
Sbjct: 456 AIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTPSKLRRLLKSKHSYIERHLS 515

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVD 180
            V+SII++SMQ +A FE   Q LKE  ME AS++      DT  N        +SV G +
Sbjct: 516 SVVSIIRHSMQTSAAFEAAVQHLKERLMETASQK------DTEVN---DGCEEKSVHGGN 566

Query: 181 ALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSS 240
            + G+         QLK+   K GSS+ EL + G  S              A H      
Sbjct: 567 GMNGSVAAE--TSMQLKRGLLKQGSSIVELGKGGHES-------------SAKH------ 605

Query: 241 SGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALL--GNPKRKFDGEKKDKEAMKLEQI 298
                              A VQ LKKP   FGALL     KRK   +KK  E +KLE+I
Sbjct: 606 ------------------HATVQILKKPTGAFGALLRGAAAKRKLGTDKKVGEEVKLEKI 647

Query: 299 KSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQ 358
           +SSVNLPFHS   R+E  KPV                        +PI+ E      +S 
Sbjct: 648 RSSVNLPFHSFMPRNEPPKPV----------------------VEEPIVSE------ISH 679

Query: 359 SEE--PAPAARPDTEDIITLEDDID-EEEQNLGNLET-----ASAPGEDGSAGSALEMGK 410
            EE    PA     +DII L+DD D E++  +G  E       +   +D S+G+ALE  K
Sbjct: 680 PEESLAVPATGSSLQDIIMLDDDSDMEQDTRIGEPERDDSKPTNVNRDDISSGTALETDK 739

Query: 411 QDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDA 470
            +E +SLSDLSTS Q+ F S+N NR+  + ++S E S  L+LKPFD+ AA   + FGE  
Sbjct: 740 VEEPVSLSDLSTSSQKRFQSSNQNRRTAEGKKSGESSSVLKLKPFDYTAA---LRFGEGP 796

Query: 471 KEK-SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 528
            EK   G D N+R    S  K K S     QKDD T E  +GRRR AFPA+GNRSATFR
Sbjct: 797 TEKLKVGNDKNQRDVRVSVGKIKSSPGAPVQKDDETGEFREGRRRQAFPASGNRSATFR 855

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 212/540 (39%), Positives = 289/540 (53%), Gaps = 105/540 (19%)

Query: 1   MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 60
           M+++L  M K+ E++D+PL +VYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA QL
Sbjct: 420 MRLELERMAKDDEHTDSPLLQVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQL 479

Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
           A+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P +  KLRR+LKSKH YIER + 
Sbjct: 480 AIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPVSVGKLRRMLKSKHPYIERNVD 539

Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVD 180
            V+S+I+ SMQN+A FE  A  LK                                   D
Sbjct: 540 SVVSVIRQSMQNSAAFESAALSLK-----------------------------------D 564

Query: 181 ALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSS 240
              GT M     +   K++   V  +   L  N     +   E+    N +A + +  S 
Sbjct: 565 VSPGTVMDKNIEHISEKKDMHAVDVASPSLKEN-----SSQLESTRDLNMDAANTNEGSG 619

Query: 241 SGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEKKDKEAMKLEQI 298
            G     +A  S + R++       KKP+ G GALLG+   K+K   ++K KE +KLEQI
Sbjct: 620 LGTGLFGSAKVSAAVRIS-------KKPSSGLGALLGSAASKKKSRTDEKVKEDVKLEQI 672

Query: 299 KSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQ 358
           +SSVNL FHS   +                     P S  + E T  +  +   +    Q
Sbjct: 673 RSSVNLSFHSFTEK--------------------VPDSKSTTETTPKVYGKPEEMFTTMQ 712

Query: 359 SEEPAPAARPDTEDIIT-LEDDIDEEEQNLGNLETASAPGEDGSA---------GSALEM 408
                  A    ED +T L+DD +E  + +G     S     GS          G   E+
Sbjct: 713 -------ASVSKEDGVTELKDDSEEASEIVGTSGRVSESKVFGSKTGDIILLENGDEKEV 765

Query: 409 GKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGE 468
             +DE MSLS+LST+FQ+CF S        K  ++++ + FL ++PFD+EAARK+++FGE
Sbjct: 766 EAEDEPMSLSELSTNFQKCFKSMK------KSNKAQKQTEFLNIEPFDYEAARKEVKFGE 819

Query: 469 DAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 528
             K +        +K V +G KKK S  +Q+       E  QG+RR AFPA+GNRSATF+
Sbjct: 820 GHKGRQG------KKEVAAGQKKKGSGPEQS-------EFGQGKRRQAFPASGNRSATFK 866

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
MGI|MGI:1355322	887	Exosc10 "exosome component 10"	0.151	0.090	0.45	9.9e-14
UNIPROTKB|E1C525	910	EXOSC10 "Uncharacterized prote	0.155	0.090	0.512	1e-13
UNIPROTKB|Q01780	885	EXOSC10 "Exosome component 10"	0.181	0.108	0.402	3.5e-12
ZFIN|ZDB-GENE-040426-781	899	exosc10 "exosome component 10"	0.242	0.142	0.325	9.7e-12
UNIPROTKB|A7E323	702	EXOSC10 "Uncharacterized prote	0.181	0.136	0.412	3e-11
UNIPROTKB|E1BMZ5	890	EXOSC10 "Uncharacterized prote	0.181	0.107	0.412	4.3e-11
UNIPROTKB|F1PI20	908	EXOSC10 "Uncharacterized prote	0.181	0.105	0.412	7.3e-11
UNIPROTKB|B4DKG8	679	EXOSC10 "Exosome component 10"	0.181	0.141	0.402	1e-10
RGD|2323986	859	LOC100366273 "rCG30986-like" [	0.159	0.097	0.441	1.1e-10
UNIPROTKB|D4A1X2	884	LOC100366273 "Protein LOC10036	0.159	0.095	0.441	1.2e-10

MGI|MGI:1355322 Exosc10 "exosome component 10" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 36/80 (45%), Positives = 52/80 (65%)

Query:    19 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
             L  V++RS D+C + + K + ++ SYL +Y  Q   LN+QQL     L  WRD  AR +D
Sbjct:   466 LQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARRED 525

Query:    79 ESTGYVLPNRTLIEIAKQLP 98
             ES GYVLPN  +++IA++LP
Sbjct:   526 ESYGYVLPNHMMLKIAEELP 545

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000178 "exosome (RNase complex)" evidence=ISO

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000460 "maturation of 5.8S rRNA" evidence=ISO

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0004532 "exoribonuclease activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO;TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=ISO

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0071028 "nuclear mRNA surveillance" evidence=ISO

GO:0071034 "CUT catabolic process" evidence=ISO

GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=ISO

UNIPROTKB|E1C525 EXOSC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 42/82 (51%), Positives = 53/82 (64%)

Query:    17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 76
             T L  V++RS D+C + Y K L S+ SYL +Y  Q   LN QQLA    L  WRD  AR 
Sbjct:   482 TQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFSWRDKTARQ 541

Query:    77 DDESTGYVLPNRTLIEIAKQLP 98
             +DES GYVLPN  L++IA++LP
Sbjct:   542 EDESIGYVLPNHMLLKIAEELP 563

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0004532 "exoribonuclease activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=IEA

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=IEA

UNIPROTKB|Q01780 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:     2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
             K++L  M +        L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL 
Sbjct:   450 KMRLE-MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 508

Query:    62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
                 L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct:   509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IEA

GO:0071044 "histone mRNA catabolic process" evidence=IMP

GO:0000178 "exosome (RNase complex)" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000460 "maturation of 5.8S rRNA" evidence=IMP

GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=IMP

GO:0071034 "CUT catabolic process" evidence=IMP

GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=IMP

GO:0035327 "transcriptionally active chromatin" evidence=IMP

GO:0004532 "exoribonuclease activity" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IMP

GO:0071028 "nuclear mRNA surveillance" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-781 exosc10 "exosome component 10" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 42/129 (32%), Positives = 70/129 (54%)

Query:    17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 76
             T + +V+ +S D+  + Y K + +E+SY+ +Y  Q    N QQLA    +  WRD +AR 
Sbjct:   462 TLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQLAAFRLMYAWRDKLARE 521

Query:    77 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-N 135
             +DESTGY+LPN  +++IA +LP     +          + + +  +  +IK + +     
Sbjct:   522 EDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQINELHQLIKQARETPLLK 581

Query:   136 FEVIAQKLK 144
              EV+AQK K
Sbjct:   582 AEVVAQKRK 590

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

UNIPROTKB|A7E323 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query:     2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
             K++L    + +E   T L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL 
Sbjct:   450 KMRLELWERGNEQP-TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 508

Query:    62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
                 L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct:   509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BMZ5 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 40/97 (41%), Positives = 59/97 (60%)

Query:     2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
             K++L    + +E   T L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL 
Sbjct:   453 KMRLELWERGNEQP-TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 511

Query:    62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
                 L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct:   512 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 548

GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=IEA

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=IEA

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004532 "exoribonuclease activity" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PI20 EXOSC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 40/97 (41%), Positives = 58/97 (59%)

Query:     2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
             K++L    + +E     L  V++RS D+C + + K L ++ SYL +Y  Q   LN QQL 
Sbjct:   472 KMRLELWERGNEQP-VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLT 530

Query:    62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
                 L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct:   531 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 567

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B4DKG8 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:     2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
             K++L  M +        L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL 
Sbjct:   450 KMRLE-MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 508

Query:    62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
                 L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct:   509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|2323986 LOC100366273 "rCG30986-like" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query:    15 SDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 72
             +D P  L  V++RS D+C + + K + ++ SYL +Y  Q   LN+QQL     L  WRD 
Sbjct:   459 NDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDK 518

Query:    73 IARADDESTGYVLPNRTLIEIAKQLP 98
              AR +DES GYVLPN  +++IA++LP
Sbjct:   519 TARREDESYGYVLPNHMMLKIAEELP 544

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

UNIPROTKB|D4A1X2 LOC100366273 "Protein LOC100366273" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query:    15 SDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 72
             +D P  L  V++RS D+C + + K + ++ SYL +Y  Q   LN+QQL     L  WRD 
Sbjct:   459 NDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDK 518

Query:    73 IARADDESTGYVLPNRTLIEIAKQLP 98
              AR +DES GYVLPN  +++IA++LP
Sbjct:   519 TARREDESYGYVLPNHMMLKIAEELP 544

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004532 "exoribonuclease activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0071034 "CUT catabolic process" evidence=IEA

GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=IEA

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	528
pfam00570	68	pfam00570, HRDC, HRDC domain	1e-14
smart00341	81	smart00341, HRDC, Helicase and RNase D C-terminal	6e-10
COG0349	361	COG0349, Rnd, Ribonuclease D [Translation, ribosom	1e-09
TIGR01388	367	TIGR01388, rnd, ribonuclease D	5e-05

>gnl|CDD|201312 pfam00570, HRDC, HRDC domain

 Score = 68.7 bits (169), Expect = 1e-14
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 59  QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 118
           QLA++  L EWRD +AR +D     +  + TL+EIA++LP T  +L R+       +ERY
Sbjct: 1   QLALLKALREWRDELAREEDVPPYVIFSDATLLEIAEKLPRTLEELLRIPGVGPRKLERY 60

Query: 119 MGPVLSII 126
              +L II
Sbjct: 61  GEEILEII 68

The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain cause human disease. It is interesting to note that the RecQ helicase in Deinococcus radiodurans has three tandem HRDC domains. Length = 68

>gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query: 58  QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 117
           +QL ++  L +WRD IAR +D    +VLP+ TLI++A  LPT  ++L  +         R
Sbjct: 3   RQLRLLRRLRQWRDEIARREDVPPYFVLPDETLIKMAAALPTNVSELLAIDGVGEEKARR 62

Query: 118 YMGPVLSIIKN 128
           Y   +L++I+ 
Sbjct: 63  YGKDLLAVIQE 73

Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease. Length = 81

>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 28  DVCRQL---YEKELLSENSYLHIYGLQGA-GLNAQQLAVVAGLCEWRDVIARADDESTGY 83
           D  R L      ++L E+++  I   + A  L+ ++LAV+  L  WR+  AR  D +  +
Sbjct: 177 DEFRLLPTRRTYKVLPEDAWREI---KIAHSLDPRELAVLRELAAWREREARERDLARNF 233

Query: 84  VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 128
           VL +  L E+A+  P    +L   L        R+   +L+++ N
Sbjct: 234 VLKDEALWELARYTPKNLKELDA-LGLIPKERRRHGKLLLALLAN 277

Length = 361

>gnl|CDD|130455 TIGR01388, rnd, ribonuclease D

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 21/53 (39%), Positives = 27/53 (50%)

Query: 55  LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 107
           L  QQLAV+  L  WR+  AR  D    +VL    L E+A+Q P    +L  L
Sbjct: 205 LRPQQLAVLQALAAWREREARERDLPRNFVLKEEALWELARQAPGNLTELASL 257

This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown [Transcription, RNA processing]. Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	528
KOG2206	687	consensus Exosome 3'-5' exoribonuclease complex, s	99.88
PRK10829	373	ribonuclease D; Provisional	99.78
TIGR01388	367	rnd ribonuclease D. This model describes ribonucle	99.76
PF00570	68	HRDC: HRDC domain Bloom syndrome. Werner syndrome.	99.62
smart00341	81	HRDC Helicase and RNase D C-terminal. Hypothetical	99.6
COG0349	361	Rnd Ribonuclease D [Translation, ribosomal structu	99.53
TIGR01389	591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	98.91
PRK11057	607	ATP-dependent DNA helicase RecQ; Provisional	98.27
PLN03137	1195	ATP-dependent DNA helicase; Q4-like; Provisional	97.96
COG0514	590	RecQ Superfamily II DNA helicase [DNA replication,	97.45
PF11408	80	Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR02	91.77

>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.9e-22  Score=216.68  Aligned_cols=125  Identities=34%  Similarity=0.537  Sum_probs=111.9

Q ss_pred             ChhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHHhhccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 009712            1 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES   80 (528)
Q Consensus         1 MRneLi~~s~~s~~~~nlL~wVLerS~eLcLq~YEKe~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDeP   80 (528)
                      ||.+|-+.++.       ..-++.++..+|...|.++.+....|+.+...+. .+++.|+.||++|++|||.+||++|+|
T Consensus       356 lr~el~~~a~~-------~~~~~~~~~d~c~~~~~k~~~~~~sy~~v~~~q~-~ln~~q~~~l~~L~~wRd~iARaeDES  427 (687)
T KOG2206|consen  356 LRKELKRLAKG-------RAVTYSESRDMCTNGYKKKTFCTKSYLEVEDIQS-RLNSSQLDVLRALLRWRDFIARAEDES  427 (687)
T ss_pred             HHHHHHHHhcc-------cccccchhhhhhhcceecccCCCcchHhHHHHHh-ccchhHHHHHHHHHHHHHHHHhhccCC
Confidence            56677666531       1123448999999999999999999999998875 599999999999999999999999999


Q ss_pred             CCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhcc
Q 009712           81 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA  133 (528)
Q Consensus        81 p~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp  133 (528)
                      ++|||||++|+.||+.+|.++..|++++...+++|++|...++.||+.|++..
T Consensus       428 ~~yVlpN~~ll~l~e~~P~~v~gl~~~ln~~~p~vkq~~~~~~~ii~~a~~~~  480 (687)
T KOG2206|consen  428 VHYVLPNDQLLKLAEERPDTVDGLLGGLNRLSPLVKQNVMDFLYIIRSAGRGF  480 (687)
T ss_pred             CceecccHHHHHHHHHCCccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999764

>PRK10829 ribonuclease D; Provisional

Probab=99.78  E-value=8.4e-19  Score=182.64  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=105.6

Q ss_pred             CcHHHHHHHHHHHHHHHHhhccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHh
Q 009712           17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ   96 (528)
Q Consensus        17 nlL~wVLerS~eLcLq~YEKe~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq   96 (528)
                      .++.|++++|+.+|...+. ...++..|++|++.  +.|+++||+||++|++|||++||.+|+|++|||+|++|++||++
T Consensus       174 g~~~w~~ee~~~l~~~~~~-~~~~~~~~~~ik~~--~~L~~~~lavl~~L~~WRe~~Ar~~d~p~~~Vl~d~~L~~lA~~  250 (373)
T PRK10829        174 GWLPAALDECRLLCQRRQE-VLAPEEAYRDITNA--WQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWQVARY  250 (373)
T ss_pred             CcHHHHHHHHHHHHhcccc-CCChHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHHhCCCcceecChHHHHHHHHh
Confidence            4899999999999986533 23345789999975  58999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhccc-chHHH
Q 009712           97 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-NFEVI  139 (528)
Q Consensus        97 ~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp~-~~ps~  139 (528)
                      +|++..+|.++ ++.+..+++|+++|+++|++|.+.+. .+|..
T Consensus       251 ~P~~~~~L~~~-~~~~~~~r~~g~~ll~~i~~a~~~~~~~~P~~  293 (373)
T PRK10829        251 MPGSLGELDSL-GLSGSEIRFHGKTLLALVAKAQALPEEALPPP  293 (373)
T ss_pred             CCCCHHHHHhc-cCChHhHHhhHHHHHHHHHHHhcCCHhhCCCC
Confidence            99999999999 88889999999999999999998765 46544

>TIGR01388 rnd ribonuclease D

Probab=99.76  E-value=2.7e-18  Score=177.84  Aligned_cols=118  Identities=25%  Similarity=0.338  Sum_probs=105.3

Q ss_pred             CcHHHHHHHHHHHHHHH-HhhccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHH
Q 009712           17 TPLTEVYKRSYDVCRQL-YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK   95 (528)
Q Consensus        17 nlL~wVLerS~eLcLq~-YEKe~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAk   95 (528)
                      +++.|+.++|..++... |.  ..++..|++|++.  +.|+++||+||++|++|||.+||++|+|++|||+|++|++||+
T Consensus       170 g~~~w~~ee~~~l~~~~~~~--~~~~~~~~~i~~~--~~l~~~~l~~l~~L~~wRe~~A~~~d~p~~~il~d~~l~~lA~  245 (367)
T TIGR01388       170 GRLAWLEEECTLLTDRRTYV--VNPEDAWRDIKNA--WQLRPQQLAVLQALAAWREREARERDLPRNFVLKEEALWELAR  245 (367)
T ss_pred             CcHHHHHHHHHHHhccccCC--CChHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHH
Confidence            58999999999999865 33  3455689999974  5799999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhccc-chHHH
Q 009712           96 QLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-NFEVI  139 (528)
Q Consensus        96 q~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp~-~~ps~  139 (528)
                      ++|+|..+|.++ ++.+..+++|+++|+++|++|.+.+. .+|..
T Consensus       246 ~~P~~~~~l~~~-~~~~~~~r~~~~~l~~~i~~a~~~~~~~~P~~  289 (367)
T TIGR01388       246 QAPGNLTELASL-GPKGSEIRKHGDTLLALVKTALALPEDALPQA  289 (367)
T ss_pred             hCCCCHHHHHhc-cCChHHHHhhHHHHHHHHHHHhhCCHhhCCCC
Confidence            999999999999 88889999999999999999988765 45554

This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.

>PF00570 HRDC: HRDC domain Bloom syndrome

Probab=99.62  E-value=8.2e-16  Score=122.11  Aligned_cols=68  Identities=35%  Similarity=0.586  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHH
Q 009712           59 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII  126 (528)
Q Consensus        59 QLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeII  126 (528)
                      |++++++|++||+.+|++.|+++++||+|.+|.+||+.+|+|.++|.+|.|+....+++||++|+++|
T Consensus         1 q~~~~~~L~~~R~~~A~~~~~~~~~Il~~~~L~~ia~~~P~s~~~L~~i~g~~~~~~~~~g~~il~~I   68 (68)
T PF00570_consen    1 QLALLKALKEWREELAREEDVPPYRILSDEALLEIAKRLPTSIEELLQIPGMGKRKVRKYGDEILEII   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH--SSHHHHHTSTTCGHHHHHHCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCcCcccccCHHHHHHHHHhCCCCHHHHHHccCCCHHHHHHHHHHHHhhC
Confidence            78999999999999999999999999999999999999999999999999999999999999999987

Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....

>smart00341 HRDC Helicase and RNase D C-terminal

Probab=99.60  E-value=3.5e-15  Score=121.53  Aligned_cols=77  Identities=32%  Similarity=0.534  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhcc
Q 009712           57 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA  133 (528)
Q Consensus        57 ~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp  133 (528)
                      ++++++|++|+.||+.+|++.|+|+++||+|.+|++||+.+|+|..+|.++.++....+++|+..|+.+|+.+.+.+
T Consensus         2 ~~~~~~~~~L~~wR~~~A~~~~~~~~~I~~~~~L~~ia~~~P~~~~~L~~i~g~~~~~~~~~g~~~~~~i~~~~~~~   78 (81)
T smart00341        2 ERQLRLLRRLRQWRDEIARREDVPPYFVLPDETLIKMAAALPTNVSELLAIDGVGEEKARRYGKDLLAVIQEASDSP   78 (81)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            57899999999999999999999999999999999999999999999999999988999999999999999998764

Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.4e-14  Score=147.60  Aligned_cols=114  Identities=23%  Similarity=0.271  Sum_probs=102.8

Q ss_pred             CcHHHHHHHHHHHHHHHHhhccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHh
Q 009712           17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ   96 (528)
Q Consensus        17 nlL~wVLerS~eLcLq~YEKe~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq   96 (528)
                      +++.|+.++|..+..+++.. ..+...|+++..  .+.+.+.++++++.|++|||++||.+|+|++|||+|+.|+++|+.
T Consensus       170 ~r~~~a~~ef~~l~~r~~~~-~~~~~~w~~i~~--a~~~~p~~la~l~~La~wRe~~Ar~rd~~~~~vl~de~i~~~a~~  246 (361)
T COG0349         170 GRLEWAEDEFRLLPTRRTYK-VLPEDAWREIKI--AHSLDPRELAVLRELAAWREREARERDLARNFVLKDEALWELARY  246 (361)
T ss_pred             CchHHHHHHHHHhhhccccc-cChHhHHHHhhh--hhcCChHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHh
Confidence            58999999999998875442 467889999986  368999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhccc
Q 009712           97 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA  134 (528)
Q Consensus        97 ~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp~  134 (528)
                      +|++..+|..+..+.. .++.|+..|+.+|.+|...|.
T Consensus       247 ~P~~~~~l~~l~~~~~-~~~~~~~~l~~~~~~a~~~p~  283 (361)
T COG0349         247 TPKNLKELDALGLIPK-ERRRHGKLLLALLANALASPE  283 (361)
T ss_pred             CCCCHHHHHhccCCcc-cchhhhHHHHHHHHHHHhCch
Confidence            9999999999876555 889999999999999998875

>TIGR01389 recQ ATP-dependent DNA helicase RecQ

Probab=98.91  E-value=2.6e-09  Score=116.25  Aligned_cols=70  Identities=23%  Similarity=0.325  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHH
Q 009712           59 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN  128 (528)
Q Consensus        59 QLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~  128 (528)
                      +.++|++|++||+++|++.|+|+++||+|.+|++||+.+|+|..+|.++.|+....+++||+.|+++|+.
T Consensus       521 ~~~l~~~L~~wR~~~A~~~~~p~~~If~d~~L~~ia~~~P~~~~~l~~i~gv~~~k~~~~G~~~l~~i~~  590 (591)
T TIGR01389       521 DNALFEALRELRKEQADEQNVPPYVIFSDSTLREMAEKRPATLNALLKIKGVGQNKLDRYGEAFLEVIRE  590 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCeEEECHHHHHHHHHHCCCCHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence            4499999999999999999999999999999999999999999999999998999999999999999975

The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional

Probab=98.27  E-value=2e-06  Score=94.81  Aligned_cols=74  Identities=26%  Similarity=0.387  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHh
Q 009712           58 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ  131 (528)
Q Consensus        58 rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~e  131 (528)
                      ..-.++.+|..||.++|++.++|++.||+|.+|.+||+.+|+|..+|.+|.|+....+.+||..++++|+...+
T Consensus       531 ~~~~l~~~Lr~~R~~~a~~~~~~~~~if~d~tL~~ia~~~P~t~~~l~~i~Gvg~~K~~~yg~~~l~~i~~~~~  604 (607)
T PRK11057        531 YDRKLFAKLRKLRKSIADEENIPPYVVFNDATLIEMAEQMPITASEMLSVNGVGQRKLERFGKPFMALIRAHVD  604 (607)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCCeEEECHHHHHHHHHHCCCCHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999999999999999999999999999999988764

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional

Probab=97.96  E-value=1.7e-05  Score=93.28  Aligned_cols=72  Identities=19%  Similarity=0.315  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHH--hCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHh
Q 009712           60 LAVVAGLCEWRDVIARA--DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ  131 (528)
Q Consensus        60 LAVLRaL~eWRD~iARe--eDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~e  131 (528)
                      -.++.+|..||..+|++  +++|++.||+|.+|.+||+.+|+|..+|.+|.|+....+.+||..+|++|+..+.
T Consensus      1029 ~~Lfe~Lr~lR~elA~e~~~~vppyvIFsD~TL~eIA~~~P~T~~eLl~I~GVG~~KlekYG~~fL~vI~~~~~ 1102 (1195)
T PLN03137       1029 AILYTALRKLRTALVKEAGDGVMAYHIFGNATLQQISKRIPRTKEELLEINGLGKAKVSKYGDRLLETIESTIN 1102 (1195)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            35999999999999999  6999999999999999999999999999999999999999999999999987653

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]

Probab=97.45  E-value=0.00024  Score=79.23  Aligned_cols=72  Identities=24%  Similarity=0.311  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHH
Q 009712           59 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM  130 (528)
Q Consensus        59 QLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~  130 (528)
                      ...++.+|..||-++|.+.|+||.-|++|.+|.++|+.+|.+..+|..+.|.....+.+|+..++++|++..
T Consensus       517 ~~~lf~~lr~~r~~~a~~~~vp~~vif~d~tl~~ma~~~p~~~~~~~~i~gvg~~k~~~yg~~fl~~i~~~~  588 (590)
T COG0514         517 DRDLFERLRALRKEIADEENVPPYVVFSDATLKEMAEKQPQSADELLSINGVGEAKLERYGQAFLAVIQAHA  588 (590)
T ss_pred             cHHHHHHHHHHHHHhhhhhcCCceEEecchHHHHHHHHcCCCHHHHHHhcCCcccchhhccHHHHHHHHHhc
Confidence            456999999999999999999999999999999999999999999999999988999999999999998754

>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner

Probab=91.77  E-value=0.43  Score=41.19  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHH
Q 009712           62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE  116 (528)
Q Consensus        62 VLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VR  116 (528)
                      .+..|.+-|-.++.+.+-|..-.|+|.+|-.||..+|+|..++.++.+....+.+
T Consensus         8 aY~~Lr~~~~~~~~~~n~p~~~f~sd~~LKk~A~~LP~te~eF~~l~g~~~~~~~   62 (80)
T PF11408_consen    8 AYEKLREISINLSNRMNPPNDNFMSDTILKKMATKLPTTEEEFSKLVGINEQQRK   62 (80)
T ss_dssp             HHHHHHHHHHHHHHSSSS--S-SS-HHHHHHHHHH---SHHHHGGGS---HHHHH
T ss_pred             HHHHHHHHHHHHhhccCCCccccCCHHHHHHHHHHCCCCHHHHHHhcCCcHHHHH
Confidence            5678888899999999999999999999999999999999999999987666643

Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	528
3sah_A	428	Crystal Structure Of The Human Rrp6 Catalytic Domai		2e-14
3saf_A	428	Crystal Structure Of The Human Rrp6 Catalytic Domai		2e-14
2cpr_A	124	Solution Structure Of The Hrdc Domain Of Human Exos		1e-10
2hbj_A	410	Structure Of The Yeast Nuclear Exosome Component, R		6e-05

>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 19  LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
           L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL     L  WRD  AR +D
Sbjct: 288 LQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARRED 347
Query: 79  ESTGYVLPNRTLIEIAKQLP 98
           ES GYVLPN  +++IA++LP
Sbjct: 348 ESYGYVLPNHMMLKIAEELP 367

>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 19  LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
           L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL     L  WRD  AR +D
Sbjct: 288 LQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARRED 347
Query: 79  ESTGYVLPNRTLIEIAKQLP 98
           ES GYVLPN  +++IA++LP
Sbjct: 348 ESYGYVLPNHMMLKIAEELP 367

>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome Component 10 Length = 124

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 36 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 95
          K + ++ SYL +Y  Q   LN QQL     L  WRD  AR +DES GYVLPN  +++IA+
Sbjct: 8  KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 96 QLP 98
          +LP
Sbjct: 68 ELP 70

>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 61  AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
            +V  L +WRD+IAR DDES  +V+PN+ L  +    PT    +  L      ++ +   
Sbjct: 314 VLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAK 373
Query: 121 PVLSIIKNSMQNAAN 135
            + ++I+++++N  N
Sbjct: 374 LLANLIRDALRNIKN 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	528
3saf_A	428	Exosome component 10; exoribonuclease, RNA exosome	3e-28
2hbj_A	410	Exosome complex exonuclease RRP6; RNA metabolism,	9e-22
3cym_A	440	Uncharacterized protein BAD_0989; structural genom	2e-18
1yt3_A	375	Ribonuclease D, RNAse D; exoribonuclease, exonucle	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428

 Score =  115 bits (290), Expect = 3e-28
 Identities = 41/150 (27%), Positives = 73/150 (48%)

Query: 10  KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 69
           +        L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQL     L  W
Sbjct: 279 ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAW 338

Query: 70  RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 129
           RD  AR +DES GYVLPN  +++IA++LP     +          + + +  +  +I+ +
Sbjct: 339 RDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQA 398

Query: 130 MQNAANFEVIAQKLKEERMEVASEETEVLV 159
            +       +A  +K+     ++E  E ++
Sbjct: 399 REMPLLKSEVAAGVKKSGPLPSAERLENVL 428

>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410

 Score = 96.4 bits (240), Expect = 9e-22
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 19  LTEVYKRSYDVCRQLYEK--------------ELLSENSYLHIYGLQGAGLNAQQLAVVA 64
           L  V   S +V ++ +E                +  E+ +  +       +  ++  +V 
Sbjct: 260 LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQ--YNIPPEREVLVR 317

Query: 65  GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 124
            L +WRD+IAR DDES  +V+PN+ L  +    PT    +  L      ++ +    + +
Sbjct: 318 ELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLAN 377

Query: 125 IIKNSMQNAAN 135
           +I+++++N  N
Sbjct: 378 LIRDALRNIKN 388

>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440

 Score = 86.9 bits (215), Expect = 2e-18
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 22  VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 81
             +      ++           ++H+  +     + Q LA+V  L   RD +AR  D + 
Sbjct: 196 AQEEFDYALKEGLGPRKEHLIPWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAP 255

Query: 82  GYVLPNRTLIEIAKQLPTTAAKLRRL 107
             +L + ++IE+AK+ P  AA+ R +
Sbjct: 256 TLLLSDSSIIEVAKRKPHNAAQFRSI 281

>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 41  ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 100
           E+++  I       L  +QLA +  L +WR   AR  D +  +V+    L  +A+ +P +
Sbjct: 197 EDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGS 254

Query: 101 AAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 131
             +L   L    S I  +   +L++++ +  
Sbjct: 255 LGELDS-LGLSGSEIRFHGKTLLALVEKAQT 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 1e-10
 Identities = 58/336 (17%), Positives = 107/336 (31%), Gaps = 101/336 (30%)

Query: 21  EVYKRSYDVCR-QLYE--KELLSE---NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 74
           +V+ + Y+V R Q Y   ++ L E      + I G+ G+G     +A+    C    V  
Sbjct: 124 QVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDV--CLSYKVQC 178

Query: 75  RADDE----STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 130
           + D +    +        T++E+ ++L      L ++  +  S  +      L I  +S+
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRI--HSI 230

Query: 131 QNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP---NVG-------RE-SVDGV 179
           Q       + + LK +  E       +LVL    N K     N+        R   V   
Sbjct: 231 QAE-----LRRLLKSKPYENC-----LLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--T 278

Query: 180 DALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLS 239
           D L   T  H         +   +  +  E                     +        
Sbjct: 279 DFLSAATTTHIS------LDHHSMTLTPDE----VKSLLL-----------KYLDCRP-- 315

Query: 240 SSGQSRDL--NACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQ 297
                +DL      + +PR       ++          + +    +D  K      KL  
Sbjct: 316 -----QDLPREVLTT-NPRRL-----SI------IAESIRDGLATWDNWKHV-NCDKLTT 357

Query: 298 -IKSSVNL--P------FH--SIFARDEQLKPVDVM 322
            I+SS+N+  P      F   S+F     + P  ++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	528
3saf_A	428	Exosome component 10; exoribonuclease, RNA exosome	99.81
2hbj_A	410	Exosome complex exonuclease RRP6; RNA metabolism,	99.76
1yt3_A	375	Ribonuclease D, RNAse D; exoribonuclease, exonucle	99.72
3cym_A	440	Uncharacterized protein BAD_0989; structural genom	99.64
1wud_A	89	ATP-dependent DNA helicase RECQ; DNA-binding domai	99.6
2rhf_A	77	DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi	99.56
2kv2_A	85	Bloom syndrome protein; HRDC domain, disease mutat	99.48
2rrd_A	101	BLM HRDC domain, HRDC domain from bloom syndrome p	99.47
2e1f_A	103	Werner syndrome ATP-dependent helicase; HRDC domai	99.4
2dgz_A	113	Werner syndrome protein variant; HRDC domain, stru	99.39
1d8b_A	81	SGS1 RECQ helicase; five helices, three-helical bu	95.42

>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A

Probab=99.81  E-value=1.7e-20  Score=196.45  Aligned_cols=142  Identities=28%  Similarity=0.475  Sum_probs=122.9

Q ss_pred             ChhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHHhhccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Q 009712            1 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES   80 (528)
Q Consensus         1 MRneLi~~s~~s~~~~nlL~wVLerS~eLcLq~YEKe~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDeP   80 (528)
                      |+.+|.+.+.   ...+++.||+++|+.+|+++|+++.+++..|+++++...+.++++|+++|++|++||+++||++|+|
T Consensus       273 L~~~L~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p  349 (428)
T 3saf_A          273 MRLEMWERGN---GQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDES  349 (428)
T ss_dssp             HHHHHHHHTT---SCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCC---ccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3566666542   2345899999999999998898877888889998776556899999999999999999999999999


Q ss_pred             CCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhcccchHHHHHHhhh
Q 009712           81 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKE  145 (528)
Q Consensus        81 p~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp~~~ps~~e~lk~  145 (528)
                      ++|||+|++|++||+.+|+|..+|.+|.|+.++.+++||++|+++|++|.+.+-..++....+|+
T Consensus       350 ~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~~~p~~~~~~~~~~~~  414 (428)
T 3saf_A          350 YGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKK  414 (428)
T ss_dssp             HHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHHTSCCCHHHHCC----
T ss_pred             cCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCCcCcchhhhhcc
Confidence            99999999999999999999999999999999999999999999999999998777776665554

>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*

Probab=99.76  E-value=3.8e-19  Score=184.42  Aligned_cols=116  Identities=23%  Similarity=0.392  Sum_probs=103.7

Q ss_pred             CcHHHHHHHHHHHHHHHHhh--------------ccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009712           17 TPLTEVYKRSYDVCRQLYEK--------------ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG   82 (528)
Q Consensus        17 nlL~wVLerS~eLcLq~YEK--------------e~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~   82 (528)
                      +++.||+++|+.+|.+.|+.              ...+...|+++++.  +.+++++++||++|++||+++||++|+|++
T Consensus       258 g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~  335 (410)
T 2hbj_A          258 NKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQ--YNIPPEREVLVRELYQWRDLIARRDDESPR  335 (410)
T ss_dssp             TCHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSCSSC--SCCCSTTHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred             CchHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            47999999999999987642              12235679999875  578999999999999999999999999999


Q ss_pred             cccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhccc
Q 009712           83 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA  134 (528)
Q Consensus        83 yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp~  134 (528)
                      |||+|++|++||+.+|+|.++|.+|.|+....+++||++|+++|+++++.+.
T Consensus       336 ~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~~~~  387 (410)
T 2hbj_A          336 FVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIK  387 (410)
T ss_dssp             HHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999976554

>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5

Probab=99.72  E-value=2.5e-17  Score=167.58  Aligned_cols=118  Identities=19%  Similarity=0.221  Sum_probs=106.1

Q ss_pred             CcHHHHHHHHHHHHHHHHhhccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHh
Q 009712           17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ   96 (528)
Q Consensus        17 nlL~wVLerS~eLcLq~YEKe~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq   96 (528)
                      +++.||+++|+..+...+.. ..++..|+++++.  +.+++++++++++|++||+++||++|+|++|||+|++|++||+.
T Consensus       174 g~~~l~~~e~E~pl~~~~~~-~~~~~~~~~~~~~--~~l~~~~~~~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~  250 (375)
T 1yt3_A          174 GWLPAALDECRLMQMRRQEV-VAPEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARY  250 (375)
T ss_dssp             TCHHHHHHHHHHHHHHHHCC-CCGGGGGGGSTTG--GGSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcccC-CCchHHHHhccCc--ccCCHHHHHHHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHH
Confidence            47889999999999987653 3456789999875  46899999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHhccc-chHH
Q 009712           97 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-NFEV  138 (528)
Q Consensus        97 ~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~elp~-~~ps  138 (528)
                      +|+|.++|.++ |+....+++||+.|+++|+++.+.++ .+|.
T Consensus       251 ~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~~~~~~~p~  292 (375)
T 1yt3_A          251 MPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ  292 (375)
T ss_dssp             CCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCGGGSCC
T ss_pred             CCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhCCHhhCCC
Confidence            99999999999 99999999999999999999998765 4553

>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.64  E-value=9.8e-17  Score=167.92  Aligned_cols=121  Identities=18%  Similarity=0.230  Sum_probs=103.8

Q ss_pred             CcHHHHHHHHHHHHHHHHhhccCChhHHHHhhhhccCCC--CHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHH
Q 009712           17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA   94 (528)
Q Consensus        17 nlL~wVLerS~eLcLq~YEKe~~deesYlrIkG~~~~~L--s~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELA   94 (528)
                      .++.|+.++|..+|...+.++......|+++++..  .+  +++|++||++|++||+.+||++|+|++|||+|++|++||
T Consensus       191 g~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA  268 (440)
T 3cym_A          191 GKMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHIT--EVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVA  268 (440)
T ss_dssp             TCHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGG--GGTTCHHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhccccccCCCchHHHHHhcccc--ccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHH
Confidence            37899999999999977654445667898887643  45  999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHhhhCCChhH------------------HHh-hHHHHHHHHHHHHhccc-chHHH
Q 009712           95 KQLPTTAAKLRRLLKSKHSY------------------IER-YMGPVLSIIKNSMQNAA-NFEVI  139 (528)
Q Consensus        95 kq~PtS~~eLlrI~g~~~~~------------------VRr-hgdeILeIIr~A~elp~-~~ps~  139 (528)
                      +.+|+|.++|.++.++....                  +++ |++.|+++|+++.+.+. .||..
T Consensus       269 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~i~~~~~~~~~~~P~~  333 (440)
T 3cym_A          269 KRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKPSMWKNIIQDALALPPSEWPDV  333 (440)
T ss_dssp             HHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHHHHHHHHHHHTSCGGGSCC-
T ss_pred             HHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhhhHHHHHHHHHHHHhCCHhhCCCC
Confidence            99999999999998765444                  488 99999999999999875 57754

>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1

Probab=99.60  E-value=6.4e-16  Score=129.89  Aligned_cols=77  Identities=25%  Similarity=0.336  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHh
Q 009712           55 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ  131 (528)
Q Consensus        55 Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~e  131 (528)
                      -+++++++|++|+.||+.+|+++|+||++||+|.+|++||+.+|+|.++|.+|.|+....+++||+.||++|+.+.+
T Consensus         8 ~~~~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~   84 (89)
T 1wud_A            8 GGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD   84 (89)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999864

>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}

Probab=99.56  E-value=5.5e-15  Score=120.54  Aligned_cols=72  Identities=25%  Similarity=0.266  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHH
Q 009712           59 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM  130 (528)
Q Consensus        59 QLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~  130 (528)
                      ..++|++|+.||+++|+++|+||++||+|.+|++||+.+|+|.++|..|.|+....+++||+.|+++|++++
T Consensus         4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~   75 (77)
T 2rhf_A            4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTVL   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999999999999999999875

>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}

Probab=99.48  E-value=8.9e-14  Score=115.80  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHH
Q 009712           57 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM  130 (528)
Q Consensus        57 ~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~  130 (528)
                      +....+|++|..||+.+|+++|+|+++||+|.+|++||+.+|+|.++|..|.|+....+++||+.||++|+.+.
T Consensus         4 ~~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~   77 (85)
T 2kv2_A            4 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS   77 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999874

>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}

Probab=99.47  E-value=9.6e-14  Score=119.84  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHH
Q 009712           57 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM  130 (528)
Q Consensus        57 ~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~  130 (528)
                      ..+.++|++|..||+.+|+++|+|+++||+|.+|++||+.+|+|.++|..|.|+....+++||+.||++|+++.
T Consensus        19 e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~   92 (101)
T 2rrd_A           19 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS   92 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999874

>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A

Probab=99.40  E-value=5.1e-13  Score=115.75  Aligned_cols=72  Identities=25%  Similarity=0.338  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHH
Q 009712           58 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM  130 (528)
Q Consensus        58 rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~  130 (528)
                      .+.++|++|..||..+|+++|+|+++||+|.+|++||+.+|+|.++|.+|.|+....+++| +.||++|+.+.
T Consensus        13 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~   84 (103)
T 2e1f_A           13 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFC   84 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999999999999 99999998874

>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1

Probab=99.39  E-value=5.1e-13  Score=117.65  Aligned_cols=73  Identities=25%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHh
Q 009712           58 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ  131 (528)
Q Consensus        58 rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~e  131 (528)
                      .+.++|++|..||..+|+++|+|+++||+|.+|++||+++|+|.++|.+|.|+....+++| +.||++|+.+.+
T Consensus        20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~   92 (113)
T 2dgz_A           20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQ   92 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999 999999988753

>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1

Probab=95.42  E-value=0.041  Score=46.33  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHh
Q 009712           62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER  117 (528)
Q Consensus        62 VLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRr  117 (528)
                      .+..|.+-|-.++.+...|...+|+|.+|.+||..+|+|-+++..+.|..+..+++
T Consensus         8 ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~   63 (81)
T 1d8b_A            8 TYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRR   63 (81)
T ss_dssp             HHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHH
Confidence            57788888999999999999999999999999999999999999999988777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	528
d2cpra1	113	a.60.8.4 (A:483-595) Exosome component 10, EXOSC10	7e-22
d2hbka1	96	a.60.8.4 (A:421-516) Exosome complex exonuclease R	3e-15
d1yt3a1	101	a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c	2e-12
d1wuda1	77	a.60.8.1 (A:530-606) HRDC domain from RecQ helicas	3e-05
d2e1fa1	94	a.60.8.1 (A:1142-1235) Werner syndrome ATP-depende	8e-05

>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: EXOSC10 HRDC domain-like
domain: Exosome component 10, EXOSC10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (219), Expect = 7e-22
 Identities = 33/112 (29%), Positives = 55/112 (49%)

Query: 36  KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 95
           K + ++ SYL +Y  Q   LN QQL     L  WRD  AR +DES GYVLPN  +++IA+
Sbjct: 1   KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 60

Query: 96  QLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEER 147
           +LP     +          + + +  +  +I+ + +       +A  +K+  
Sbjct: 61  ELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSS 112

>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: EXOSC10 HRDC domain-like
domain: Exosome complex exonuclease RRP6 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 22/81 (27%), Positives = 44/81 (54%)

Query: 55  LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 114
           +  ++  +V  L +WRD+IAR DDES  +V+PN+ L  +    PT    +  L      +
Sbjct: 14  IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEH 73

Query: 115 IERYMGPVLSIIKNSMQNAAN 135
           + +    + ++I+++++N  N
Sbjct: 74  VRQNAKLLANLIRDALRNIKN 94

>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: RNase D C-terminal domains
domain: Ribonuclease D
species: Escherichia coli [TaxId: 562]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 41  ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 100
           E+++  I       L  +QLA +  L +WR   AR  D +  +V+    L  +A+ +P +
Sbjct: 4   EDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGS 61

Query: 101 AAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 131
             +L  L  S    I  +   +L++++ +  
Sbjct: 62  LGELDSLGLSGSE-IRFHGKTLLALVEKAQT 91

>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Length = 77

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: HRDC domain from helicases
domain: HRDC domain from RecQ helicase
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 66  LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 125
           L + R  IA   +     V  + TLIE+A+Q+P TA+++  +       +ER+  P +++
Sbjct: 10  LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL 69

Query: 126 IKNSMQ 131
           I+  + 
Sbjct: 70  IRAHVD 75

>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: HRDC domain from helicases
domain: Werner syndrome ATP-dependent helicase, WRN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 53  AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 112
           A     Q+ +   L E R   A   D     +  N+ L+++AK  PTT   ++R+     
Sbjct: 6   AQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSE 65

Query: 113 SYIERYMGPVLSIIKNSMQ 131
                   P+L +IK+  Q
Sbjct: 66  GKAAML-APLLEVIKHFCQ 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	528
d2cpra1	113	Exosome component 10, EXOSC10 {Human (Homo sapiens	99.86
d1yt3a1	101	Ribonuclease D {Escherichia coli [TaxId: 562]}	99.81
d2hbka1	96	Exosome complex exonuclease RRP6 domain {Baker's y	99.78
d1wuda1	77	HRDC domain from RecQ helicase {Escherichia coli [	99.48
d2e1fa1	94	Werner syndrome ATP-dependent helicase, WRN {Human	99.36

>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: EXOSC10 HRDC domain-like
domain: Exosome component 10, EXOSC10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.1e-23  Score=176.59  Aligned_cols=107  Identities=30%  Similarity=0.476  Sum_probs=97.4

Q ss_pred             hccCChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHH
Q 009712           36 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI  115 (528)
Q Consensus        36 Ke~~deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~V  115 (528)
                      ||.++++.|+++++.+.+.|+++||+||++||.|||.+||++|+|++|||+|++|++||+.+|+|..+|.++.++.++.+
T Consensus         1 kp~~~e~~~~~l~~k~~~~l~~~qlavl~~L~~wRe~~Ar~~d~p~~~Vl~d~~L~~iA~~~P~~~~~L~~~~~~~~~~~   80 (113)
T d2cpra1           1 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV   80 (113)
T ss_dssp             CCCCCCTTCHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCSSSHHHHHTSSSCCTTT
T ss_pred             CCCCChHhHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHhCCCcceeeCHHHHHHHHHhCCCCHHHHHhhhCCChHHh
Confidence            45678889999987777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhcccchHHHHHH
Q 009712          116 ERYMGPVLSIIKNSMQNAANFEVIAQK  142 (528)
Q Consensus       116 RrhgdeILeIIr~A~elp~~~ps~~e~  142 (528)
                      ++|+++|+++|++|.+.|...++....
T Consensus        81 r~~g~~il~~I~~a~~~p~~~~~~~~~  107 (113)
T d2cpra1          81 RQQINEMHLLIQQAREMPLLKSEVAAG  107 (113)
T ss_dssp             TTTHHHHHHHHHHHHHSCCCSCCCCCC
T ss_pred             hhhHHHHHHHHHHHHhCCccccchhhh
Confidence            999999999999999988654444333

>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: RNase D C-terminal domains
domain: Ribonuclease D
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.9e-20  Score=156.20  Aligned_cols=96  Identities=22%  Similarity=0.303  Sum_probs=88.9

Q ss_pred             ChhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhH
Q 009712           40 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM  119 (528)
Q Consensus        40 deesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhg  119 (528)
                      +++.|++|+|.  +.|+++++++|++|+.|||.+|+++|+|++|||+|++|++||+.+|+|..+|.++ ++.+..+++||
T Consensus         3 Pe~~w~~ikg~--~~L~~~~l~~l~~L~~WRe~~A~~~d~p~~~Vl~d~~L~~la~~~P~~~~eL~~i-~~~~~~~~~~g   79 (101)
T d1yt3a1           3 PEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHG   79 (101)
T ss_dssp             GGGGGGGSTTG--GGSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHH
T ss_pred             hHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHHHHhCCCcceeECHHHHHHHHHHCCCCHHHHHHc-CCCHHHHHHHH
Confidence            46789999876  4799999999999999999999999999999999999999999999999999998 88899999999


Q ss_pred             HHHHHHHHHHHhccc-chHH
Q 009712          120 GPVLSIIKNSMQNAA-NFEV  138 (528)
Q Consensus       120 deILeIIr~A~elp~-~~ps  138 (528)
                      .+|+++|++|.+.++ .||.
T Consensus        80 ~~il~~i~~a~~~~~~~~P~   99 (101)
T d1yt3a1          80 KTLLALVEKAQTLPEDALPQ   99 (101)
T ss_dssp             HHHHHHHHHHHHSCGGGSCC
T ss_pred             HHHHHHHHHHHhCCHhhCCC
Confidence            999999999998865 5664

>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: EXOSC10 HRDC domain-like
domain: Exosome complex exonuclease RRP6 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.5e-20  Score=154.39  Aligned_cols=90  Identities=24%  Similarity=0.435  Sum_probs=85.3

Q ss_pred             hhHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHH
Q 009712           41 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG  120 (528)
Q Consensus        41 eesYlrIkG~~~~~Ls~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgd  120 (528)
                      +++|.+|++.  +.+++++++||++|+.|||.+||++|+|++|||+|++|++||..+|+|..+|.+|.++.+..+++||+
T Consensus         2 e~~w~~v~~~--~~l~~~~~~l~~~L~~wR~~~Ar~~d~~~~~Vl~d~~L~~iA~~~P~~~~eL~~i~g~~~~~~~~~g~   79 (96)
T d2hbka1           2 ESPWKILMYQ--YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAK   79 (96)
T ss_dssp             SSCSSSCSSC--SSCCGGGHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHH
T ss_pred             chHHHHhhcc--ccCCHHHHHHHHHHHHHHHHHHHHhCCCceeeeCHHHHHHHHHHCCCCHHHHhhccCCCHHHHHHHHH
Confidence            3579999875  47999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 009712          121 PVLSIIKNSMQN  132 (528)
Q Consensus       121 eILeIIr~A~el  132 (528)
                      +|+++|+++++.
T Consensus        80 eil~~I~~a~~~   91 (96)
T d2hbka1          80 LLANLIRDALRN   91 (96)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: HRDC domain from helicases
domain: HRDC domain from RecQ helicase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.6e-14  Score=115.46  Aligned_cols=72  Identities=26%  Similarity=0.383  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHh
Q 009712           60 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ  131 (528)
Q Consensus        60 LAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~e  131 (528)
                      -.++.+|..||..+|+..|+|+++||+|++|.+||+.+|+|.++|..|.|+....+++||++||++|+++++
T Consensus         4 ~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~s~~~L~~I~G~g~~k~~~yG~~il~~i~~~~~   75 (77)
T d1wuda1           4 RKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHHCCCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            368999999999999999999999999999999999999999999999999999999999999999998875

>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: HRDC-like
family: HRDC domain from helicases
domain: Werner syndrome ATP-dependent helicase, WRN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.5e-13  Score=111.74  Aligned_cols=75  Identities=24%  Similarity=0.294  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCCCcccChHHHHHHHHhCCCCHHHHHhhhCCChhHHHhhHHHHHHHHHHHHh
Q 009712           56 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ  131 (528)
Q Consensus        56 s~rQLAVLRaL~eWRD~iAReeDePp~yVLpDkaLLELAkq~PtS~~eLlrI~g~~~~~VRrhgdeILeIIr~A~e  131 (528)
                      ...+.+++.+|..||..+|+.+|+||++||+|++|.+||+..|+|.++|.+|.|+....+++||+ +|.+|.+..+
T Consensus         9 ~~~~~~L~~~L~~~R~~~A~~~~ip~~~I~~d~~L~~ia~~~P~t~~eL~~I~G~g~~k~~kyG~-~l~~I~~~~~   83 (94)
T d2e1fa1           9 QETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQ   83 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHTHH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCHheeeCHHHHHHHHHcCCCCHHHHcCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999995 9999987654