Citrus Sinensis ID: 009727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
MRHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFGEIKHL
cHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEEEccHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccccEEEEEEEEEcccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccHHccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
ccHEEEEEEEEEccccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHEEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHHccccEEEEEEEEEccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHcHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccc
MRHIVLVSLLLLLVSRETSSSIQEDFMHCmstqfgeytrSFEIIFNQDSSLYSYILQSsvqnprylnattpkplliitpfhesEIQAAVFcsknhdlqirvrsgghdyeglsylcrtpfiIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLvhgfpaglcptvgigghlggggfGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAirggggssfGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHvgngdqktiHANFNslflgkidrliplmnqsfpelglraedctemsWVESTVYFagfskgsplEMLLDKKQLFKSMFKAksdfvtepipfhaLEGIWGRLLEEEMAIMImdpfggkmneilesevpfphrngvlYNIQYMVKWEAngvmasnrHIHWIRSLYKYmapyvsrspraayinyrdldlgtnklqnaSYSEAAAWGIKYFKSNFKRLALVKskvdpgnffrneqsippfgeikhl
MRHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSkvdpgnffrneqsippfgeikhl
MRHIvlvslllllvsRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVgigghlggggfgtllrkygLAADQVVDAYLIDVNGRILDRRAMGEDLFWAirggggssfgiilsWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFGEIKHL
**HIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFF***************
*RHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPF******
MRHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFGEIKHL
MRHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFG*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFGEIKHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.952 0.921 0.483 1e-140
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.952 0.921 0.481 1e-138
A6P6W1545 Cannabidiolic acid syntha N/A no 0.943 0.911 0.480 1e-137
A6P6W0545 Cannabidiolic acid syntha N/A no 0.943 0.911 0.478 1e-137
A6P6V9544 Cannabidiolic acid syntha N/A no 0.950 0.920 0.473 1e-136
Q9SVG4570 Reticuline oxidase-like p no no 0.948 0.877 0.444 1e-123
P30986538 Reticuline oxidase OS=Esc N/A no 0.907 0.888 0.441 1e-103
P93479535 Reticuline oxidase OS=Pap N/A no 0.914 0.900 0.419 1e-100
O06997447 Uncharacterized FAD-linke yes no 0.770 0.908 0.303 2e-25
Q796Y5451 Uncharacterized FAD-linke no no 0.768 0.898 0.258 2e-20
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/517 (48%), Positives = 353/517 (68%), Gaps = 15/517 (2%)

Query: 23  QEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHE 82
           +E+F+ C S        + ++++ Q   LY  IL S++QN R+++ TTPKPL+I+TP + 
Sbjct: 31  RENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 90

Query: 83  SEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQ 142
           S IQA + CSK   LQIR RSGGHD EG+SY+ + PF+++DL NM SI+I++  +TAWV+
Sbjct: 91  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 150

Query: 143 SGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLI 202
           +GA LGE+YY +  K+    FP G CPTVG+GGH  GGG+G L+R YGLAAD ++DA+L+
Sbjct: 151 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 210

Query: 203 DVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLE-QGAL 261
           +V+G++LDR++MGEDLFWAIRGGGG +FGII +WKIKLV VP   T F+V K +E  G +
Sbjct: 211 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 270

Query: 262 ELVHRWQYIAPKFHEDL-----FIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQ 316
           +L ++WQ IA K+ +DL     FI   I      ++ T+H  F+S+F G +D L+ LMN+
Sbjct: 271 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 330

Query: 317 SFPELGLRAEDCTEMSWVESTVYFAGF----SKGSPLEMLLDKKQLFKSMFKAKSDFVTE 372
           SFPELG++  DC E SW+++T++++G     +     E+LLD+    K+ F  K D+V +
Sbjct: 331 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKK 390

Query: 373 PIPFHALEGIWGRLLEEEM--AIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWE 430
           PIP  A+  I  +L EE++   + ++ P+GG M EI ES +PFPHR G++Y + Y   WE
Sbjct: 391 PIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 450

Query: 431 ANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLG-TNKLQNASYSEAAAWGI 489
                 + +HI+W+RS+Y +  PYVS++PR AY+NYRDLDLG TN     +Y++A  WG 
Sbjct: 451 KQE--DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGE 508

Query: 490 KYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFGEIKH 526
           KYF  NF RL  VK+KVDP NFFRNEQSIPP     H
Sbjct: 509 KYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHHH 545
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
224122406534 predicted protein [Populus trichocarpa] 0.982 0.970 0.731 0.0
255564341525 Reticuline oxidase precursor, putative [ 0.990 0.994 0.695 0.0
359483728 780 PREDICTED: reticuline oxidase-like prote 0.986 0.666 0.663 0.0
357455991526 FAD-linked oxidoreductase [Medicago trun 0.981 0.982 0.636 0.0
357455997526 FAD-linked oxidoreductase [Medicago trun 0.981 0.982 0.624 0.0
357456007590 FAD-linked oxidoreductase [Medicago trun 0.990 0.884 0.626 0.0
351721585529 FAD-linked oxidoreductase 2 precursor [G 0.969 0.965 0.623 0.0
356515398529 PREDICTED: reticuline oxidase-like prote 0.981 0.977 0.624 0.0
351721160528 FAD-linked oxidoreductase 1 precursor [G 0.965 0.964 0.621 0.0
356508171528 PREDICTED: reticuline oxidase-like prote 0.967 0.965 0.613 0.0
>gi|224122406|ref|XP_002330615.1| predicted protein [Populus trichocarpa] gi|222872173|gb|EEF09304.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/522 (73%), Positives = 437/522 (83%), Gaps = 4/522 (0%)

Query: 1   MRHIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSV 60
           M HIVLVSLLL +     SS I E+F+ CMST+F  YT+SF+ IF   S LYSYILQSS 
Sbjct: 10  MNHIVLVSLLLSVSWATYSSKIHENFIQCMSTEFNAYTKSFQTIFTPQSPLYSYILQSSK 69

Query: 61  QNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFI 120
           QN R+LN+T+ KP LIITPFHESEIQA + CSK    Q+RVRSGGHDYEGLS+LC+TPFI
Sbjct: 70  QNLRWLNSTS-KPHLIITPFHESEIQAVILCSKKQGFQVRVRSGGHDYEGLSFLCKTPFI 128

Query: 121 IIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGG 180
           IIDL+N+R IEI++EDETAWVQ+GA LGELYYA+A +S+VHGFPAGLCPTVG+GGH  GG
Sbjct: 129 IIDLVNLRGIEIDIEDETAWVQTGATLGELYYAIAKRSIVHGFPAGLCPTVGVGGHFTGG 188

Query: 181 GFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKL 240
           GFG LLRKYGLAAD V+DAYLIDVNGRILDR+ MGEDLFWAIRGGGG+SFGIILSWKIKL
Sbjct: 189 GFGILLRKYGLAADNVIDAYLIDVNGRILDRQGMGEDLFWAIRGGGGASFGIILSWKIKL 248

Query: 241 VRVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVG---NGDQKTIHA 297
           +RVP TVT FTV KT+EQGA +LVHRWQYIA K HEDLFIRI+I +VG     ++KT+ A
Sbjct: 249 IRVPPTVTVFTVPKTIEQGATKLVHRWQYIAGKLHEDLFIRIVIQNVGGESTSNKKTVEA 308

Query: 298 NFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQ 357
           +FNSLFLG IDRLI LMN SFPELGL  E+CTEMSW+ESTVYFAGF KGSPLE+LLDK Q
Sbjct: 309 SFNSLFLGGIDRLITLMNDSFPELGLVPENCTEMSWIESTVYFAGFQKGSPLEVLLDKTQ 368

Query: 358 LFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRN 417
           L+K+ FKAKSDFVTEPIP   LEGIW R LEE +  MIMDPFGG+MNEI ES +PFPHR 
Sbjct: 369 LYKAKFKAKSDFVTEPIPEFGLEGIWERFLEEGLVFMIMDPFGGRMNEIPESHIPFPHRE 428

Query: 418 GVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQ 477
           G LYNIQY+VKW+ +   A+++H++WI+ LY+YM PYVSRSPRAAY+NYRDLDLG NK  
Sbjct: 429 GNLYNIQYLVKWDEDEARATHKHVNWIKMLYRYMKPYVSRSPRAAYLNYRDLDLGINKHA 488

Query: 478 NASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIP 519
           N SYSEA  WG+KYFK NFKRL  VKSKVD  NFFR+EQSIP
Sbjct: 489 NTSYSEARDWGMKYFKGNFKRLVQVKSKVDSENFFRSEQSIP 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564341|ref|XP_002523167.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537574|gb|EEF39198.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483728|ref|XP_002267029.2| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357455991|ref|XP_003598276.1| FAD-linked oxidoreductase [Medicago truncatula] gi|355487324|gb|AES68527.1| FAD-linked oxidoreductase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357455997|ref|XP_003598279.1| FAD-linked oxidoreductase [Medicago truncatula] gi|355487327|gb|AES68530.1| FAD-linked oxidoreductase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357456007|ref|XP_003598284.1| FAD-linked oxidoreductase [Medicago truncatula] gi|355487332|gb|AES68535.1| FAD-linked oxidoreductase [Medicago truncatula] Back     alignment and taxonomy information
>gi|351721585|ref|NP_001237470.1| FAD-linked oxidoreductase 2 precursor [Glycine max] gi|83728526|gb|ABC41951.1| FAD-linked oxidoreductase 2 [Glycine max] Back     alignment and taxonomy information
>gi|356515398|ref|XP_003526387.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|351721160|ref|NP_001237456.1| FAD-linked oxidoreductase 1 precursor [Glycine max] gi|83728524|gb|ABC41950.1| FAD-linked oxidoreductase 1 [Glycine max] Back     alignment and taxonomy information
>gi|356508171|ref|XP_003522833.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.946 0.937 0.529 3.1e-138
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.950 0.945 0.511 4e-138
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.952 0.934 0.492 1e-130
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.941 0.932 0.472 4e-129
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.950 0.926 0.475 7.8e-126
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.939 0.926 0.465 1.6e-125
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.950 0.924 0.469 2.4e-124
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.933 0.924 0.448 1.2e-120
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.937 0.926 0.445 6.9e-118
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.920 0.906 0.450 1e-116
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
 Identities = 271/512 (52%), Positives = 339/512 (66%)

Query:    17 ETSSSIQED-FMHCMSTQF-GEYTRSFEIIFNQDSSLYSYILQSSV-QNPRYL--NATTP 71
             ++SSS  +D F+ CMST     +      I   DS +Y+   QS + QN R+L  N T+ 
Sbjct:    23 DSSSSPSKDQFLSCMSTHSDSSFINPKSFIHKPDSRVYTDFSQSLISQNYRFLTLNFTSQ 82

Query:    72 KPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLC-RTPFIIIDLINMRSI 130
             KP+LI+TP  ++EIQ ++ CS+   +++R +SGGHDYEGLSYL   +PFII+DL+N+RSI
Sbjct:    83 KPILIVTPRTDTEIQRSLLCSRKLGVKVRTKSGGHDYEGLSYLSLHSPFIILDLVNVRSI 142

Query:   131 EINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXXX 190
             EINL DETAWV +GA +GELYY +A  S +HGFPAG CP+V                   
Sbjct:   143 EINLADETAWVGAGATIGELYYKIAKSSKIHGFPAGTCPSVGVGGHFSGGGFGAMMRKHG 202

Query:   191 LAADQVVDAYLIDVNGRILD-RRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPETVTS 249
             LAAD VVDA  +D NGRI + RR MGEDLFWA              WK+KLVRVPE VT 
Sbjct:   203 LAADNVVDARFVDANGRIYNSRREMGEDLFWAIRGGGAASFGVVLSWKVKLVRVPEKVTC 262

Query:   250 FTVLKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDR 309
             F     L Q   ++VHRWQ IA +  ++LFIR+++   G   Q T  AN+    LG ID+
Sbjct:   263 FRRNLPLTQNMTKIVHRWQQIAAELDDNLFIRVIVSISGGSVQTTFQANY----LGGIDK 318

Query:   310 LIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSM-FKAKSD 368
             LIPLMNQ FPELGL  +DC+EM+W++S +YF  + KG PLE LLD+ Q +  + FKAKSD
Sbjct:   319 LIPLMNQKFPELGLTFQDCSEMTWIDSIMYF-NWKKGQPLETLLDRGQRYNDLYFKAKSD 377

Query:   369 FVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVK 428
             FV  PIP   LEGIW R  E E  IMIM+P GGKM EI E+E PFPHR G LYNIQYMVK
Sbjct:   378 FVKNPIPEIGLEGIWTRFHEVESPIMIMEPLGGKMYEIGETETPFPHRRGNLYNIQYMVK 437

Query:   429 WEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWG 488
             W    +    +H+ W+R LY+YM  YVS SPR AY+NYRDLDLG N+  N S+ +A  WG
Sbjct:   438 WRLKDIGVMEKHVTWMRLLYRYMRVYVSASPRGAYLNYRDLDLGMNRGVNTSFEDAKLWG 497

Query:   489 IKYFKSNFKRLALVKSKVDPGNFFRNEQSIPP 520
              +YF SNFKRLA+VK K+DP NFFRNEQS+PP
Sbjct:   498 FRYFGSNFKRLAIVKGKIDPTNFFRNEQSVPP 529
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-29
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-23
pfam0803145 pfam08031, BBE, Berberine and berberine like 2e-18
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 3e-06
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  111 bits (280), Expect = 4e-29
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 73  PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINM-RSIE 131
           P  ++ P  E E+ A V  +  + L + VR GG    G +    T  +++DL  +   +E
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDA--VLTGGVVLDLSRLNGILE 58

Query: 132 INLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL 191
           I+ ED TA V++G  LG+L  ALA K L+ G   G      +GG +   G G    +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 192 AADQVVDAYLIDVNGRILD 210
             D V+   ++  +G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.98
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.93
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.88
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.82
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.76
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.71
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.7
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.68
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.64
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.57
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.52
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.26
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.4
PRK09799258 putative oxidoreductase; Provisional 94.92
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.64
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.95
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 93.35
PLN00107257 FAD-dependent oxidoreductase; Provisional 93.23
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 92.38
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 92.0
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 89.66
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 87.51
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 85.95
PLN02906 1319 xanthine dehydrogenase 85.22
PLN00192 1344 aldehyde oxidase 84.83
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 83.58
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 80.39
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=4.6e-39  Score=341.61  Aligned_cols=200  Identities=20%  Similarity=0.253  Sum_probs=173.1

Q ss_pred             CccCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCC------e-EEcC
Q 009727           64 RYLNATTPKPLLIITPFHESEIQAAVFCSK--NHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRS------I-EINL  134 (527)
Q Consensus        64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~--~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~------i-~~d~  134 (527)
                      .|.......|.+|++|+|++||+++|++|+  +++++|.+||+|||+.|.+...  +|++|||++||+      + ++|.
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~--~GivIdms~Ln~i~~~~~ii~vd~  133 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP--GGVVVDMRSLRGGVRGPPVIVVSG  133 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC--CeEEEECCCCCCcCccCceEEEcC
Confidence            577777789999999999999999999997  6799999999999999887653  489999999999      4 7899


Q ss_pred             CCCEEEEcCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-ccc
Q 009727          135 EDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRA  213 (527)
Q Consensus       135 ~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~  213 (527)
                      +..+|+|++|++|.||.+++.++|+. ....+.+..++|||.+++||.|..+.+||..+|+|+++|||++||++++ +..
T Consensus       134 ~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~  212 (525)
T PLN02441        134 DGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPT  212 (525)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCC
Confidence            99999999999999999999999852 1224666788999999999999999999999999999999999999998 667


Q ss_pred             CChhhhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHH
Q 009727          214 MGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRW  267 (527)
Q Consensus       214 ~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (527)
                      +|+|||||++|| +|+|||||+++||++|+|+.+.++.+.+...+++.+.++.+
T Consensus       213 ~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l  265 (525)
T PLN02441        213 QNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL  265 (525)
T ss_pred             CChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence            799999999998 89999999999999999997766666665444444444443

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-130
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-122
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-115
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 8e-99
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 8e-99
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-98
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-98
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 4e-97
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-97
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 6e-97
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-17
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 5e-14
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 8e-11
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-10
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 4e-06
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-05
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 3e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  461 bits (1185), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/512 (44%), Positives = 325/512 (63%), Gaps = 15/512 (2%)
Query: 23  QEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHE 82
           +E+F+ C S        + ++++ Q   LY  IL S++QN R+++ TTPKPL+I+TP + 
Sbjct: 4   RENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 83  SEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQ 142
           S IQA + CSK   LQIR RSGGHD EG+SY+ + PF+++DL NM SI+I++  +TAWV+
Sbjct: 64  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 123
Query: 143 SGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLI 202
           +GA LGE+YY +  K+    FP G CPTV                   LAAD ++DA+L+
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 203 DVNGRILDRRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGAL 261
           +V+G++LDR++MGEDLFWA              WKIKLV VP   T F+V K +E  G +
Sbjct: 184 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243
Query: 262 ELVHRWQYIAPKFHEDL-----FIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQ 316
           +L ++WQ IA K+ +DL     FI   I      ++ T+H  F+S+F G +D L+ LMN+
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303
Query: 317 SFPELGLRAEDCTEMSWVESTVYFAGF----SKGSPLEMLLDKKQLFKSMFKAKSDFVTE 372
           SFPELG++  DC E SW+++T++++G     +     E+LLD+    K+ F  K D+V +
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKK 363
Query: 373 PIPFHALEGIWGRLLEEEM--AIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWE 430
           PIP  A+  I  +L EE++   + ++ P+GG M EI ES +PFPHR G++Y + Y   WE
Sbjct: 364 PIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 431 ANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLG-TNKLQNASYSEAAAWGI 489
                 + +HI+W+RS+Y +  PYVS++PR AY+NYRDLDLG TN     +Y++A  WG 
Sbjct: 424 KQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGE 481
Query: 490 KYFKSNFKRLALVKSKVDPGNFFRNEQSIPPF 521
           KYF  NF RL  VK+KVDP NFFRNEQSIPP 
Sbjct: 482 KYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-172
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-172
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-171
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-170
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-170
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-167
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-118
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-46
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 6e-36
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-20
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 4e-18
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 4e-13
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-10
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 5e-08
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 8e-07
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 1e-05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  585 bits (1510), Expect = 0.0
 Identities = 245/514 (47%), Positives = 349/514 (67%), Gaps = 15/514 (2%)

Query: 20  SSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITP 79
           ++ +E+F+ C S        + ++++ Q   LY  IL S++QN R+++ TTPKPL+I+TP
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 80  FHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETA 139
            + S IQA + CSK   LQIR RSGGHD EG+SY+ + PF+++DL NM SI+I++  +TA
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120

Query: 140 WVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDA 199
           WV++GA LGE+YY +  K+    FP G CPTVG+GGH  GGG+G L+R YGLAAD ++DA
Sbjct: 121 WVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDA 180

Query: 200 YLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLE-Q 258
           +L++V+G++LDR++MGEDLFWAIRGGGG +FGII +WKIKLV VP   T F+V K +E  
Sbjct: 181 HLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH 240

Query: 259 GALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQ-----KTIHANFNSLFLGKIDRLIPL 313
           G ++L ++WQ IA K+ +DL +    +     D       T+H  F+S+F G +D L+ L
Sbjct: 241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDL 300

Query: 314 MNQSFPELGLRAEDCTEMSWVESTVYFAGF----SKGSPLEMLLDKKQLFKSMFKAKSDF 369
           MN+SFPELG++  DC E SW+++T++++G     +     E+LLD+    K+ F  K D+
Sbjct: 301 MNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDY 360

Query: 370 VTEPIPFHALEGIWGRLLEEE--MAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMV 427
           V +PIP  A+  I  +L EE+    + ++ P+GG M EI ES +PFPHR G++Y + Y  
Sbjct: 361 VKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTA 420

Query: 428 KWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQ-NASYSEAAA 486
            WE      + +HI+W+RS+Y +  PYVS++PR AY+NYRDLDLG        +Y++A  
Sbjct: 421 SWEKQE--DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478

Query: 487 WGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPP 520
           WG KYF  NF RL  VK+KVDP NFFRNEQSIPP
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.88
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.24
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.53
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.3
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.57
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.48
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.51
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 88.98
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 83.27
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=8.4e-90  Score=737.61  Aligned_cols=502  Identities=49%  Similarity=0.950  Sum_probs=433.5

Q ss_pred             CchhhHHHhhhhccCCCCCCcceEecCCCcchhHHHhhcccCcCccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEE
Q 009727           21 SIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIR  100 (527)
Q Consensus        21 ~~~~~~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~  100 (527)
                      .+.++|.+||+....++.++++.|++|+|+.|++++.++++|.||+.....+|.+||+|+|++||+++|++|+++++|+.
T Consensus         2 ~~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             CHHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             ChhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            46789999999987777788899999999999999888999999999888999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccC
Q 009727          101 VRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGG  180 (527)
Q Consensus       101 v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~gg  180 (527)
                      |||||||+.+.+...+.++++|||++||+|++|++.++|+||||+++++|+++|.++|+++.+++|.|+++||||+++||
T Consensus        82 vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gG  161 (518)
T 3vte_A           82 TRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGG  161 (518)
T ss_dssp             EESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTC
T ss_pred             EECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCC
Confidence            99999999987643444699999999999999999999999999999999999999887788999999999999999999


Q ss_pred             cCCCccccccccccceeEEEEEeeCCeEeecccCChhhhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEecch-hh
Q 009727          181 GFGTLLRKYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLE-QG  259 (527)
Q Consensus       181 g~g~~~~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~~-~~  259 (527)
                      |+|+++++||+++|+|+++|||++||++++.+.+++|||||+|||++|+|||||+++||++|.|+.+..|.+.+... ++
T Consensus       162 g~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~  241 (518)
T 3vte_A          162 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG  241 (518)
T ss_dssp             CCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHH
T ss_pred             CCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHH
Confidence            99999999999999999999999999999855568999999999867899999999999999999888888777643 67


Q ss_pred             HHHHHHHHHHhcccCCCCceEEEEEEeecC-----CCCcceEEEEEEEEecCccchhhhhcccCCcCCCCcccceecchH
Q 009727          260 ALELVHRWQYIAPKFHEDLFIRILIVHVGN-----GDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWV  334 (527)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  334 (527)
                      +.+++.+|++++.++|+++++.+.+...+.     .++..+.+.+.++|+|+++++++.+.+.|++++....++.+++|.
T Consensus       242 ~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~  321 (518)
T 3vte_A          242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI  321 (518)
T ss_dssp             HHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHH
T ss_pred             HHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchh
Confidence            789999999999999999999887765321     111235678899999999999888888888888766788999999


Q ss_pred             HHHHhhhcCCCC-Cc---hhhhhccccccccccccccccccCCCCHhHHHHHHHHHhcC--CceEEEEEecCcccccCCC
Q 009727          335 ESTVYFAGFSKG-SP---LEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEE--EMAIMIMDPFGGKMNEILE  408 (527)
Q Consensus       335 ~~~~~~~~~~~g-~~---~~~~l~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~gga~~~~~~  408 (527)
                      +.+.++...+.+ .+   ++.++++......+||.||+|+.++++++.++.+++.+.+.  +.+.+.++++||++++++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~  401 (518)
T 3vte_A          322 DTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISE  401 (518)
T ss_dssp             HHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCT
T ss_pred             hhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCC
Confidence            998887755433 33   45555554333456789999999899999999999988763  3567899999999999999


Q ss_pred             CCCCCcccCCceEEEEEEEEeCCCcccchhhHHHHHHHHHHhhcccccCCCCccccCCCCcccC-CcccCCcchHHhhhh
Q 009727          409 SEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLG-TNKLQNASYSEAAAW  487 (527)
Q Consensus       409 ~~taf~~R~~~~~~~~~~~~W~~~~~d~~~~~~~~~~~~~~~l~p~~~~~~~g~Y~Ny~d~~l~-~~~~~~~~~~~~~~w  487 (527)
                      ++|||+||++.+|.+++.+.|.++..+  +...+|++++++.|.|+.+..++++|+||+|.+++ .+...|++++....|
T Consensus       402 ~~TAf~hR~~~~~~~~~~~~w~~~~~~--~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w  479 (518)
T 3vte_A          402 SAIPFPHRAGIMYELWYTASWEKQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW  479 (518)
T ss_dssp             TSSSCCCCTTCCEEEEEEEEECCTTTH--HHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHH
T ss_pred             CCCcccccCcceEEEEEEEecCCcchh--HHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhH
Confidence            999999999558999999999865543  67899999999999999766667999999999887 433446677777889


Q ss_pred             HhhhhcccHHHHHHHHhccCCCCCcccCCCCCCcccC
Q 009727          488 GIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFGEI  524 (527)
Q Consensus       488 ~~~yyg~n~~RL~~IK~kyDP~~vF~~~~~i~~~~~~  524 (527)
                      ++.|||+||+||++||+||||+|||+++|||+|...-
T Consensus       480 ~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~~  516 (518)
T 3vte_A          480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPH  516 (518)
T ss_dssp             HHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCTT
T ss_pred             HHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCCC
Confidence            9999999999999999999999999999999998663
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 527
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 9e-18
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 8e-16
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 4e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 80.0 bits (196), Expect = 9e-18
 Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 65  YLNATTPKPLLIITPFHESEIQAAV-FCSKNH--DLQIRVRSGGHDYEGLSYLCRTPFII 121
           + N T+  P  ++ P    ++ A +   +        I  R  GH   G ++      + 
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 122 IDLINM----RSIEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHL 177
           +  +        I ++ +             ++  A   + +           + +GG L
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTL 140

Query: 178 GGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFWAIRGGGGSSFGIILSW 236
              G      ++G     V++  +I  +G ++   + +  DLF A+ GG G  FG+I   
Sbjct: 141 SNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRA 199

Query: 237 KIKLV 241
           +I + 
Sbjct: 200 RIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.83
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 95.55
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 94.2
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.93
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.82
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.85
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.55
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 85.72
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 84.76
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=3.1e-37  Score=291.91  Aligned_cols=176  Identities=16%  Similarity=0.262  Sum_probs=158.6

Q ss_pred             cCccCCCCCCccEEEecCCHHHHHHHHHHHHhC---CCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe------EEc
Q 009727           63 PRYLNATTPKPLLIITPFHESEIQAAVFCSKNH---DLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI------EIN  133 (527)
Q Consensus        63 ~r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~---~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i------~~d  133 (527)
                      ..|.......|.+|++|+|++||+++|++|+++   ++|+++||+||++.+.+...  ++++|||++||+|      ++|
T Consensus        20 ~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~--~~ividl~~l~~i~~~~~~~id   97 (206)
T d1w1oa2          20 TDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP--GGVVVNMASLGDAAAPPRINVS   97 (206)
T ss_dssp             CCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCT--TSEEEEGGGGGCSSSSCSEEEC
T ss_pred             ECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccC--CCEeeeccccceeeeceeEEEe
Confidence            346655667999999999999999999999997   69999999999999887643  4899999999985      689


Q ss_pred             CCCCEEEEcCCCCHHHHHHHHHHcCCccccc-CCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-c
Q 009727          134 LEDETAWVQSGANLGELYYALAMKSLVHGFP-AGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-R  211 (527)
Q Consensus       134 ~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~  211 (527)
                      ++..+++||||+++.||.++|.++|+  .++ .+....++|||++++||+|..+.+||..+|+|+++|+|++||++++ +
T Consensus        98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          98 ADGRYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             TTSSEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            99999999999999999999999985  333 4556778999999999999999999999999999999999999998 5


Q ss_pred             ccCChhhhhhhhccCCCceEEEEEEEEEEEec
Q 009727          212 RAMGEDLFWAIRGGGGSSFGIILSWKIKLVRV  243 (527)
Q Consensus       212 ~~~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~  243 (527)
                      ..+|+||||++||+ +|+|||||+++||++|+
T Consensus       176 ~~~~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQLNADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSSHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            66789999999998 79999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure