Citrus Sinensis ID: 009718

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
ccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccEEEcccHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccEEEcccccccccccccEEEEccccccccccccccccEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEccccccHHHHHHHHccEEccccccccccccccccEEEEEEEEccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccc
cccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccEEEEccccEHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEccccccccEEEcEEEEEcccccccccEccccEEEEEccccEEccccEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHcccEEEEEEcHHHHHHHHHHHccEEEEccccccHHHcccccEEEEEEccccEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
mgverifrdeaneekgERARMASFVGAMAIADLVKttlgpkgmdkilqstgrgrevtvtndgATILkslhidnpaAKVLVDIskvqddevgdgTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIkkpggslkdsfldegfildkkigigqpkriENAKILVAntamdtdkvkiYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVnrqliynfpeelfaDAGILAIEHADFDGIERLALVTggeiastfdnpesvklghCKLIEEImigedklihfsgveMGQACTIVLRGASHHVLDEAERSLHDALCVLSqtvndsrvlfgggwpeMVMAKEVDELarktpgkksHAIEAFSRALVAIpttiadnaglDSAELIAQLRAEHqkegcpagidvisgsvgdmaelgiseSFKVKQAVLLSATEAAEMILRVDEIitcaprrredrm
mgverifrdeaneekgerarMASFVGAMAIADLVKTTLGPKGMDKIlqstgrgrevtVTNDGATILKSLHIDNPAAKVLVDISKvqddevgdgTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIqiikkpggslkdSFLDEGFILdkkigigqpkrieNAKIlvantamdtdkvkIYGARVRVDSMSKAaeiegaekqkMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEiastfdnpesvkLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAaemilrvdeiitcaprrredrm
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
**********************SFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV********************VQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD***********HAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA********
**VERIF**************ASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEI************
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA*********AIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA********
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MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
Q4R6F8535 T-complex protein 1 subun N/A no 0.982 0.968 0.693 0.0
P78371535 T-complex protein 1 subun yes no 0.982 0.968 0.693 0.0
P80314535 T-complex protein 1 subun yes no 0.982 0.968 0.693 0.0
Q3ZBH0535 T-complex protein 1 subun yes no 0.982 0.968 0.689 0.0
Q5XIM9535 T-complex protein 1 subun yes no 0.982 0.968 0.693 0.0
Q54ES9532 T-complex protein 1 subun yes no 0.986 0.977 0.644 0.0
Q10147527 Probable T-complex protei yes no 0.984 0.984 0.659 0.0
P39076527 T-complex protein 1 subun yes no 0.979 0.979 0.625 0.0
P47207529 T-complex protein 1 subun yes no 0.979 0.975 0.618 0.0
Q8SQP2508 T-complex protein 1 subun yes no 0.933 0.968 0.470 1e-124
>sp|Q4R6F8|TCPB_MACFA T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3 Back     alignment and function desciption
 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/518 (69%), Positives = 439/518 (84%)

Query: 6   IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATI 65
           IF+  A+EE+ E AR+ SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATI
Sbjct: 11  IFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATI 70

Query: 66  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 125
           LK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+
Sbjct: 71  LKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW 130

Query: 126 RMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 185
           R A + AR+ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RL
Sbjct: 131 REATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL 190

Query: 186 KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVK 245
           KGS NLE+I IIKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+K
Sbjct: 191 KGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIK 250

Query: 246 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGIL 305
           I+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++
Sbjct: 251 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVM 310

Query: 306 AIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQA 365
           AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+A
Sbjct: 311 AIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEA 370

Query: 366 CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 425
           CTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPG
Sbjct: 371 CTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPG 430

Query: 426 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAE 485
           K++ A+E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDMA 
Sbjct: 431 KEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAI 490

Query: 486 LGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRR 523
           LGI+ESF+VK+ VLLSA EAAE+ILRVD II  APR+R
Sbjct: 491 LGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKR 528
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Macaca fascicularis (taxid: 9541)
>sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4 Back     alignment and function description
>sp|P80314|TCPB_MOUSE T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4 Back     alignment and function description
>sp|Q3ZBH0|TCPB_BOVIN T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=1 SV=3 Back     alignment and function description
>sp|Q5XIM9|TCPB_RAT T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3 Back     alignment and function description
>sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1 Back     alignment and function description
>sp|Q10147|TCPB_SCHPO Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct2 PE=3 SV=1 Back     alignment and function description
>sp|P39076|TCPB_YEAST T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT2 PE=1 SV=1 Back     alignment and function description
>sp|P47207|TCPB_CAEEL T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=1 SV=2 Back     alignment and function description
>sp|Q8SQP2|TCPB_ENCCU T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi (strain GB-M1) GN=CCT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
449446604527 PREDICTED: T-complex protein 1 subunit b 1.0 1.0 0.931 0.0
225459806527 PREDICTED: T-complex protein 1 subunit b 1.0 1.0 0.935 0.0
302399079527 TCP domain class transcription factor [M 1.0 1.0 0.931 0.0
449488048534 PREDICTED: T-complex protein 1 subunit b 1.0 0.986 0.919 0.0
356542726527 PREDICTED: T-complex protein 1 subunit b 1.0 1.0 0.922 0.0
356539292527 PREDICTED: T-complex protein 1 subunit b 1.0 1.0 0.922 0.0
357505883527 T-complex protein 1 subunit beta [Medica 1.0 1.0 0.918 0.0
224068705527 predicted protein [Populus trichocarpa] 1.0 1.0 0.905 0.0
357511993527 T-complex protein 1 subunit beta [Medica 1.0 1.0 0.912 0.0
147859190579 hypothetical protein VITISV_013560 [Viti 1.0 0.910 0.851 0.0
>gi|449446604|ref|XP_004141061.1| PREDICTED: T-complex protein 1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/527 (93%), Positives = 514/527 (97%)

Query: 1   MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTN 60
           M V+++ +DEA+EEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGR+VTVTN
Sbjct: 1   MAVDKLLKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTN 60

Query: 61  DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT 120
           DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVA+KIHPMT
Sbjct: 61  DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMT 120

Query: 121 IISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVD 180
           II+G+RMAAECAR+ALLQKVVDNK + E FKSDL+KIAMTTLSSKILSQDKEHF +LAVD
Sbjct: 121 IIAGYRMAAECARNALLQKVVDNKADLEKFKSDLLKIAMTTLSSKILSQDKEHFAKLAVD 180

Query: 181 AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 240
           AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD
Sbjct: 181 AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 240

Query: 241 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFA 300
           TDKVKIYGARVRVDSMSK AEIEGAEK+KMREKV+KII HGINCFVNRQLIYNFPEELFA
Sbjct: 241 TDKVKIYGARVRVDSMSKVAEIEGAEKEKMREKVKKIIGHGINCFVNRQLIYNFPEELFA 300

Query: 301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV 360
           DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG+CKLIEEIMIGEDKLIHFSGV
Sbjct: 301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGYCKLIEEIMIGEDKLIHFSGV 360

Query: 361 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA 420
           EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRV+ GGGWPEM+M+KEVDELA
Sbjct: 361 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVVLGGGWPEMIMSKEVDELA 420

Query: 421 RKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 480
           RKTPGKKSHAIEAFSRAL AIPT IADNAGLDSA+LIAQLRAEH KEGC AGIDVI+GSV
Sbjct: 421 RKTPGKKSHAIEAFSRALQAIPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVITGSV 480

Query: 481 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM 527
           GDMAELGISE+FKVKQA+LLSATEAAEMILRVDEIITCAPRRREDRM
Sbjct: 481 GDMAELGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRRREDRM 527

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459806|ref|XP_002285912.1| PREDICTED: T-complex protein 1 subunit beta [Vitis vinifera] gi|302141688|emb|CBI18891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302399079|gb|ADL36834.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449488048|ref|XP_004157926.1| PREDICTED: T-complex protein 1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356542726|ref|XP_003539816.1| PREDICTED: T-complex protein 1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|356539292|ref|XP_003538133.1| PREDICTED: T-complex protein 1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|357505883|ref|XP_003623230.1| T-complex protein 1 subunit beta [Medicago truncatula] gi|355498245|gb|AES79448.1| T-complex protein 1 subunit beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|224068705|ref|XP_002326179.1| predicted protein [Populus trichocarpa] gi|222833372|gb|EEE71849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357511993|ref|XP_003626285.1| T-complex protein 1 subunit beta [Medicago truncatula] gi|355501300|gb|AES82503.1| T-complex protein 1 subunit beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|147859190|emb|CAN83943.1| hypothetical protein VITISV_013560 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2147132527 AT5G20890 [Arabidopsis thalian 1.0 1.0 0.895 2.2e-249
UNIPROTKB|Q5F424535 CCT2 "Uncharacterized protein" 0.982 0.968 0.706 5.1e-193
UNIPROTKB|E2QSH7535 CCT2 "Uncharacterized protein" 0.982 0.968 0.693 1.1e-190
UNIPROTKB|F6V0D8535 CCT2 "Uncharacterized protein" 0.982 0.968 0.693 1.1e-190
UNIPROTKB|P78371535 CCT2 "T-complex protein 1 subu 0.982 0.968 0.693 1.4e-190
UNIPROTKB|B6V9S9535 CCT2 "Uncharacterized protein" 0.982 0.968 0.693 1.4e-190
UNIPROTKB|D0G0C8535 CCT2 "Chaperonin containing TC 0.982 0.968 0.691 1.8e-190
ZFIN|ZDB-GENE-020419-6535 cct2 "chaperonin containing TC 0.982 0.968 0.689 3.7e-190
MGI|MGI:107186535 Cct2 "chaperonin containing Tc 0.982 0.968 0.693 4.7e-190
UNIPROTKB|Q3ZBH0535 CCT2 "T-complex protein 1 subu 0.982 0.968 0.689 9.8e-190
TAIR|locus:2147132 AT5G20890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2402 (850.6 bits), Expect = 2.2e-249, P = 2.2e-249
 Identities = 472/527 (89%), Positives = 507/527 (96%)

Query:     1 MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTN 60
             M +++IF+D+A+EEKGERARMASFVGAMAI+DLVK+TLGPKGMDKILQSTGRG  VTVTN
Sbjct:     1 MPIDKIFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTN 60

Query:    61 DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT 120
             DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVA+KIHPMT
Sbjct:    61 DGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMT 120

Query:   121 IISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVD 180
             II+G+RMA+ECAR+ALL++V+DNK+NAE F+SDL+KIAMTTL SKILSQDKEHF ++AVD
Sbjct:   121 IIAGYRMASECARNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVD 180

Query:   181 AVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 240
             AV RLKGSTNLE+IQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENA ILVANTAMD
Sbjct:   181 AVFRLKGSTNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMD 240

Query:   241 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFA 300
             TDKVKIYGARVRVDSM+K AEIEGAEK+KM++KV+KII HGINCFVNRQLIYNFPEELFA
Sbjct:   241 TDKVKIYGARVRVDSMTKVAEIEGAEKEKMKDKVKKIIGHGINCFVNRQLIYNFPEELFA 300

Query:   301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV 360
             DAGILAIEHADF+GIERL LVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSG 
Sbjct:   301 DAGILAIEHADFEGIERLGLVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGC 360

Query:   361 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA 420
             EMGQAC+IVLRGASHHVLDEAERSLHDALCVLSQTVND+RVL GGGWPEMVMAKEVDELA
Sbjct:   361 EMGQACSIVLRGASHHVLDEAERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELA 420

Query:   421 RKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 480
             RKT GKKSHAIEAFSRALVAIPTTIADNAGLDSAEL+AQLRAEH  EGC AGIDVI+G+V
Sbjct:   421 RKTAGKKSHAIEAFSRALVAIPTTIADNAGLDSAELVAQLRAEHHTEGCNAGIDVITGAV 480

Query:   481 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM 527
             GDM E GI E+FKVKQAVLLSATEA+EMILRVDEIITCAPRRREDRM
Sbjct:   481 GDMEERGIYEAFKVKQAVLLSATEASEMILRVDEIITCAPRRREDRM 527
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
UNIPROTKB|Q5F424 CCT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSH7 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V0D8 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P78371 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S9 CCT2 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|D0G0C8 CCT2 "Chaperonin containing TCP1, subunit 2 (Beta)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-6 cct2 "chaperonin containing TCP1, subunit 2 (beta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:107186 Cct2 "chaperonin containing Tcp1, subunit 2 (beta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBH0 CCT2 "T-complex protein 1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T8THSB_SULSONo assigned EC number0.35550.96390.9169yesno
Q9V2T4THSB_SULACNo assigned EC number0.360.96580.9204yesno
Q10147TCPB_SCHPONo assigned EC number0.65960.98480.9848yesno
P47207TCPB_CAEELNo assigned EC number0.61800.97910.9754yesno
Q54ES9TCPB_DICDINo assigned EC number0.64420.98670.9774yesno
P48424THSA_THEACNo assigned EC number0.36990.95250.9211yesno
O30561THS1_HALVDNo assigned EC number0.37200.96200.9053yesno
Q3ZBH0TCPB_BOVINNo assigned EC number0.68910.98290.9682yesno
P78371TCPB_HUMANNo assigned EC number0.69300.98290.9682yesno
Q8SQP2TCPB_ENCCUNo assigned EC number0.47070.93350.9685yesno
Q9V2Q7THS_PYRABNo assigned EC number0.37960.94110.9018yesno
P80314TCPB_MOUSENo assigned EC number0.69300.98290.9682yesno
O24735THSB_SULTONo assigned EC number0.36950.95440.9112yesno
O26885THSB_METTHNo assigned EC number0.38260.93540.9163yesno
O57762THS_PYRHONo assigned EC number0.38160.94110.9034yesno
O28821THSB_ARCFUNo assigned EC number0.37540.95820.9266yesno
Q52500THSB_PYRKONo assigned EC number0.38400.94110.9084yesno
Q5XIM9TCPB_RATNo assigned EC number0.69300.98290.9682yesno
Q9YA66THSB_AERPENo assigned EC number0.38210.95250.9160yesno
P50016THS_METKANo assigned EC number0.37960.94110.9100yesno
Q4R6F8TCPB_MACFANo assigned EC number0.69300.98290.9682N/Ano
P39076TCPB_YEASTNo assigned EC number0.62540.97910.9791yesno
Q58405THS_METJANo assigned EC number0.36270.94110.9151yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.0
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 0.0
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-160
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-151
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-148
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-137
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-133
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-130
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-128
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-123
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-123
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-116
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-112
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-103
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 2e-92
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-83
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-79
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 1e-75
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 9e-70
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-62
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 6e-44
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-42
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 3e-16
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 6e-16
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-14
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-13
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 3e-13
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 5e-13
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 6e-13
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 3e-12
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 4e-11
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-10
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-10
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-07
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 4e-05
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-04
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-04
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.002
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
 Score =  966 bits (2500), Expect = 0.0
 Identities = 395/517 (76%), Positives = 450/517 (87%)

Query: 6   IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATI 65
           I +D A EEKGE AR++SFVGA+AI DLVKTTLGPKGMDKILQS GR   VTVTNDGATI
Sbjct: 1   ILKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATI 60

Query: 66  LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 125
           LKS+ +DNPAAKVLVDISKVQDDEVGDGTTSV VLA ELLREAEKLVA KIHP TII G+
Sbjct: 61  LKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGY 120

Query: 126 RMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 185
           RMA   AR+ALL   VD+  + E F+ DL+ IA TTLSSKIL+QDKEHF +LAVDAV+RL
Sbjct: 121 RMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRL 180

Query: 186 KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVK 245
           KGS NL++IQIIKK GGSLKDS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+K
Sbjct: 181 KGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIK 240

Query: 246 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGIL 305
           I+GA+VRVDS +K AEIE AEK+KM+ KV+KI+ HGINCF+NRQLIYN+PE+LFADAGI+
Sbjct: 241 IFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIM 300

Query: 306 AIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQA 365
           AIEHADFDG+ERLALVTGGEIASTFD+PE VKLG CKLIEEIMIGEDKLI FSGV  G+A
Sbjct: 301 AIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEA 360

Query: 366 CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 425
           CTIVLRGAS  +LDEAERSLHDALCVL+QTV D+RV+ GGG  EM+MAK V+ELA+KTPG
Sbjct: 361 CTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPG 420

Query: 426 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAE 485
           KKS AIEAF++AL  +PT IADNAG DSAEL+AQLRA H      AG+D+  G+VGDM E
Sbjct: 421 KKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKE 480

Query: 486 LGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 522
           LGI+ESFKVK+ VLLSA+EAAEMILRVD+II CAPR+
Sbjct: 481 LGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.83
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-114  Score=826.02  Aligned_cols=515  Identities=35%  Similarity=0.561  Sum_probs=497.6

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccCCCCceEEccChHHHhhhccccChHHHHHHHHHhh
Q 009718            6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKV   85 (527)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~   85 (527)
                      +||+|++..+|.-++-+|+.||..+++.++|||||+|+||+|++..  |+++|||||+||||-|++.||+|+.|++++++
T Consensus         8 ~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~--g~~tIsNDGATIlKlldivhPaaktlVdia~s   85 (543)
T KOG0361|consen    8 LLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSK--GKTTISNDGATILKLLDIVHPAAKTLVDIARS   85 (543)
T ss_pred             EeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCC--CcEEEecCcHHHHHHHhhcChhHHHHHHHHhh
Confidence            6799999999999999999999999999999999999999999997  99999999999999999999999999999999


Q ss_pred             hhcccCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCc-hhhhHHHHHHHHHHhhcc
Q 009718           86 QDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKEN-AETFKSDLMKIAMTTLSS  164 (527)
Q Consensus        86 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~-~~~~~~~l~~i~~t~l~s  164 (527)
                      ||.++||||||||+|++++|+++..+++.|+||..|+++|+.|...|++.++++++.++.. ...-++.|++++.|+++|
T Consensus        86 QDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsS  165 (543)
T KOG0361|consen   86 QDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSS  165 (543)
T ss_pred             ccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999988743 233467899999999999


Q ss_pred             cccchhhhHHHHHHHHHHHhhccCCCcccceeEEeCCCCCCCceeeeeEEEeccCCCC----CCccccCcceEEeeeccc
Q 009718          165 KILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG----QPKRIENAKILVANTAMD  240 (527)
Q Consensus       165 K~~~~~~~~l~~li~~a~~~~~~~~~~~~I~i~~~~g~~~~dS~l~~Givl~~~~~~~----~~~~~~n~~Ill~~~~Le  240 (527)
                      |.+.++.++|+++++||+..++...+++.|-|.|++||+++||.+++|+.|++.|+|.    +|+++.||||+++|..||
T Consensus       166 KlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELE  245 (543)
T KOG0361|consen  166 KLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELE  245 (543)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeee
Confidence            9999999999999999999998888889999999999999999999999999999864    799999999999999999


Q ss_pred             cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCccCCchHHHHHHHcCCeEEecCChhhHHHHHH
Q 009718          241 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL  320 (527)
Q Consensus       241 ~~~~~~~~~~i~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lvl~~~~I~~~~~~~l~~~~I~~i~~v~~~~L~~la~  320 (527)
                      .. .+..++++.+.++++++...++||+.+++++++|.+.|+++|++...|.|++.+||++++|+|..||+.+||.|+..
T Consensus       246 lK-aEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~  324 (543)
T KOG0361|consen  246 LK-AEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQ  324 (543)
T ss_pred             ec-ccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHH
Confidence            84 45556999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCccccccCCCCCCCCcccceEEEEEEcCeEEEEEecCCCCceeEEeecCCcHhHHHHHHHHHHHHHHHHHHHhhCCc
Q 009718          321 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR  400 (527)
Q Consensus       321 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~  400 (527)
                      ++|+++.++..++.+..+|.|..|++..+|++||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++++..
T Consensus       325 acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~  404 (543)
T KOG0361|consen  325 ACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS  404 (543)
T ss_pred             hcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCcceEEccCCcc
Q 009718          401 VLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV  480 (527)
Q Consensus       401 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~  480 (527)
                      ||+|||++||+++++|++|+..+.+++|+.+.+|++|||.|||+||+|+|+|..+++.+||..|++|..|+|+|.+++.+
T Consensus       405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i  484 (543)
T KOG0361|consen  405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI  484 (543)
T ss_pred             EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcccchHHHHHHHHHHHHHHHHHHhHhHHhhcCCCCC
Q 009718          481 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRR  523 (527)
Q Consensus       481 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~iD~iI~~~~~~~  523 (527)
                      .|+++.+||||..||++++..|+|+||+||.+|+.|++++.++
T Consensus       485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~  527 (543)
T KOG0361|consen  485 ADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQS  527 (543)
T ss_pred             hhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccC
Confidence            9999999999999999999999999999999999999977543

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 0.0
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-89
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-88
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-87
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 4e-87
1a6d_A545 Thermosome From T. Acidophilum Length = 545 6e-85
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-82
1a6d_B543 Thermosome From T. Acidophilum Length = 543 2e-81
3izh_A513 Mm-Cpn D386a With Atp Length = 513 3e-81
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 3e-81
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 1e-80
3izi_A513 Mm-Cpn Rls With Atp Length = 513 1e-80
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-80
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 6e-78
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-77
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 3e-77
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 8e-77
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-76
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-76
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-75
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-73
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-71
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 5e-71
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-65
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-60
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-55
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-48
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-42
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-40
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-30
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-22
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 9e-18
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 5e-13
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-07
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 7e-12
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 2e-11
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 3e-11
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 2e-10
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 2e-10
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 2e-10
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 2e-10
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 3e-10
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 3e-10
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 3e-10
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 5e-10
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 3e-09
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 3e-09
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 3e-09
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 3e-09
1ss8_A524 Groel Length = 524 3e-09
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 3e-09
1oel_A547 Conformational Variability In The Refined Structure 3e-09
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/511 (69%), Positives = 434/511 (84%)
Query: 11  ANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLH 70
           A+EE+ E AR++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ 
Sbjct: 3   ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIG 62
Query: 71  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
           +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A +
Sbjct: 63  VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATK 122
Query: 131 CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN 190
            AR ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS N
Sbjct: 123 AARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGN 182
Query: 191 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
           LE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+R
Sbjct: 183 LEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSR 242
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
           VRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHA
Sbjct: 243 VRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHA 302
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
           DF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVL
Sbjct: 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
           RGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVA 422
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 490
           +E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDM+ LGI+E
Sbjct: 423 MESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITE 482
Query: 491 SFKVKQAVLLSATEAAEMILRVDEIITCAPR 521
           SF+VK+ VLLSA EAAE+ILRVD II  APR
Sbjct: 483 SFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-178
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-176
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-167
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-159
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 2e-34
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 2e-26
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 6e-14
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 8e-14
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-13
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-05
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
 Score =  746 bits (1929), Expect = 0.0
 Identities = 354/511 (69%), Positives = 434/511 (84%)

Query: 11  ANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLH 70
           A+EE+ E AR++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ 
Sbjct: 3   ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIG 62

Query: 71  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
           +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A +
Sbjct: 63  VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATK 122

Query: 131 CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN 190
            AR ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS N
Sbjct: 123 AARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGN 182

Query: 191 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
           LE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+R
Sbjct: 183 LEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSR 242

Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
           VRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHA
Sbjct: 243 VRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHA 302

Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
           DF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVL
Sbjct: 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362

Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
           RGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVA 422

Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 490
           +E++++AL  +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDM+ LGI+E
Sbjct: 423 MESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITE 482

Query: 491 SFKVKQAVLLSATEAAEMILRVDEIITCAPR 521
           SF+VK+ VLLSA EAAE+ILRVD II  APR
Sbjct: 483 SFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 98.32
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 98.25
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 98.09
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
Probab=100.00  E-value=1e-114  Score=924.13  Aligned_cols=510  Identities=69%  Similarity=1.062  Sum_probs=490.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCccccccccccCCC--CceEEccChHHHhhhccccChHHHHHHHHHhhhh
Q 009718           10 EANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD   87 (527)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~   87 (527)
                      +++.++|.++|.+|+.||+.|+++|||||||+||+|||+++  .  |+++|||||+|||++|+++||+|+|++++|++||
T Consensus         2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~--~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd   79 (513)
T 3iyg_B            2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSS--GRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQD   79 (513)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecC--CCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhh
Confidence            56788999999999999999999999999999999999997  5  8999999999999999999999999999999999


Q ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHhhccccc
Q 009718           88 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL  167 (527)
Q Consensus        88 ~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~i~~t~l~sK~~  167 (527)
                      +++||||||+++||++||+++.+++.+|+||+.|++||+.|++.+++.|+++++|++.+.+.+++.|.++++|+++||+.
T Consensus        80 ~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~  159 (513)
T 3iyg_B           80 DEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLL  159 (513)
T ss_pred             hhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999998733212367899999999999999


Q ss_pred             chhhhHHHHHHHHHHHhhccCCCcccceeEEeCCCCCCCceeeeeEEEeccCCCCCCccccCcceEEeeecccccccccc
Q 009718          168 SQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIY  247 (527)
Q Consensus       168 ~~~~~~l~~li~~a~~~~~~~~~~~~I~i~~~~g~~~~dS~l~~Givl~~~~~~~~~~~~~n~~Ill~~~~Le~~~~~~~  247 (527)
                      ++++++|++|+++|+.++++++|++.|+|+++.||+..||++++|++|++++.+.||+.++||||++++++|++++++..
T Consensus       160 ~~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~k~e~~  239 (513)
T 3iyg_B          160 THHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIF  239 (513)
T ss_pred             ccchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCccccccccc
Confidence            99999999999999999998888899999999999999999999999999987679999999999999999999998833


Q ss_pred             CeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCccCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCccc
Q 009718          248 GARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIA  327 (527)
Q Consensus       248 ~~~i~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lvl~~~~I~~~~~~~l~~~~I~~i~~v~~~~L~~la~~tGa~ii  327 (527)
                      ++++.+++++++.++.+.|+++++.++++|++.|++||+++++|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus       240 ~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii  319 (513)
T 3iyg_B          240 GSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIA  319 (513)
T ss_pred             CCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEEe
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcccceEEEEEEcCeEEEEEecCCCCceeEEeecCCcHhHHHHHHHHHHHHHHHHHHHhhCCccccCCCh
Q 009718          328 STFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGW  407 (527)
Q Consensus       328 ~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~  407 (527)
                      ++++++++.++|+|+.|++..+|+++|++|+||+++++|||+|||+|+.+++|+||+++||++++|++++++++|||||+
T Consensus       320 ~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa  399 (513)
T 3iyg_B          320 STFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGC  399 (513)
T ss_pred             cccccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCcceEEccCCcccccccCC
Q 009718          408 PEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELG  487 (527)
Q Consensus       408 ~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~g  487 (527)
                      +|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|||+.+|++.||++.|
T Consensus       400 ~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~g  479 (513)
T 3iyg_B          400 SEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLG  479 (513)
T ss_pred             HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhcc
Confidence            99999999999999899999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Q 009718          488 ISESFKVKQAVLLSATEAAEMILRVDEIITCAPR  521 (527)
Q Consensus       488 I~dp~~vk~~~l~~A~~~a~~iL~iD~iI~~~~~  521 (527)
                      ||||+.||+++|+.|+|+|++|||||++|...|+
T Consensus       480 I~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~  513 (513)
T 3iyg_B          480 ITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR  513 (513)
T ss_pred             CEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999998774
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 527
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-34
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-29
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 2e-32
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 3e-32
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 5e-32
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 6e-32
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 4e-29
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-27
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 5e-28
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-17
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-23
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 4e-20
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 9e-05
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-18
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-17
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 6e-17
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 6e-07
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  128 bits (323), Expect = 1e-34
 Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 5/207 (2%)

Query: 14  EKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDN 73
           E+G+ A+  +   A AIAD V+TTLGPKGMDK+L       ++ ++NDGATILK + +++
Sbjct: 2   EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVD--SIGDIIISNDGATILKEMDVEH 59

Query: 74  PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 133
           P AK++V++SK QD  VGDGTT+ VVL+GELL++AE L+   +HP  I +G+R+A   AR
Sbjct: 60  PTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEAR 119

Query: 134 DALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDK---EHFGQLAVDAVMRLKGSTN 190
             + +    +           + + +   ++ +  +++   E F +        L  +  
Sbjct: 120 KIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAG 179

Query: 191 LESIQIIKKPGGSLKDSFLDEGFILDK 217
           ++ I  + K     +   +  G  LD 
Sbjct: 180 IDPINTLIKLKADDEKGRISVGVDLDN 206
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.98
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.98
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.94
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.5
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.49
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.4
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 98.29
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 98.21
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.15
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 98.14
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 96.06
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 93.05
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 92.25
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 90.87
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.38
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 82.03
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=1.7e-54  Score=414.75  Aligned_cols=242  Identities=41%  Similarity=0.660  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCccccccccccCCCCceEEccChHHHhhhccccChHHHHHHHHHhhhhcccCCChhHH
Q 009718           18 RARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSV   97 (527)
Q Consensus        18 ~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~   97 (527)
                      +++..|++||+.++++|++||||+|++|||+++.  |++++||||+||++++.++||+++++++++++|++++||||||+
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~--g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~   79 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSL--GDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTA   79 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTT--CCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCC--CCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcch
Confidence            7899999999999999999999999999999997  99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHhhcccccchhhhHHHHH
Q 009718           98 VVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL  177 (527)
Q Consensus        98 vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~l~~l  177 (527)
                      ++|+++||+++.+++..|+||..|++||+.|++.+++.|++++.++...                               
T Consensus        80 ~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~-------------------------------  128 (243)
T d1a6db1          80 VIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYA-------------------------------  128 (243)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEE-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccc-------------------------------
Confidence            9999999999999999999999999999999999999887766553321                               


Q ss_pred             HHHHHHhhccCCCcccceeEEeCCCCCCCceeeeeEEEeccCCCCCCccccCcceEEeeeccccccccccCeEEEEcCHH
Q 009718          178 AVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMS  257 (527)
Q Consensus       178 i~~a~~~~~~~~~~~~I~i~~~~g~~~~dS~l~~Givl~~~~~~~~~~~~~n~~Ill~~~~Le~~~~~~~~~~i~i~~~~  257 (527)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCccCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCccccccCCCCCCC
Q 009718          258 KAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVK  337 (527)
Q Consensus       258 ~l~~l~~~e~~~l~~~~~~I~~~~v~lvl~~~~I~~~~~~~l~~~~I~~i~~v~~~~L~~la~~tGa~ii~~~~~l~~~~  337 (527)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccceEEEEEEcCeEEEEEecCCCCceeEEeecCCcHhHHHHHHHHHHHHHHHHHHHhhCCccccCCChHHHHHHHHHH
Q 009718          338 LGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD  417 (527)
Q Consensus       338 lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~  417 (527)
                                                                                       ||||++|+++|..|+
T Consensus       129 -----------------------------------------------------------------~ggGa~e~~~a~~l~  143 (243)
T d1a6db1         129 -----------------------------------------------------------------AGGGATAAEIAFRLR  143 (243)
T ss_dssp             -----------------------------------------------------------------ETTTHHHHHHHHHHH
T ss_pred             -----------------------------------------------------------------cCCCchhHHHHHHHh
Confidence                                                                             069999999999999


Q ss_pred             HHHhcCCChhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCcceEEccCCcccccccCCcccchHHHHH
Q 009718          418 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQA  497 (527)
Q Consensus       418 ~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~  497 (527)
                      .+++++++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||.+.|||||+.||++
T Consensus       144 ~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~  223 (243)
T d1a6db1         144 SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQ  223 (243)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHH
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhHHhh
Q 009718          498 VLLSATEAAEMILRVDEIIT  517 (527)
Q Consensus       498 ~l~~A~~~a~~iL~iD~iI~  517 (527)
                      +|+.|+|+|++|||||++|.
T Consensus       224 ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         224 AIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure