Citrus Sinensis ID: 009728

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------

MALVGSTSITPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSQQPLASSSLL

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEcccccHHHHHHHHHHHccccccccEEEEEcccHHHHHHHcHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc

cccEcccEccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccEccccEccccccccEccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHccHHHHHHccccccccccccccEEEEEccccccccccEEEEEcccccccEEEEcccccHHHHHHHHHHHccccccccEEEEEEccHHHHHHHcHHHHHHHHHcccEEEEEEcccccccEEcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEcccccHccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccc

malvgstsitptkssfvqpqsqpfitkprsnihpisavhaadsakppsavktttkapepvlktsnvgpqkwtvdswkskkalqlpeypdkeELESVLKtlddfppivfaGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLmfggqmpvVKVGrmagqfakprsdpfeekngvklpsyrgdnvngdafdeksrnpdpqRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNldftehseqgdrYRELAHRVDEALGFmsaagltvdhpimtttefwtsheclllpyeqsltrldstsglyydcsahflwvgertrqldGAHVEFLKGvanplgikvsdkmdpnELVKLIEIlnpqnkpgrITIITRMGAENMRVKLPHLIRAVRRSGQIvtwvsdpmhgntikapcglktrpfdSIRAEVRAFFDvheqegshpggvhlemtgqnvteciggsrtvtfddlssryhthcdprlnasqSLELAFIIAERLRKRrissqqplasssll

malvgstsitptkssfvqpqsqpfiTKPRSNIHPISAvhaadsakppsavktttkapepvlktsnvgpqkwtvdswKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQfakprsdpfeekngvklpsyrgdnvngdafdeksrnpdpQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGvanplgikvsdkMDPNELVKLieilnpqnkpgRITIITRMGAENMRVKLPHLIRAVRRSGQIvtwvsdpmhgntikapcglktRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHcdprlnasqsLELAFIIAERLRKrrissqqplasssll

MALVGSTSITPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGearsleerlaeaaMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIssqqplasssll

***********************************************************************************************VLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMA*******************************************LIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQ*****GGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAER******************

**************************************************************************SWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK**********GVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAE*******************

*********TPTKSSFVQPQSQPFITKPRSNIHPISAV*****************APEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKR**************

********************************HPI**************************************DSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIS***********

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		527	2.2.26 [Sep-21-2011]
P27608		542	Phospho-2-dehydro-3-deoxy	N/A	no	0.971	0.944	0.840	0.0
P37216		541	Phospho-2-dehydro-3-deoxy	N/A	no	0.990	0.964	0.816	0.0
P21357		538	Phospho-2-dehydro-3-deoxy	N/A	no	0.958	0.938	0.848	0.0
Q75LR2		554	Phospho-2-dehydro-3-deoxy	no	no	0.975	0.927	0.764	0.0
Q75W16		539	Phospho-2-dehydro-3-deoxy	yes	no	0.899	0.879	0.860	0.0
P37822		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.918	0.947	0.812	0.0
P37215		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.918	0.947	0.812	0.0
P29976		525	Phospho-2-dehydro-3-deoxy	no	no	0.922	0.925	0.811	0.0
Q00218		507	Phospho-2-dehydro-3-deoxy	no	no	0.910	0.946	0.804	0.0
A0MH68		493	Probable phospho-2-dehydr	N/A	no	0.834	0.892	0.663	1e-180

>sp\|P27608\|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1	Back alignment and function desciption

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/528 (84%), Positives = 469/528 (88%), Gaps = 16/528 (3%)

Query: 11  PTKSSFVQPQS---QPF--------ITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEP 59
           P KS  VQ QS    P          TKP   + PISA+H++DS+K P      +  P P
Sbjct: 14  PNKSQLVQNQSLLPSPLKNVSFTTNSTKPVRFVQPISAIHSSDSSKNPIVSDKPSSKPSP 73

Query: 60  -----VLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARS 114
                    + V   +WTV+SWKSKKALQLPEYP++EEL+SVLKT+++FPPIVFAGEARS
Sbjct: 74  PAATVTAAATTVTKTEWTVESWKSKKALQLPEYPNQEELQSVLKTIEEFPPIVFAGEARS 133

Query: 115 LEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGR 174
           LEERL EAAMG+AFLLQGGDCAESFKEFNANNIRDTFRILLQMG VLMFGGQMPV+KVGR
Sbjct: 134 LEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGR 193

Query: 175 MAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLL 234
           MAGQFAKPRSD FEEKNGVKLPSYRGDNVNGDAFD KSR PDPQRLIRAYCQSAATLNLL
Sbjct: 194 MAGQFAKPRSDNFEEKNGVKLPSYRGDNVNGDAFDAKSRTPDPQRLIRAYCQSAATLNLL 253

Query: 235 RAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTT 294
           RAFATGGYAAMQR+ QWNLDFTEHSEQGDRYRELA+RVDEALGFM+AAGLTVDHPIM TT
Sbjct: 254 RAFATGGYAAMQRINQWNLDFTEHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMKTT 313

Query: 295 EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLG 354
           EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHF+WVGERTRQLDGAHVEFL+GVANPLG
Sbjct: 314 EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFIWVGERTRQLDGAHVEFLRGVANPLG 373

Query: 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV 414
           IKVSDKMDP+ LVKLIEILNP NK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWV
Sbjct: 374 IKVSDKMDPSALVKLIEILNPDNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWV 433

Query: 415 SDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGS 474
           SDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGS
Sbjct: 434 SDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGS 493

Query: 475 RTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSQQPLA 522
           RTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+ SQ  L 
Sbjct: 494 RTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLGSQNVLG 541

Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 4

>sp\|P37216\|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P21357\|AROF_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2	Back alignment and function description

>sp\|Q75LR2\|AROF_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2	Back alignment and function description

>sp\|Q75W16\|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1	Back alignment and function description

>sp\|P37822\|AROG_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1	Back alignment and function description

>sp\|P37215\|AROF_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P29976\|AROF_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2	Back alignment and function description

>sp\|Q00218\|AROG_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2	Back alignment and function description

>sp\|A0MH68\|AROF_CATRO Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		527
224084626		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.984	0.977	0.871	0.0
224063263		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.984	0.977	0.871	0.0
255545782		535	Phospho-2-dehydro-3-deoxyheptonate aldol	0.986	0.971	0.872	0.0
2398679		535	3-deoxy-D-arabino-heptulosonate 7-phosph	0.973	0.958	0.863	0.0
76782190		539	putative 3-deoxy-D-arabino-heptulosonate	0.986	0.964	0.85	0.0
262181539		548	3-deoxy-D-arabino-heptulosonate-7-phosph	0.996	0.958	0.825	0.0
356500707		532	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.984	0.975	0.846	0.0
225459235		548	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.996	0.958	0.823	0.0
114193		542	RecName: Full=Phospho-2-dehydro-3-deoxyh	0.971	0.944	0.840	0.0
350534836		541	phospho-2-dehydro-3-deoxyheptonate aldol	0.990	0.964	0.816	0.0

>gi\|224084626\|ref\|XP_002307364.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|118486265\|gb\|ABK94974.1\| unknown [Populus trichocarpa] gi\|222856813\|gb\|EEE94360.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/529 (87%), Positives = 486/529 (91%), Gaps = 10/529 (1%)

Query: 6   STSITPTKSSFVQPQSQP-----FITKPRSNIHPISAVHAADSAKPPSAVKT---TTKAP 57
           S+SI P+KS  + P ++P     F TKP  +   ISAVH+AD +K P  +KT   T+   
Sbjct: 5   SSSIIPSKS--LIPSNKPHQPCFFTTKPSRSTLRISAVHSADPSKSPPPIKTPAATSTKA 62

Query: 58  EPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEE 117
             V  T NVG  KWTV+SWKSKKALQLPEYPDKE+ +SVLKTLD FPPIVFAGEARSLEE
Sbjct: 63  TTVAPTVNVGAGKWTVESWKSKKALQLPEYPDKEDFDSVLKTLDAFPPIVFAGEARSLEE 122

Query: 118 RLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAG 177
           +LAEAAMG AFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPV+KVGR+AG
Sbjct: 123 KLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVIKVGRLAG 182

Query: 178 QFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAF 237
           QFAKPRSDPFEEK+GVKLPSYRGDNVNGDAFDEKSR PDPQR+IRAYCQSAATLNLLRAF
Sbjct: 183 QFAKPRSDPFEEKDGVKLPSYRGDNVNGDAFDEKSRIPDPQRMIRAYCQSAATLNLLRAF 242

Query: 238 ATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFW 297
           ATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFM+AAGLTVDHPIMTTTEFW
Sbjct: 243 ATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAAAGLTVDHPIMTTTEFW 302

Query: 298 TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKV 357
           TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFL+GVANPLGIKV
Sbjct: 303 TSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLRGVANPLGIKV 362

Query: 358 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDP 417
           SDKM+PNELVKLIEI NPQNKPGRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDP
Sbjct: 363 SDKMNPNELVKLIEIFNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDP 422

Query: 418 MHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTV 477
           MHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTV
Sbjct: 423 MHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTV 482

Query: 478 TFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISSQQPLASSSL 526
           TFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR+RRI SQ  +A + L
Sbjct: 483 TFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRRRRIGSQSTVAPALL 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224063263\|ref\|XP_002301067.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|222842793\|gb\|EEE80340.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255545782\|ref\|XP_002513951.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis] gi\|223547037\|gb\|EEF48534.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|2398679\|emb\|CAA75092.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia]	Back alignment and taxonomy information

>gi\|76782190\|gb\|ABA54865.1\| putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica]	Back alignment and taxonomy information

>gi\|262181539\|gb\|ACY29660.1\| 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356500707\|ref\|XP_003519173.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|225459235\|ref\|XP_002285754.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi|114193|sp|P27608.1|AROF_TOBAC RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1; AltName: Full=DAHP synthase 1; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 1; Flags: Precursor gi|170225|gb|AAA34068.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Nicotiana tabacum] gi|228697|prf||1808327A deoxyheptulosonate phosphate synthase

Back alignment and taxonomy information

>gi|350534836|ref|NP_001234418.1| phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Solanum lycopersicum] gi|584778|sp|P37216.1|AROG_SOLLC RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; AltName: Full=DAHP synthase 2; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 2; Flags: Precursor gi|410488|emb|CAA79856.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Solanum lycopersicum]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		527
TAIR\|locus:2009547		527	AT1G22410 [Arabidopsis thalian	0.973	0.973	0.792	8.8e-221
TAIR\|locus:2005525		525	DHS1 "3-deoxy-D-arabino-heptul	0.946	0.950	0.773	1.5e-211
TAIR\|locus:2005526		507	DHS2 "3-deoxy-d-arabino-heptul	0.933	0.970	0.776	2.4e-211
TIGR_CMR\|SPO_1942		465	SPO_1942 "3-deoxy-7-phosphohep	0.840	0.952	0.563	3.3e-134
TIGR_CMR\|CJE_0816		446	CJE_0816 "3-deoxy-7-phosphohep	0.840	0.993	0.530	2.9e-126
ASPGD\|ASPL0000049433		482	AN1673 [Emericella nidulans (t	0.398	0.435	0.490	2.4e-108
UNIPROTKB\|A0R033		464	aroG "Phospho-2-dehydro-3-deox	0.821	0.933	0.475	9.2e-107
UNIPROTKB\|O53512		462	aroG "Phospho-2-dehydro-3-deox	0.821	0.937	0.466	1.2e-104
UNIPROTKB\|G4N683		466	MGG_08596 "Phospho-2-dehydro-3	0.838	0.948	0.454	9.1e-100

TAIR\|locus:2009547 AT1G22410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2132 (755.6 bits), Expect = 8.8e-221, P = 8.8e-221
 Identities = 413/521 (79%), Positives = 445/521 (85%)

Query:     1 MALV-GSTSITPTKSSFV---QPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKA 56
             MAL+ GS +++  KSS +   QP     +++P S    ISAV         S+    T  
Sbjct:     1 MALMNGSMNLSSVKSSMINHRQPNFSSAVSRPTS--FRISAVQTDPKTPAASSASAATTT 58

Query:    57 PEPVLKTS--NVGPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXX 114
             P  + K    NVG  KW  +SW++KKALQ P+YPD   LE+VL+T++ FPPIVFAG    
Sbjct:    59 PATLTKPVGVNVGKGKWAPESWRTKKALQQPDYPDLAALEAVLETIEAFPPIVFAGEARL 118

Query:   115 XXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGR 174
                      MG+AFLLQGGDCAESFKEFNANNIRDTFRILLQMG VLMFGGQ+PVVKVGR
Sbjct:   119 LEERLGQAAMGEAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQVPVVKVGR 178

Query:   175 MAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLL 234
             MAGQFAKPRSD FEEK+GVKLPSYRGDN+NGDAFD KSR PDPQR+IRAYCQSAATLNLL
Sbjct:   179 MAGQFAKPRSDSFEEKDGVKLPSYRGDNINGDAFDSKSRIPDPQRMIRAYCQSAATLNLL 238

Query:   235 RAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTT 294
             RAFATGGYAAMQRVTQWNLDFTE SEQGDRYRELA+RVDEALGFM AAGLT+DHPIM TT
Sbjct:   239 RAFATGGYAAMQRVTQWNLDFTERSEQGDRYRELANRVDEALGFMHAAGLTLDHPIMQTT 298

Query:   295 EFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLG 354
             +FWTSHECLLLPYEQSLTRLDSTSGLYYDCSAH +WVGERTRQLDGAHVEFL+GVANPLG
Sbjct:   299 DFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLG 358

Query:   355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWV 414
             IKVSDKMDP ELVKLIEILN  NKPGRITIITRMGAENMRVKLPHLIR VRR+GQIVTWV
Sbjct:   359 IKVSDKMDPKELVKLIEILNADNKPGRITIITRMGAENMRVKLPHLIREVRRAGQIVTWV 418

Query:   415 SDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGS 474
             SDPMHGNTIKAPCGLKTRPFD+I AEVRAFFDVHEQEGSHPGG+HLEMTGQNVTECIGGS
Sbjct:   419 SDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGS 478

Query:   475 RTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 515
             RTVTFDDL SRYHTHCDPRLNASQSLEL+FIIAERLRKRRI
Sbjct:   479 RTVTFDDLGSRYHTHCDPRLNASQSLELSFIIAERLRKRRI 519

GO:0003849 "3-deoxy-7-phosphoheptulonate synthase activity" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR\|locus:2005525 DHS1 "3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005526 DHS2 "3-deoxy-d-arabino-heptulosonate 7-phosphate synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_1942 SPO_1942 "3-deoxy-7-phosphoheptulonate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0816 CJE_0816 "3-deoxy-7-phosphoheptulonate synthase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000049433 AN1673 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R033 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

UNIPROTKB\|O53512 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N683 MGG_08596 "Phospho-2-dehydro-3-deoxyheptonate aldolase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0MH68	AROF_CATRO	2, ., 5, ., 1, ., 5, 4	0.6639	0.8349	0.8924	N/A	no
Q75LR2	AROF_ORYSJ	2, ., 5, ., 1, ., 5, 4	0.7643	0.9753	0.9277	no	no
P80574	AROF_STRCO	2, ., 5, ., 1, ., 5, 4	0.5363	0.8311	0.9733	yes	no
P27608	AROF_TOBAC	2, ., 5, ., 1, ., 5, 4	0.8409	0.9715	0.9446	N/A	no
P29976	AROF_ARATH	2, ., 5, ., 1, ., 5, 4	0.8117	0.9222	0.9257	no	no
P37822	AROG_SOLTU	2, ., 5, ., 1, ., 5, 4	0.8127	0.9184	0.9471	N/A	no
P37216	AROG_SOLLC	2, ., 5, ., 1, ., 5, 4	0.8166	0.9905	0.9648	N/A	no
Q00218	AROG_ARATH	2, ., 5, ., 1, ., 5, 4	0.8048	0.9108	0.9467	no	no
P37215	AROF_SOLLC	2, ., 5, ., 1, ., 5, 4	0.8127	0.9184	0.9471	N/A	no
O53512	AROG_MYCTU	2, ., 5, ., 1, ., 5, 4	0.4751	0.8216	0.9372	yes	no
P21357	AROF_SOLTU	2, ., 5, ., 1, ., 5, 4	0.8482	0.9582	0.9386	N/A	no
A0R033	AROG_MYCS2	2, ., 5, ., 1, ., 5, 4	0.4842	0.8216	0.9331	yes	no
Q75W16	AROG_ORYSJ	2, ., 5, ., 1, ., 5, 4	0.8604	0.8994	0.8794	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.54	0.994
3rd Layer	2.5.1	0.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		527
PLN02291		474	PLN02291, PLN02291, phospho-2-dehydro-3-deoxyhepto	0.0
pfam01474		437	pfam01474, DAHP_synth_2, Class-II DAHP synthetase	0.0
TIGR01358		443	TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulo	0.0
COG3200		445	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-p	0.0

>gnl\|CDD\|177928 PLN02291, PLN02291, phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

 Score = 1062 bits (2749), Expect = 0.0
 Identities = 426/488 (87%), Positives = 449/488 (92%), Gaps = 14/488 (2%)

Query: 38  VHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPDKEELESVL 97
           VHAA+ +K P               +S  GP+KW+ DSW+SKKALQLPEYPD+ ELE VL
Sbjct: 1   VHAAEPSKTPV--------------SSAGGPKKWSPDSWRSKKALQLPEYPDQAELEEVL 46

Query: 98  KTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQM 157
           KTL+ FPP+VFAGEARSLEERLAEAAMG+AFLLQGGDCAESFKEFNANNIRDTFR+LLQM
Sbjct: 47  KTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRVLLQM 106

Query: 158 GVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDP 217
           GVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEK+GVKLPSYRGDN+NGDAFDEKSR PDP
Sbjct: 107 GVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDP 166

Query: 218 QRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALG 277
           QR++RAY QSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALG
Sbjct: 167 QRMVRAYSQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALG 226

Query: 278 FMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQ 337
           FM+A GLT DHPIMTTTEFWTSHECLLLPYEQ+LTR DSTSGLYYDCSAH LWVGERTRQ
Sbjct: 227 FMAACGLTTDHPIMTTTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMLWVGERTRQ 286

Query: 338 LDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKL 397
           LDGAHVEFL+GVANPLGIKVSDKMDP ELVKLIEILNPQNKPGR+TII RMGAE +RVKL
Sbjct: 287 LDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRMGAEKLRVKL 346

Query: 398 PHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGG 457
           PHLIRAVRR+GQIVTWVSDPMHGNTIKAP GLKTRPFD+IRAEVRAFFDVHEQEGSHPGG
Sbjct: 347 PHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGG 406

Query: 458 VHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISS 517
           VHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI S
Sbjct: 407 VHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIRS 466

Query: 518 QQPLASSS 525
               A +S
Sbjct: 467 GANTALAS 474

Length = 474

>gnl\|CDD\|216520 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	Back alignment and domain information

>gnl\|CDD\|130425 TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>gnl\|CDD\|225741 COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		527
PLN02291		474	phospho-2-dehydro-3-deoxyheptonate aldolase	100.0
TIGR01358		443	DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthas	100.0
PF01474		439	DAHP_synth_2: Class-II DAHP synthetase family; Int	100.0
COG3200		445	AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (	100.0
PRK09261		349	phospho-2-dehydro-3-deoxyheptonate aldolase; Valid	96.75
PRK12755		353	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	96.72
TIGR00034		344	aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	96.09
PRK12756		348	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	94.77
PRK12822		356	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	94.58
PF00793		270	DAHP_synth_1: DAHP synthetase I family; InterPro:	93.9
PLN03033		290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	93.11
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.06
TIGR01362		258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	90.18
KOG2599		308	consensus Pyridoxal/pyridoxine/pyridoxamine kinase	89.98
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	88.75
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	88.66
PRK05198		264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	86.82
COG2240		281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	85.4
PRK05756		286	pyridoxamine kinase; Validated	84.75
TIGR00687		286	pyridox_kin pyridoxal kinase. ThiD and related pro	83.45
COG0722		351	AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (	82.14
PF10096		243	DUF2334: Uncharacterized protein conserved in bact	81.37

>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

Probab=100.00  E-value=1.2e-211  Score=1629.75  Aligned_cols=449  Identities=92%  Similarity=1.436  Sum_probs=443.2

Q ss_pred             CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH
Q 009728           69 QKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR  148 (527)
Q Consensus        69 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~  148 (527)
                      ..|+|+|||++|++|||+|||+++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus        18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir   97 (474)
T PLN02291         18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR   97 (474)
T ss_pred             CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence            44999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHH
Q 009728          149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA  228 (527)
Q Consensus       149 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Sa  228 (527)
                      +|+++|+|||.||+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus        98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa  177 (474)
T PLN02291         98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA  177 (474)
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccc
Q 009728          229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYE  308 (527)
Q Consensus       229 atLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE  308 (527)
                      +|||+||||..|||||||++++||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus       178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE  257 (474)
T PLN02291        178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE  257 (474)
T ss_pred             HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999988557899999999999999999


Q ss_pred             cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009728          309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM  388 (527)
Q Consensus       309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm  388 (527)
                      +||||.|+.+|+|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus       258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm  337 (474)
T PLN02291        258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM  337 (474)
T ss_pred             hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009728          389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT  468 (527)
Q Consensus       389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VT  468 (527)
                      ||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||
T Consensus       338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHLElTG~dVT  417 (474)
T PLN02291        338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT  417 (474)
T ss_pred             chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHHhhhcc
Q 009728          469 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISS  517 (527)
Q Consensus       469 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~~~~~~  517 (527)
                      ||+||+..++|+||..||+|+||||||++|||||||+||++|+++|...
T Consensus       418 EC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QsLelaf~va~~l~~~~~~~  466 (474)
T PLN02291        418 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIRS  466 (474)
T ss_pred             eeCCCccccCcchhhhccccCCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999998877654

>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2	Back alignment and domain information

>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	Back alignment and domain information

>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate	Back alignment and domain information

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase	Back alignment and domain information

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK05756 pyridoxamine kinase; Validated	Back alignment and domain information

>TIGR00687 pyridox_kin pyridoxal kinase	Back alignment and domain information

>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		527
2w19_A		472	Non-Covalent Complex Between Dahp Synthase And Chor		1e-115
3kgf_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-115
3rzi_A		462	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-115
2b7o_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		1e-106

>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate Mutase From Mycobacterium Tuberculosis Length = 472

Back alignment and structure

Iteration: 1

Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/442 (46%), Positives = 282/442 (63%), Gaps = 9/442 (2%) Query: 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132 +D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG Sbjct: 36 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 94 Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + + Sbjct: 95 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 151 Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252 + L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN Sbjct: 152 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 211 Query: 253 LDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312 +F S G RY LA +D L FMSA G+ + + T E + SHE L+L YE+++ Sbjct: 212 REFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAML 269 Query: 313 RL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKL 369 RL D +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+ M P V+ Sbjct: 270 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEY 329 Query: 370 IEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL 429 +E L+P NKPGR+T+++RMG +R LP ++ V+ +G V W DPMHGNT ++ G Sbjct: 330 VERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF 389 Query: 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTH 489 KTR FD I EV+ FF+VH G+HPGG+H+E+TG+NVTEC+GG++ ++ DL+ RY T Sbjct: 390 KTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETA 449 Query: 490 CDPRLNASQSLELAFIIAERLR 511 CDPRLN QSLELAF++AE LR Sbjct: 450 CDPRLNTQQSLELAFLVAEMLR 471

PyMOL of 2w19

>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Complexed With Phenylalanine And Tryptophan Length = 464

Back alignment and structure

>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Cocrystallized And Complexed With Phenylalanine And Tryptophan Length = 462

Back alignment and structure

>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Length = 464

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		527
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	0.0

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A* Length = 462	Back alignment and structure

 Score =  590 bits (1522), Expect = 0.0
 Identities = 210/448 (46%), Positives = 290/448 (64%), Gaps = 9/448 (2%)

Query: 67  GPQKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGK 126
              +  +D+  +K A Q P +P  + L  +   L+  PP+    E   L+E+LA+ A G+
Sbjct: 20  TDLRTRLDAALAKPAAQQPTWPADQALA-MRTVLESVPPVTVPSEIVRLQEQLAQVAKGE 78

Query: 127 AFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDP 186
           AFLLQGGDCAE+F +    +IR   R LLQM VVL +G  MPVVKV R+AGQ+AKPRS  
Sbjct: 79  AFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSAD 138

Query: 187 FEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQ 246
               + + L SYRGD +NG A D  +R  DP RL+RAY  ++A +NL+RA  + G A++ 
Sbjct: 139 I---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLH 195

Query: 247 RVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLP 306
            V  WN +F   S  G RY  LA  +D  L FMSA G+   +  + T E + SHE L+L 
Sbjct: 196 LVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLD 253

Query: 307 YEQSLTRL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDP 363
           YE+++ RL   D      +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+   M P
Sbjct: 254 YERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTP 313

Query: 364 NELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTI 423
              V+ +E L+P NKPGR+T+++RMG   +R  LP ++  V+ +G  V W  DPMHGNT 
Sbjct: 314 ELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTH 373

Query: 424 KAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLS 483
           ++  G KTR FD I  EV+ FF+VH   G+HPGG+H+E+TG+NVTEC+GG++ ++  DL+
Sbjct: 374 ESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLA 433

Query: 484 SRYHTHCDPRLNASQSLELAFIIAERLR 511
            RY T CDPRLN  QSLELAF++AE LR
Sbjct: 434 GRYETACDPRLNTQQSLELAFLVAEMLR 461

PyMOL of 3rzi

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		527
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	100.0
3tqk_A		346	Phospho-2-dehydro-3-deoxyheptonate aldolase; trans	97.83
1of8_A		370	Phospho-2-dehydro-3-deoxyheptonate aldolase, tyros	97.78
1n8f_A		350	DAHP synthetase; (beta/alpha)8 barrel, metal bindi	97.6
3sz8_A		285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	93.79
3fs2_A		298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	93.28
3nvt_A		385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	89.72
3tml_A		288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	89.26
2nwr_A		267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	84.54
1zco_A		262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	82.31

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*	Back alignment and structure

Probab=100.00  E-value=3.9e-209  Score=1605.69  Aligned_cols=434  Identities=48%  Similarity=0.854  Sum_probs=427.2

Q ss_pred             ccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHH
Q 009728           73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFR  152 (527)
Q Consensus        73 p~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~  152 (527)
                      ++|||++|++|||.|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus        26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~  104 (462)
T 3rzi_A           26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR  104 (462)
T ss_dssp             HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred             ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence            4799999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHHHHHH
Q 009728          153 ILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLN  232 (527)
Q Consensus       153 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~SaatLn  232 (527)
                      +|+|||+||+|++++|||||||||||||||||+++|   |++||||||||||+++||+++|+|||+|||+||++|++|||
T Consensus       105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN  181 (462)
T 3rzi_A          105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN  181 (462)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc
Q 009728          233 LLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT  312 (527)
Q Consensus       233 ~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt  312 (527)
                      +||||++||||||+++++||++|+++++.+++|++|+++|++||+||++||++.+  .+.+++||||||||||+||+|||
T Consensus       182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt  259 (462)
T 3rzi_A          182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML  259 (462)
T ss_dssp             HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred             HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999987  68899999999999999999999


Q ss_pred             ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728          313 RLD---STSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG  389 (527)
Q Consensus       313 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG  389 (527)
                      |.|   +.+|.|||||||||||||||||||||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus       260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG  339 (462)
T 3rzi_A          260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG  339 (462)
T ss_dssp             EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred             cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence            999   88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccc
Q 009728          390 AENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTE  469 (527)
Q Consensus       390 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTE  469 (527)
                      |+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+||||||||||||||||
T Consensus       340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il~Ev~~ff~vh~~~Gt~~GGvHlE~TG~dVTE  419 (462)
T 3rzi_A          340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTE  419 (462)
T ss_dssp             TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCCCC
T ss_pred             CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009728          470 CIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK  512 (527)
Q Consensus       470 CvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~  512 (527)
                      |+||++.++|+||+.||+|+||||||++|||||||+||++|+.
T Consensus       420 C~GG~~~i~e~dL~~rY~T~CDPRLN~~QsLelAflvAe~l~~  462 (462)
T 3rzi_A          420 CLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD  462 (462)
T ss_dssp             SBBTTTTBCTTGGGTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCcccChhhhhhcccccCCcccCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999973

PyMOL of 3rzi

>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}	Back alignment and structure

>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*	Back alignment and structure

>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*	Back alignment and structure

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*	Back alignment and structure

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}	Back alignment and structure

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*	Back alignment and structure

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A	Back alignment and structure

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...	Back alignment and structure

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		527
d2b7oa1		462	c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,	0.0

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Length = 462	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  687 bits (1773), Expect = 0.0
 Identities = 215/467 (46%), Positives = 295/467 (63%), Gaps = 11/467 (2%)

Query: 50  VKTTTKAPEPVLKTSNVGPQ--KWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIV 107
           +  T   P   L +    P   +  +D+  +K A Q P +P  + L  +   L+  PP+ 
Sbjct: 1   MNWTVDIPIDQLPSLPPLPTDLRTRLDAALAKPAAQQPTWPADQALA-MRTVLESVPPVT 59

Query: 108 FAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQM 167
              E   L+E+LA+ A G+AFLLQGGDCAE+F +    +IR   R LLQM VVL +G  M
Sbjct: 60  VPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASM 119

Query: 168 PVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQS 227
           PVVKV R+AGQ+AKPRS      + + L SYRGD +NG A D  +R  DP RL+RAY  +
Sbjct: 120 PVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANA 176

Query: 228 AATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVD 287
           +A +NL+RA  + G A++  V  WN +F   S  G RY  LA  +D  L FMSA G  V 
Sbjct: 177 SAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACG--VA 234

Query: 288 HPIMTTTEFWTSHECLLLPYEQSLTRL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVE 344
              + T E + SHE L+L YE+++ RL   D      +D SAH +W+GERTRQ+DGAH+ 
Sbjct: 235 DRNLQTAEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIA 294

Query: 345 FLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAV 404
           F + +ANP+G+K+   M P   V+ +E L+P NKPGR+T+++RMG   +R  LP ++  V
Sbjct: 295 FAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKV 354

Query: 405 RRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTG 464
           + +G  V W  DPMHGNT ++  G KTR FD I  EV+ FF+VH   G+HPGG+H+E+TG
Sbjct: 355 QATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITG 414

Query: 465 QNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 511
           +NVTEC+GG++ ++  DL+ RY T CDPRLN  QSLELAF++AE LR
Sbjct: 415 ENVTECLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLR 461

PyMOL of d2b7oa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		527
d2b7oa1		462	Probable DAHP synthetase AroG, phenylalanine-repre	100.0
d2a21a1		263	3-deoxy-D-manno-octulosonate 8-phosphate synthase	92.94

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.2e-206  Score=1584.08  Aligned_cols=436  Identities=48%  Similarity=0.854  Sum_probs=415.2

Q ss_pred             CCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHH
Q 009728           71 WTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDT  150 (527)
Q Consensus        71 Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k  150 (527)
                      |..++|+++||+|||.|||+.+| +|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus        24 ~~~~~~~~~Pa~QqP~ypd~~~l-~v~~~L~~~PPLV~a~Ei~~Lk~~La~va~G~AFlLQgGDCAEsF~~~~~~~Ir~k  102 (462)
T d2b7oa1          24 TRLDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGN  102 (462)
T ss_dssp             HHHHHHHTSCCTTCCCCCHHHHH-HHHHHHTSSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCSHHHHHHH
T ss_pred             hhhhhhhcCccccCCCCCCHHHH-HHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccccChhhcChHHHHHH
Confidence            78899999999999999999998 59999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHHHH
Q 009728          151 FRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAAT  230 (527)
Q Consensus       151 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Saat  230 (527)
                      +++|+|||.||++++++|||||||||||||||||+++   ||++||||||||||+.+||+++|+|||+|||+||++|++|
T Consensus       103 ~k~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRS~~~---dgv~LpsYRGDiVN~~~f~~~aR~PDP~Rll~aY~~Saat  179 (462)
T d2b7oa1         103 VRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAA  179 (462)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEEEECSSCCCCCCSCSB---CTTSSBCCCCTTTSCSSSSHHHHSCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCEEEeccchhcccCCccCcc---cccccccccCCcccCCCCChhccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999986   6889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccc
Q 009728          231 LNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQS  310 (527)
Q Consensus       231 Ln~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~a  310 (527)
                      ||+||||++||||||++++.||++|+++++.+++|++++++|+++|+||++||++..  .+.+++||||||||||+||+|
T Consensus       180 LNllRa~~~gg~AdL~~v~~Wn~~f~~~s~~~~~y~~la~~I~~al~Fm~a~G~~~~--~l~~~~fyTSHEaLlL~YE~A  257 (462)
T d2b7oa1         180 MNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERA  257 (462)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHHTTCCGG--GTCCCCEEEEEECCCHHHHHH
T ss_pred             HHHHHHhhccCccchhhhhhcccccccCCchhHHHHHHHHHHHHHhhhHhhcCCCcc--cccccccccchHhhccchhhh
Confidence            999999999999999999999999999999999999999999999999999999875  678999999999999999999


Q ss_pred             cccc---cCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 009728          311 LTRL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR  387 (527)
Q Consensus       311 ltR~---d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R  387 (527)
                      |||.   |+.+++|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+|
T Consensus       258 ltR~~~~d~~~~~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~~~LNP~nepGRltLI~R  337 (462)
T d2b7oa1         258 MLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSR  337 (462)
T ss_dssp             TEEECCSSSSSCCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEEC
T ss_pred             heecccccCCCCceeccccceeeecccccccccchhHHHHhccCcceeeeCCCCCHHHHHHHHHHhCcccccceEEEEeh
Confidence            9996   5667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCc
Q 009728          388 MGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNV  467 (527)
Q Consensus       388 mGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~V  467 (527)
                      |||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+||||||||||||||
T Consensus       338 mGa~ki~~~LP~LI~aV~~~g~~VvW~cDPMHGNT~~s~~G~KTR~f~~Il~Ev~~ff~vh~~~gt~~GGvHlE~TG~dV  417 (462)
T d2b7oa1         338 MGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENV  417 (462)
T ss_dssp             CCTTTHHHHHHHHHHHHHTTTCCCEEEECCSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCC
T ss_pred             hchHHHHHHHHHHHHHHHhcCCceEEEecCCcCCceeCCCCcccCCHHHHHHHHHHHHHHHHHcCCccCeEEEEecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009728          468 TECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK  512 (527)
Q Consensus       468 TECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~  512 (527)
                      |||+||++.++|+||..||+|+||||||++|||||||+||++||+
T Consensus       418 TEC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QslelAf~ia~~l~~  462 (462)
T d2b7oa1         418 TECLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD  462 (462)
T ss_dssp             C-------------CCTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred             ceeCCCcccCChhhhhhccccCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999984

PyMOL of d2b7oa1

>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure